Multiple sequence alignment - TraesCS4B01G029600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G029600 chr4B 100.000 9897 0 0 1 9897 21927978 21937874 0.000000e+00 18277.0
1 TraesCS4B01G029600 chr4B 82.661 744 80 28 1 714 369268390 369269114 1.830000e-171 614.0
2 TraesCS4B01G029600 chr4B 100.000 57 0 0 698 754 576150298 576150242 1.360000e-18 106.0
3 TraesCS4B01G029600 chr4B 84.071 113 13 3 802 911 21913484 21913594 4.890000e-18 104.0
4 TraesCS4B01G029600 chr4B 92.188 64 5 0 2753 2816 564138818 564138755 3.810000e-14 91.6
5 TraesCS4B01G029600 chr3B 97.911 3351 55 12 2967 6311 618003971 618007312 0.000000e+00 5786.0
6 TraesCS4B01G029600 chr3B 97.828 3361 47 12 2959 6315 825477467 825474129 0.000000e+00 5779.0
7 TraesCS4B01G029600 chr3B 95.413 109 5 0 2480 2588 110638838 110638730 3.670000e-39 174.0
8 TraesCS4B01G029600 chr3B 94.595 111 6 0 2478 2588 113298294 113298404 1.320000e-38 172.0
9 TraesCS4B01G029600 chr4D 95.502 1823 56 11 7205 9012 11864234 11862423 0.000000e+00 2889.0
10 TraesCS4B01G029600 chr4D 85.366 1845 104 62 734 2480 11867808 11866032 0.000000e+00 1759.0
11 TraesCS4B01G029600 chr4D 91.591 773 49 10 9017 9779 11862375 11861609 0.000000e+00 1053.0
12 TraesCS4B01G029600 chr4D 100.000 111 0 0 9787 9897 11861230 11861120 1.300000e-48 206.0
13 TraesCS4B01G029600 chr4D 78.862 246 15 21 6627 6852 11865146 11864918 2.240000e-26 132.0
14 TraesCS4B01G029600 chr4D 90.141 71 7 0 6241 6311 435978283 435978353 1.060000e-14 93.5
15 TraesCS4B01G029600 chr4D 90.141 71 6 1 2688 2757 11865768 11865698 3.810000e-14 91.6
16 TraesCS4B01G029600 chr4D 82.653 98 15 2 6207 6303 108913226 108913322 1.770000e-12 86.1
17 TraesCS4B01G029600 chr4D 75.210 238 15 21 6309 6514 11865526 11865301 1.380000e-08 73.1
18 TraesCS4B01G029600 chr4D 96.774 31 1 0 7102 7132 121073675 121073705 1.800000e-02 52.8
19 TraesCS4B01G029600 chr4D 96.774 31 1 0 7102 7132 316527492 316527522 1.800000e-02 52.8
20 TraesCS4B01G029600 chr4A 94.951 1723 56 13 7134 8831 590658827 590660543 0.000000e+00 2671.0
21 TraesCS4B01G029600 chr4A 86.008 1265 73 51 824 2006 590655716 590656958 0.000000e+00 1260.0
22 TraesCS4B01G029600 chr4A 90.513 780 52 8 9017 9791 590660702 590661464 0.000000e+00 1011.0
23 TraesCS4B01G029600 chr4A 82.208 607 82 19 11 604 678421558 678422151 5.340000e-137 499.0
24 TraesCS4B01G029600 chr4A 86.057 459 26 23 6305 6734 590658070 590658519 9.060000e-125 459.0
25 TraesCS4B01G029600 chr4A 88.010 392 36 7 1 389 692662663 692663046 4.210000e-123 453.0
26 TraesCS4B01G029600 chr4A 89.030 237 20 3 802 1034 590653989 590654223 1.260000e-73 289.0
27 TraesCS4B01G029600 chr4A 87.225 227 12 4 2242 2463 590657624 590657838 9.930000e-60 243.0
28 TraesCS4B01G029600 chr4A 98.182 110 2 0 9787 9896 590661959 590662068 1.010000e-44 193.0
29 TraesCS4B01G029600 chr4A 83.824 204 10 9 8810 9013 590660476 590660656 1.320000e-38 172.0
30 TraesCS4B01G029600 chr4A 89.844 128 12 1 2475 2602 736609581 736609707 7.950000e-36 163.0
31 TraesCS4B01G029600 chr4A 86.885 122 14 2 6187 6307 538898197 538898077 1.730000e-27 135.0
32 TraesCS4B01G029600 chr4A 93.407 91 6 0 2053 2143 590657534 590657624 1.730000e-27 135.0
33 TraesCS4B01G029600 chr4A 85.938 64 7 2 2961 3023 613745681 613745743 6.420000e-07 67.6
34 TraesCS4B01G029600 chr2A 87.973 2037 201 20 2977 4992 603510701 603512714 0.000000e+00 2364.0
35 TraesCS4B01G029600 chr2A 88.356 1168 103 20 4992 6136 603512773 603513930 0.000000e+00 1373.0
36 TraesCS4B01G029600 chr2A 85.692 643 68 14 11 638 420230433 420229800 0.000000e+00 656.0
37 TraesCS4B01G029600 chr2A 89.950 199 14 5 6114 6307 342542717 342542914 1.650000e-62 252.0
38 TraesCS4B01G029600 chr2A 77.381 336 68 6 7325 7656 17870593 17870262 1.010000e-44 193.0
