Multiple sequence alignment - TraesCS4B01G030800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G030800 chr4B 100.000 5644 0 0 1 5644 22904080 22898437 0.000000e+00 10423.0
1 TraesCS4B01G030800 chr4D 93.114 2222 103 21 1295 3505 12548008 12545826 0.000000e+00 3210.0
2 TraesCS4B01G030800 chr4D 88.387 1240 99 16 15 1222 12549232 12548006 0.000000e+00 1450.0
3 TraesCS4B01G030800 chr4D 91.365 1077 54 18 3648 4718 12545605 12544562 0.000000e+00 1437.0
4 TraesCS4B01G030800 chr4D 94.728 607 27 3 5036 5638 12535070 12534465 0.000000e+00 939.0
5 TraesCS4B01G030800 chr4D 95.622 434 14 2 5036 5465 12543785 12543353 0.000000e+00 691.0
6 TraesCS4B01G030800 chr4D 92.609 230 13 3 3391 3616 12545831 12545602 1.520000e-85 327.0
7 TraesCS4B01G030800 chr4D 94.972 179 7 2 5461 5638 12543253 12543076 4.310000e-71 279.0
8 TraesCS4B01G030800 chr4D 100.000 39 0 0 4771 4809 12544174 12544136 7.840000e-09 73.1
9 TraesCS4B01G030800 chr4A 93.051 1439 65 14 1379 2806 590088411 590089825 0.000000e+00 2071.0
10 TraesCS4B01G030800 chr4A 93.693 1094 44 11 3648 4741 590090714 590091782 0.000000e+00 1615.0
11 TraesCS4B01G030800 chr4A 95.849 819 27 5 2801 3616 590089903 590090717 0.000000e+00 1317.0
12 TraesCS4B01G030800 chr4A 94.572 608 28 2 5035 5638 590092188 590092794 0.000000e+00 935.0
13 TraesCS4B01G030800 chr4A 90.738 637 49 3 563 1193 590087768 590088400 0.000000e+00 841.0
14 TraesCS4B01G030800 chr4A 86.914 512 37 16 4 504 590087273 590087765 1.070000e-151 547.0
15 TraesCS4B01G030800 chr4A 94.595 148 8 0 4893 5040 428284139 428284286 4.400000e-56 230.0
16 TraesCS4B01G030800 chrUn 93.245 607 35 3 5036 5638 357650771 357651375 0.000000e+00 889.0
17 TraesCS4B01G030800 chr1D 95.833 144 6 0 4894 5037 327856852 327856995 3.400000e-57 233.0
18 TraesCS4B01G030800 chr5B 90.751 173 14 1 4865 5037 648279369 648279539 4.400000e-56 230.0
19 TraesCS4B01G030800 chr5B 91.463 164 14 0 4874 5037 594099162 594098999 5.690000e-55 226.0
20 TraesCS4B01G030800 chr2A 94.595 148 8 0 4893 5040 469790056 469790203 4.400000e-56 230.0
21 TraesCS4B01G030800 chr7A 91.018 167 15 0 4871 5037 158664920 158665086 5.690000e-55 226.0
22 TraesCS4B01G030800 chr5D 90.909 165 14 1 4875 5038 135238512 135238676 2.650000e-53 220.0
23 TraesCS4B01G030800 chr5D 86.275 102 7 6 1347 1445 518875249 518875152 2.780000e-18 104.0
24 TraesCS4B01G030800 chr6D 89.266 177 15 4 4871 5047 41542508 41542336 9.520000e-53 219.0
25 TraesCS4B01G030800 chr6D 90.110 91 3 4 1346 1434 84938457 84938543 4.620000e-21 113.0
26 TraesCS4B01G030800 chr6D 90.000 90 3 4 1347 1434 84938543 84938458 1.660000e-20 111.0
27 TraesCS4B01G030800 chr5A 87.568 185 19 3 4865 5047 623008706 623008888 1.590000e-50 211.0
28 TraesCS4B01G030800 chr2D 87.912 91 5 5 1347 1435 393568220 393568306 1.000000e-17 102.0
29 TraesCS4B01G030800 chr2D 86.813 91 7 3 1346 1435 145889551 145889637 4.650000e-16 97.1
30 TraesCS4B01G030800 chr1A 87.500 88 9 2 1347 1434 521250757 521250842 3.600000e-17 100.0
31 TraesCS4B01G030800 chr2B 86.813 91 7 3 1346 1435 206113853 206113939 4.650000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G030800 chr4B 22898437 22904080 5643 True 10423.000000 10423 100.000000 1 5644 1 chr4B.!!$R1 5643
1 TraesCS4B01G030800 chr4D 12543076 12549232 6156 True 1066.728571 3210 93.724143 15 5638 7 chr4D.!!$R2 5623
2 TraesCS4B01G030800 chr4D 12534465 12535070 605 True 939.000000 939 94.728000 5036 5638 1 chr4D.!!$R1 602
3 TraesCS4B01G030800 chr4A 590087273 590092794 5521 False 1221.000000 2071 92.469500 4 5638 6 chr4A.!!$F2 5634
4 TraesCS4B01G030800 chrUn 357650771 357651375 604 False 889.000000 889 93.245000 5036 5638 1 chrUn.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 277 0.033011 TTCTTCCTCCTCCTCCTCGG 60.033 60.000 0.00 0.00 0.00 4.63 F
582 621 0.106167 GTAAGGAATTCCCCTGGCCC 60.106 60.000 21.22 0.00 36.49 5.80 F
1239 1292 0.103937 GGAGCCAGTGAATCTCCTCG 59.896 60.000 14.80 0.00 42.31 4.63 F
1483 1540 0.874390 ATGTTGTCACACGTGCCATC 59.126 50.000 17.22 9.64 35.03 3.51 F
1491 1548 1.464608 CACACGTGCCATCCTAGTTTG 59.535 52.381 17.22 0.00 0.00 2.93 F
1615 1674 1.633774 ACTGGTGGTAGTGACTGGAG 58.366 55.000 0.00 0.00 0.00 3.86 F
2487 2551 2.265367 TGGAAGGCTTGTATCAGGTGA 58.735 47.619 3.46 0.00 0.00 4.02 F
3864 4132 1.727511 TTGGTGTGCTGTGCTGCTTC 61.728 55.000 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1220 1273 0.103937 CGAGGAGATTCACTGGCTCC 59.896 60.000 0.00 0.00 46.75 4.70 R
2285 2346 0.655733 ACGTTGACAGGCTGAAAACG 59.344 50.000 34.96 34.96 41.59 3.60 R
2491 2555 2.223144 TCGCCAAAGAAGTTCAATCACG 59.777 45.455 5.50 3.67 0.00 4.35 R
3354 3508 1.344438 CAAAGCCCCAAAAGAACTCCC 59.656 52.381 0.00 0.00 0.00 4.30 R
3369 3523 2.952310 AGTCACTGAAAGGAACCAAAGC 59.048 45.455 0.00 0.00 39.30 3.51 R
3590 3855 3.626028 GGCAACAAAATCTCACGTCTT 57.374 42.857 0.00 0.00 0.00 3.01 R
4123 4391 0.396060 TGTGTGATACAGCAGCCACA 59.604 50.000 0.00 0.00 37.21 4.17 R
4837 5457 0.096976 CATCACCACCATCGAAACGC 59.903 55.000 0.00 0.00 0.00 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.888326 TGAATCCCCCTTGAAAAACATG 57.112 40.909 0.00 0.00 0.00 3.21
61 62 1.410737 CCCTTGTGTACGCGTCATCG 61.411 60.000 18.63 2.14 40.37 3.84
62 63 0.731514 CCTTGTGTACGCGTCATCGT 60.732 55.000 18.63 0.00 45.49 3.73
63 64 1.057636 CTTGTGTACGCGTCATCGTT 58.942 50.000 18.63 0.00 43.15 3.85
64 65 1.454276 CTTGTGTACGCGTCATCGTTT 59.546 47.619 18.63 0.00 43.15 3.60
127 128 0.878416 CACGCCCTGGAAATCGAAAA 59.122 50.000 0.00 0.00 0.00 2.29
226 231 3.209410 GCAATCAGATCTTGACCCGAAT 58.791 45.455 0.00 0.00 38.99 3.34
259 264 2.416680 AATCTGCTGCCTCTTCTTCC 57.583 50.000 0.00 0.00 0.00 3.46
272 277 0.033011 TTCTTCCTCCTCCTCCTCGG 60.033 60.000 0.00 0.00 0.00 4.63
559 598 3.327404 ACGATCCACCCACCACCC 61.327 66.667 0.00 0.00 0.00 4.61
560 599 3.326578 CGATCCACCCACCACCCA 61.327 66.667 0.00 0.00 0.00 4.51
561 600 2.355115 GATCCACCCACCACCCAC 59.645 66.667 0.00 0.00 0.00 4.61
582 621 0.106167 GTAAGGAATTCCCCTGGCCC 60.106 60.000 21.22 0.00 36.49 5.80
585 624 4.129148 GAATTCCCCTGGCCCGCT 62.129 66.667 0.00 0.00 0.00 5.52
599 638 0.673644 CCCGCTTGGACAGATTCGTT 60.674 55.000 0.00 0.00 35.39 3.85
611 650 4.002982 ACAGATTCGTTTGCAGCATTCTA 58.997 39.130 0.00 0.00 0.00 2.10
