Multiple sequence alignment - TraesCS4B01G029800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G029800 chr4B 100.000 1955 0 0 546 2500 22253848 22255802 0.000000e+00 3611.0
1 TraesCS4B01G029800 chr4B 88.559 708 63 9 855 1555 22176958 22177654 0.000000e+00 843.0
2 TraesCS4B01G029800 chr4B 96.512 258 9 0 574 831 439452996 439453253 6.390000e-116 427.0
3 TraesCS4B01G029800 chr4B 100.000 201 0 0 1 201 22253303 22253503 3.040000e-99 372.0
4 TraesCS4B01G029800 chr4B 77.686 363 51 18 1866 2210 23653415 23653765 7.060000e-46 195.0
5 TraesCS4B01G029800 chr4B 94.203 69 4 0 2254 2322 13855622 13855554 3.400000e-19 106.0
6 TraesCS4B01G029800 chr4D 95.108 695 30 2 862 1553 12139050 12138357 0.000000e+00 1092.0
7 TraesCS4B01G029800 chr4D 91.346 624 23 15 1639 2240 12137463 12136849 0.000000e+00 824.0
8 TraesCS4B01G029800 chr4D 87.152 467 60 0 1077 1543 12988868 12989334 4.730000e-147 531.0
9 TraesCS4B01G029800 chr4D 92.973 185 9 3 647 828 27695253 27695070 1.470000e-67 267.0
10 TraesCS4B01G029800 chr4D 76.550 516 58 32 1742 2210 12991726 12992225 9.000000e-55 224.0
11 TraesCS4B01G029800 chr4D 75.330 531 65 38 1729 2210 13037613 13038126 7.060000e-46 195.0
12 TraesCS4B01G029800 chr4D 85.455 110 15 1 2267 2376 370683944 370684052 2.030000e-21 113.0
13 TraesCS4B01G029800 chr1B 96.928 293 8 1 546 838 100817858 100817567 8.040000e-135 490.0
14 TraesCS4B01G029800 chr1B 93.993 283 11 4 546 825 270272234 270272513 8.270000e-115 424.0
15 TraesCS4B01G029800 chr1B 96.667 210 6 1 546 755 413066020 413066228 5.120000e-92 348.0
16 TraesCS4B01G029800 chr1B 95.522 201 7 2 1 201 100818233 100818035 1.120000e-83 320.0
17 TraesCS4B01G029800 chr1B 93.035 201 14 0 1 201 413065643 413065843 6.760000e-76 294.0
18 TraesCS4B01G029800 chr5B 96.154 286 11 0 546 831 357783791 357784076 3.770000e-128 468.0
19 TraesCS4B01G029800 chr5B 96.838 253 8 0 579 831 640811505 640811757 8.270000e-115 424.0
20 TraesCS4B01G029800 chr5B 96.482 199 7 0 1 199 640811112 640811310 1.850000e-86 329.0
21 TraesCS4B01G029800 chr5B 95.522 201 9 0 1 201 357783414 357783614 3.100000e-84 322.0
22 TraesCS4B01G029800 chr3B 96.169 261 9 1 564 823 124951288 124951548 2.300000e-115 425.0
23 TraesCS4B01G029800 chr3B 94.318 264 12 3 546 806 729056955 729057218 3.870000e-108 401.0
24 TraesCS4B01G029800 chr3B 97.487 199 5 0 1 199 124950556 124950754 8.560000e-90 340.0
25 TraesCS4B01G029800 chr3B 93.532 201 13 0 1 201 729056571 729056771 1.450000e-77 300.0
26 TraesCS4B01G029800 chr3B 92.982 114 8 0 749 862 357112719 357112606 1.540000e-37 167.0
27 TraesCS4B01G029800 chr2B 97.748 222 5 0 610 831 685695890 685695669 1.400000e-102 383.0
28 TraesCS4B01G029800 chr7B 96.517 201 7 0 1 201 154878704 154878504 1.430000e-87 333.0
29 TraesCS4B01G029800 chr7B 82.979 141 23 1 2259 2399 49105359 49105220 2.610000e-25 126.0
30 TraesCS4B01G029800 chr7B 80.000 140 27 1 2259 2398 497734404 497734542 4.400000e-18 102.0
31 TraesCS4B01G029800 chr5A 91.457 199 17 0 3 201 15554765 15554963 8.810000e-70 274.0
32 TraesCS4B01G029800 chr5A 100.000 28 0 0 1189 1216 615863420 615863447 4.000000e-03 52.8
33 TraesCS4B01G029800 chr5D 89.447 199 21 0 3 201 69576300 69576498 4.130000e-63 252.0
34 TraesCS4B01G029800 chr2D 77.255 255 51 7 2248 2499 515816242 515815992 2.590000e-30 143.0
35 TraesCS4B01G029800 chr1D 77.917 240 43 8 2259 2493 63602696 63602930 9.320000e-30 141.0
36 TraesCS4B01G029800 chr4A 87.611 113 13 1 2259 2371 288108374 288108263 2.020000e-26 130.0
37 TraesCS4B01G029800 chr4A 88.462 104 12 0 1742 1845 589490790 589490893 2.610000e-25 126.0
38 TraesCS4B01G029800 chr7D 75.833 240 44 12 2259 2493 535726047 535725817 2.630000e-20 110.0
39 TraesCS4B01G029800 chr1A 85.106 94 11 2 2259 2352 151513676 151513766 2.650000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G029800 chr4B 22253303 22255802 2499 False 1991.5 3611 100.000 1 2500 2 chr4B.!!$F4 2499
1 TraesCS4B01G029800 chr4B 22176958 22177654 696 False 843.0 843 88.559 855 1555 1 chr4B.!!$F1 700
2 TraesCS4B01G029800 chr4D 12136849 12139050 2201 True 958.0 1092 93.227 862 2240 2 chr4D.!!$R2 1378
3 TraesCS4B01G029800 chr4D 12988868 12992225 3357 False 377.5 531 81.851 1077 2210 2 chr4D.!!$F3 1133
4 TraesCS4B01G029800 chr1B 100817567 100818233 666 True 405.0 490 96.225 1 838 2 chr1B.!!$R1 837
5 TraesCS4B01G029800 chr1B 413065643 413066228 585 False 321.0 348 94.851 1 755 2 chr1B.!!$F2 754
6 TraesCS4B01G029800 chr5B 357783414 357784076 662 False 395.0 468 95.838 1 831 2 chr5B.!!$F1 830
7 TraesCS4B01G029800 chr5B 640811112 640811757 645 False 376.5 424 96.660 1 831 2 chr5B.!!$F2 830
8 TraesCS4B01G029800 chr3B 124950556 124951548 992 False 382.5 425 96.828 1 823 2 chr3B.!!$F1 822
9 TraesCS4B01G029800 chr3B 729056571 729057218 647 False 350.5 401 93.925 1 806 2 chr3B.!!$F2 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 1098 0.031994 GACCGGTGTTTTGCATTGCT 59.968 50.0 14.63 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 4730 0.03101 CAGGCCTAAGACCCTACCCT 60.031 60.0 3.98 0.0 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
747 920 2.740826 CGGTTAGGGTGGTGTGCG 60.741 66.667 0.00 0.00 0.00 5.34
806 981 5.309806 GGGGTGTTATCATAATAGACCCACT 59.690 44.000 17.85 0.00 40.51 4.00
807 982 6.183361 GGGGTGTTATCATAATAGACCCACTT 60.183 42.308 17.85 0.00 40.51 3.16
847 1022 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
848 1023 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
849 1024 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
850 1025 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
851 1026 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
852 1027 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