39 TraesCS4B01G029600 chr6D 88.590 1972 169 32 3038 4992 9877110 9875178 0.000000e+00 2344.0
40 TraesCS4B01G029600 chr6D 89.047 1406 115 24 4926 6299 9875190 9873792 0.000000e+00 1707.0
41 TraesCS4B01G029600 chr6D 88.173 1319 108 28 4992 6287 27098575 27099868 0.000000e+00 1528.0
42 TraesCS4B01G029600 chr6D 77.347 1108 150 60 5004 6055 381021460 381020398 6.710000e-156 562.0
43 TraesCS4B01G029600 chr6D 96.629 89 3 0 6215 6303 328743967 328744055 2.230000e-31 148.0
44 TraesCS4B01G029600 chr6D 82.400 125 14 7 6188 6309 353647812 353647931 1.760000e-17 102.0
45 TraesCS4B01G029600 chr6D 88.462 78 8 1 2960 3037 9877210 9877134 1.060000e-14 93.5
46 TraesCS4B01G029600 chr6D 96.774 31 1 0 7105 7135 127440389 127440359 1.800000e-02 52.8
47 TraesCS4B01G029600 chr6B 90.728 1456 110 18 2981 4428 163654414 163655852 0.000000e+00 1917.0
48 TraesCS4B01G029600 chr6B 91.461 1335 81 19 4992 6311 163656799 163658115 0.000000e+00 1803.0
49 TraesCS4B01G029600 chr6B 90.233 1331 91 17 4992 6307 2633972 2635278 0.000000e+00 1701.0
50 TraesCS4B01G029600 chr6B 84.454 1666 197 37 3160 4802 63610307 63608681 0.000000e+00 1585.0
51 TraesCS4B01G029600 chr6B 84.904 1358 139 39 4992 6307 63608329 63606996 0.000000e+00 1312.0
52 TraesCS4B01G029600 chr6B 91.576 641 49 5 4354 4992 163656104 163656741 0.000000e+00 880.0
53 TraesCS4B01G029600 chr6B 85.751 779 74 23 1 752 132889978 132890746 0.000000e+00 789.0
54 TraesCS4B01G029600 chr6B 90.769 130 10 2 2460 2587 41376889 41377018 1.320000e-38 172.0
55 TraesCS4B01G029600 chr6B 93.860 114 6 1 2475 2587 143439916 143439803 4.750000e-38 171.0
56 TraesCS4B01G029600 chr6B 98.246 57 1 0 698 754 589054245 589054301 6.330000e-17 100.0
57 TraesCS4B01G029600 chr6B 91.837 49 4 0 2820 2868 683829108 683829156 1.780000e-07 69.4
58 TraesCS4B01G029600 chr7B 85.065 1848 219 33 3163 4991 643133075 643131266 0.000000e+00 1831.0
59 TraesCS4B01G029600 chr7B 87.673 722 59 12 1 702 664358281 664357570 0.000000e+00 813.0
60 TraesCS4B01G029600 chr7B 83.929 728 78 24 1 703 595277374 595278087 0.000000e+00 660.0
61 TraesCS4B01G029600 chr7B 88.674 362 38 3 1 359 680257000 680257361 1.180000e-118 438.0
62 TraesCS4B01G029600 chr7B 95.161 124 4 2 3004 3127 642562082 642561961 2.820000e-45 195.0
63 TraesCS4B01G029600 chr7B 98.246 57 1 0 698 754 402830816 402830760 6.330000e-17 100.0
64 TraesCS4B01G029600 chr7B 89.744 78 7 1 2739 2816 85838167 85838091 2.270000e-16 99.0
65 TraesCS4B01G029600 chr7B 90.000 70 7 0 2747 2816 417611165 417611234 3.810000e-14 91.6
66 TraesCS4B01G029600 chr7B 81.034 116 6 5 2756 2871 720702621 720702720 2.960000e-10 78.7
67 TraesCS4B01G029600 chr7B 79.825 114 16 7 2956 3066 705733544 705733435 1.070000e-09 76.8
68 TraesCS4B01G029600 chr1D 85.419 1694 196 37 3157 4828 192571706 192573370 0.000000e+00 1712.0
69 TraesCS4B01G029600 chr1D 85.287 1305 129 38 5037 6312 192573390 192574660 0.000000e+00 1288.0
70 TraesCS4B01G029600 chr1D 91.429 140 8 3 3030 3167 491053296 491053433 1.310000e-43 189.0
71 TraesCS4B01G029600 chr1D 80.412 194 28 7 6121 6307 451395679 451395489 1.340000e-28 139.0
72 TraesCS4B01G029600 chr1D 92.857 70 5 0 2747 2816 307346506 307346575 1.760000e-17 102.0
73 TraesCS4B01G029600 chr1D 92.537 67 5 0 6241 6307 451769771 451769837 8.180000e-16 97.1
74 TraesCS4B01G029600 chr1D 96.364 55 2 0 6259 6313 86741473 86741527 3.810000e-14 91.6
75 TraesCS4B01G029600 chr1D 91.045 67 6 0 6241 6307 390433385 390433319 3.810000e-14 91.6
76 TraesCS4B01G029600 chr1D 96.429 56 1 1 6256 6311 452645807 452645753 3.810000e-14 91.6
77 TraesCS4B01G029600 chr1D 100.000 28 0 0 7105 7132 19757085 19757058 1.800000e-02 52.8
78 TraesCS4B01G029600 chr1D 96.774 31 1 0 7102 7132 464557202 464557232 1.800000e-02 52.8