682 726 4.006026 TCCTTTGTTCGTTCGTTTGTTC 57.994 40.909 0.00 0.00 0.00 3.18
772 819 2.595124 TGTCAGCAAGTTCGTTCTCA 57.405 45.000 0.00 0.00 0.00 3.27
775 822 2.866762 GTCAGCAAGTTCGTTCTCAAGT 59.133 45.455 0.00 0.00 0.00 3.16
780 827 4.271291 AGCAAGTTCGTTCTCAAGTTTCTC 59.729 41.667 0.00 0.00 0.00 2.87
852 901 3.485947 TGCTTGCGCTTAAACTATTGG 57.514 42.857 9.73 0.00 36.97 3.16
860 909 4.588278 CGCTTAAACTATTGGTTGCTAGC 58.412 43.478 8.10 8.10 38.29 3.42
906 955 6.161855 TGTGTTAGTAGGATGGCTCAATAG 57.838 41.667 0.00 0.00 0.00 1.73
930 979 6.712547 AGCCTTCATACATCTATTGTTTAGCC 59.287 38.462 0.00 0.00 39.87 3.93
949 998 2.802816 GCCGAGCATTTGATATTCTCGT 59.197 45.455 8.76 0.00 43.40 4.18
971 1020 5.624900 CGTTGTGAAAATTAGTGACATGGTG 59.375 40.000 0.00 0.00 0.00 4.17
1057 1106 2.543861 CGATGACATAGAACCTGGACCG 60.544 54.545 0.00 0.00 0.00 4.79
1075 1124 2.185608 GCTCCTTCTCGGCCTGTC 59.814 66.667 0.00 0.00 0.00 3.51
1117 1166 0.512952 CGGAACAAAGCAACTCTCCG 59.487 55.000 2.75 2.75 39.79 4.63
1175 1224 3.049344 GGAAGGTATGATCAGGGGTCTT 58.951 50.000 0.09 0.72 0.00 3.01
1177 1230 3.421394 AGGTATGATCAGGGGTCTTCA 57.579 47.619 0.09 0.00 0.00 3.02
1199 1252 5.962031 TCAGTTGTACTTACAGTCCCCATAT 59.038 40.000 0.00 0.00 37.52 1.78
1201 1254 4.682778 TGTACTTACAGTCCCCATATGC 57.317 45.455 0.00 0.00 0.00 3.14
1210 1263 4.848660 ACAGTCCCCATATGCTCATCTATT 59.151 41.667 0.00 0.00 0.00 1.73
1213 1266 5.549228 AGTCCCCATATGCTCATCTATTTGA 59.451 40.000 0.00 0.00 0.00 2.69
1214 1267 6.217074 AGTCCCCATATGCTCATCTATTTGAT 59.783 38.462 0.00 0.00 35.40 2.57
1219 1272 9.458727 CCCATATGCTCATCTATTTGATAAGTT 57.541 33.333 0.00 0.00 33.36 2.66
1223 1276 8.618702 ATGCTCATCTATTTGATAAGTTGGAG 57.381 34.615 0.00 0.00 33.36 3.86
1224 1277 6.484643 TGCTCATCTATTTGATAAGTTGGAGC 59.515 38.462 0.00 0.00 40.83 4.70
1225 1278 6.072783 GCTCATCTATTTGATAAGTTGGAGCC 60.073 42.308 0.00 0.00 37.57 4.70
1226 1279 6.899089 TCATCTATTTGATAAGTTGGAGCCA 58.101 36.000 0.00 0.00 33.36 4.75
1227 1280 6.994496 TCATCTATTTGATAAGTTGGAGCCAG 59.006 38.462 0.00 0.00 33.36 4.85
1228 1281 6.313519 TCTATTTGATAAGTTGGAGCCAGT 57.686 37.500 0.00 0.00 0.00 4.00
1229 1282 6.115446 TCTATTTGATAAGTTGGAGCCAGTG 58.885 40.000 0.00 0.00 0.00 3.66
1230 1283 4.365514 TTTGATAAGTTGGAGCCAGTGA 57.634 40.909 0.00 0.00 0.00 3.41
1231 1284 4.365514 TTGATAAGTTGGAGCCAGTGAA 57.634 40.909 0.00 0.00 0.00 3.18
1232 1285 4.574674 TGATAAGTTGGAGCCAGTGAAT 57.425 40.909 0.00 0.00 0.00 2.57
1233 1286 4.517285 TGATAAGTTGGAGCCAGTGAATC 58.483 43.478 0.00 0.00 0.00 2.52
1234 1287 4.225942 TGATAAGTTGGAGCCAGTGAATCT 59.774 41.667 0.00 0.00 0.00 2.40
1235 1288 2.777832 AGTTGGAGCCAGTGAATCTC 57.222 50.000 0.00 0.00 0.00 2.75
1236 1289 1.280421 AGTTGGAGCCAGTGAATCTCC 59.720 52.381 15.06 15.06 45.02 3.71
1237 1290 1.280421 GTTGGAGCCAGTGAATCTCCT 59.720 52.381 19.68 0.00 45.04 3.69
1238 1291 1.198713 TGGAGCCAGTGAATCTCCTC 58.801 55.000 19.68 5.48 45.04 3.71
1239 1292 0.103937 GGAGCCAGTGAATCTCCTCG 59.896 60.000 14.80 0.00 42.31 4.63
1240 1293 1.107114 GAGCCAGTGAATCTCCTCGA 58.893 55.000 0.00 0.00 0.00 4.04
1241 1294 1.686052 GAGCCAGTGAATCTCCTCGAT 59.314 52.381 0.00 0.00 0.00 3.59
1242 1295 2.102252 GAGCCAGTGAATCTCCTCGATT 59.898 50.000 0.00 0.00 44.87 3.34
1243 1296 3.300388 AGCCAGTGAATCTCCTCGATTA 58.700 45.455 0.00 0.00 42.31 1.75
1244 1297 3.706594 AGCCAGTGAATCTCCTCGATTAA 59.293 43.478 0.00 0.00 42.31 1.40
1245 1298 4.346418 AGCCAGTGAATCTCCTCGATTAAT 59.654 41.667 0.00 0.00 42.31 1.40
1246 1299 5.059833 GCCAGTGAATCTCCTCGATTAATT 58.940 41.667 0.00 0.00 42.31 1.40
1247 1300 6.042093 AGCCAGTGAATCTCCTCGATTAATTA 59.958 38.462 0.00 0.00 42.31 1.40
1248 1301 6.146347 GCCAGTGAATCTCCTCGATTAATTAC 59.854 42.308 0.00 0.00 42.31 1.89
1249 1302 6.647067 CCAGTGAATCTCCTCGATTAATTACC 59.353 42.308 0.00 0.00 42.31 2.85
1250 1303 7.437748 CAGTGAATCTCCTCGATTAATTACCT 58.562 38.462 0.00 0.00 42.31 3.08
1251 1304 7.928706 CAGTGAATCTCCTCGATTAATTACCTT 59.071 37.037 0.00 0.00 42.31 3.50
1252 1305 8.487028 AGTGAATCTCCTCGATTAATTACCTTT 58.513 33.333 0.00 0.00 42.31 3.11
1253 1306 9.110502 GTGAATCTCCTCGATTAATTACCTTTT 57.889 33.333 0.00 0.00 42.31 2.27
1254 1307 9.681062 TGAATCTCCTCGATTAATTACCTTTTT 57.319 29.630 0.00 0.00 42.31 1.94
1258 1311 9.052759 TCTCCTCGATTAATTACCTTTTTATGC 57.947 33.333 0.00 0.00 0.00 3.14
1259 1312 8.974060 TCCTCGATTAATTACCTTTTTATGCT 57.026 30.769 0.00 0.00 0.00 3.79
1260 1313 9.403583 TCCTCGATTAATTACCTTTTTATGCTT 57.596 29.630 0.00 0.00 0.00 3.91
1274 1327 3.303462 TGCTTATGCATGGGCCTTT 57.697 47.368 10.16 0.00 45.31 3.11
1275 1328 1.570803 TGCTTATGCATGGGCCTTTT 58.429 45.000 10.16 0.00 45.31 2.27
1276 1329 2.744760 TGCTTATGCATGGGCCTTTTA 58.255 42.857 10.16 0.00 45.31 1.52
1277 1330 3.102972 TGCTTATGCATGGGCCTTTTAA 58.897 40.909 10.16 0.00 45.31 1.52
1278 1331 3.132646 TGCTTATGCATGGGCCTTTTAAG 59.867 43.478 10.16 2.49 45.31 1.85
1279 1332 3.721035 CTTATGCATGGGCCTTTTAAGC 58.279 45.455 10.16 0.00 40.13 3.09
1280 1333 1.570803 ATGCATGGGCCTTTTAAGCA 58.429 45.000 4.53 4.76 40.13 3.91
1281 1334 1.346062 TGCATGGGCCTTTTAAGCAA 58.654 45.000 4.53 0.00 40.13 3.91
1282 1335 1.696336 TGCATGGGCCTTTTAAGCAAA 59.304 42.857 4.53 0.00 40.13 3.68
1283 1336 2.305343 TGCATGGGCCTTTTAAGCAAAT 59.695 40.909 4.53 0.00 40.13 2.32
1284 1337 2.938451 GCATGGGCCTTTTAAGCAAATC 59.062 45.455 4.53 0.00 0.00 2.17
1285 1338 3.369787 GCATGGGCCTTTTAAGCAAATCT 60.370 43.478 4.53 0.00 0.00 2.40
1286 1339 4.835678 CATGGGCCTTTTAAGCAAATCTT 58.164 39.130 4.53 0.00 38.79 2.40
1287 1340 4.270245 TGGGCCTTTTAAGCAAATCTTG 57.730 40.909 4.53 0.00 36.25 3.02
1288 1341 3.645687 TGGGCCTTTTAAGCAAATCTTGT 59.354 39.130 4.53 0.00 36.25 3.16
1289 1342 3.996363 GGGCCTTTTAAGCAAATCTTGTG 59.004 43.478 0.84 0.00 36.25 3.33
1290 1343 3.996363 GGCCTTTTAAGCAAATCTTGTGG 59.004 43.478 0.00 0.00 36.25 4.17
1291 1344 4.262420 GGCCTTTTAAGCAAATCTTGTGGA 60.262 41.667 0.00 0.00 36.25 4.02
1292 1345 5.296748 GCCTTTTAAGCAAATCTTGTGGAA 58.703 37.500 0.00 0.00 36.25 3.53
1293 1346 5.757808 GCCTTTTAAGCAAATCTTGTGGAAA 59.242 36.000 0.00 0.00 36.25 3.13
1325 1378 6.992123 TCATATATTTGACTTGCTTGGACGAT 59.008 34.615 0.00 0.00 0.00 3.73
1327 1380 8.773645 CATATATTTGACTTGCTTGGACGATAA 58.226 33.333 0.00 0.00 0.00 1.75
1354 1407 9.948747 AGTATACTTGGTATTTACTACTCCCTT 57.051 33.333 0.00 0.00 30.79 3.95