853 1028 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
854 1029 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
855 1030 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
856 1031 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
857 1032 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
858 1033 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
859 1034 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
860 1035 2.093625 GTGTGTGTGTGTGTGTGTGTAG 59.906 50.000 0.00 0.00 0.00 2.74
907 1085 0.958822 GCAAATCAAGTTGGACCGGT 59.041 50.000 6.92 6.92 0.00 5.28
920 1098 0.031994 GACCGGTGTTTTGCATTGCT 59.968 50.000 14.63 0.00 0.00 3.91
925 1103 2.543445 CGGTGTTTTGCATTGCTTCTCA 60.543 45.455 10.49 2.10 0.00 3.27
934 1112 3.380954 TGCATTGCTTCTCAAAACTCACA 59.619 39.130 10.49 0.00 38.34 3.58
936 1116 4.805192 GCATTGCTTCTCAAAACTCACAAA 59.195 37.500 0.16 0.00 38.34 2.83
966 1146 2.433491 CCGTGGTCGATTTCGCCA 60.433 61.111 10.62 10.62 40.97 5.69
967 1147 2.452813 CCGTGGTCGATTTCGCCAG 61.453 63.158 13.75 9.46 42.72 4.85
996 1176 5.712217 TCACTTCGGCGATAATTAACAAG 57.288 39.130 11.76 3.91 0.00 3.16
1006 1186 6.580041 GGCGATAATTAACAAGAAGATGCATG 59.420 38.462 2.46 0.00 0.00 4.06
1009 1189 3.763097 TTAACAAGAAGATGCATGCCG 57.237 42.857 16.68 0.00 0.00 5.69
1013 1193 0.754217 AAGAAGATGCATGCCGCCAT 60.754 50.000 16.68 0.71 41.33 4.40
1025 1205 4.161295 CGCCATCTTCCCCGCTGA 62.161 66.667 0.00 0.00 0.00 4.26
1029 1209 1.098050 CCATCTTCCCCGCTGAAAAG 58.902 55.000 0.00 0.00 0.00 2.27
1112 1292 2.029844 GCTCCGGCGCATATTCCTC 61.030 63.158 12.53 0.00 0.00 3.71
1171 1351 4.287781 TCGCGTCGGGCTTGTTGA 62.288 61.111 5.77 0.00 40.44 3.18
1267 1447 3.370231 GCCGCGGGGTTGTTGATT 61.370 61.111 29.38 0.00 34.97 2.57
1343 1523 2.284625 ACATCCGGAGCTGGGTGA 60.285 61.111 15.31 0.00 43.16 4.02
1374 1554 4.158025 CGCTTCTTTAACCTAGACTCAGGA 59.842 45.833 0.00 0.00 39.18 3.86
1388 1568 3.626924 AGGAGCCTTTGTCCGCGT 61.627 61.111 4.92 0.00 39.30 6.01
1389 1569 3.119096 GGAGCCTTTGTCCGCGTC 61.119 66.667 4.92 0.00 0.00 5.19
1468 1650 1.599047 CAGAGGGACAAGGACGCAT 59.401 57.895 0.00 0.00 0.00 4.73
1493 1675 3.170717 TCCGTCTTCTACACCCTTTCAT 58.829 45.455 0.00 0.00 0.00 2.57
1553 1735 1.910772 CACAAATGCCCGGGGGAAA 60.911 57.895 25.28 0.00 37.50 3.13
1573 2226 5.302823 GGAAAATCATGGGACCAAGGAATAG 59.697 44.000 0.00 0.00 0.00 1.73
1575 2228 6.590656 AAATCATGGGACCAAGGAATAGTA 57.409 37.500 0.00 0.00 0.00 1.82
1576 2229 6.786843 AATCATGGGACCAAGGAATAGTAT 57.213 37.500 0.00 0.00 0.00 2.12
1580 2233 3.117663 TGGGACCAAGGAATAGTATTGGC 60.118 47.826 0.00 1.38 46.05 4.52
1581 2234 3.487372 GGACCAAGGAATAGTATTGGCC 58.513 50.000 0.00 0.00 46.05 5.36
1582 2235 3.117663 GGACCAAGGAATAGTATTGGCCA 60.118 47.826 0.00 0.00 46.05 5.36
1583 2236 3.883489 GACCAAGGAATAGTATTGGCCAC 59.117 47.826 3.88 0.00 46.05 5.01
1584 2237 3.268334 ACCAAGGAATAGTATTGGCCACA 59.732 43.478 3.88 0.00 46.05 4.17
1586 2239 3.194005 AGGAATAGTATTGGCCACACG 57.806 47.619 3.88 0.00 0.00 4.49
1587 2240 1.602377 GGAATAGTATTGGCCACACGC 59.398 52.381 3.88 0.00 0.00 5.34
1589 2242 2.638480 ATAGTATTGGCCACACGCAT 57.362 45.000 3.88 0.00 40.31 4.73
1590 2243 1.948104 TAGTATTGGCCACACGCATC 58.052 50.000 3.88 0.00 40.31 3.91
1594 2247 1.386525 ATTGGCCACACGCATCCATC 61.387 55.000 3.88 0.00 40.31 3.51
1595 2248 3.211963 GGCCACACGCATCCATCC 61.212 66.667 0.00 0.00 40.31 3.51
1596 2249 3.576356 GCCACACGCATCCATCCG 61.576 66.667 0.00 0.00 37.47 4.18
1597 2250 2.125147 CCACACGCATCCATCCGT 60.125 61.111 0.00 0.00 38.35 4.69
1598 2251 2.173669 CCACACGCATCCATCCGTC 61.174 63.158 0.00 0.00 35.17 4.79
1599 2252 1.153568 CACACGCATCCATCCGTCT 60.154 57.895 0.00 0.00 35.17 4.18
1600 2253 0.740868 CACACGCATCCATCCGTCTT 60.741 55.000 0.00 0.00 35.17 3.01
1602 2255 0.179100 CACGCATCCATCCGTCTTCT 60.179 55.000 0.00 0.00 35.17 2.85
1603 2256 1.067060 CACGCATCCATCCGTCTTCTA 59.933 52.381 0.00 0.00 35.17 2.10
1606 2259 2.474816 GCATCCATCCGTCTTCTACAC 58.525 52.381 0.00 0.00 0.00 2.90
1607 2260 2.803492 GCATCCATCCGTCTTCTACACC 60.803 54.545 0.00 0.00 0.00 4.16
1608 2261 1.481871 TCCATCCGTCTTCTACACCC 58.518 55.000 0.00 0.00 0.00 4.61
1609 2262 1.006758 TCCATCCGTCTTCTACACCCT 59.993 52.381 0.00 0.00 0.00 4.34
1630 2646 9.892130 CACCCTCAATCTTACTTATTCTACTTT 57.108 33.333 0.00 0.00 0.00 2.66
1949 4382 3.490348 AGCTGGTATCACCCAATTATGC 58.510 45.455 0.00 0.00 37.50 3.14
2040 4473 7.176589 AGCTAGCAATGGAGGACTTATATAC 57.823 40.000 18.83 0.00 0.00 1.47
2042 4475 8.116669 AGCTAGCAATGGAGGACTTATATACTA 58.883 37.037 18.83 0.00 0.00 1.82
2228 4682 5.343307 AATTCCATTTTTCCAATCCTCCG 57.657 39.130 0.00 0.00 0.00 4.63
2251 4705 5.888982 TGATTTATCACTAGGGTTCCTCC 57.111 43.478 0.00 0.00 34.61 4.30
2260 4714 2.610859 GGTTCCTCCCCTGCCTGA 60.611 66.667 0.00 0.00 0.00 3.86
2261 4715 2.671682 GTTCCTCCCCTGCCTGAC 59.328 66.667 0.00 0.00 0.00 3.51
2262 4716 3.003173 TTCCTCCCCTGCCTGACG 61.003 66.667 0.00 0.00 0.00 4.35
2263 4717 3.539593 TTCCTCCCCTGCCTGACGA 62.540 63.158 0.00 0.00 0.00 4.20
2264 4718 3.465403 CCTCCCCTGCCTGACGAG 61.465 72.222 0.00 0.00 0.00 4.18
2265 4719 3.465403 CTCCCCTGCCTGACGAGG 61.465 72.222 0.00 0.00 43.19 4.63
2266 4720 3.965026 CTCCCCTGCCTGACGAGGA 62.965 68.421 0.00 0.00 42.93 3.71
2267 4721 3.775654 CCCCTGCCTGACGAGGAC 61.776 72.222 0.00 0.00 42.93 3.85
2268 4722 2.997315 CCCTGCCTGACGAGGACA 60.997 66.667 0.00 0.00 42.93 4.02
2269 4723 2.362369 CCCTGCCTGACGAGGACAT 61.362 63.158 0.00 0.00 42.93 3.06
2270 4724 1.153489 CCTGCCTGACGAGGACATG 60.153 63.158 0.00 0.00 42.93 3.21
2271 4725 1.593787 CTGCCTGACGAGGACATGT 59.406 57.895 0.00 0.00 42.93 3.21
2272 4726 0.817654 CTGCCTGACGAGGACATGTA 59.182 55.000 0.00 0.00 42.93 2.29