79 TraesCS4B01G029600 chr5D 85.249 1688 211 29 3160 4828 445088412 445086744 0.000000e+00 1703.0
80 TraesCS4B01G029600 chr5D 84.856 1697 193 34 3157 4827 548855677 548857335 0.000000e+00 1652.0
81 TraesCS4B01G029600 chr5D 83.076 1424 172 40 4925 6307 548857590 548858985 0.000000e+00 1230.0
82 TraesCS4B01G029600 chr5D 85.017 1208 129 31 5106 6273 445082147 445080952 0.000000e+00 1181.0
83 TraesCS4B01G029600 chr5D 77.915 1295 233 42 3718 4988 548856334 548857599 0.000000e+00 758.0
84 TraesCS4B01G029600 chr5D 74.795 611 123 23 7325 7921 6822194 6821601 7.680000e-61 246.0
85 TraesCS4B01G029600 chr5D 72.114 875 210 24 7302 8156 44571153 44570293 5.980000e-57 233.0
86 TraesCS4B01G029600 chr5D 86.777 121 16 0 6187 6307 70154317 70154437 1.730000e-27 135.0
87 TraesCS4B01G029600 chr5D 82.836 134 20 2 6170 6303 445306392 445306522 6.280000e-22 117.0
88 TraesCS4B01G029600 chr5D 98.246 57 1 0 698 754 485993496 485993440 6.330000e-17 100.0
89 TraesCS4B01G029600 chr5D 88.571 70 8 0 2747 2816 368299083 368299152 1.770000e-12 86.1
90 TraesCS4B01G029600 chr5D 96.774 31 1 0 7102 7132 135659701 135659731 1.800000e-02 52.8
91 TraesCS4B01G029600 chr2D 89.784 1155 85 17 5169 6307 291951309 291952446 0.000000e+00 1448.0
92 TraesCS4B01G029600 chr2D 87.285 1219 114 15 3035 4244 572898786 572899972 0.000000e+00 1354.0
93 TraesCS4B01G029600 chr2D 87.666 754 83 6 4242 4992 572915095 572915841 0.000000e+00 869.0
94 TraesCS4B01G029600 chr2D 87.278 731 58 13 1 703 499719452 499718729 0.000000e+00 802.0
95 TraesCS4B01G029600 chr2D 81.356 708 74 23 1 699 557170910 557171568 3.170000e-144 523.0
96 TraesCS4B01G029600 chr2D 77.679 336 67 6 7325 7656 15991087 15990756 2.180000e-46 198.0
97 TraesCS4B01G029600 chr2D 87.912 91 9 2 2954 3043 572898683 572898772 1.360000e-18 106.0
98 TraesCS4B01G029600 chr2D 96.774 31 1 0 7020 7050 493074520 493074490 1.800000e-02 52.8
99 TraesCS4B01G029600 chr1B 84.417 1354 140 33 4992 6307 395971115 395969795 0.000000e+00 1266.0
100 TraesCS4B01G029600 chr1B 87.169 717 66 14 1 699 268824404 268825112 0.000000e+00 791.0
101 TraesCS4B01G029600 chr1B 82.689 543 74 16 1 531 417118610 417118076 1.950000e-126 464.0
102 TraesCS4B01G029600 chr1B 100.000 55 0 0 698 752 380445127 380445073 1.760000e-17 102.0
103 TraesCS4B01G029600 chr1B 98.246 57 1 0 698 754 599249095 599249039 6.330000e-17 100.0
104 TraesCS4B01G029600 chr1B 96.552 58 2 0 698 755 188259518 188259575 8.180000e-16 97.1
105 TraesCS4B01G029600 chr1B 100.000 31 0 0 7101 7131 8839710 8839680 3.860000e-04 58.4
106 TraesCS4B01G029600 chrUn 87.862 725 57 16 1 703 28751079 28750364 0.000000e+00 822.0
107 TraesCS4B01G029600 chrUn 93.913 115 7 0 2473 2587 231397063 231397177 3.670000e-39 174.0
108 TraesCS4B01G029600 chrUn 95.082 61 3 0 6257 6317 115116293 115116353 8.180000e-16 97.1
109 TraesCS4B01G029600 chrUn 92.537 67 4 1 6242 6307 34176721 34176655 2.940000e-15 95.3
110 TraesCS4B01G029600 chrUn 93.220 59 4 0 2753 2811 43574518 43574576 4.920000e-13 87.9
111 TraesCS4B01G029600 chrUn 95.918 49 2 0 6259 6307 34174807 34174759 8.240000e-11 80.5
112 TraesCS4B01G029600 chrUn 97.727 44 1 0 6259 6302 329903647 329903690 1.070000e-09 76.8
113 TraesCS4B01G029600 chrUn 93.878 49 2 1 6259 6307 333485676 333485629 1.380000e-08 73.1
114 TraesCS4B01G029600 chrUn 93.878 49 2 1 6259 6307 333488444 333488397 1.380000e-08 73.1
115 TraesCS4B01G029600 chrUn 91.071 56 2 2 6254 6307 381043341 381043395 1.380000e-08 73.1
116 TraesCS4B01G029600 chr2B 86.602 724 68 11 1 703 495928652 495927937 0.000000e+00 773.0
117 TraesCS4B01G029600 chr2B 86.464 724 66 16 1 703 444527219 444526507 0.000000e+00 765.0
118 TraesCS4B01G029600 chr2B 86.307 723 69 12 1 703 602770394 602769682 0.000000e+00 760.0
119 TraesCS4B01G029600 chr2B 85.086 523 63 12 5 520 120233187 120232673 4.100000e-143 520.0