1364 1417 9.070179 GTATTTACTACTCCCTTTGTTCCAAAA 57.930 33.333 0.00 0.00 0.00 2.44
1371 1424 5.897250 ACTCCCTTTGTTCCAAAATACTTGT 59.103 36.000 0.00 0.00 0.00 3.16
1374 1427 6.553100 TCCCTTTGTTCCAAAATACTTGTCAT 59.447 34.615 0.00 0.00 0.00 3.06
1375 1428 6.646240 CCCTTTGTTCCAAAATACTTGTCATG 59.354 38.462 0.00 0.00 0.00 3.07
1376 1429 6.646240 CCTTTGTTCCAAAATACTTGTCATGG 59.354 38.462 0.00 0.00 0.00 3.66
1377 1430 6.723298 TTGTTCCAAAATACTTGTCATGGT 57.277 33.333 0.00 0.00 0.00 3.55
1395 1448 6.423604 GTCATGGTTGGTTTTAGTCAATTTGG 59.576 38.462 0.00 0.00 0.00 3.28
1483 1540 0.874390 ATGTTGTCACACGTGCCATC 59.126 50.000 17.22 9.64 35.03 3.51
1491 1548 1.464608 CACACGTGCCATCCTAGTTTG 59.535 52.381 17.22 0.00 0.00 2.93
1556 1615 7.276878 CGGGCTAAAAATTTGGTTTATTGTAGG 59.723 37.037 0.00 0.00 0.00 3.18
1615 1674 1.633774 ACTGGTGGTAGTGACTGGAG 58.366 55.000 0.00 0.00 0.00 3.86
1877 1936 5.055265 TCTAGTAGTGATCAGAAGGGGAG 57.945 47.826 0.00 0.00 0.00 4.30
1894 1953 4.418190 AGGGGAGCATCATAGAATTCCTTT 59.582 41.667 0.65 0.00 36.25 3.11
2013 2074 7.381678 GGAAATTACTCACCGTAGATCATACAC 59.618 40.741 0.00 0.00 0.00 2.90
2067 2128 3.817647 GCCTCTATTGCACTTATTCCAGG 59.182 47.826 0.00 0.00 0.00 4.45
2233 2294 6.465035 GCCCAGGTCAAAGATCTCTGTATAAT 60.465 42.308 0.00 0.00 0.00 1.28
2285 2346 3.316308 GGATGTTGGATATGTGCAGGTTC 59.684 47.826 0.00 0.00 0.00 3.62
2288 2349 2.747446 GTTGGATATGTGCAGGTTCGTT 59.253 45.455 0.00 0.00 0.00 3.85
2310 2371 6.035220 CGTTTTCAGCCTGTCAACGTATTATA 59.965 38.462 17.42 0.00 36.37 0.98
2485 2549 3.624777 CAATGGAAGGCTTGTATCAGGT 58.375 45.455 3.46 0.00 0.00 4.00
2486 2550 2.787473 TGGAAGGCTTGTATCAGGTG 57.213 50.000 3.46 0.00 0.00 4.00
2487 2551 2.265367 TGGAAGGCTTGTATCAGGTGA 58.735 47.619 3.46 0.00 0.00 4.02
2488 2552 2.846206 TGGAAGGCTTGTATCAGGTGAT 59.154 45.455 3.46 0.00 38.51 3.06
2489 2553 3.266772 TGGAAGGCTTGTATCAGGTGATT 59.733 43.478 3.46 0.00 36.05 2.57
2490 2554 3.879892 GGAAGGCTTGTATCAGGTGATTC 59.120 47.826 3.46 0.00 36.05 2.52
2491 2555 3.567478 AGGCTTGTATCAGGTGATTCC 57.433 47.619 0.00 0.00 36.05 3.01
2765 2829 3.922240 GCTTTGGAATACATGCAACACTG 59.078 43.478 0.00 0.00 39.28 3.66
2978 3125 2.896044 TGCAAGCCAATGGTTTATCACA 59.104 40.909 0.00 0.00 0.00 3.58
3035 3182 3.710209 AGAGTTTGGGATGTCTTCCTG 57.290 47.619 4.85 0.00 44.75 3.86
3091 3243 3.537580 TGTTTCGTGTTTACCTGAGCTT 58.462 40.909 0.00 0.00 0.00 3.74
3092 3244 4.695396 TGTTTCGTGTTTACCTGAGCTTA 58.305 39.130 0.00 0.00 0.00 3.09
3151 3305 6.204688 ACATGTTTGCTTCATATACGGTATGG 59.795 38.462 10.86 3.49 0.00 2.74
3369 3523 4.609301 TCAATATGGGAGTTCTTTTGGGG 58.391 43.478 0.00 0.00 0.00 4.96
3586 3851 6.023603 TGAGGTCCTACTCAAATAGTTTCCT 58.976 40.000 0.00 0.00 44.03 3.36
3587 3852 7.186972 TGAGGTCCTACTCAAATAGTTTCCTA 58.813 38.462 0.00 0.00 44.03 2.94
3588 3853 7.342284 TGAGGTCCTACTCAAATAGTTTCCTAG 59.658 40.741 0.00 0.00 44.03 3.02
3589 3854 7.190501 AGGTCCTACTCAAATAGTTTCCTAGT 58.809 38.462 0.00 0.00 39.80 2.57
3590 3855 8.342270 AGGTCCTACTCAAATAGTTTCCTAGTA 58.658 37.037 0.00 0.00 39.80 1.82
3595 3863 9.719279 CTACTCAAATAGTTTCCTAGTAAGACG 57.281 37.037 0.00 0.00 39.80 4.18
3600 3868 7.934855 AATAGTTTCCTAGTAAGACGTGAGA 57.065 36.000 0.00 0.00 0.00 3.27
3603 3871 7.229581 AGTTTCCTAGTAAGACGTGAGATTT 57.770 36.000 0.00 0.00 0.00 2.17
3615 3883 4.298332 ACGTGAGATTTTGTTGCCATTTC 58.702 39.130 0.00 0.00 0.00 2.17
3616 3884 4.037923 ACGTGAGATTTTGTTGCCATTTCT 59.962 37.500 0.00 0.00 0.00 2.52
3617 3885 5.240623 ACGTGAGATTTTGTTGCCATTTCTA 59.759 36.000 0.00 0.00 0.00 2.10
3618 3886 6.071952 ACGTGAGATTTTGTTGCCATTTCTAT 60.072 34.615 0.00 0.00 0.00 1.98
3619 3887 6.808212 CGTGAGATTTTGTTGCCATTTCTATT 59.192 34.615 0.00 0.00 0.00 1.73
3620 3888 7.967854 CGTGAGATTTTGTTGCCATTTCTATTA 59.032 33.333 0.00 0.00 0.00 0.98
3621 3889 9.807649 GTGAGATTTTGTTGCCATTTCTATTAT 57.192 29.630 0.00 0.00 0.00 1.28
3627 3895 9.474313 TTTTGTTGCCATTTCTATTATACTCCT 57.526 29.630 0.00 0.00 0.00 3.69
3628 3896 9.474313 TTTGTTGCCATTTCTATTATACTCCTT 57.526 29.630 0.00 0.00 0.00 3.36
3629 3897 9.474313 TTGTTGCCATTTCTATTATACTCCTTT 57.526 29.630 0.00 0.00 0.00 3.11
3630 3898 9.474313 TGTTGCCATTTCTATTATACTCCTTTT 57.526 29.630 0.00 0.00 0.00 2.27
3631 3899 9.736023 GTTGCCATTTCTATTATACTCCTTTTG 57.264 33.333 0.00 0.00 0.00 2.44
3632 3900 9.474313 TTGCCATTTCTATTATACTCCTTTTGT 57.526 29.630 0.00 0.00 0.00 2.83
3633 3901 8.902806 TGCCATTTCTATTATACTCCTTTTGTG 58.097 33.333 0.00 0.00 0.00 3.33
3634 3902 8.903820 GCCATTTCTATTATACTCCTTTTGTGT 58.096 33.333 0.00 0.00 0.00 3.72
3864 4132 1.727511 TTGGTGTGCTGTGCTGCTTC 61.728 55.000 0.00 0.00 0.00 3.86
3895 4163 9.773328 TGAAAGACATATTTTAAAGAATCGCTG 57.227 29.630 0.00 0.00 0.00 5.18
4123 4391 8.664669 ATCCTATTTCTATTGTTTGGTGGTTT 57.335 30.769 0.00 0.00 0.00 3.27
4138 4406 1.202867 TGGTTTGTGGCTGCTGTATCA 60.203 47.619 0.00 0.00 0.00 2.15
4141 4409 1.522668 TTGTGGCTGCTGTATCACAC 58.477 50.000 7.94 2.70 39.46 3.82
4149 4417 3.430790 GCTGCTGTATCACACATGGTAGA 60.431 47.826 0.00 0.00 36.29 2.59
4152 4420 4.122776 GCTGTATCACACATGGTAGAAGG 58.877 47.826 0.00 0.00 36.29 3.46
4154 4422 5.595885 CTGTATCACACATGGTAGAAGGAG 58.404 45.833 0.00 0.00 36.29 3.69
4157 4425 5.860941 ATCACACATGGTAGAAGGAGTAG 57.139 43.478 0.00 0.00 0.00 2.57
4158 4426 4.673968 TCACACATGGTAGAAGGAGTAGT 58.326 43.478 0.00 0.00 0.00 2.73
4159 4427 5.823312 TCACACATGGTAGAAGGAGTAGTA 58.177 41.667 0.00 0.00 0.00 1.82
4160 4428 6.432581 TCACACATGGTAGAAGGAGTAGTAT 58.567 40.000 0.00 0.00 0.00 2.12
4176 4444 3.708563 AGTATGTTTGTGCGTTTGCTT 57.291 38.095 0.00 0.00 43.34 3.91
4388 4656 1.946283 GCTGTTAGCCAGGTCTTGTCC 60.946 57.143 0.00 0.00 41.81 4.02
4422 4690 8.068892 TGTTGGTAAAAAGTAACATGGTTCTT 57.931 30.769 0.00 0.00 0.00 2.52
4441 4709 7.080724 GGTTCTTGTTTTGCAAAAACAAATCA 58.919 30.769 25.40 15.14 45.85 2.57
4442 4710 7.592903 GGTTCTTGTTTTGCAAAAACAAATCAA 59.407 29.630 25.40 20.57 45.85 2.57
4443 4711 8.416424 GTTCTTGTTTTGCAAAAACAAATCAAC 58.584 29.630 25.40 22.58 45.85 3.18
4444 4712 7.080724 TCTTGTTTTGCAAAAACAAATCAACC 58.919 30.769 25.40 10.05 45.85 3.77
4453 4721 2.793278 ACAAATCAACCGCCTTGTTC 57.207 45.000 0.00 0.00 0.00 3.18
4458 4726 4.499037 AATCAACCGCCTTGTTCTTTAC 57.501 40.909 0.00 0.00 0.00 2.01