2273 4727 0.530744 TGCCTGACGAGGACATGTAC 59.469 55.000 0.00 0.00 42.93 2.90
2274 4728 0.179108 GCCTGACGAGGACATGTACC 60.179 60.000 3.84 5.34 42.93 3.34
2275 4729 1.475403 CCTGACGAGGACATGTACCT 58.525 55.000 14.40 14.40 42.93 3.08
2276 4730 2.651455 CCTGACGAGGACATGTACCTA 58.349 52.381 14.46 2.07 42.93 3.08
2277 4731 2.619177 CCTGACGAGGACATGTACCTAG 59.381 54.545 14.46 15.82 42.93 3.02
2278 4732 2.619177 CTGACGAGGACATGTACCTAGG 59.381 54.545 20.24 7.41 37.93 3.02
2279 4733 1.955080 GACGAGGACATGTACCTAGGG 59.045 57.143 14.81 13.76 37.93 3.53
2280 4734 1.287146 ACGAGGACATGTACCTAGGGT 59.713 52.381 14.81 14.18 37.93 4.34
2281 4735 2.511218 ACGAGGACATGTACCTAGGGTA 59.489 50.000 14.81 0.12 37.93 3.69
2282 4736 3.147629 CGAGGACATGTACCTAGGGTAG 58.852 54.545 14.81 0.52 39.02 3.18
2292 4746 2.012565 CCTAGGGTAGGGTCTTAGGC 57.987 60.000 0.00 0.00 42.42 3.93
2293 4747 1.482741 CCTAGGGTAGGGTCTTAGGCC 60.483 61.905 0.00 0.00 42.42 5.19
2294 4748 1.504221 CTAGGGTAGGGTCTTAGGCCT 59.496 57.143 11.78 11.78 0.00 5.19
2295 4749 0.031010 AGGGTAGGGTCTTAGGCCTG 60.031 60.000 17.99 0.00 0.00 4.85
2296 4750 0.031414 GGGTAGGGTCTTAGGCCTGA 60.031 60.000 17.99 6.19 0.00 3.86
2297 4751 1.121378 GGTAGGGTCTTAGGCCTGAC 58.879 60.000 17.99 15.40 0.00 3.51
2308 4762 3.242355 GGCCTGACCTACATACCCT 57.758 57.895 0.00 0.00 34.51 4.34
2309 4763 2.393630 GGCCTGACCTACATACCCTA 57.606 55.000 0.00 0.00 34.51 3.53
2310 4764 1.969208 GGCCTGACCTACATACCCTAC 59.031 57.143 0.00 0.00 34.51 3.18
2311 4765 1.969208 GCCTGACCTACATACCCTACC 59.031 57.143 0.00 0.00 0.00 3.18
2312 4766 2.606378 CCTGACCTACATACCCTACCC 58.394 57.143 0.00 0.00 0.00 3.69
2313 4767 2.090943 CCTGACCTACATACCCTACCCA 60.091 54.545 0.00 0.00 0.00 4.51
2314 4768 3.631605 CCTGACCTACATACCCTACCCAA 60.632 52.174 0.00 0.00 0.00 4.12
2315 4769 3.641906 CTGACCTACATACCCTACCCAAG 59.358 52.174 0.00 0.00 0.00 3.61
2316 4770 2.970640 GACCTACATACCCTACCCAAGG 59.029 54.545 0.00 0.00 46.09 3.61
2324 4778 4.420143 CTACCCAAGGACATCGCG 57.580 61.111 0.00 0.00 0.00 5.87
2325 4779 1.515954 CTACCCAAGGACATCGCGT 59.484 57.895 5.77 0.00 0.00 6.01
2326 4780 0.108329 CTACCCAAGGACATCGCGTT 60.108 55.000 5.77 0.00 0.00 4.84
2327 4781 0.108520 TACCCAAGGACATCGCGTTC 60.109 55.000 5.77 0.84 0.00 3.95
2328 4782 1.375396 CCCAAGGACATCGCGTTCA 60.375 57.895 5.77 0.00 0.00 3.18
2329 4783 0.953471 CCCAAGGACATCGCGTTCAA 60.953 55.000 5.77 0.00 0.00 2.69
2330 4784 0.443869 CCAAGGACATCGCGTTCAAG 59.556 55.000 5.77 0.00 0.00 3.02
2331 4785 0.443869 CAAGGACATCGCGTTCAAGG 59.556 55.000 5.77 0.00 0.00 3.61
2332 4786 0.320374 AAGGACATCGCGTTCAAGGA 59.680 50.000 5.77 0.00 0.00 3.36
2333 4787 0.389948 AGGACATCGCGTTCAAGGAC 60.390 55.000 5.77 0.00 0.00 3.85
2334 4788 0.669318 GGACATCGCGTTCAAGGACA 60.669 55.000 5.77 0.00 0.00 4.02
2335 4789 0.438830 GACATCGCGTTCAAGGACAC 59.561 55.000 5.77 0.00 0.00 3.67
2336 4790 0.949105 ACATCGCGTTCAAGGACACC 60.949 55.000 5.77 0.00 0.00 4.16
2337 4791 1.736645 ATCGCGTTCAAGGACACCG 60.737 57.895 5.77 0.00 0.00 4.94
2338 4792 2.149803 ATCGCGTTCAAGGACACCGA 62.150 55.000 5.77 0.00 0.00 4.69
2339 4793 2.372690 CGCGTTCAAGGACACCGAG 61.373 63.158 0.00 0.00 0.00 4.63
2340 4794 2.027625 GCGTTCAAGGACACCGAGG 61.028 63.158 0.00 0.00 0.00 4.63
2341 4795 2.027625 CGTTCAAGGACACCGAGGC 61.028 63.158 0.00 0.00 0.00 4.70
2347 4801 3.948719 GGACACCGAGGCCCACAA 61.949 66.667 0.00 0.00 40.85 3.33
2348 4802 2.358737 GACACCGAGGCCCACAAG 60.359 66.667 0.00 0.00 0.00 3.16
2349 4803 2.847234 ACACCGAGGCCCACAAGA 60.847 61.111 0.00 0.00 0.00 3.02
2350 4804 2.185310 GACACCGAGGCCCACAAGAT 62.185 60.000 0.00 0.00 0.00 2.40
2351 4805 1.002134 CACCGAGGCCCACAAGATT 60.002 57.895 0.00 0.00 0.00 2.40
2352 4806 0.251916 CACCGAGGCCCACAAGATTA 59.748 55.000 0.00 0.00 0.00 1.75
2353 4807 1.134098 CACCGAGGCCCACAAGATTAT 60.134 52.381 0.00 0.00 0.00 1.28
2354 4808 1.134098 ACCGAGGCCCACAAGATTATG 60.134 52.381 0.00 0.00 0.00 1.90
2355 4809 1.140852 CCGAGGCCCACAAGATTATGA 59.859 52.381 0.00 0.00 0.00 2.15
2356 4810 2.487934 CGAGGCCCACAAGATTATGAG 58.512 52.381 0.00 0.00 0.00 2.90
2357 4811 2.103094 CGAGGCCCACAAGATTATGAGA 59.897 50.000 0.00 0.00 0.00 3.27
2358 4812 3.737850 GAGGCCCACAAGATTATGAGAG 58.262 50.000 0.00 0.00 0.00 3.20
2359 4813 3.387962 AGGCCCACAAGATTATGAGAGA 58.612 45.455 0.00 0.00 0.00 3.10
2360 4814 3.390639 AGGCCCACAAGATTATGAGAGAG 59.609 47.826 0.00 0.00 0.00 3.20
2361 4815 3.135530 GGCCCACAAGATTATGAGAGAGT 59.864 47.826 0.00 0.00 0.00 3.24
2362 4816 4.376146 GCCCACAAGATTATGAGAGAGTC 58.624 47.826 0.00 0.00 0.00 3.36
2363 4817 4.141846 GCCCACAAGATTATGAGAGAGTCA 60.142 45.833 0.00 0.00 40.38 3.41
2364 4818 5.355596 CCCACAAGATTATGAGAGAGTCAC 58.644 45.833 0.00 0.00 38.28 3.67
2365 4819 5.355596 CCACAAGATTATGAGAGAGTCACC 58.644 45.833 0.00 0.00 38.28 4.02
2366 4820 5.039984 CACAAGATTATGAGAGAGTCACCG 58.960 45.833 0.00 0.00 38.28 4.94
2367 4821 4.098654 ACAAGATTATGAGAGAGTCACCGG 59.901 45.833 0.00 0.00 38.28 5.28
2368 4822 2.625790 AGATTATGAGAGAGTCACCGGC 59.374 50.000 0.00 0.00 38.28 6.13
2369 4823 2.145397 TTATGAGAGAGTCACCGGCT 57.855 50.000 0.00 0.00 38.28 5.52
2370 4824 1.393603 TATGAGAGAGTCACCGGCTG 58.606 55.000 0.00 0.00 38.28 4.85
2371 4825 0.323816 ATGAGAGAGTCACCGGCTGA 60.324 55.000 0.00 1.26 38.28 4.26
2372 4826 0.962855 TGAGAGAGTCACCGGCTGAG 60.963 60.000 0.00 0.00 0.00 3.35
2373 4827 0.678366 GAGAGAGTCACCGGCTGAGA 60.678 60.000 0.00 0.00 0.00 3.27
2374 4828 0.033601 AGAGAGTCACCGGCTGAGAT 60.034 55.000 0.00 0.00 0.00 2.75
2375 4829 1.213182 AGAGAGTCACCGGCTGAGATA 59.787 52.381 0.00 0.00 0.00 1.98
2376 4830 2.158534 AGAGAGTCACCGGCTGAGATAT 60.159 50.000 0.00 0.00 0.00 1.63
2377 4831 2.227865 GAGAGTCACCGGCTGAGATATC 59.772 54.545 0.00 0.00 0.00 1.63
2378 4832 2.158534 AGAGTCACCGGCTGAGATATCT 60.159 50.000 4.47 4.47 0.00 1.98