120 TraesCS4B01G029600 chr2B 86.996 446 48 6 260 703 653902896 653903333 2.480000e-135 494.0
121 TraesCS4B01G029600 chr2B 73.118 558 143 6 7325 7880 28094834 28094282 1.010000e-44 193.0
122 TraesCS4B01G029600 chr2B 77.850 307 62 5 7325 7628 28174997 28174694 1.700000e-42 185.0
123 TraesCS4B01G029600 chr2B 93.913 115 7 0 2473 2587 788392338 788392452 3.670000e-39 174.0
124 TraesCS4B01G029600 chr2B 93.043 115 8 0 2473 2587 788276179 788276065 1.710000e-37 169.0
125 TraesCS4B01G029600 chr2B 93.043 115 8 0 2473 2587 788293475 788293361 1.710000e-37 169.0
126 TraesCS4B01G029600 chr2B 93.694 111 7 0 2478 2588 765483991 765483881 6.150000e-37 167.0
127 TraesCS4B01G029600 chr2B 98.246 57 1 0 698 754 772028587 772028531 6.330000e-17 100.0
128 TraesCS4B01G029600 chr2B 93.846 65 3 1 698 762 158006891 158006954 8.180000e-16 97.1
129 TraesCS4B01G029600 chr2B 86.275 51 7 0 2820 2870 82295910 82295860 1.000000e-03 56.5
130 TraesCS4B01G029600 chr2B 96.875 32 1 0 7101 7132 66759629 66759598 5.000000e-03 54.7
131 TraesCS4B01G029600 chr2B 94.118 34 2 0 7105 7138 218097029 218096996 1.800000e-02 52.8
132 TraesCS4B01G029600 chr7A 87.725 668 73 8 4325 4988 626954031 626953369 0.000000e+00 771.0
133 TraesCS4B01G029600 chr7A 90.400 125 8 4 2470 2594 15276651 15276531 2.860000e-35 161.0
134 TraesCS4B01G029600 chr7A 77.236 123 15 6 2747 2869 552573243 552573134 1.070000e-04 60.2
135 TraesCS4B01G029600 chr7D 78.217 1088 158 47 4992 6022 596076282 596075217 3.040000e-174 623.0
136 TraesCS4B01G029600 chr6A 82.062 747 94 20 4992 5714 581503336 581504066 1.420000e-167 601.0
137 TraesCS4B01G029600 chr6A 79.791 287 33 9 5712 5996 581714243 581714506 1.700000e-42 185.0
138 TraesCS4B01G029600 chr6A 100.000 31 0 0 7101 7131 555674842 555674872 3.860000e-04 58.4
139 TraesCS4B01G029600 chr5A 73.613 811 175 32 7302 8091 3087220 3088012 9.790000e-70 276.0
140 TraesCS4B01G029600 chr5A 73.159 611 148 15 7325 7927 34982411 34981809 1.300000e-48 206.0
141 TraesCS4B01G029600 chr5A 81.915 188 34 0 1334 1521 3086898 3087085 1.030000e-34 159.0
142 TraesCS4B01G029600 chr5A 83.529 85 12 2 2734 2816 674658564 674658648 2.960000e-10 78.7
143 TraesCS4B01G029600 chr5A 100.000 29 0 0 1171 1199 476836800 476836828 5.000000e-03 54.7
144 TraesCS4B01G029600 chr5A 92.105 38 3 0 7102 7139 662667841 662667878 5.000000e-03 54.7
145 TraesCS4B01G029600 chr5A 100.000 28 0 0 2789 2816 536769641 536769668 1.800000e-02 52.8
146 TraesCS4B01G029600 chr5B 72.783 812 181 28 7302 8090 44140624 44141418 1.280000e-58 239.0
147 TraesCS4B01G029600 chr5B 73.734 632 139 23 7302 7921 862366 861750 1.290000e-53 222.0
148 TraesCS4B01G029600 chr5B 94.595 111 6 0 2480 2590 464358739 464358849 1.320000e-38 172.0
149 TraesCS4B01G029600 chr5B 90.400 125 10 2 2476 2600 224628391 224628513 7.950000e-36 163.0
150 TraesCS4B01G029600 chr5B 80.208 192 34 3 1332 1521 862690 862501 3.730000e-29 141.0
151 TraesCS4B01G029600 chr5B 89.041 73 6 1 2746 2816 707443234 707443306 1.370000e-13 89.8
152 TraesCS4B01G029600 chr5B 92.063 63 3 2 2957 3017 507996626 507996564 4.920000e-13 87.9
153 TraesCS4B01G029600 chr5B 89.655 58 6 0 2815 2872 28370561 28370504 3.830000e-09 75.0
154 TraesCS4B01G029600 chr5B 94.286 35 1 1 7102 7136 82456949 82456982 1.800000e-02 52.8
155 TraesCS4B01G029600 chr1A 96.262 107 4 0 2480 2586 301201133 301201027 1.020000e-39 176.0
156 TraesCS4B01G029600 chr1A 89.333 75 8 0 2740 2814 11227959 11228033 2.940000e-15 95.3
157 TraesCS4B01G029600 chr1A 94.118 34 2 0 7105 7138 410396087 410396054 1.800000e-02 52.8
158 TraesCS4B01G029600 chr3A 79.058 191 35 3 6120 6305 628226243 628226433 1.040000e-24 126.0
159 TraesCS4B01G029600 chr3A 87.500 56 6 1 2816 2871 701369839 701369785 8.300000e-06 63.9