4482 4750 3.599938 CGTTGTATAGAGCGATCATCACG 59.400 47.826 2.38 0.00 0.00 4.35
4483 4751 4.537965 GTTGTATAGAGCGATCATCACGT 58.462 43.478 2.38 0.00 0.00 4.49
4484 4752 5.614013 CGTTGTATAGAGCGATCATCACGTA 60.614 44.000 2.38 0.00 0.00 3.57
4485 4753 5.278964 TGTATAGAGCGATCATCACGTAC 57.721 43.478 2.38 0.00 0.00 3.67
4489 4757 2.125664 GCGATCATCACGTACTCGC 58.874 57.895 7.51 7.51 46.32 5.03
4503 4771 0.589708 ACTCGCCGCTTTGTTTTACC 59.410 50.000 0.00 0.00 0.00 2.85
4515 4783 7.043656 CCGCTTTGTTTTACCTTTTCTAAGTTG 60.044 37.037 0.00 0.00 0.00 3.16
4519 4787 7.875327 TGTTTTACCTTTTCTAAGTTGAGCT 57.125 32.000 0.00 0.00 0.00 4.09
4523 4793 4.137543 ACCTTTTCTAAGTTGAGCTGTGG 58.862 43.478 0.00 0.00 0.00 4.17
4593 4863 6.311723 CCGGACAACTGTGAATATTTGTTAC 58.688 40.000 0.00 0.00 32.34 2.50
4666 4936 2.497107 ATGTTGCCTTGATTATGCGC 57.503 45.000 0.00 0.00 0.00 6.09
4677 4947 1.164041 ATTATGCGCCGCTTGTACCC 61.164 55.000 11.67 0.00 0.00 3.69
4752 5319 1.620822 AAAACATGCCTCGCCTCTTT 58.379 45.000 0.00 0.00 0.00 2.52
4755 5322 0.250901 ACATGCCTCGCCTCTTTGTT 60.251 50.000 0.00 0.00 0.00 2.83
4757 5324 1.589716 ATGCCTCGCCTCTTTGTTGC 61.590 55.000 0.00 0.00 0.00 4.17
4814 5434 4.479993 GTGCGGCATGCCCTCTCT 62.480 66.667 30.79 0.00 45.60 3.10
4816 5436 3.207669 GCGGCATGCCCTCTCTTG 61.208 66.667 30.79 15.74 37.76 3.02
4817 5437 2.586245 CGGCATGCCCTCTCTTGA 59.414 61.111 30.79 0.00 0.00 3.02
4821 5441 1.615384 GGCATGCCCTCTCTTGACTTT 60.615 52.381 27.24 0.00 0.00 2.66
4822 5442 1.471684 GCATGCCCTCTCTTGACTTTG 59.528 52.381 6.36 0.00 0.00 2.77
4823 5443 1.471684 CATGCCCTCTCTTGACTTTGC 59.528 52.381 0.00 0.00 0.00 3.68
4824 5444 0.767375 TGCCCTCTCTTGACTTTGCT 59.233 50.000 0.00 0.00 0.00 3.91
4826 5446 2.573462 TGCCCTCTCTTGACTTTGCTAT 59.427 45.455 0.00 0.00 0.00 2.97
4828 5448 3.376546 GCCCTCTCTTGACTTTGCTATTG 59.623 47.826 0.00 0.00 0.00 1.90
4829 5449 3.376546 CCCTCTCTTGACTTTGCTATTGC 59.623 47.826 0.00 0.00 40.20 3.56
4832 5452 3.009473 TCTCTTGACTTTGCTATTGCCCT 59.991 43.478 0.00 0.00 38.71 5.19
4833 5453 3.084039 TCTTGACTTTGCTATTGCCCTG 58.916 45.455 0.00 0.00 38.71 4.45
4837 5457 2.360165 GACTTTGCTATTGCCCTGATGG 59.640 50.000 0.00 0.00 38.71 3.51
4847 5467 2.016961 CCCTGATGGCGTTTCGATG 58.983 57.895 0.00 0.00 0.00 3.84
4848 5468 1.439353 CCCTGATGGCGTTTCGATGG 61.439 60.000 0.00 0.00 0.00 3.51
4849 5469 0.744414 CCTGATGGCGTTTCGATGGT 60.744 55.000 0.00 0.00 0.00 3.55
4850 5470 0.374758 CTGATGGCGTTTCGATGGTG 59.625 55.000 0.00 0.00 0.00 4.17
4851 5471 1.024046 TGATGGCGTTTCGATGGTGG 61.024 55.000 0.00 0.00 0.00 4.61
4852 5472 1.002624 ATGGCGTTTCGATGGTGGT 60.003 52.632 0.00 0.00 0.00 4.16
4853 5473 1.305219 ATGGCGTTTCGATGGTGGTG 61.305 55.000 0.00 0.00 0.00 4.17
4854 5474 1.669760 GGCGTTTCGATGGTGGTGA 60.670 57.895 0.00 0.00 0.00 4.02
4857 5477 1.720805 CGTTTCGATGGTGGTGATGA 58.279 50.000 0.00 0.00 0.00 2.92
4859 5479 2.009774 GTTTCGATGGTGGTGATGAGG 58.990 52.381 0.00 0.00 0.00 3.86
4861 5481 1.275666 TCGATGGTGGTGATGAGGTT 58.724 50.000 0.00 0.00 0.00 3.50
4862 5482 2.462723 TCGATGGTGGTGATGAGGTTA 58.537 47.619 0.00 0.00 0.00 2.85
4866 5486 3.627395 TGGTGGTGATGAGGTTATGTC 57.373 47.619 0.00 0.00 0.00 3.06
4868 5488 3.523157 TGGTGGTGATGAGGTTATGTCAT 59.477 43.478 0.00 0.00 37.36 3.06
4882 5502 9.141400 GAGGTTATGTCATCTATATTTTCGGAC 57.859 37.037 0.00 0.00 0.00 4.79
4883 5503 7.813148 AGGTTATGTCATCTATATTTTCGGACG 59.187 37.037 0.00 0.00 0.00 4.79
4884 5504 7.063074 GGTTATGTCATCTATATTTTCGGACGG 59.937 40.741 0.00 0.00 0.00 4.79
4886 5506 5.769367 TGTCATCTATATTTTCGGACGGAG 58.231 41.667 0.00 0.00 0.00 4.63
4887 5507 5.162075 GTCATCTATATTTTCGGACGGAGG 58.838 45.833 0.00 0.00 0.00 4.30
4888 5508 4.219944 TCATCTATATTTTCGGACGGAGGG 59.780 45.833 0.00 0.00 0.00 4.30
4889 5509 3.836146 TCTATATTTTCGGACGGAGGGA 58.164 45.455 0.00 0.00 0.00 4.20
4891 5511 1.117150 TATTTTCGGACGGAGGGAGG 58.883 55.000 0.00 0.00 0.00 4.30
4892 5512 0.616679 ATTTTCGGACGGAGGGAGGA 60.617 55.000 0.00 0.00 0.00 3.71
4893 5513 0.616679 TTTTCGGACGGAGGGAGGAT 60.617 55.000 0.00 0.00 0.00 3.24
4895 5515 0.259647 TTCGGACGGAGGGAGGATAA 59.740 55.000 0.00 0.00 0.00 1.75
4896 5516 0.178998 TCGGACGGAGGGAGGATAAG 60.179 60.000 0.00 0.00 0.00 1.73
4897 5517 0.467659 CGGACGGAGGGAGGATAAGT 60.468 60.000 0.00 0.00 0.00 2.24
4899 5519 1.133419 GGACGGAGGGAGGATAAGTCT 60.133 57.143 0.00 0.00 0.00 3.24
4900 5520 2.668625 GACGGAGGGAGGATAAGTCTT 58.331 52.381 0.00 0.00 0.00 3.01
4901 5521 3.032459 GACGGAGGGAGGATAAGTCTTT 58.968 50.000 0.00 0.00 0.00 2.52
4902 5522 3.451540 GACGGAGGGAGGATAAGTCTTTT 59.548 47.826 0.00 0.00 0.00 2.27
4904 5524 5.028131 ACGGAGGGAGGATAAGTCTTTTTA 58.972 41.667 0.00 0.00 0.00 1.52
4905 5525 5.128991 ACGGAGGGAGGATAAGTCTTTTTAG 59.871 44.000 0.00 0.00 0.00 1.85
4907 5527 6.584488 GGAGGGAGGATAAGTCTTTTTAGAC 58.416 44.000 0.00 0.00 39.00 2.59
4908 5528 6.156429 GGAGGGAGGATAAGTCTTTTTAGACA 59.844 42.308 7.92 0.00 41.02 3.41
4909 5529 7.147461 GGAGGGAGGATAAGTCTTTTTAGACAT 60.147 40.741 7.92 0.00 41.02 3.06
4912 5532 8.894731 GGGAGGATAAGTCTTTTTAGACATTTC 58.105 37.037 7.92 1.39 41.02 2.17
4920 5540 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
4922 5542 9.528018 GTCTTTTTAGACATTTCAAATGGACAA 57.472 29.630 14.70 2.31 38.59 3.18
4924 5544 9.311916 CTTTTTAGACATTTCAAATGGACAACA 57.688 29.630 14.70 0.00 0.00 3.33
4925 5545 9.658799 TTTTTAGACATTTCAAATGGACAACAA 57.341 25.926 14.70 2.19 0.00 2.83
4927 5547 6.219417 AGACATTTCAAATGGACAACAACA 57.781 33.333 14.70 0.00 0.00 3.33
4928 5548 6.819284 AGACATTTCAAATGGACAACAACAT 58.181 32.000 14.70 0.00 0.00 2.71
4929 5549 7.950512 AGACATTTCAAATGGACAACAACATA 58.049 30.769 14.70 0.00 0.00 2.29
4930 5550 7.867403 AGACATTTCAAATGGACAACAACATAC 59.133 33.333 14.70 0.00 0.00 2.39
4932 5552 4.757799 TCAAATGGACAACAACATACGG 57.242 40.909 0.00 0.00 0.00 4.02
4933 5553 4.390264 TCAAATGGACAACAACATACGGA 58.610 39.130 0.00 0.00 0.00 4.69
4934 5554 5.007034 TCAAATGGACAACAACATACGGAT 58.993 37.500 0.00 0.00 0.00 4.18
4935 5555 4.963276 AATGGACAACAACATACGGATG 57.037 40.909 5.94 5.94 39.16 3.51
4937 5557 4.538746 TGGACAACAACATACGGATGTA 57.461 40.909 15.10 0.00 45.93 2.29
4938 5558 5.092554 TGGACAACAACATACGGATGTAT 57.907 39.130 15.10 2.23 45.93 2.29
4978 5598 8.734386 AGAATGTAGATTCACTCATTTTGTTCC 58.266 33.333 14.46 0.00 40.59 3.62