2379 4833 3.073209 AGAGTCACCGGCTGAGATATCTA 59.927 47.826 4.89 0.00 0.00 1.98
2380 4834 3.150767 AGTCACCGGCTGAGATATCTAC 58.849 50.000 4.89 0.39 0.00 2.59
2381 4835 2.095668 GTCACCGGCTGAGATATCTACG 60.096 54.545 4.89 8.22 0.00 3.51
2382 4836 0.882474 ACCGGCTGAGATATCTACGC 59.118 55.000 4.89 10.83 0.00 4.42
2383 4837 0.171455 CCGGCTGAGATATCTACGCC 59.829 60.000 24.76 24.76 37.77 5.68
2384 4838 0.171455 CGGCTGAGATATCTACGCCC 59.829 60.000 26.84 15.69 37.82 6.13
2385 4839 1.551452 GGCTGAGATATCTACGCCCT 58.449 55.000 24.42 0.00 36.16 5.19
2386 4840 2.724454 GGCTGAGATATCTACGCCCTA 58.276 52.381 24.42 1.27 36.16 3.53
2387 4841 2.424246 GGCTGAGATATCTACGCCCTAC 59.576 54.545 24.42 5.46 36.16 3.18
2388 4842 3.349022 GCTGAGATATCTACGCCCTACT 58.651 50.000 4.89 0.00 0.00 2.57
2389 4843 4.515361 GCTGAGATATCTACGCCCTACTA 58.485 47.826 4.89 0.00 0.00 1.82
2390 4844 4.573201 GCTGAGATATCTACGCCCTACTAG 59.427 50.000 4.89 0.00 0.00 2.57
2391 4845 5.736813 CTGAGATATCTACGCCCTACTAGT 58.263 45.833 4.89 0.00 0.00 2.57
2392 4846 5.732633 TGAGATATCTACGCCCTACTAGTC 58.267 45.833 4.89 0.00 0.00 2.59
2393 4847 5.247792 TGAGATATCTACGCCCTACTAGTCA 59.752 44.000 4.89 0.00 0.00 3.41
2394 4848 5.490159 AGATATCTACGCCCTACTAGTCAC 58.510 45.833 2.53 0.00 0.00 3.67
2395 4849 3.860968 ATCTACGCCCTACTAGTCACT 57.139 47.619 0.00 0.00 0.00 3.41
2396 4850 3.191078 TCTACGCCCTACTAGTCACTC 57.809 52.381 0.00 0.00 0.00 3.51
2397 4851 1.865970 CTACGCCCTACTAGTCACTCG 59.134 57.143 0.00 2.25 0.00 4.18
2398 4852 0.251354 ACGCCCTACTAGTCACTCGA 59.749 55.000 0.00 0.00 0.00 4.04
2399 4853 0.656785 CGCCCTACTAGTCACTCGAC 59.343 60.000 0.00 0.00 42.95 4.20
2400 4854 1.747709 GCCCTACTAGTCACTCGACA 58.252 55.000 0.00 0.00 45.23 4.35
2401 4855 1.401199 GCCCTACTAGTCACTCGACAC 59.599 57.143 0.00 0.00 45.23 3.67
2402 4856 2.708051 CCCTACTAGTCACTCGACACA 58.292 52.381 0.00 0.00 45.23 3.72
2403 4857 2.678836 CCCTACTAGTCACTCGACACAG 59.321 54.545 0.00 0.00 45.23 3.66
2404 4858 2.678836 CCTACTAGTCACTCGACACAGG 59.321 54.545 0.00 0.00 45.23 4.00
2405 4859 2.273538 ACTAGTCACTCGACACAGGT 57.726 50.000 0.00 0.00 45.23 4.00
2406 4860 2.584236 ACTAGTCACTCGACACAGGTT 58.416 47.619 0.00 0.00 45.23 3.50
2407 4861 2.553172 ACTAGTCACTCGACACAGGTTC 59.447 50.000 0.00 0.00 45.23 3.62
2408 4862 0.674534 AGTCACTCGACACAGGTTCC 59.325 55.000 0.00 0.00 45.23 3.62
2409 4863 0.387929 GTCACTCGACACAGGTTCCA 59.612 55.000 0.00 0.00 42.13 3.53
2410 4864 0.387929 TCACTCGACACAGGTTCCAC 59.612 55.000 0.00 0.00 0.00 4.02
2411 4865 0.600255 CACTCGACACAGGTTCCACC 60.600 60.000 0.00 0.00 38.99 4.61
2412 4866 1.004918 CTCGACACAGGTTCCACCC 60.005 63.158 0.00 0.00 39.75 4.61
2413 4867 2.357034 CGACACAGGTTCCACCCG 60.357 66.667 0.00 0.00 39.75 5.28
2414 4868 2.863346 CGACACAGGTTCCACCCGA 61.863 63.158 0.00 0.00 39.75 5.14
2415 4869 1.448497 GACACAGGTTCCACCCGAA 59.552 57.895 0.00 0.00 39.75 4.30
2416 4870 0.179040 GACACAGGTTCCACCCGAAA 60.179 55.000 0.00 0.00 39.75 3.46
2417 4871 0.179029 ACACAGGTTCCACCCGAAAG 60.179 55.000 0.00 0.00 39.75 2.62
2432 4886 2.350522 CGAAAGGGTCTTGATCACTGG 58.649 52.381 0.00 0.00 0.00 4.00
2433 4887 2.028112 CGAAAGGGTCTTGATCACTGGA 60.028 50.000 0.00 0.00 0.00 3.86
2434 4888 3.339141 GAAAGGGTCTTGATCACTGGAC 58.661 50.000 0.00 4.56 0.00 4.02
2435 4889 1.280457 AGGGTCTTGATCACTGGACC 58.720 55.000 23.12 23.12 45.18 4.46
2436 4890 0.108138 GGGTCTTGATCACTGGACCG 60.108 60.000 23.71 0.60 46.41 4.79
2437 4891 0.608640 GGTCTTGATCACTGGACCGT 59.391 55.000 19.37 0.00 38.77 4.83
2438 4892 1.404315 GGTCTTGATCACTGGACCGTC 60.404 57.143 19.37 0.00 38.77 4.79
2439 4893 0.895530 TCTTGATCACTGGACCGTCC 59.104 55.000 10.96 10.96 36.96 4.79
2440 4894 0.108138 CTTGATCACTGGACCGTCCC 60.108 60.000 15.24 0.00 35.03 4.46
2441 4895 0.834261 TTGATCACTGGACCGTCCCA 60.834 55.000 15.24 1.55 35.03 4.37
2442 4896 0.834261 TGATCACTGGACCGTCCCAA 60.834 55.000 15.24 0.00 35.03 4.12
2443 4897 0.541863 GATCACTGGACCGTCCCAAT 59.458 55.000 15.24 3.27 35.03 3.16
2444 4898 0.991920 ATCACTGGACCGTCCCAATT 59.008 50.000 15.24 0.00 35.03 2.32
2445 4899 0.323629 TCACTGGACCGTCCCAATTC 59.676 55.000 15.24 0.00 35.03 2.17
2446 4900 0.036164 CACTGGACCGTCCCAATTCA 59.964 55.000 15.24 0.00 35.03 2.57
2447 4901 0.036306 ACTGGACCGTCCCAATTCAC 59.964 55.000 15.24 0.00 35.03 3.18
2448 4902 0.324943 CTGGACCGTCCCAATTCACT 59.675 55.000 15.24 0.00 35.03 3.41
2449 4903 0.323629 TGGACCGTCCCAATTCACTC 59.676 55.000 15.24 0.00 35.03 3.51
2450 4904 0.739813 GGACCGTCCCAATTCACTCG 60.740 60.000 6.25 0.00 0.00 4.18
2451 4905 0.739813 GACCGTCCCAATTCACTCGG 60.740 60.000 0.00 0.00 42.94 4.63
2452 4906 1.189524 ACCGTCCCAATTCACTCGGA 61.190 55.000 13.19 0.00 40.90 4.55
2453 4907 0.460284 CCGTCCCAATTCACTCGGAG 60.460 60.000 2.83 2.83 40.29 4.63
2454 4908 0.246635 CGTCCCAATTCACTCGGAGT 59.753 55.000 4.45 4.45 0.00 3.85
2455 4909 1.475280 CGTCCCAATTCACTCGGAGTA 59.525 52.381 10.87 0.00 0.00 2.59
2456 4910 2.734492 CGTCCCAATTCACTCGGAGTAC 60.734 54.545 10.87 1.96 0.00 2.73
2457 4911 1.829222 TCCCAATTCACTCGGAGTACC 59.171 52.381 10.87 0.00 0.00 3.34
2458 4912 1.553248 CCCAATTCACTCGGAGTACCA 59.447 52.381 10.87 0.00 35.59 3.25
2459 4913 2.027561 CCCAATTCACTCGGAGTACCAA 60.028 50.000 10.87 4.71 35.59 3.67
2460 4914 3.262420 CCAATTCACTCGGAGTACCAAG 58.738 50.000 10.87 0.00 35.59 3.61
2461 4915 3.306780 CCAATTCACTCGGAGTACCAAGT 60.307 47.826 10.87 0.90 35.59 3.16
2462 4916 4.081862 CCAATTCACTCGGAGTACCAAGTA 60.082 45.833 10.87 0.00 35.59 2.24
2463 4917 5.395324 CCAATTCACTCGGAGTACCAAGTAT 60.395 44.000 10.87 0.00 35.59 2.12
2464 4918 4.978083 TTCACTCGGAGTACCAAGTATC 57.022 45.455 10.87 0.00 35.59 2.24
2465 4919 3.959293 TCACTCGGAGTACCAAGTATCA 58.041 45.455 10.87 0.00 35.59 2.15