160 TraesCS4B01G029600 chr3A 100.000 30 0 0 7102 7131 481075513 481075484 1.000000e-03 56.5
161 TraesCS4B01G029600 chr3A 96.875 32 1 0 7101 7132 195872804 195872773 5.000000e-03 54.7
162 TraesCS4B01G029600 chr3D 90.526 95 8 1 6217 6311 354325128 354325221 3.750000e-24 124.0
163 TraesCS4B01G029600 chr3D 100.000 30 0 0 7106 7135 578283395 578283424 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G029600 chr4B 21927978 21937874 9896 False 18277.000000 18277 100.000000 1 9897 1 chr4B.!!$F2 9896
1 TraesCS4B01G029600 chr4B 369268390 369269114 724 False 614.000000 614 82.661000 1 714 1 chr4B.!!$F3 713
2 TraesCS4B01G029600 chr3B 618003971 618007312 3341 False 5786.000000 5786 97.911000 2967 6311 1 chr3B.!!$F2 3344
3 TraesCS4B01G029600 chr3B 825474129 825477467 3338 True 5779.000000 5779 97.828000 2959 6315 1 chr3B.!!$R2 3356
4 TraesCS4B01G029600 chr4D 11861120 11867808 6688 True 886.242857 2889 88.096000 734 9897 7 chr4D.!!$R1 9163
5 TraesCS4B01G029600 chr4A 590653989 590662068 8079 False 714.777778 2671 89.910778 802 9896 9 chr4A.!!$F5 9094
6 TraesCS4B01G029600 chr4A 678421558 678422151 593 False 499.000000 499 82.208000 11 604 1 chr4A.!!$F2 593
7 TraesCS4B01G029600 chr2A 603510701 603513930 3229 False 1868.500000 2364 88.164500 2977 6136 2 chr2A.!!$F2 3159
8 TraesCS4B01G029600 chr2A 420229800 420230433 633 True 656.000000 656 85.692000 11 638 1 chr2A.!!$R2 627
9 TraesCS4B01G029600 chr6D 27098575 27099868 1293 False 1528.000000 1528 88.173000 4992 6287 1 chr6D.!!$F1 1295
10 TraesCS4B01G029600 chr6D 9873792 9877210 3418 True 1381.500000 2344 88.699667 2960 6299 3 chr6D.!!$R3 3339
11 TraesCS4B01G029600 chr6D 381020398 381021460 1062 True 562.000000 562 77.347000 5004 6055 1 chr6D.!!$R2 1051
12 TraesCS4B01G029600 chr6B 2633972 2635278 1306 False 1701.000000 1701 90.233000 4992 6307 1 chr6B.!!$F1 1315
13 TraesCS4B01G029600 chr6B 163654414 163658115 3701 False 1533.333333 1917 91.255000 2981 6311 3 chr6B.!!$F6 3330
14 TraesCS4B01G029600 chr6B 63606996 63610307 3311 True 1448.500000 1585 84.679000 3160 6307 2 chr6B.!!$R2 3147
15 TraesCS4B01G029600 chr6B 132889978 132890746 768 False 789.000000 789 85.751000 1 752 1 chr6B.!!$F3 751
16 TraesCS4B01G029600 chr7B 643131266 643133075 1809 True 1831.000000 1831 85.065000 3163 4991 1 chr7B.!!$R4 1828
17 TraesCS4B01G029600 chr7B 664357570 664358281 711 True 813.000000 813 87.673000 1 702 1 chr7B.!!$R5 701
18 TraesCS4B01G029600 chr7B 595277374 595278087 713 False 660.000000 660 83.929000 1 703 1 chr7B.!!$F2 702
19 TraesCS4B01G029600 chr1D 192571706 192574660 2954 False 1500.000000 1712 85.353000 3157 6312 2 chr1D.!!$F6 3155
20 TraesCS4B01G029600 chr5D 445086744 445088412 1668 True 1703.000000 1703 85.249000 3160 4828 1 chr5D.!!$R4 1668
21 TraesCS4B01G029600 chr5D 548855677 548858985 3308 False 1213.333333 1652 81.949000 3157 6307 3 chr5D.!!$F5 3150
22 TraesCS4B01G029600 chr5D 445080952 445082147 1195 True 1181.000000 1181 85.017000 5106 6273 1 chr5D.!!$R3 1167
23 TraesCS4B01G029600 chr5D 6821601 6822194 593 True 246.000000 246 74.795000 7325 7921 1 chr5D.!!$R1 596
24 TraesCS4B01G029600 chr5D 44570293 44571153 860 True 233.000000 233 72.114000 7302 8156 1 chr5D.!!$R2 854
25 TraesCS4B01G029600 chr2D 291951309 291952446 1137 False 1448.000000 1448 89.784000 5169 6307 1 chr2D.!!$F1 1138
26 TraesCS4B01G029600 chr2D 572915095 572915841 746 False 869.000000 869 87.666000 4242 4992 1 chr2D.!!$F3 750
27 TraesCS4B01G029600 chr2D 499718729 499719452 723 True 802.000000 802 87.278000 1 703 1 chr2D.!!$R3 702
28 TraesCS4B01G029600 chr2D 572898683 572899972 1289 False 730.000000 1354 87.598500 2954 4244 2 chr2D.!!$F4 1290
29 TraesCS4B01G029600 chr2D 557170910 557171568 658 False 523.000000 523 81.356000 1 699 1 chr2D.!!$F2 698