4979 5599 6.480524 TGTAGATTCACTCATTTTGTTCCG 57.519 37.500 0.00 0.00 0.00 4.30
4980 5600 4.425577 AGATTCACTCATTTTGTTCCGC 57.574 40.909 0.00 0.00 0.00 5.54
4981 5601 3.820467 AGATTCACTCATTTTGTTCCGCA 59.180 39.130 0.00 0.00 0.00 5.69
4982 5602 4.460382 AGATTCACTCATTTTGTTCCGCAT 59.540 37.500 0.00 0.00 0.00 4.73
4983 5603 3.557577 TCACTCATTTTGTTCCGCATG 57.442 42.857 0.00 0.00 0.00 4.06
4985 5605 4.068599 TCACTCATTTTGTTCCGCATGTA 58.931 39.130 0.00 0.00 0.00 2.29
4986 5606 4.154015 TCACTCATTTTGTTCCGCATGTAG 59.846 41.667 0.00 0.00 0.00 2.74
4987 5607 4.072131 ACTCATTTTGTTCCGCATGTAGT 58.928 39.130 0.00 0.00 0.00 2.73
4989 5609 4.068599 TCATTTTGTTCCGCATGTAGTCA 58.931 39.130 0.00 0.00 0.00 3.41
4992 5612 2.831685 TGTTCCGCATGTAGTCACTT 57.168 45.000 0.00 0.00 0.00 3.16
4993 5613 2.412870 TGTTCCGCATGTAGTCACTTG 58.587 47.619 0.00 0.00 33.92 3.16
4994 5614 2.224185 TGTTCCGCATGTAGTCACTTGT 60.224 45.455 0.00 0.00 33.46 3.16
4995 5615 2.806244 GTTCCGCATGTAGTCACTTGTT 59.194 45.455 0.00 0.00 33.46 2.83
4996 5616 2.412870 TCCGCATGTAGTCACTTGTTG 58.587 47.619 0.00 0.00 33.46 3.33
4997 5617 1.464608 CCGCATGTAGTCACTTGTTGG 59.535 52.381 0.00 0.00 33.46 3.77
4998 5618 2.412870 CGCATGTAGTCACTTGTTGGA 58.587 47.619 0.00 0.00 33.46 3.53
5000 5620 3.249799 CGCATGTAGTCACTTGTTGGAAA 59.750 43.478 0.00 0.00 33.46 3.13
5032 5652 8.539117 AAAGACTTATATTTGGGAATGAAGGG 57.461 34.615 0.00 0.00 30.05 3.95
5047 5797 7.342026 GGGAATGAAGGGAGTATTACAATTTGT 59.658 37.037 7.30 7.30 0.00 2.83
5134 5884 9.800433 ATCAAAATATGCAATGTTTTCGTCATA 57.200 25.926 0.00 0.00 42.86 2.15
5349 6103 7.489113 CGGGGCAATTATTCATCTTATTTATGC 59.511 37.037 0.00 0.00 0.00 3.14
5441 6195 5.163571 GGAATCATTTTTCTCCTTGAGAGGC 60.164 44.000 0.00 0.00 43.44 4.70
5494 6353 2.300956 TCCCACAAATGCAGGCTTTA 57.699 45.000 0.00 0.00 0.00 1.85
5555 6414 4.450757 CGTATCTGGTGTTGTTGACAATGA 59.549 41.667 0.00 0.00 40.65 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.482163 TGTTTTTCAAGGGGGATTCAATC 57.518 39.130 0.00 0.00 0.00 2.67
1 2 5.280624 CCATGTTTTTCAAGGGGGATTCAAT 60.281 40.000 0.00 0.00 31.94 2.57
2 3 4.041444 CCATGTTTTTCAAGGGGGATTCAA 59.959 41.667 0.00 0.00 31.94 2.69
3 4 3.582208 CCATGTTTTTCAAGGGGGATTCA 59.418 43.478 0.00 0.00 31.94 2.57
4 5 3.619733 GCCATGTTTTTCAAGGGGGATTC 60.620 47.826 0.00 0.00 35.66 2.52
5 6 2.305635 GCCATGTTTTTCAAGGGGGATT 59.694 45.455 0.00 0.00 35.66 3.01
6 7 1.908619 GCCATGTTTTTCAAGGGGGAT 59.091 47.619 0.00 0.00 35.66 3.85
7 8 1.347062 GCCATGTTTTTCAAGGGGGA 58.653 50.000 0.00 0.00 35.66 4.81
8 9 0.324614 GGCCATGTTTTTCAAGGGGG 59.675 55.000 0.00 0.00 35.66 5.40
61 62 2.100197 GCCTACCCATGGGAAAGAAAC 58.900 52.381 38.07 19.67 38.96 2.78
62 63 2.000048 AGCCTACCCATGGGAAAGAAA 59.000 47.619 38.07 13.25 38.96 2.52
63 64 1.564348 GAGCCTACCCATGGGAAAGAA 59.436 52.381 38.07 14.99 38.96 2.52
64 65 1.213296 GAGCCTACCCATGGGAAAGA 58.787 55.000 38.07 17.32 38.96 2.52
104 105 2.361610 ATTTCCAGGGCGTGCAGG 60.362 61.111 1.01 1.01 0.00 4.85
127 128 7.623297 GCTCACAAAAGGAAAAACAACGATTTT 60.623 33.333 0.00 0.00 33.13 1.82
136 137 1.516864 CGCGCTCACAAAAGGAAAAAC 59.483 47.619 5.56 0.00 0.00 2.43
206 211 5.050769 CGTTATTCGGGTCAAGATCTGATTG 60.051 44.000 0.00 0.00 34.39 2.67
207 212 5.050490 CGTTATTCGGGTCAAGATCTGATT 58.950 41.667 0.00 0.00 34.39 2.57
226 231 3.981416 CAGCAGATTAGATTAGCGCGTTA 59.019 43.478 8.43 2.16 0.00 3.18
540 579 2.046314 GTGGTGGGTGGATCGTGG 60.046 66.667 0.00 0.00 0.00 4.94
545 584 3.646715 CGTGGGTGGTGGGTGGAT 61.647 66.667 0.00 0.00 0.00 3.41
549 588 2.448153 TTACCGTGGGTGGTGGGT 60.448 61.111 0.00 0.00 43.68 4.51
559 598 1.408266 CCAGGGGAATTCCTTACCGTG 60.408 57.143 23.63 16.81 46.57 4.94
560 599 0.916809 CCAGGGGAATTCCTTACCGT 59.083 55.000 23.63 6.17 36.02 4.83
561 600 0.465642 GCCAGGGGAATTCCTTACCG 60.466 60.000 23.63 12.15 36.02 4.02
582 621 1.725931 GCAAACGAATCTGTCCAAGCG 60.726 52.381 0.00 0.00 0.00 4.68
585 624 1.266718 GCTGCAAACGAATCTGTCCAA 59.733 47.619 0.00 0.00 0.00 3.53
599 638 4.212004 GCTCACGAATATAGAATGCTGCAA 59.788 41.667 6.36 0.00 0.00 4.08
611 650 3.815401 GCCACCTTATTGCTCACGAATAT 59.185 43.478 0.00 0.00 0.00 1.28
682 726 3.541711 GTCAACCGAGATCAAACAAACG 58.458 45.455 0.00 0.00 0.00 3.60
772 819 4.200092 GTCAGTTGAACCCTGAGAAACTT 58.800 43.478 0.00 0.00 39.51 2.66
775 822 2.158667 GGGTCAGTTGAACCCTGAGAAA 60.159 50.000 4.81 0.00 46.18 2.52
860 909 7.325338 CACAGTCTGAACAAAAATCAAGCTATG 59.675 37.037 6.91 0.00 0.00 2.23
906 955 6.347725 CGGCTAAACAATAGATGTATGAAGGC 60.348 42.308 0.00 0.00 42.99 4.35
949 998 6.707440 ACACCATGTCACTAATTTTCACAA 57.293 33.333 0.00 0.00 0.00 3.33
971 1020 7.145932 ACCTTCACTACATTGCAAGAAATAC 57.854 36.000 4.94 0.00 0.00 1.89
1075 1124 6.185399 CGTCTTTATAAAGCCAAATCTGTCG 58.815 40.000 18.68 7.61 35.99 4.35
1099 1148 0.875059 CCGGAGAGTTGCTTTGTTCC 59.125 55.000 0.00 0.00 0.00 3.62
1117 1166 2.373224 CTGCTTTTCAGAATCCCCTCC 58.627 52.381 0.00 0.00 45.72 4.30
1199 1252 6.484643 GCTCCAACTTATCAAATAGATGAGCA 59.515 38.462 0.00 0.00 42.48 4.26
1201 1254 6.994496 TGGCTCCAACTTATCAAATAGATGAG 59.006 38.462 0.00 0.00 43.86 2.90
1210 1263 4.365514 TTCACTGGCTCCAACTTATCAA 57.634 40.909 0.00 0.00 0.00 2.57
1213 1266 4.384647 GGAGATTCACTGGCTCCAACTTAT 60.385 45.833 0.00 0.00 45.89 1.73
1214 1267 3.055094 GGAGATTCACTGGCTCCAACTTA 60.055 47.826 0.00 0.00 45.89 2.24
1220 1273 0.103937 CGAGGAGATTCACTGGCTCC 59.896 60.000 0.00 0.00 46.75 4.70
1221 1274 1.107114 TCGAGGAGATTCACTGGCTC 58.893 55.000 0.00 0.00 0.00 4.70
1222 1275 1.786937 ATCGAGGAGATTCACTGGCT 58.213 50.000 0.00 0.00 35.73 4.75
1223 1276 2.611225 AATCGAGGAGATTCACTGGC 57.389 50.000 0.00 0.00 45.95 4.85
1224 1277 6.647067 GGTAATTAATCGAGGAGATTCACTGG 59.353 42.308 0.00 0.00 45.95 4.00
1225 1278 7.437748 AGGTAATTAATCGAGGAGATTCACTG 58.562 38.462 0.00 0.00 45.95 3.66
1226 1279 7.604657 AGGTAATTAATCGAGGAGATTCACT 57.395 36.000 0.00 0.00 45.95 3.41
1227 1280 8.664211 AAAGGTAATTAATCGAGGAGATTCAC 57.336 34.615 0.00 0.00 45.95 3.18
1228 1281 9.681062 AAAAAGGTAATTAATCGAGGAGATTCA 57.319 29.630 0.00 0.00 45.95 2.57
1232 1285 9.052759 GCATAAAAAGGTAATTAATCGAGGAGA 57.947 33.333 0.00 0.00 0.00 3.71
1233 1286 9.057089 AGCATAAAAAGGTAATTAATCGAGGAG 57.943 33.333 0.00 0.00 0.00 3.69