2466 4920 3.693085 TCACTCGGAGTACCAAGTATCAC 59.307 47.826 10.87 0.00 35.59 3.06
2467 4921 3.695060 CACTCGGAGTACCAAGTATCACT 59.305 47.826 10.87 0.00 35.59 3.41
2468 4922 3.946558 ACTCGGAGTACCAAGTATCACTC 59.053 47.826 9.33 0.00 37.32 3.51
2469 4923 2.941064 TCGGAGTACCAAGTATCACTCG 59.059 50.000 0.00 0.00 38.62 4.18
2470 4924 2.033049 CGGAGTACCAAGTATCACTCGG 59.967 54.545 0.00 0.00 38.62 4.63
2471 4925 3.285484 GGAGTACCAAGTATCACTCGGA 58.715 50.000 0.00 0.00 38.62 4.55
2472 4926 3.698040 GGAGTACCAAGTATCACTCGGAA 59.302 47.826 0.00 0.00 38.62 4.30
2473 4927 4.202030 GGAGTACCAAGTATCACTCGGAAG 60.202 50.000 0.00 0.00 38.62 3.46
2474 4928 2.674796 ACCAAGTATCACTCGGAAGC 57.325 50.000 0.00 0.00 0.00 3.86
2475 4929 1.899814 ACCAAGTATCACTCGGAAGCA 59.100 47.619 0.00 0.00 0.00 3.91
2476 4930 2.093973 ACCAAGTATCACTCGGAAGCAG 60.094 50.000 0.00 0.00 0.00 4.24
2477 4931 2.544685 CAAGTATCACTCGGAAGCAGG 58.455 52.381 0.00 0.00 0.00 4.85
2478 4932 2.145397 AGTATCACTCGGAAGCAGGA 57.855 50.000 0.00 0.00 0.00 3.86
2479 4933 2.028130 AGTATCACTCGGAAGCAGGAG 58.972 52.381 0.00 0.00 36.36 3.69
2480 4934 2.025155 GTATCACTCGGAAGCAGGAGA 58.975 52.381 0.00 0.00 34.40 3.71
2481 4935 0.820871 ATCACTCGGAAGCAGGAGAC 59.179 55.000 0.00 0.00 34.40 3.36
2482 4936 0.251386 TCACTCGGAAGCAGGAGACT 60.251 55.000 0.00 0.00 46.44 3.24
2483 4937 0.605589 CACTCGGAAGCAGGAGACTT 59.394 55.000 0.00 0.00 40.21 3.01
2484 4938 1.819288 CACTCGGAAGCAGGAGACTTA 59.181 52.381 0.00 0.00 40.21 2.24
2485 4939 2.096248 ACTCGGAAGCAGGAGACTTAG 58.904 52.381 0.00 0.00 40.21 2.18
2486 4940 2.291024 ACTCGGAAGCAGGAGACTTAGA 60.291 50.000 0.00 0.00 40.21 2.10
2487 4941 2.357637 CTCGGAAGCAGGAGACTTAGAG 59.642 54.545 0.00 0.00 40.21 2.43
2488 4942 2.096248 CGGAAGCAGGAGACTTAGAGT 58.904 52.381 0.00 0.00 40.21 3.24
2489 4943 2.098443 CGGAAGCAGGAGACTTAGAGTC 59.902 54.545 0.00 0.00 45.38 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 2.127297 CCCTTCCCTCCCCTCCAA 59.873 66.667 0.00 0.00 0.00 3.53
747 920 7.573968 ATTCTGCACACCTAAATCTTATTCC 57.426 36.000 0.00 0.00 0.00 3.01
831 1006 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
832 1007 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
833 1008 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
834 1009 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
835 1010 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
836 1011 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
837 1012 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
838 1013 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
839 1014 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
840 1015 2.028930 TCTACACACACACACACACACA 60.029 45.455 0.00 0.00 0.00 3.72
841 1016 2.603110 CTCTACACACACACACACACAC 59.397 50.000 0.00 0.00 0.00 3.82
842 1017 2.494073 TCTCTACACACACACACACACA 59.506 45.455 0.00 0.00 0.00 3.72
843 1018 3.159353 TCTCTACACACACACACACAC 57.841 47.619 0.00 0.00 0.00 3.82
844 1019 3.780902 CTTCTCTACACACACACACACA 58.219 45.455 0.00 0.00 0.00 3.72
845 1020 2.540101 GCTTCTCTACACACACACACAC 59.460 50.000 0.00 0.00 0.00 3.82
846 1021 2.798145 CGCTTCTCTACACACACACACA 60.798 50.000 0.00 0.00 0.00 3.72
847 1022 1.787155 CGCTTCTCTACACACACACAC 59.213 52.381 0.00 0.00 0.00 3.82
848 1023 1.679153 TCGCTTCTCTACACACACACA 59.321 47.619 0.00 0.00 0.00 3.72
849 1024 2.417339 TCGCTTCTCTACACACACAC 57.583 50.000 0.00 0.00 0.00 3.82
850 1025 3.660501 ATTCGCTTCTCTACACACACA 57.339 42.857 0.00 0.00 0.00 3.72
851 1026 3.542704 CGTATTCGCTTCTCTACACACAC 59.457 47.826 0.00 0.00 0.00 3.82
852 1027 3.427098 CCGTATTCGCTTCTCTACACACA 60.427 47.826 0.00 0.00 35.54 3.72
853 1028 3.106672 CCGTATTCGCTTCTCTACACAC 58.893 50.000 0.00 0.00 35.54 3.82
854 1029 2.751259 ACCGTATTCGCTTCTCTACACA 59.249 45.455 0.00 0.00 35.54 3.72
855 1030 3.417690 ACCGTATTCGCTTCTCTACAC 57.582 47.619 0.00 0.00 35.54 2.90
856 1031 5.762825 AATACCGTATTCGCTTCTCTACA 57.237 39.130 0.00 0.00 35.54 2.74
857 1032 5.787551 CGTAATACCGTATTCGCTTCTCTAC 59.212 44.000 7.06 0.00 35.54 2.59
858 1033 5.106948 CCGTAATACCGTATTCGCTTCTCTA 60.107 44.000 7.06 0.00 35.54 2.43
859 1034 4.320057 CCGTAATACCGTATTCGCTTCTCT 60.320 45.833 7.06 0.00 35.54 3.10
860 1035 3.910767 CCGTAATACCGTATTCGCTTCTC 59.089 47.826 7.06 0.00 35.54 2.87
920 1098 2.098443 GCCGGTTTGTGAGTTTTGAGAA 59.902 45.455 1.90 0.00 0.00 2.87
925 1103 1.064952 CGAAGCCGGTTTGTGAGTTTT 59.935 47.619 8.82 0.00 0.00 2.43
984 1164 6.580041 CGGCATGCATCTTCTTGTTAATTATC 59.420 38.462 21.36 0.00 0.00 1.75
988 1168 3.489738 GCGGCATGCATCTTCTTGTTAAT 60.490 43.478 21.36 0.00 45.45 1.40
1009 1189 0.965363 TTTTCAGCGGGGAAGATGGC 60.965 55.000 0.00 0.00 0.00 4.40
1013 1193 4.397348 GCTTTTCAGCGGGGAAGA 57.603 55.556 4.80 0.00 35.91 2.87
1023 1203 3.076621 AGACATGCATCTTCGCTTTTCA 58.923 40.909 0.00 0.00 0.00 2.69
1025 1205 2.421424 GGAGACATGCATCTTCGCTTTT 59.579 45.455 0.00 0.00 0.00 2.27
1029 1209 1.596727 GAAGGAGACATGCATCTTCGC 59.403 52.381 8.75 5.04 0.00 4.70
1168 1348 3.269643 TCCAGTAGATCTCCTCTGGTCAA 59.730 47.826 26.43 14.38 45.18 3.18
1171 1351 2.856231 AGTCCAGTAGATCTCCTCTGGT 59.144 50.000 26.43 14.85 45.18 4.00
1267 1447 2.434185 GCGTGGATGGAAGCACGA 60.434 61.111 0.00 0.00 42.84 4.35
1343 1523 4.820894 AGGTTAAAGAAGCGGATGTAGT 57.179 40.909 0.00 0.00 38.14 2.73
1374 1554 2.357517 CAGACGCGGACAAAGGCT 60.358 61.111 12.47 0.00 0.00 4.58
1388 1568 1.699083 TCCTGAACAATGGCAGACAGA 59.301 47.619 6.90 0.00 34.06 3.41
1389 1569 2.189594 TCCTGAACAATGGCAGACAG 57.810 50.000 6.90 0.00 34.06 3.51
1468 1650 1.006758 AGGGTGTAGAAGACGGATGGA 59.993 52.381 0.00 0.00 0.00 3.41
1493 1675 2.143122 GAAGCTCAACAATGTCACGGA 58.857 47.619 0.00 0.00 0.00 4.69
1553 1735 6.786843 ATACTATTCCTTGGTCCCATGATT 57.213 37.500 0.00 0.00 0.00 2.57