30 TraesCS4B01G029600 chr1B 395969795 395971115 1320 True 1266.000000 1266 84.417000 4992 6307 1 chr1B.!!$R3 1315
31 TraesCS4B01G029600 chr1B 268824404 268825112 708 False 791.000000 791 87.169000 1 699 1 chr1B.!!$F2 698
32 TraesCS4B01G029600 chr1B 417118076 417118610 534 True 464.000000 464 82.689000 1 531 1 chr1B.!!$R4 530
33 TraesCS4B01G029600 chrUn 28750364 28751079 715 True 822.000000 822 87.862000 1 703 1 chrUn.!!$R1 702
34 TraesCS4B01G029600 chr2B 495927937 495928652 715 True 773.000000 773 86.602000 1 703 1 chr2B.!!$R8 702
35 TraesCS4B01G029600 chr2B 444526507 444527219 712 True 765.000000 765 86.464000 1 703 1 chr2B.!!$R7 702
36 TraesCS4B01G029600 chr2B 602769682 602770394 712 True 760.000000 760 86.307000 1 703 1 chr2B.!!$R9 702
37 TraesCS4B01G029600 chr2B 120232673 120233187 514 True 520.000000 520 85.086000 5 520 1 chr2B.!!$R5 515
38 TraesCS4B01G029600 chr7A 626953369 626954031 662 True 771.000000 771 87.725000 4325 4988 1 chr7A.!!$R3 663
39 TraesCS4B01G029600 chr7D 596075217 596076282 1065 True 623.000000 623 78.217000 4992 6022 1 chr7D.!!$R1 1030
40 TraesCS4B01G029600 chr6A 581503336 581504066 730 False 601.000000 601 82.062000 4992 5714 1 chr6A.!!$F2 722
41 TraesCS4B01G029600 chr5A 3086898 3088012 1114 False 217.500000 276 77.764000 1334 8091 2 chr5A.!!$F5 6757
42 TraesCS4B01G029600 chr5A 34981809 34982411 602 True 206.000000 206 73.159000 7325 7927 1 chr5A.!!$R1 602
43 TraesCS4B01G029600 chr5B 44140624 44141418 794 False 239.000000 239 72.783000 7302 8090 1 chr5B.!!$F1 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 911 0.606401 GCTCTAGCTGTTGGGCACAA 60.606 55.0 0.00 0.00 33.87 3.33 F
1645 3502 0.032130 CGCGCCCTGTATGTCTGTAT 59.968 55.0 0.00 0.00 0.00 2.29 F
2684 5165 0.041312 CGCCCAGTTTGTTCAAGACG 60.041 55.0 0.00 0.00 0.00 4.18 F
2988 5517 0.035439 GGGTCCGTCCATGTCACATT 60.035 55.0 0.00 0.00 38.11 2.71 F
4107 6745 1.111277 AAGTTTGTCCCCAGTTGCAC 58.889 50.0 0.00 0.00 0.00 4.57 F
4357 7323 1.188871 GGAAAAATCACGGGCCCCAA 61.189 55.0 18.66 1.09 0.00 4.12 F
6337 9671 1.145803 GTTTGGCAGAGGACGTGTAC 58.854 55.0 0.00 0.00 0.00 2.90 F
6722 10152 0.249489 ACTGACAACGACAGCCACTC 60.249 55.0 0.00 0.00 38.74 3.51 F
7055 10542 0.316442 CATCAATCGATGCACACGGC 60.316 55.0 13.67 0.00 42.54 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2240 4680 0.034059 CAGGCCCCTAAGCATACTCG 59.966 60.000 0.00 0.00 0.00 4.18 R
2897 5423 0.030235 CCATCATTGCGTGGCTGATG 59.970 55.000 10.96 10.96 43.71 3.07 R
4038 6673 0.736325 CTCGCAACTAGGGTCCAACG 60.736 60.000 0.00 0.00 0.00 4.10 R
4150 6788 1.006102 CACCCTCGACTCGCAACTT 60.006 57.895 0.00 0.00 0.00 2.66 R
5579 8806 2.801679 TCGTTTCGGTTTCGTTTGCTAT 59.198 40.909 0.00 0.00 37.69 2.97 R
6344 9678 1.601903 CGCAACTAGTTGGCAGACAAA 59.398 47.619 31.42 0.00 41.58 2.83 R
7196 11178 0.033796 ACATGCCCTGGGATGAACAG 60.034 55.000 22.53 0.49 45.01 3.16 R
7724 11723 1.675641 AAGCTTGGTGACGATGGCC 60.676 57.895 0.00 0.00 0.00 5.36 R
8989 13014 1.407989 GGCAGAAGGTTAGCAGCTCAT 60.408 52.381 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 145 1.302511 GATGGACCAACACGGCAGT 60.303 57.895 0.00 0.00 39.03 4.40
156 164 3.254657 CAGTCAATATCTCCTCCTCGTCC 59.745 52.174 0.00 0.00 0.00 4.79
158 166 3.892588 GTCAATATCTCCTCCTCGTCCTT 59.107 47.826 0.00 0.00 0.00 3.36
175 183 3.087031 TCCTTAGAGGACGAATCGTTGT 58.913 45.455 10.45 0.00 40.06 3.32
187 195 1.076332 ATCGTTGTAGTCGCAAAGGC 58.924 50.000 0.00 0.00 0.00 4.35
297 342 2.266055 GCACGGACCAGCTAGCTT 59.734 61.111 16.46 0.21 0.00 3.74
340 406 3.147595 CGGTGAGGATCTGGCCGA 61.148 66.667 0.00 0.00 43.94 5.54
516 588 1.582610 GAGTCGCCGGCAAAAATGGA 61.583 55.000 28.98 10.87 0.00 3.41
608 693 4.523282 GGGCCTGGGGGAGGAGAT 62.523 72.222 0.84 0.00 46.33 2.75