1234 1287 8.974060 AGCATAAAAAGGTAATTAATCGAGGA 57.026 30.769 0.00 0.00 0.00 3.71
1257 1310 3.721035 CTTAAAAGGCCCATGCATAAGC 58.279 45.455 10.85 10.85 40.13 3.09
1258 1311 3.132646 TGCTTAAAAGGCCCATGCATAAG 59.867 43.478 0.00 1.61 40.13 1.73
1259 1312 3.102972 TGCTTAAAAGGCCCATGCATAA 58.897 40.909 0.00 0.00 40.13 1.90
1260 1313 2.744760 TGCTTAAAAGGCCCATGCATA 58.255 42.857 0.00 0.00 40.13 3.14
1261 1314 1.570803 TGCTTAAAAGGCCCATGCAT 58.429 45.000 0.00 0.00 40.13 3.96
1262 1315 1.346062 TTGCTTAAAAGGCCCATGCA 58.654 45.000 0.00 0.00 40.13 3.96
1263 1316 2.470983 TTTGCTTAAAAGGCCCATGC 57.529 45.000 0.00 0.00 0.00 4.06
1264 1317 4.476628 AGATTTGCTTAAAAGGCCCATG 57.523 40.909 0.00 0.00 0.00 3.66
1265 1318 4.286808 ACAAGATTTGCTTAAAAGGCCCAT 59.713 37.500 0.00 0.00 34.31 4.00
1266 1319 3.645687 ACAAGATTTGCTTAAAAGGCCCA 59.354 39.130 0.00 0.00 34.31 5.36
1267 1320 3.996363 CACAAGATTTGCTTAAAAGGCCC 59.004 43.478 0.00 0.00 34.31 5.80
1268 1321 3.996363 CCACAAGATTTGCTTAAAAGGCC 59.004 43.478 0.00 0.00 34.31 5.19
1269 1322 4.881920 TCCACAAGATTTGCTTAAAAGGC 58.118 39.130 0.00 0.00 34.31 4.35
1270 1323 7.095102 CCATTTCCACAAGATTTGCTTAAAAGG 60.095 37.037 0.00 0.00 34.31 3.11
1271 1324 7.442062 ACCATTTCCACAAGATTTGCTTAAAAG 59.558 33.333 0.00 0.00 34.31 2.27
1272 1325 7.278875 ACCATTTCCACAAGATTTGCTTAAAA 58.721 30.769 0.00 0.00 34.31 1.52
1273 1326 6.825610 ACCATTTCCACAAGATTTGCTTAAA 58.174 32.000 0.00 0.00 34.31 1.52
1274 1327 6.418057 ACCATTTCCACAAGATTTGCTTAA 57.582 33.333 0.00 0.00 34.31 1.85
1275 1328 6.183360 ACAACCATTTCCACAAGATTTGCTTA 60.183 34.615 0.00 0.00 34.31 3.09
1276 1329 4.961438 ACCATTTCCACAAGATTTGCTT 57.039 36.364 0.00 0.00 37.29 3.91
1277 1330 4.101430 ACAACCATTTCCACAAGATTTGCT 59.899 37.500 0.00 0.00 0.00 3.91
1278 1331 4.379652 ACAACCATTTCCACAAGATTTGC 58.620 39.130 0.00 0.00 0.00 3.68
1279 1332 5.599732 TGACAACCATTTCCACAAGATTTG 58.400 37.500 0.00 0.00 0.00 2.32
1280 1333 5.867903 TGACAACCATTTCCACAAGATTT 57.132 34.783 0.00 0.00 0.00 2.17
1281 1334 7.722949 ATATGACAACCATTTCCACAAGATT 57.277 32.000 0.00 0.00 36.71 2.40
1282 1335 9.425248 AATATATGACAACCATTTCCACAAGAT 57.575 29.630 0.00 0.00 36.71 2.40
1283 1336 8.821686 AATATATGACAACCATTTCCACAAGA 57.178 30.769 0.00 0.00 36.71 3.02
1284 1337 9.304731 CAAATATATGACAACCATTTCCACAAG 57.695 33.333 0.00 0.00 36.71 3.16
1285 1338 9.029368 TCAAATATATGACAACCATTTCCACAA 57.971 29.630 0.00 0.00 36.71 3.33
1286 1339 8.586879 TCAAATATATGACAACCATTTCCACA 57.413 30.769 0.00 0.00 36.71 4.17
1327 1380 9.948747 AGGGAGTAGTAAATACCAAGTATACTT 57.051 33.333 12.50 12.50 34.67 2.24
1355 1408 6.462207 CCAACCATGACAAGTATTTTGGAACA 60.462 38.462 0.00 0.00 35.28 3.18
1364 1417 7.001674 TGACTAAAACCAACCATGACAAGTAT 58.998 34.615 0.00 0.00 0.00 2.12
1371 1424 6.325028 TCCAAATTGACTAAAACCAACCATGA 59.675 34.615 0.00 0.00 0.00 3.07
1374 1427 5.659079 AGTCCAAATTGACTAAAACCAACCA 59.341 36.000 0.00 0.00 43.65 3.67
1375 1428 6.156748 AGTCCAAATTGACTAAAACCAACC 57.843 37.500 0.00 0.00 43.65 3.77
1395 1448 6.854381 CCAAAATACTTGTCGTGGTTTTAGTC 59.146 38.462 0.00 0.00 0.00 2.59
1556 1615 5.432645 CACTTTCTTATCCTCCTTTCCTCC 58.567 45.833 0.00 0.00 0.00 4.30
1615 1674 6.299141 TGAGGATTCCTTCTAACATAATGCC 58.701 40.000 6.68 0.00 31.76 4.40
1770 1829 8.863049 CACAGAAATGCCTAATAATTCAAACAC 58.137 33.333 0.00 0.00 0.00 3.32
1868 1927 4.042684 GGAATTCTATGATGCTCCCCTTCT 59.957 45.833 5.23 0.00 0.00 2.85
1877 1936 3.316308 ACGGCAAAGGAATTCTATGATGC 59.684 43.478 5.23 9.05 0.00 3.91
1894 1953 5.234752 CAGCACAATATATAAGGTACGGCA 58.765 41.667 0.00 0.00 0.00 5.69
2013 2074 6.455113 GCAAAGTGCAGCAAATTATGAGAATG 60.455 38.462 0.00 0.00 44.26 2.67
2096 2157 5.656416 TGACCAAAGTCTGTCCAAAGAAAAT 59.344 36.000 0.00 0.00 43.91 1.82
2285 2346 0.655733 ACGTTGACAGGCTGAAAACG 59.344 50.000 34.96 34.96 41.59 3.60
2288 2349 7.870954 CCTATATAATACGTTGACAGGCTGAAA 59.129 37.037 23.66 12.27 0.00 2.69
2485 2549 5.048782 CCAAAGAAGTTCAATCACGGAATCA 60.049 40.000 5.50 0.00 0.00 2.57
2486 2550 5.393962 CCAAAGAAGTTCAATCACGGAATC 58.606 41.667 5.50 0.00 0.00 2.52
2487 2551 4.321230 GCCAAAGAAGTTCAATCACGGAAT 60.321 41.667 5.50 0.00 0.00 3.01
2488 2552 3.004315 GCCAAAGAAGTTCAATCACGGAA 59.996 43.478 5.50 0.00 0.00 4.30
2489 2553 2.552315 GCCAAAGAAGTTCAATCACGGA 59.448 45.455 5.50 0.00 0.00 4.69
2490 2554 2.665519 CGCCAAAGAAGTTCAATCACGG 60.666 50.000 5.50 0.00 0.00 4.94
2491 2555 2.223144 TCGCCAAAGAAGTTCAATCACG 59.777 45.455 5.50 3.67 0.00 4.35
2612 2676 2.571212 TGACGCAAACACTCTGGAATT 58.429 42.857 0.00 0.00 0.00 2.17
2752 2816 3.802866 TGTCACTTCAGTGTTGCATGTA 58.197 40.909 6.84 0.00 45.76 2.29
2882 3029 5.845985 TGTGCTCTTGAACTAATTTCTCG 57.154 39.130 0.00 0.00 34.97 4.04
2978 3125 4.903045 TGGGAAGGAATACGAGAAAACT 57.097 40.909 0.00 0.00 0.00 2.66
3035 3182 6.931840 GGATGGACAAGATTCTTACCTCATAC 59.068 42.308 17.07 9.12 0.00 2.39
3091 3243 7.280428 TCGGTAAAACACAACTCAAAACTCATA 59.720 33.333 0.00 0.00 0.00 2.15
3092 3244 6.094325 TCGGTAAAACACAACTCAAAACTCAT 59.906 34.615 0.00 0.00 0.00 2.90
3144 3298 7.367159 TGATGTAAAACTTGTAACCATACCG 57.633 36.000 0.00 0.00 0.00 4.02
3151 3305 9.543018 GAGTAATGCTGATGTAAAACTTGTAAC 57.457 33.333 0.00 0.00 0.00 2.50
3344 3498 6.838612 CCCCAAAAGAACTCCCATATTGATAA 59.161 38.462 0.00 0.00 0.00 1.75
3354 3508 1.344438 CAAAGCCCCAAAAGAACTCCC 59.656 52.381 0.00 0.00 0.00 4.30
3369 3523 2.952310 AGTCACTGAAAGGAACCAAAGC 59.048 45.455 0.00 0.00 39.30 3.51
3509 3774 9.520204 GTTTGCAACATATAAATACTCTGCAAT 57.480 29.630 0.00 0.00 45.06 3.56
3519 3784 9.709495 ACATTCAACTGTTTGCAACATATAAAT 57.291 25.926 0.00 0.00 41.26 1.40
3540 3805 5.880054 ACAACCATGTGTTAGCTACATTC 57.120 39.130 0.00 0.00 39.39 2.67
3576 3841 7.934855 TCTCACGTCTTACTAGGAAACTATT 57.065 36.000 0.00 0.00 43.39 1.73
3577 3842 8.522542 AATCTCACGTCTTACTAGGAAACTAT 57.477 34.615 0.00 0.00 43.39 2.12
3586 3851 5.407387 GGCAACAAAATCTCACGTCTTACTA 59.593 40.000 0.00 0.00 0.00 1.82
3587 3852 4.213482 GGCAACAAAATCTCACGTCTTACT 59.787 41.667 0.00 0.00 0.00 2.24
3588 3853 4.464112 GGCAACAAAATCTCACGTCTTAC 58.536 43.478 0.00 0.00 0.00 2.34
3589 3854 4.742438 GGCAACAAAATCTCACGTCTTA 57.258 40.909 0.00 0.00 0.00 2.10
3590 3855 3.626028 GGCAACAAAATCTCACGTCTT 57.374 42.857 0.00 0.00 0.00 3.01
3635 3903 9.796062 GCGCATTCATGTAAAAATAATAATTGG 57.204 29.630 0.30 0.00 0.00 3.16