1573 2226 1.029408 TGGATGCGTGTGGCCAATAC 61.029 55.000 7.24 9.43 42.61 1.89
1575 2228 1.380246 ATGGATGCGTGTGGCCAAT 60.380 52.632 7.24 0.00 42.61 3.16
1576 2229 2.035469 ATGGATGCGTGTGGCCAA 59.965 55.556 7.24 0.00 42.61 4.52
1579 2232 3.576356 CGGATGGATGCGTGTGGC 61.576 66.667 0.00 0.00 43.96 5.01
1586 2239 2.474816 GTGTAGAAGACGGATGGATGC 58.525 52.381 0.00 0.00 0.00 3.91
1587 2240 2.224066 GGGTGTAGAAGACGGATGGATG 60.224 54.545 0.00 0.00 0.00 3.51
1589 2242 1.006758 AGGGTGTAGAAGACGGATGGA 59.993 52.381 0.00 0.00 0.00 3.41
1590 2243 1.409427 GAGGGTGTAGAAGACGGATGG 59.591 57.143 0.00 0.00 0.00 3.51
1594 2247 2.761208 AGATTGAGGGTGTAGAAGACGG 59.239 50.000 0.00 0.00 0.00 4.79
1595 2248 4.457834 AAGATTGAGGGTGTAGAAGACG 57.542 45.455 0.00 0.00 0.00 4.18
1596 2249 6.532988 AGTAAGATTGAGGGTGTAGAAGAC 57.467 41.667 0.00 0.00 0.00 3.01
1597 2250 8.840200 ATAAGTAAGATTGAGGGTGTAGAAGA 57.160 34.615 0.00 0.00 0.00 2.87
1598 2251 9.535878 GAATAAGTAAGATTGAGGGTGTAGAAG 57.464 37.037 0.00 0.00 0.00 2.85
1599 2252 9.268282 AGAATAAGTAAGATTGAGGGTGTAGAA 57.732 33.333 0.00 0.00 0.00 2.10
1600 2253 8.840200 AGAATAAGTAAGATTGAGGGTGTAGA 57.160 34.615 0.00 0.00 0.00 2.59
1602 2255 9.710818 AGTAGAATAAGTAAGATTGAGGGTGTA 57.289 33.333 0.00 0.00 0.00 2.90
1603 2256 8.611051 AGTAGAATAAGTAAGATTGAGGGTGT 57.389 34.615 0.00 0.00 0.00 4.16
1659 2675 6.183360 ACAATTGTTCTGCATTTTCAGGGTAA 60.183 34.615 4.92 0.00 34.91 2.85
1660 2676 5.304101 ACAATTGTTCTGCATTTTCAGGGTA 59.696 36.000 4.92 0.00 34.91 3.69
1727 4118 9.837525 GTAGTAGTACATCCTATTGTAAATCCG 57.162 37.037 2.52 0.00 34.05 4.18
1771 4168 5.871396 AGCAGAAGACCTAAATCCGAATA 57.129 39.130 0.00 0.00 0.00 1.75
1839 4237 4.025647 GCTACGCACTGATTTTGTCTATCC 60.026 45.833 0.00 0.00 0.00 2.59
1874 4305 2.949714 AAAGCAGAACAACGTCATCG 57.050 45.000 0.00 0.00 43.34 3.84
2040 4473 0.184451 ATGAAGCATGGTGCCCCTAG 59.816 55.000 0.00 0.00 46.52 3.02
2042 4475 1.380785 CATGAAGCATGGTGCCCCT 60.381 57.895 0.00 0.00 46.52 4.79
2062 4509 6.711194 AGCAAGATCTAGACATGATCCAATTG 59.289 38.462 0.00 0.00 40.69 2.32
2210 4664 3.088532 TCACGGAGGATTGGAAAAATGG 58.911 45.455 0.00 0.00 0.00 3.16
2215 4669 5.588648 GTGATAAATCACGGAGGATTGGAAA 59.411 40.000 7.31 0.00 46.46 3.13
2228 4682 5.612351 GGAGGAACCCTAGTGATAAATCAC 58.388 45.833 14.00 14.00 45.12 3.06
2243 4697 2.610859 TCAGGCAGGGGAGGAACC 60.611 66.667 0.00 0.00 38.08 3.62
2244 4698 2.671682 GTCAGGCAGGGGAGGAAC 59.328 66.667 0.00 0.00 0.00 3.62
2245 4699 3.003173 CGTCAGGCAGGGGAGGAA 61.003 66.667 0.00 0.00 0.00 3.36
2246 4700 3.965026 CTCGTCAGGCAGGGGAGGA 62.965 68.421 0.00 0.00 0.00 3.71
2247 4701 3.465403 CTCGTCAGGCAGGGGAGG 61.465 72.222 0.00 0.00 0.00 4.30
2248 4702 3.465403 CCTCGTCAGGCAGGGGAG 61.465 72.222 0.00 0.00 30.98 4.30
2249 4703 3.992641 TCCTCGTCAGGCAGGGGA 61.993 66.667 0.00 0.00 40.12 4.81
2250 4704 3.775654 GTCCTCGTCAGGCAGGGG 61.776 72.222 0.00 0.00 40.12 4.79
2251 4705 2.362369 ATGTCCTCGTCAGGCAGGG 61.362 63.158 0.00 0.00 40.12 4.45
2252 4706 1.153489 CATGTCCTCGTCAGGCAGG 60.153 63.158 0.00 0.00 40.12 4.85
2253 4707 0.817654 TACATGTCCTCGTCAGGCAG 59.182 55.000 0.00 0.00 40.12 4.85
2254 4708 0.530744 GTACATGTCCTCGTCAGGCA 59.469 55.000 0.00 0.00 40.12 4.75
2255 4709 0.179108 GGTACATGTCCTCGTCAGGC 60.179 60.000 0.00 0.00 40.12 4.85
2256 4710 1.475403 AGGTACATGTCCTCGTCAGG 58.525 55.000 0.00 0.00 42.01 3.86
2257 4711 2.619177 CCTAGGTACATGTCCTCGTCAG 59.381 54.545 16.95 10.68 36.60 3.51
2258 4712 2.651455 CCTAGGTACATGTCCTCGTCA 58.349 52.381 16.95 3.32 36.60 4.35
2259 4713 1.955080 CCCTAGGTACATGTCCTCGTC 59.045 57.143 16.95 0.00 36.60 4.20
2260 4714 1.287146 ACCCTAGGTACATGTCCTCGT 59.713 52.381 16.95 10.87 36.60 4.18
2261 4715 2.068834 ACCCTAGGTACATGTCCTCG 57.931 55.000 16.95 12.28 36.60 4.63
2262 4716 3.498334 CCTACCCTAGGTACATGTCCTC 58.502 54.545 16.95 4.10 41.18 3.71
2263 4717 2.179424 CCCTACCCTAGGTACATGTCCT 59.821 54.545 17.41 17.41 44.73 3.85
2264 4718 2.090887 ACCCTACCCTAGGTACATGTCC 60.091 54.545 8.29 3.73 44.73 4.02
2265 4719 3.117208 AGACCCTACCCTAGGTACATGTC 60.117 52.174 8.29 8.72 44.73 3.06
2266 4720 2.863879 AGACCCTACCCTAGGTACATGT 59.136 50.000 8.29 2.69 44.73 3.21
2267 4721 3.614568 AGACCCTACCCTAGGTACATG 57.385 52.381 8.29 0.00 44.73 3.21
2268 4722 4.107636 CCTAAGACCCTACCCTAGGTACAT 59.892 50.000 8.29 0.00 44.73 2.29
2269 4723 3.464833 CCTAAGACCCTACCCTAGGTACA 59.535 52.174 8.29 0.00 44.73 2.90
2270 4724 3.753519 GCCTAAGACCCTACCCTAGGTAC 60.754 56.522 8.29 0.00 44.73 3.34
2271 4725 2.448577 GCCTAAGACCCTACCCTAGGTA 59.551 54.545 8.29 0.00 44.73 3.08
2272 4726 1.219980 GCCTAAGACCCTACCCTAGGT 59.780 57.143 8.29 0.00 44.73 3.08
2273 4727 1.482741 GGCCTAAGACCCTACCCTAGG 60.483 61.905 0.06 0.06 45.81 3.02
2274 4728 1.504221 AGGCCTAAGACCCTACCCTAG 59.496 57.143 1.29 0.00 0.00 3.02
2275 4729 1.219724 CAGGCCTAAGACCCTACCCTA 59.780 57.143 3.98 0.00 0.00 3.53
2276 4730 0.031010 CAGGCCTAAGACCCTACCCT 60.031 60.000 3.98 0.00 0.00 4.34
2277 4731 0.031414 TCAGGCCTAAGACCCTACCC 60.031 60.000 3.98 0.00 0.00 3.69
2278 4732 1.121378 GTCAGGCCTAAGACCCTACC 58.879 60.000 3.98 0.00 0.00 3.18
2279 4733 1.121378 GGTCAGGCCTAAGACCCTAC 58.879 60.000 25.46 6.30 46.79 3.18
2280 4734 3.629220 GGTCAGGCCTAAGACCCTA 57.371 57.895 25.46 0.00 46.79 3.53
2281 4735 4.482431 GGTCAGGCCTAAGACCCT 57.518 61.111 25.46 0.00 46.79 4.34
2290 4744 1.969208 GTAGGGTATGTAGGTCAGGCC 59.031 57.143 0.00 0.00 37.58 5.19
2291 4745 1.969208 GGTAGGGTATGTAGGTCAGGC 59.031 57.143 0.00 0.00 0.00 4.85
2292 4746 2.090943 TGGGTAGGGTATGTAGGTCAGG 60.091 54.545 0.00 0.00 0.00 3.86
2293 4747 3.323774 TGGGTAGGGTATGTAGGTCAG 57.676 52.381 0.00 0.00 0.00 3.51
2294 4748 3.631605 CCTTGGGTAGGGTATGTAGGTCA 60.632 52.174 0.00 0.00 40.67 4.02