612 697 2.367377 CTGGGGGAGGAGATGGCA 60.367 66.667 0.00 0.00 0.00 4.92
677 766 2.026915 GCTCAAAAATGGGCCAGGAATT 60.027 45.455 13.78 0.00 0.00 2.17
699 788 4.753877 GCCCGCGAACGAAAAGCC 62.754 66.667 8.23 0.00 43.93 4.35
704 793 2.858158 CGAACGAAAAGCCGACCC 59.142 61.111 0.00 0.00 0.00 4.46
705 794 1.957186 CGAACGAAAAGCCGACCCA 60.957 57.895 0.00 0.00 0.00 4.51
706 795 1.500512 CGAACGAAAAGCCGACCCAA 61.501 55.000 0.00 0.00 0.00 4.12
707 796 0.664224 GAACGAAAAGCCGACCCAAA 59.336 50.000 0.00 0.00 0.00 3.28
709 798 1.082366 CGAAAAGCCGACCCAAACG 60.082 57.895 0.00 0.00 0.00 3.60
762 855 7.870954 CCGTTGGAGTTGCTCTAATGTTATATA 59.129 37.037 11.58 0.00 36.62 0.86
818 911 0.606401 GCTCTAGCTGTTGGGCACAA 60.606 55.000 0.00 0.00 33.87 3.33
819 912 1.952367 GCTCTAGCTGTTGGGCACAAT 60.952 52.381 3.81 0.00 37.19 2.71
820 913 1.741706 CTCTAGCTGTTGGGCACAATG 59.258 52.381 3.81 2.05 39.13 2.82
853 946 4.956700 TCGGATAACAAAGGAGAGAGTCAT 59.043 41.667 0.00 0.00 0.00 3.06
862 955 3.127250 AGGAGAGAGTCATACTCCCTGA 58.873 50.000 20.00 0.00 46.18 3.86
866 959 2.360801 GAGAGTCATACTCCCTGACAGC 59.639 54.545 3.49 0.00 46.18 4.40
867 960 2.103373 GAGTCATACTCCCTGACAGCA 58.897 52.381 0.00 0.00 44.37 4.41
868 961 2.697751 GAGTCATACTCCCTGACAGCAT 59.302 50.000 0.00 0.00 44.37 3.79
871 964 1.135094 ATACTCCCTGACAGCATGGG 58.865 55.000 0.00 0.00 43.62 4.00
981 2789 4.710375 TCCCTTTGTATAAAGAGAGCGAGT 59.290 41.667 13.07 0.00 44.87 4.18
992 2800 0.754957 AGAGCGAGTAGGCAGAGCAT 60.755 55.000 0.00 0.00 34.64 3.79
1008 2816 2.172293 GAGCATTCCCCTCAGTCTCATT 59.828 50.000 0.00 0.00 0.00 2.57
1061 2883 3.717294 GGAGAAAGGGGCGAGGCA 61.717 66.667 0.00 0.00 0.00 4.75
1270 3105 2.364324 TGCCCTTCATCATAGGTACGTC 59.636 50.000 0.00 0.00 0.00 4.34
1271 3106 2.364324 GCCCTTCATCATAGGTACGTCA 59.636 50.000 0.00 0.00 0.00 4.35
1272 3107 3.181469 GCCCTTCATCATAGGTACGTCAA 60.181 47.826 0.00 0.00 0.00 3.18
1273 3108 4.621991 CCCTTCATCATAGGTACGTCAAG 58.378 47.826 0.00 0.00 0.00 3.02
1274 3109 4.099573 CCCTTCATCATAGGTACGTCAAGT 59.900 45.833 0.00 0.00 0.00 3.16
1275 3110 5.301045 CCCTTCATCATAGGTACGTCAAGTA 59.699 44.000 0.00 0.00 0.00 2.24
1291 3126 0.113776 AGTACCCAGGAAGTGGTCGA 59.886 55.000 0.00 0.00 46.37 4.20
1294 3129 2.432628 CCAGGAAGTGGTCGACGC 60.433 66.667 9.92 5.02 42.17 5.19
1295 3130 2.805353 CAGGAAGTGGTCGACGCG 60.805 66.667 9.92 3.53 33.90 6.01
1297 3132 3.103911 GGAAGTGGTCGACGCGTG 61.104 66.667 20.70 9.70 33.90 5.34
1298 3133 2.354305 GAAGTGGTCGACGCGTGT 60.354 61.111 20.70 0.00 33.90 4.49
1570 3427 3.866582 CATCGTGAGCCCCTCCCC 61.867 72.222 0.00 0.00 0.00 4.81
1590 3447 0.933700 CTCCCCTCTCCTCTCCTCTT 59.066 60.000 0.00 0.00 0.00 2.85
1617 3474 0.695803 ACTCCCACCAGATCCATCCC 60.696 60.000 0.00 0.00 0.00 3.85
1623 3480 1.073444 CACCAGATCCATCCCATCCAG 59.927 57.143 0.00 0.00 0.00 3.86
1629 3486 3.274586 CATCCCATCCAGCACGCG 61.275 66.667 3.53 3.53 0.00 6.01
1641 3498 2.184322 CACGCGCCCTGTATGTCT 59.816 61.111 5.73 0.00 0.00 3.41
1642 3499 2.167219 CACGCGCCCTGTATGTCTG 61.167 63.158 5.73 0.00 0.00 3.51
1644 3501 1.317431 ACGCGCCCTGTATGTCTGTA 61.317 55.000 5.73 0.00 0.00 2.74
1645 3502 0.032130 CGCGCCCTGTATGTCTGTAT 59.968 55.000 0.00 0.00 0.00 2.29
1646 3503 1.784525 GCGCCCTGTATGTCTGTATC 58.215 55.000 0.00 0.00 0.00 2.24
1663 3524 0.665835 ATCGTAGCCTCTTCTCGCTG 59.334 55.000 0.00 0.00 36.53 5.18
1664 3525 1.587613 CGTAGCCTCTTCTCGCTGC 60.588 63.158 0.00 0.00 36.53 5.25
1697 3558 2.513666 GCGCCCATGAACCGATGA 60.514 61.111 0.00 0.00 0.00 2.92
1730 3593 1.598130 CCTCCGAATTGGGGATCGC 60.598 63.158 6.66 0.06 43.10 4.58
1796 3660 2.304092 GTTTCCTTTCTCGGGTTGGTT 58.696 47.619 0.00 0.00 0.00 3.67
1813 3677 1.092345 GTTGGGGCTCGAGATTCAGC 61.092 60.000 18.75 8.38 34.65 4.26
1815 3679 1.068921 GGGGCTCGAGATTCAGCTC 59.931 63.158 18.75 0.00 35.13 4.09