3639 3907 8.976471 CCATGCGCATTCATGTAAAAATAATAA 58.024 29.630 22.81 0.00 41.60 1.40
3640 3908 8.140628 ACCATGCGCATTCATGTAAAAATAATA 58.859 29.630 22.81 0.00 41.60 0.98
3641 3909 6.985645 ACCATGCGCATTCATGTAAAAATAAT 59.014 30.769 22.81 0.00 41.60 1.28
3642 3910 6.336566 ACCATGCGCATTCATGTAAAAATAA 58.663 32.000 22.81 0.00 41.60 1.40
3643 3911 5.900425 ACCATGCGCATTCATGTAAAAATA 58.100 33.333 22.81 0.00 41.60 1.40
3644 3912 4.757594 ACCATGCGCATTCATGTAAAAAT 58.242 34.783 22.81 0.00 41.60 1.82
3645 3913 4.185467 ACCATGCGCATTCATGTAAAAA 57.815 36.364 22.81 0.00 41.60 1.94
3646 3914 3.865011 ACCATGCGCATTCATGTAAAA 57.135 38.095 22.81 0.00 41.60 1.52
3647 3915 3.865011 AACCATGCGCATTCATGTAAA 57.135 38.095 22.81 0.00 41.60 2.01
3648 3916 3.865011 AAACCATGCGCATTCATGTAA 57.135 38.095 22.81 0.00 41.60 2.41
3649 3917 3.865011 AAAACCATGCGCATTCATGTA 57.135 38.095 22.81 0.00 41.60 2.29
3650 3918 2.747396 AAAACCATGCGCATTCATGT 57.253 40.000 22.81 12.75 41.60 3.21
3716 3984 7.413438 GCAAGTAAATCAGATACAGTCAGTTGG 60.413 40.741 0.00 0.00 0.00 3.77
4123 4391 0.396060 TGTGTGATACAGCAGCCACA 59.604 50.000 0.00 0.00 37.21 4.17
4138 4406 6.195700 ACATACTACTCCTTCTACCATGTGT 58.804 40.000 0.00 0.00 0.00 3.72
4141 4409 7.492669 CACAAACATACTACTCCTTCTACCATG 59.507 40.741 0.00 0.00 0.00 3.66
4149 4417 4.267349 ACGCACAAACATACTACTCCTT 57.733 40.909 0.00 0.00 0.00 3.36
4152 4420 4.084013 AGCAAACGCACAAACATACTACTC 60.084 41.667 0.00 0.00 0.00 2.59
4154 4422 4.141855 AGCAAACGCACAAACATACTAC 57.858 40.909 0.00 0.00 0.00 2.73
4157 4425 5.150683 TCATAAGCAAACGCACAAACATAC 58.849 37.500 0.00 0.00 0.00 2.39
4158 4426 5.363979 TCATAAGCAAACGCACAAACATA 57.636 34.783 0.00 0.00 0.00 2.29
4159 4427 4.235939 TCATAAGCAAACGCACAAACAT 57.764 36.364 0.00 0.00 0.00 2.71
4160 4428 3.699779 TCATAAGCAAACGCACAAACA 57.300 38.095 0.00 0.00 0.00 2.83
4176 4444 7.609146 ACTGCAAATTTCAAGTCTCTGATCATA 59.391 33.333 0.00 0.00 0.00 2.15
4240 4508 5.031066 ACTACTGTTCACCTGCAAGTAAA 57.969 39.130 0.00 0.00 0.00 2.01
4388 4656 9.743057 TGTTACTTTTTACCAACATTTGAGATG 57.257 29.630 0.00 0.00 0.00 2.90
4422 4690 5.385617 CGGTTGATTTGTTTTTGCAAAACA 58.614 33.333 23.79 20.07 41.03 2.83
4441 4709 0.589708 GCGTAAAGAACAAGGCGGTT 59.410 50.000 0.00 0.00 0.00 4.44
4442 4710 1.562575 CGCGTAAAGAACAAGGCGGT 61.563 55.000 0.00 0.00 43.91 5.68
4443 4711 1.131826 CGCGTAAAGAACAAGGCGG 59.868 57.895 0.00 0.00 43.91 6.13
4444 4712 4.717917 CGCGTAAAGAACAAGGCG 57.282 55.556 0.00 0.00 42.51 5.52
4453 4721 3.357021 TCGCTCTATACAACGCGTAAAG 58.643 45.455 14.46 8.62 45.25 1.85
4458 4726 2.032414 TGATCGCTCTATACAACGCG 57.968 50.000 3.53 3.53 46.28 6.01
4482 4750 2.411935 GGTAAAACAAAGCGGCGAGTAC 60.412 50.000 12.98 0.00 0.00 2.73
4483 4751 1.799994 GGTAAAACAAAGCGGCGAGTA 59.200 47.619 12.98 0.00 0.00 2.59
4484 4752 0.589708 GGTAAAACAAAGCGGCGAGT 59.410 50.000 12.98 0.00 0.00 4.18
4485 4753 0.872388 AGGTAAAACAAAGCGGCGAG 59.128 50.000 12.98 0.00 0.00 5.03
4489 4757 6.500910 ACTTAGAAAAGGTAAAACAAAGCGG 58.499 36.000 0.00 0.00 37.01 5.52
4503 4771 5.757850 AACCACAGCTCAACTTAGAAAAG 57.242 39.130 0.00 0.00 38.77 2.27
4523 4793 2.227865 TGAGCCTTTGCGGTTATGAAAC 59.772 45.455 0.00 0.00 44.33 2.78
4533 4803 1.200716 ACAACATCATGAGCCTTTGCG 59.799 47.619 0.09 0.00 44.33 4.85
4593 4863 8.252417 TCATTGTTGAAATATTGTCCCATCTTG 58.748 33.333 0.00 0.00 0.00 3.02
4666 4936 2.437716 ATTGGCGGGTACAAGCGG 60.438 61.111 0.00 0.00 34.49 5.52
4760 5327 2.759560 GCCATGGGCGGGTTGATT 60.760 61.111 15.13 0.00 39.62 2.57
4809 5429 3.376546 GGGCAATAGCAAAGTCAAGAGAG 59.623 47.826 0.00 0.00 44.61 3.20
4810 5430 3.009473 AGGGCAATAGCAAAGTCAAGAGA 59.991 43.478 0.00 0.00 44.61 3.10
4811 5431 3.128242 CAGGGCAATAGCAAAGTCAAGAG 59.872 47.826 0.00 0.00 44.61 2.85
4812 5432 3.084039 CAGGGCAATAGCAAAGTCAAGA 58.916 45.455 0.00 0.00 44.61 3.02
4813 5433 3.084039 TCAGGGCAATAGCAAAGTCAAG 58.916 45.455 0.00 0.00 44.61 3.02
4814 5434 3.153369 TCAGGGCAATAGCAAAGTCAA 57.847 42.857 0.00 0.00 44.61 3.18
4816 5436 2.360165 CCATCAGGGCAATAGCAAAGTC 59.640 50.000 0.00 0.00 44.61 3.01
4817 5437 2.381911 CCATCAGGGCAATAGCAAAGT 58.618 47.619 0.00 0.00 44.61 2.66
4829 5449 1.439353 CCATCGAAACGCCATCAGGG 61.439 60.000 0.00 0.00 40.85 4.45
4832 5452 1.024046 CCACCATCGAAACGCCATCA 61.024 55.000 0.00 0.00 0.00 3.07
4833 5453 1.024579 ACCACCATCGAAACGCCATC 61.025 55.000 0.00 0.00 0.00 3.51
4837 5457 0.096976 CATCACCACCATCGAAACGC 59.903 55.000 0.00 0.00 0.00 4.84
4838 5458 1.660607 CTCATCACCACCATCGAAACG 59.339 52.381 0.00 0.00 0.00 3.60
4839 5459 2.009774 CCTCATCACCACCATCGAAAC 58.990 52.381 0.00 0.00 0.00 2.78
4840 5460 1.628340 ACCTCATCACCACCATCGAAA 59.372 47.619 0.00 0.00 0.00 3.46
4841 5461 1.275666 ACCTCATCACCACCATCGAA 58.724 50.000 0.00 0.00 0.00 3.71
4843 5463 2.979814 TAACCTCATCACCACCATCG 57.020 50.000 0.00 0.00 0.00 3.84
4844 5464 4.130118 GACATAACCTCATCACCACCATC 58.870 47.826 0.00 0.00 0.00 3.51
4845 5465 3.523157 TGACATAACCTCATCACCACCAT 59.477 43.478 0.00 0.00 0.00 3.55
4847 5467 3.627395 TGACATAACCTCATCACCACC 57.373 47.619 0.00 0.00 0.00 4.61
4848 5468 5.028549 AGATGACATAACCTCATCACCAC 57.971 43.478 10.27 0.00 44.51 4.16
4849 5469 8.670521 ATATAGATGACATAACCTCATCACCA 57.329 34.615 10.27 0.00 44.51 4.17
4850 5470 9.950496 AAATATAGATGACATAACCTCATCACC 57.050 33.333 10.27 0.00 44.51 4.02
4854 5474 9.658799 CCGAAAATATAGATGACATAACCTCAT 57.341 33.333 0.00 0.00 0.00 2.90
4857 5477 7.813148 CGTCCGAAAATATAGATGACATAACCT 59.187 37.037 0.00 0.00 0.00 3.50
4859 5479 7.811236 TCCGTCCGAAAATATAGATGACATAAC 59.189 37.037 0.00 0.00 0.00 1.89
4861 5481 7.362660 CCTCCGTCCGAAAATATAGATGACATA 60.363 40.741 0.00 0.00 0.00 2.29
4862 5482 6.340962 TCCGTCCGAAAATATAGATGACAT 57.659 37.500 0.00 0.00 0.00 3.06
4866 5486 4.219944 TCCCTCCGTCCGAAAATATAGATG 59.780 45.833 0.00 0.00 0.00 2.90
4868 5488 3.825014 CTCCCTCCGTCCGAAAATATAGA 59.175 47.826 0.00 0.00 0.00 1.98
4869 5489 3.056749 CCTCCCTCCGTCCGAAAATATAG 60.057 52.174 0.00 0.00 0.00 1.31
4871 5491 1.692519 CCTCCCTCCGTCCGAAAATAT 59.307 52.381 0.00 0.00 0.00 1.28
4872 5492 1.117150 CCTCCCTCCGTCCGAAAATA 58.883 55.000 0.00 0.00 0.00 1.40
4873 5493 0.616679 TCCTCCCTCCGTCCGAAAAT 60.617 55.000 0.00 0.00 0.00 1.82
4875 5495 0.259647 TATCCTCCCTCCGTCCGAAA 59.740 55.000 0.00 0.00 0.00 3.46