2295 4749 2.970640 CCTTGGGTAGGGTATGTAGGTC 59.029 54.545 0.00 0.00 40.67 3.85
2296 4750 2.593466 TCCTTGGGTAGGGTATGTAGGT 59.407 50.000 0.00 0.00 44.86 3.08
2297 4751 2.970640 GTCCTTGGGTAGGGTATGTAGG 59.029 54.545 0.00 0.00 44.86 3.18
2298 4752 3.649843 TGTCCTTGGGTAGGGTATGTAG 58.350 50.000 0.00 0.00 44.86 2.74
2299 4753 3.780516 TGTCCTTGGGTAGGGTATGTA 57.219 47.619 0.00 0.00 44.86 2.29
2300 4754 2.653543 TGTCCTTGGGTAGGGTATGT 57.346 50.000 0.00 0.00 44.86 2.29
2301 4755 2.037251 CGATGTCCTTGGGTAGGGTATG 59.963 54.545 0.00 0.00 44.86 2.39
2302 4756 2.326428 CGATGTCCTTGGGTAGGGTAT 58.674 52.381 0.00 0.00 44.86 2.73
2303 4757 1.784358 CGATGTCCTTGGGTAGGGTA 58.216 55.000 0.00 0.00 44.86 3.69
2304 4758 1.623542 GCGATGTCCTTGGGTAGGGT 61.624 60.000 0.00 0.00 44.86 4.34
2305 4759 1.146263 GCGATGTCCTTGGGTAGGG 59.854 63.158 0.00 0.00 44.86 3.53
2306 4760 1.227263 CGCGATGTCCTTGGGTAGG 60.227 63.158 0.00 0.00 46.27 3.18
2307 4761 0.108329 AACGCGATGTCCTTGGGTAG 60.108 55.000 15.93 0.00 33.44 3.18
2308 4762 0.108520 GAACGCGATGTCCTTGGGTA 60.109 55.000 15.93 0.00 33.44 3.69
2309 4763 1.375523 GAACGCGATGTCCTTGGGT 60.376 57.895 15.93 0.00 36.01 4.51
2310 4764 0.953471 TTGAACGCGATGTCCTTGGG 60.953 55.000 15.93 0.00 0.00 4.12
2311 4765 0.443869 CTTGAACGCGATGTCCTTGG 59.556 55.000 15.93 0.00 0.00 3.61
2312 4766 0.443869 CCTTGAACGCGATGTCCTTG 59.556 55.000 15.93 0.30 0.00 3.61
2313 4767 0.320374 TCCTTGAACGCGATGTCCTT 59.680 50.000 15.93 0.00 0.00 3.36
2314 4768 0.389948 GTCCTTGAACGCGATGTCCT 60.390 55.000 15.93 0.00 0.00 3.85
2315 4769 0.669318 TGTCCTTGAACGCGATGTCC 60.669 55.000 15.93 0.00 0.00 4.02
2316 4770 0.438830 GTGTCCTTGAACGCGATGTC 59.561 55.000 15.93 7.76 0.00 3.06
2317 4771 0.949105 GGTGTCCTTGAACGCGATGT 60.949 55.000 15.93 0.00 0.00 3.06
2318 4772 1.787847 GGTGTCCTTGAACGCGATG 59.212 57.895 15.93 0.00 0.00 3.84
2319 4773 1.736645 CGGTGTCCTTGAACGCGAT 60.737 57.895 15.93 0.00 0.00 4.58
2320 4774 2.355363 CGGTGTCCTTGAACGCGA 60.355 61.111 15.93 0.00 0.00 5.87
2321 4775 2.355363 TCGGTGTCCTTGAACGCG 60.355 61.111 3.53 3.53 0.00 6.01
2322 4776 2.027625 CCTCGGTGTCCTTGAACGC 61.028 63.158 0.00 0.00 0.00 4.84
2323 4777 2.027625 GCCTCGGTGTCCTTGAACG 61.028 63.158 0.00 0.00 0.00 3.95
2324 4778 1.671379 GGCCTCGGTGTCCTTGAAC 60.671 63.158 0.00 0.00 0.00 3.18
2325 4779 2.747686 GGCCTCGGTGTCCTTGAA 59.252 61.111 0.00 0.00 0.00 2.69
2326 4780 3.319198 GGGCCTCGGTGTCCTTGA 61.319 66.667 0.84 0.00 0.00 3.02
2327 4781 3.636231 TGGGCCTCGGTGTCCTTG 61.636 66.667 4.53 0.00 0.00 3.61
2328 4782 3.637273 GTGGGCCTCGGTGTCCTT 61.637 66.667 4.53 0.00 0.00 3.36
2329 4783 4.954118 TGTGGGCCTCGGTGTCCT 62.954 66.667 4.53 0.00 0.00 3.85
2330 4784 3.901797 CTTGTGGGCCTCGGTGTCC 62.902 68.421 4.53 0.00 0.00 4.02
2331 4785 2.185310 ATCTTGTGGGCCTCGGTGTC 62.185 60.000 4.53 0.00 0.00 3.67
2332 4786 1.779061 AATCTTGTGGGCCTCGGTGT 61.779 55.000 4.53 0.00 0.00 4.16
2333 4787 0.251916 TAATCTTGTGGGCCTCGGTG 59.748 55.000 4.53 0.00 0.00 4.94
2334 4788 1.134098 CATAATCTTGTGGGCCTCGGT 60.134 52.381 4.53 0.00 0.00 4.69
2335 4789 1.140852 TCATAATCTTGTGGGCCTCGG 59.859 52.381 4.53 0.00 0.00 4.63
2336 4790 2.103094 TCTCATAATCTTGTGGGCCTCG 59.897 50.000 4.53 0.00 0.00 4.63
2337 4791 3.389329 TCTCTCATAATCTTGTGGGCCTC 59.611 47.826 4.53 0.49 0.00 4.70
2338 4792 3.387962 TCTCTCATAATCTTGTGGGCCT 58.612 45.455 4.53 0.00 0.00 5.19
2339 4793 3.135530 ACTCTCTCATAATCTTGTGGGCC 59.864 47.826 0.00 0.00 0.00 5.80
2340 4794 4.141846 TGACTCTCTCATAATCTTGTGGGC 60.142 45.833 0.00 0.00 0.00 5.36
2341 4795 5.355596 GTGACTCTCTCATAATCTTGTGGG 58.644 45.833 0.00 0.00 0.00 4.61
2342 4796 5.355596 GGTGACTCTCTCATAATCTTGTGG 58.644 45.833 0.00 0.00 0.00 4.17
2343 4797 5.039984 CGGTGACTCTCTCATAATCTTGTG 58.960 45.833 0.00 0.00 0.00 3.33
2344 4798 4.098654 CCGGTGACTCTCTCATAATCTTGT 59.901 45.833 0.00 0.00 0.00 3.16
2345 4799 4.615949 CCGGTGACTCTCTCATAATCTTG 58.384 47.826 0.00 0.00 0.00 3.02
2346 4800 3.068873 GCCGGTGACTCTCTCATAATCTT 59.931 47.826 1.90 0.00 0.00 2.40
2347 4801 2.625790 GCCGGTGACTCTCTCATAATCT 59.374 50.000 1.90 0.00 0.00 2.40
2348 4802 2.625790 AGCCGGTGACTCTCTCATAATC 59.374 50.000 1.90 0.00 0.00 1.75
2349 4803 2.363680 CAGCCGGTGACTCTCTCATAAT 59.636 50.000 1.90 0.00 0.00 1.28
2350 4804 1.751351 CAGCCGGTGACTCTCTCATAA 59.249 52.381 1.90 0.00 0.00 1.90
2351 4805 1.064685 TCAGCCGGTGACTCTCTCATA 60.065 52.381 1.90 0.00 0.00 2.15
2352 4806 0.323816 TCAGCCGGTGACTCTCTCAT 60.324 55.000 1.90 0.00 0.00 2.90
2353 4807 0.962855 CTCAGCCGGTGACTCTCTCA 60.963 60.000 1.90 0.00 0.00 3.27
2354 4808 0.678366 TCTCAGCCGGTGACTCTCTC 60.678 60.000 1.90 0.00 0.00 3.20
2355 4809 0.033601 ATCTCAGCCGGTGACTCTCT 60.034 55.000 1.90 0.00 0.00 3.10
2356 4810 1.681538 TATCTCAGCCGGTGACTCTC 58.318 55.000 1.90 0.00 0.00 3.20
2357 4811 2.158534 AGATATCTCAGCCGGTGACTCT 60.159 50.000 1.90 0.97 0.00 3.24
2358 4812 2.235016 AGATATCTCAGCCGGTGACTC 58.765 52.381 1.90 0.00 0.00 3.36
2359 4813 2.373335 AGATATCTCAGCCGGTGACT 57.627 50.000 1.90 0.00 0.00 3.41
2360 4814 2.095668 CGTAGATATCTCAGCCGGTGAC 60.096 54.545 8.95 0.00 0.00 3.67
2361 4815 2.152016 CGTAGATATCTCAGCCGGTGA 58.848 52.381 8.95 4.87 0.00 4.02
2362 4816 1.401670 GCGTAGATATCTCAGCCGGTG 60.402 57.143 8.95 0.00 0.00 4.94
2363 4817 0.882474 GCGTAGATATCTCAGCCGGT 59.118 55.000 8.95 0.00 0.00 5.28
2364 4818 0.171455 GGCGTAGATATCTCAGCCGG 59.829 60.000 25.93 0.00 38.32 6.13
2365 4819 0.171455 GGGCGTAGATATCTCAGCCG 59.829 60.000 29.61 19.98 44.41 5.52
2366 4820 1.551452 AGGGCGTAGATATCTCAGCC 58.449 55.000 29.34 29.34 43.45 4.85
2367 4821 3.349022 AGTAGGGCGTAGATATCTCAGC 58.651 50.000 18.72 18.72 0.00 4.26
2368 4822 5.736813 ACTAGTAGGGCGTAGATATCTCAG 58.263 45.833 8.95 5.77 0.00 3.35