4876 5496 0.259647 TTATCCTCCCTCCGTCCGAA 59.740 55.000 0.00 0.00 0.00 4.30
4877 5497 0.178998 CTTATCCTCCCTCCGTCCGA 60.179 60.000 0.00 0.00 0.00 4.55
4878 5498 0.467659 ACTTATCCTCCCTCCGTCCG 60.468 60.000 0.00 0.00 0.00 4.79
4879 5499 1.133419 AGACTTATCCTCCCTCCGTCC 60.133 57.143 0.00 0.00 0.00 4.79
4882 5502 4.489306 AAAAAGACTTATCCTCCCTCCG 57.511 45.455 0.00 0.00 0.00 4.63
4883 5503 6.156429 TGTCTAAAAAGACTTATCCTCCCTCC 59.844 42.308 7.04 0.00 39.41 4.30
4884 5504 7.184067 TGTCTAAAAAGACTTATCCTCCCTC 57.816 40.000 7.04 0.00 39.41 4.30
4886 5506 8.809468 AAATGTCTAAAAAGACTTATCCTCCC 57.191 34.615 7.04 0.00 39.41 4.30
4887 5507 9.449719 TGAAATGTCTAAAAAGACTTATCCTCC 57.550 33.333 7.04 0.00 39.41 4.30
4895 5515 8.912988 TGTCCATTTGAAATGTCTAAAAAGACT 58.087 29.630 15.93 0.00 39.41 3.24
4896 5516 9.528018 TTGTCCATTTGAAATGTCTAAAAAGAC 57.472 29.630 15.93 12.86 39.15 3.01
4897 5517 9.528018 GTTGTCCATTTGAAATGTCTAAAAAGA 57.472 29.630 15.93 1.84 0.00 2.52
4899 5519 9.658799 TTGTTGTCCATTTGAAATGTCTAAAAA 57.341 25.926 15.93 6.88 0.00 1.94
4900 5520 9.092876 GTTGTTGTCCATTTGAAATGTCTAAAA 57.907 29.630 15.93 5.56 0.00 1.52
4901 5521 8.253810 TGTTGTTGTCCATTTGAAATGTCTAAA 58.746 29.630 15.93 3.49 0.00 1.85
4902 5522 7.776107 TGTTGTTGTCCATTTGAAATGTCTAA 58.224 30.769 15.93 5.71 0.00 2.10
4904 5524 6.219417 TGTTGTTGTCCATTTGAAATGTCT 57.781 33.333 15.93 0.00 0.00 3.41
4905 5525 7.148983 CGTATGTTGTTGTCCATTTGAAATGTC 60.149 37.037 15.93 9.53 0.00 3.06
4907 5527 6.089283 CCGTATGTTGTTGTCCATTTGAAATG 59.911 38.462 10.84 10.84 0.00 2.32
4908 5528 6.015856 TCCGTATGTTGTTGTCCATTTGAAAT 60.016 34.615 0.00 0.00 0.00 2.17
4909 5529 5.299531 TCCGTATGTTGTTGTCCATTTGAAA 59.700 36.000 0.00 0.00 0.00 2.69
4912 5532 4.757799 TCCGTATGTTGTTGTCCATTTG 57.242 40.909 0.00 0.00 0.00 2.32
4914 5534 4.331968 ACATCCGTATGTTGTTGTCCATT 58.668 39.130 0.00 0.00 44.07 3.16
4916 5536 3.410631 ACATCCGTATGTTGTTGTCCA 57.589 42.857 0.00 0.00 44.07 4.02
4917 5537 5.403897 CATACATCCGTATGTTGTTGTCC 57.596 43.478 0.00 0.00 46.70 4.02
4952 5572 8.734386 GGAACAAAATGAGTGAATCTACATTCT 58.266 33.333 0.00 0.00 39.49 2.40
4953 5573 7.693951 CGGAACAAAATGAGTGAATCTACATTC 59.306 37.037 0.00 0.00 39.24 2.67
4954 5574 7.530010 CGGAACAAAATGAGTGAATCTACATT 58.470 34.615 0.00 0.00 34.99 2.71
4956 5576 5.106712 GCGGAACAAAATGAGTGAATCTACA 60.107 40.000 0.00 0.00 0.00 2.74
4957 5577 5.106712 TGCGGAACAAAATGAGTGAATCTAC 60.107 40.000 0.00 0.00 0.00 2.59
4958 5578 5.000591 TGCGGAACAAAATGAGTGAATCTA 58.999 37.500 0.00 0.00 0.00 1.98
4959 5579 3.820467 TGCGGAACAAAATGAGTGAATCT 59.180 39.130 0.00 0.00 0.00 2.40
4960 5580 4.159377 TGCGGAACAAAATGAGTGAATC 57.841 40.909 0.00 0.00 0.00 2.52
4962 5582 3.317711 ACATGCGGAACAAAATGAGTGAA 59.682 39.130 0.00 0.00 0.00 3.18
4963 5583 2.884012 ACATGCGGAACAAAATGAGTGA 59.116 40.909 0.00 0.00 0.00 3.41
4964 5584 3.287312 ACATGCGGAACAAAATGAGTG 57.713 42.857 0.00 0.00 0.00 3.51
4965 5585 4.072131 ACTACATGCGGAACAAAATGAGT 58.928 39.130 0.00 0.00 0.00 3.41
4967 5587 4.068599 TGACTACATGCGGAACAAAATGA 58.931 39.130 0.00 0.00 0.00 2.57
4968 5588 4.083324 AGTGACTACATGCGGAACAAAATG 60.083 41.667 0.00 0.00 0.00 2.32
4969 5589 4.072131 AGTGACTACATGCGGAACAAAAT 58.928 39.130 0.00 0.00 0.00 1.82
4970 5590 3.472652 AGTGACTACATGCGGAACAAAA 58.527 40.909 0.00 0.00 0.00 2.44
4971 5591 3.120321 AGTGACTACATGCGGAACAAA 57.880 42.857 0.00 0.00 0.00 2.83
4972 5592 2.805671 CAAGTGACTACATGCGGAACAA 59.194 45.455 0.00 0.00 0.00 2.83
4973 5593 2.224185 ACAAGTGACTACATGCGGAACA 60.224 45.455 0.00 0.00 0.00 3.18
4974 5594 2.413837 ACAAGTGACTACATGCGGAAC 58.586 47.619 0.00 0.00 0.00 3.62
4975 5595 2.805671 CAACAAGTGACTACATGCGGAA 59.194 45.455 0.00 0.00 0.00 4.30
4976 5596 2.412870 CAACAAGTGACTACATGCGGA 58.587 47.619 0.00 0.00 0.00 5.54
4977 5597 1.464608 CCAACAAGTGACTACATGCGG 59.535 52.381 0.00 0.00 0.00 5.69
4978 5598 2.412870 TCCAACAAGTGACTACATGCG 58.587 47.619 0.00 0.00 0.00 4.73
4979 5599 4.275936 AGTTTCCAACAAGTGACTACATGC 59.724 41.667 0.00 0.00 0.00 4.06
4980 5600 5.760253 AGAGTTTCCAACAAGTGACTACATG 59.240 40.000 0.00 0.00 0.00 3.21
4981 5601 5.930135 AGAGTTTCCAACAAGTGACTACAT 58.070 37.500 0.00 0.00 0.00 2.29
4982 5602 5.353394 AGAGTTTCCAACAAGTGACTACA 57.647 39.130 0.00 0.00 0.00 2.74
4983 5603 7.781548 TTTAGAGTTTCCAACAAGTGACTAC 57.218 36.000 0.00 0.00 0.00 2.73
4985 5605 7.610305 TCTTTTTAGAGTTTCCAACAAGTGACT 59.390 33.333 0.00 0.00 0.00 3.41
4986 5606 7.696872 GTCTTTTTAGAGTTTCCAACAAGTGAC 59.303 37.037 0.00 0.00 0.00 3.67
4987 5607 7.610305 AGTCTTTTTAGAGTTTCCAACAAGTGA 59.390 33.333 0.00 0.00 0.00 3.41
4989 5609 7.939784 AGTCTTTTTAGAGTTTCCAACAAGT 57.060 32.000 0.00 0.00 0.00 3.16
5007 5627 8.343787 TCCCTTCATTCCCAAATATAAGTCTTT 58.656 33.333 0.00 0.00 0.00 2.52
5008 5628 7.882755 TCCCTTCATTCCCAAATATAAGTCTT 58.117 34.615 0.00 0.00 0.00 3.01
5009 5629 7.129504 ACTCCCTTCATTCCCAAATATAAGTCT 59.870 37.037 0.00 0.00 0.00 3.24
5010 5630 7.290813 ACTCCCTTCATTCCCAAATATAAGTC 58.709 38.462 0.00 0.00 0.00 3.01
5011 5631 7.226059 ACTCCCTTCATTCCCAAATATAAGT 57.774 36.000 0.00 0.00 0.00 2.24
5012 5632 9.813826 AATACTCCCTTCATTCCCAAATATAAG 57.186 33.333 0.00 0.00 0.00 1.73
5015 5635 8.732854 TGTAATACTCCCTTCATTCCCAAATAT 58.267 33.333 0.00 0.00 0.00 1.28
5017 5637 6.980577 TGTAATACTCCCTTCATTCCCAAAT 58.019 36.000 0.00 0.00 0.00 2.32
5019 5639 6.395780 TTGTAATACTCCCTTCATTCCCAA 57.604 37.500 0.00 0.00 0.00 4.12
5025 5645 9.975218 AGTTACAAATTGTAATACTCCCTTCAT 57.025 29.630 19.82 0.00 43.74 2.57
5134 5884 3.610911 CGAGGGGAAGTTGAAATAGCTT 58.389 45.455 0.00 0.00 31.99 3.74
5327 6081 9.414295 TGCAGCATAAATAAGATGAATAATTGC 57.586 29.630 0.00 0.00 0.00 3.56
5349 6103 6.798959 GCAAGTTTAGAGACAAAACTATGCAG 59.201 38.462 19.26 0.00 44.35 4.41
5441 6195 5.801350 ATCCGCCAACGATCATAATAATG 57.199 39.130 0.00 0.00 43.93 1.90
5526 6385 6.151480 TGTCAACAACACCAGATACGATAGTA 59.849 38.462 0.00 0.00 44.55 1.82
5528 6387 5.407502 TGTCAACAACACCAGATACGATAG 58.592 41.667 0.00 0.00 35.60 2.08
5532 6391 4.450757 TCATTGTCAACAACACCAGATACG 59.549 41.667 0.00 0.00 37.70 3.06
5599 6458 7.792374 TGAGACATGAAAGCTAATTGTATCC 57.208 36.000 0.00 0.00 29.75 2.59
5604 6463 6.373774 AGACCTTGAGACATGAAAGCTAATTG 59.626 38.462 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.