2369 4823 5.247792 TGACTAGTAGGGCGTAGATATCTCA 59.752 44.000 8.95 0.00 0.00 3.27
2370 4824 5.581874 GTGACTAGTAGGGCGTAGATATCTC 59.418 48.000 8.95 0.43 0.00 2.75
2371 4825 5.248934 AGTGACTAGTAGGGCGTAGATATCT 59.751 44.000 10.73 10.73 0.00 1.98
2372 4826 5.490159 AGTGACTAGTAGGGCGTAGATATC 58.510 45.833 0.00 0.00 0.00 1.63
2373 4827 5.490159 GAGTGACTAGTAGGGCGTAGATAT 58.510 45.833 0.00 0.00 0.00 1.63
2374 4828 4.560311 CGAGTGACTAGTAGGGCGTAGATA 60.560 50.000 0.00 0.00 0.00 1.98
2375 4829 3.742385 GAGTGACTAGTAGGGCGTAGAT 58.258 50.000 0.00 0.00 0.00 1.98
2376 4830 2.482664 CGAGTGACTAGTAGGGCGTAGA 60.483 54.545 0.00 0.00 0.00 2.59
2377 4831 1.865970 CGAGTGACTAGTAGGGCGTAG 59.134 57.143 0.00 0.00 0.00 3.51
2378 4832 1.482182 TCGAGTGACTAGTAGGGCGTA 59.518 52.381 0.00 0.00 0.00 4.42
2379 4833 0.251354 TCGAGTGACTAGTAGGGCGT 59.749 55.000 0.00 0.00 0.00 5.68
2380 4834 0.656785 GTCGAGTGACTAGTAGGGCG 59.343 60.000 0.00 0.00 42.08 6.13
2381 4835 1.401199 GTGTCGAGTGACTAGTAGGGC 59.599 57.143 0.00 0.00 45.70 5.19
2382 4836 2.678836 CTGTGTCGAGTGACTAGTAGGG 59.321 54.545 0.00 0.00 45.70 3.53
2383 4837 2.678836 CCTGTGTCGAGTGACTAGTAGG 59.321 54.545 0.00 0.00 45.70 3.18
2384 4838 3.336468 ACCTGTGTCGAGTGACTAGTAG 58.664 50.000 0.00 0.00 45.70 2.57
2385 4839 3.413846 ACCTGTGTCGAGTGACTAGTA 57.586 47.619 0.00 0.00 45.70 1.82
2386 4840 2.273538 ACCTGTGTCGAGTGACTAGT 57.726 50.000 0.00 0.00 45.70 2.57
2387 4841 2.095161 GGAACCTGTGTCGAGTGACTAG 60.095 54.545 0.00 0.00 45.70 2.57
2388 4842 1.884579 GGAACCTGTGTCGAGTGACTA 59.115 52.381 0.00 0.00 45.70 2.59
2389 4843 0.674534 GGAACCTGTGTCGAGTGACT 59.325 55.000 0.00 0.00 45.70 3.41
2390 4844 0.387929 TGGAACCTGTGTCGAGTGAC 59.612 55.000 0.00 0.00 45.71 3.67
2391 4845 0.387929 GTGGAACCTGTGTCGAGTGA 59.612 55.000 0.00 0.00 0.00 3.41
2392 4846 2.900528 GTGGAACCTGTGTCGAGTG 58.099 57.895 0.00 0.00 0.00 3.51
2411 4865 2.350522 CAGTGATCAAGACCCTTTCGG 58.649 52.381 0.00 0.00 37.81 4.30
2412 4866 2.028112 TCCAGTGATCAAGACCCTTTCG 60.028 50.000 0.00 0.00 0.00 3.46
2413 4867 3.339141 GTCCAGTGATCAAGACCCTTTC 58.661 50.000 0.00 0.00 0.00 2.62
2414 4868 2.040412 GGTCCAGTGATCAAGACCCTTT 59.960 50.000 21.98 0.00 42.49 3.11
2415 4869 1.630878 GGTCCAGTGATCAAGACCCTT 59.369 52.381 21.98 0.00 42.49 3.95
2416 4870 1.280457 GGTCCAGTGATCAAGACCCT 58.720 55.000 21.98 3.71 42.49 4.34
2417 4871 0.108138 CGGTCCAGTGATCAAGACCC 60.108 60.000 24.58 13.48 44.94 4.46
2418 4872 0.608640 ACGGTCCAGTGATCAAGACC 59.391 55.000 22.38 22.38 44.42 3.85
2419 4873 1.404315 GGACGGTCCAGTGATCAAGAC 60.404 57.143 22.10 5.10 36.28 3.01
2420 4874 0.895530 GGACGGTCCAGTGATCAAGA 59.104 55.000 22.10 0.00 36.28 3.02
2421 4875 0.108138 GGGACGGTCCAGTGATCAAG 60.108 60.000 27.32 0.00 38.64 3.02
2422 4876 0.834261 TGGGACGGTCCAGTGATCAA 60.834 55.000 27.32 0.93 38.64 2.57
2423 4877 0.834261 TTGGGACGGTCCAGTGATCA 60.834 55.000 27.32 12.80 38.64 2.92
2424 4878 0.541863 ATTGGGACGGTCCAGTGATC 59.458 55.000 27.32 10.34 38.64 2.92
2425 4879 0.991920 AATTGGGACGGTCCAGTGAT 59.008 50.000 27.32 12.55 38.64 3.06
2426 4880 0.323629 GAATTGGGACGGTCCAGTGA 59.676 55.000 27.32 10.87 38.64 3.41
2427 4881 0.036164 TGAATTGGGACGGTCCAGTG 59.964 55.000 27.32 0.00 38.64 3.66
2428 4882 0.036306 GTGAATTGGGACGGTCCAGT 59.964 55.000 27.32 8.33 38.64 4.00
2429 4883 0.324943 AGTGAATTGGGACGGTCCAG 59.675 55.000 27.32 0.00 38.64 3.86
2430 4884 0.323629 GAGTGAATTGGGACGGTCCA 59.676 55.000 27.32 9.57 38.64 4.02
2431 4885 0.739813 CGAGTGAATTGGGACGGTCC 60.740 60.000 19.06 19.06 35.23 4.46
2432 4886 0.739813 CCGAGTGAATTGGGACGGTC 60.740 60.000 0.00 0.00 36.38 4.79
2433 4887 1.189524 TCCGAGTGAATTGGGACGGT 61.190 55.000 0.00 0.00 40.93 4.83
2434 4888 0.460284 CTCCGAGTGAATTGGGACGG 60.460 60.000 0.00 0.00 41.39 4.79
2435 4889 0.246635 ACTCCGAGTGAATTGGGACG 59.753 55.000 0.00 0.00 32.49 4.79
2436 4890 2.418334 GGTACTCCGAGTGAATTGGGAC 60.418 54.545 11.52 0.00 32.49 4.46
2437 4891 1.829222 GGTACTCCGAGTGAATTGGGA 59.171 52.381 11.52 0.00 32.49 4.37
2438 4892 1.553248 TGGTACTCCGAGTGAATTGGG 59.447 52.381 11.52 0.00 36.30 4.12
2439 4893 3.262420 CTTGGTACTCCGAGTGAATTGG 58.738 50.000 11.52 0.00 39.71 3.16
2447 4901 6.033468 CCGAGTGATACTTGGTACTCCGAG 62.033 54.167 7.02 0.00 43.45 4.63
2448 4902 2.941064 CGAGTGATACTTGGTACTCCGA 59.059 50.000 0.00 0.00 36.97 4.55
2449 4903 2.033049 CCGAGTGATACTTGGTACTCCG 59.967 54.545 7.02 0.00 43.45 4.63
2450 4904 3.712091 CCGAGTGATACTTGGTACTCC 57.288 52.381 7.02 0.00 43.45 3.85
2457 4911 2.166459 TCCTGCTTCCGAGTGATACTTG 59.834 50.000 0.00 0.00 0.00 3.16
2458 4912 2.428890 CTCCTGCTTCCGAGTGATACTT 59.571 50.000 0.00 0.00 0.00 2.24
2459 4913 2.028130 CTCCTGCTTCCGAGTGATACT 58.972 52.381 0.00 0.00 0.00 2.12
2460 4914 2.025155 TCTCCTGCTTCCGAGTGATAC 58.975 52.381 0.00 0.00 0.00 2.24
2461 4915 2.025155 GTCTCCTGCTTCCGAGTGATA 58.975 52.381 0.00 0.00 0.00 2.15
2462 4916 0.820871 GTCTCCTGCTTCCGAGTGAT 59.179 55.000 0.00 0.00 0.00 3.06
2463 4917 0.251386 AGTCTCCTGCTTCCGAGTGA 60.251 55.000 0.00 0.00 0.00 3.41
2464 4918 0.605589 AAGTCTCCTGCTTCCGAGTG 59.394 55.000 0.00 0.00 0.00 3.51
2465 4919 2.096248 CTAAGTCTCCTGCTTCCGAGT 58.904 52.381 0.00 0.00 0.00 4.18
2466 4920 2.357637 CTCTAAGTCTCCTGCTTCCGAG 59.642 54.545 0.00 0.00 0.00 4.63
2467 4921 2.291024 ACTCTAAGTCTCCTGCTTCCGA 60.291 50.000 0.00 0.00 0.00 4.55
2468 4922 2.096248 ACTCTAAGTCTCCTGCTTCCG 58.904 52.381 0.00 0.00 0.00 4.30
2469 4923 3.093057 TGACTCTAAGTCTCCTGCTTCC 58.907 50.000 8.44 0.00 45.27 3.46
2470 4924 4.104696 GTGACTCTAAGTCTCCTGCTTC 57.895 50.000 8.44 0.00 45.27 3.86
2477 4931 3.366396 TCCCATGGTGACTCTAAGTCTC 58.634 50.000 11.73 4.89 45.27 3.36
2478 4932 3.474798 TCCCATGGTGACTCTAAGTCT 57.525 47.619 11.73 0.00 45.27 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.