1896 3766 4.240103 TGCCGCACTGTGTGAGCT 62.240 61.111 22.05 0.00 36.05 4.09
1972 3856 3.308878 GATCAACCACGTGCGTGCC 62.309 63.158 18.03 2.15 44.16 5.01
2030 3938 5.876651 TGTAGATGTGGATCAGCATTAGT 57.123 39.130 0.00 0.00 34.56 2.24
2031 3939 6.976934 TGTAGATGTGGATCAGCATTAGTA 57.023 37.500 0.00 0.00 34.56 1.82
2032 3940 6.986250 TGTAGATGTGGATCAGCATTAGTAG 58.014 40.000 0.00 0.00 34.56 2.57
2047 4150 7.912250 CAGCATTAGTAGGAAATTTGCAACTAG 59.088 37.037 12.54 0.00 0.00 2.57
2049 4152 7.698130 GCATTAGTAGGAAATTTGCAACTAGTG 59.302 37.037 12.54 14.05 33.09 2.74
2050 4153 7.681939 TTAGTAGGAAATTTGCAACTAGTGG 57.318 36.000 12.54 0.00 0.00 4.00
2051 4154 5.631119 AGTAGGAAATTTGCAACTAGTGGT 58.369 37.500 12.54 0.00 0.00 4.16
2074 4498 0.577269 GAGTGGCGCGCACTAATAAG 59.423 55.000 34.42 0.00 32.33 1.73
2128 4557 5.183713 CAGGCCATTTATTCAGTTGACTTGA 59.816 40.000 5.01 0.00 0.00 3.02
2131 4560 7.067494 AGGCCATTTATTCAGTTGACTTGATAC 59.933 37.037 5.01 0.00 0.00 2.24
2135 4564 9.478019 CATTTATTCAGTTGACTTGATACGTTC 57.522 33.333 0.00 0.00 0.00 3.95
2162 4602 1.134371 GTTGATGAGGAGCTGGTACCC 60.134 57.143 10.07 0.00 0.00 3.69
2181 4621 3.718210 GATCGGGCGGCTCGAGTTT 62.718 63.158 29.84 14.13 40.09 2.66
2183 4623 1.745320 ATCGGGCGGCTCGAGTTTAT 61.745 55.000 29.84 10.46 40.09 1.40
2184 4624 2.237751 CGGGCGGCTCGAGTTTATG 61.238 63.158 19.23 0.90 0.00 1.90
2198 4638 7.279313 GCTCGAGTTTATGGGTAGATTTAAACA 59.721 37.037 15.13 0.00 37.13 2.83
2237 4677 2.624316 TTCTGAGTACGTGTTAGCCG 57.376 50.000 0.00 0.00 0.00 5.52
2238 4678 0.806868 TCTGAGTACGTGTTAGCCGG 59.193 55.000 0.00 0.00 0.00 6.13
2239 4679 0.801067 CTGAGTACGTGTTAGCCGGC 60.801 60.000 21.89 21.89 0.00 6.13
2240 4680 1.517913 GAGTACGTGTTAGCCGGCC 60.518 63.158 26.15 8.84 0.00 6.13
2241 4681 2.882301 GTACGTGTTAGCCGGCCG 60.882 66.667 26.15 21.04 0.00 6.13
2242 4682 3.061231 TACGTGTTAGCCGGCCGA 61.061 61.111 30.73 9.13 0.00 5.54
2243 4683 3.055080 TACGTGTTAGCCGGCCGAG 62.055 63.158 30.73 18.40 0.00 4.63
2244 4684 4.430765 CGTGTTAGCCGGCCGAGT 62.431 66.667 30.73 16.17 0.00 4.18
2260 4700 1.132500 GAGTATGCTTAGGGGCCTGT 58.868 55.000 0.84 0.00 0.00 4.00
2307 4747 1.135333 TGAAAAGGGTGGCGTGAAAAC 59.865 47.619 0.00 0.00 0.00 2.43
2333 4774 2.126346 GCTTTTGAAGCGGCGCAT 60.126 55.556 35.02 24.37 45.74 4.73
2342 4787 3.941836 GCGGCGCATAAGTGAGGC 61.942 66.667 29.21 0.00 45.17 4.70
2367 4812 1.063616 CTCATGATTTGCGCTCCACTG 59.936 52.381 9.73 0.00 0.00 3.66
2377 4823 1.586422 CGCTCCACTGACCCATATTG 58.414 55.000 0.00 0.00 0.00 1.90
2403 4849 3.679025 TGCCCTACGTGTGTTAATTAACG 59.321 43.478 20.51 13.38 39.00 3.18
2423 4869 1.079336 GTGACCACGGGGCTAAGAC 60.079 63.158 1.73 0.00 37.90 3.01
2473 4919 2.704108 GCACATCTATGCTGCTGCT 58.296 52.632 17.00 5.09 42.62 4.24
2474 4920 1.875009 GCACATCTATGCTGCTGCTA 58.125 50.000 17.00 3.79 42.62 3.49
2475 4921 1.530293 GCACATCTATGCTGCTGCTAC 59.470 52.381 17.00 0.00 42.62 3.58
2478 4932 3.986572 CACATCTATGCTGCTGCTACTAC 59.013 47.826 17.00 0.00 40.48 2.73
2487 4941 3.292460 CTGCTGCTACTACTACTCCCTT 58.708 50.000 0.00 0.00 0.00 3.95
2493 4947 3.002144 GCTACTACTACTCCCTTCGTTCG 59.998 52.174 0.00 0.00 0.00 3.95
2494 4948 2.363683 ACTACTACTCCCTTCGTTCGG 58.636 52.381 0.00 0.00 0.00 4.30
2497 4951 2.454538 ACTACTCCCTTCGTTCGGAAT 58.545 47.619 0.00 0.00 33.26 3.01
2501 4955 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
2502 4956 3.260128 ACTCCCTTCGTTCGGAATTACTT 59.740 43.478 0.00 0.00 33.26 2.24
2509 4963 6.366877 CCTTCGTTCGGAATTACTTGTCTTTA 59.633 38.462 0.00 0.00 33.26 1.85
2510 4964 7.095523 CCTTCGTTCGGAATTACTTGTCTTTAA 60.096 37.037 0.00 0.00 33.26 1.52
2512 4966 8.140677 TCGTTCGGAATTACTTGTCTTTAAAA 57.859 30.769 0.00 0.00 0.00 1.52
2513 4967 8.776470 TCGTTCGGAATTACTTGTCTTTAAAAT 58.224 29.630 0.00 0.00 0.00 1.82
2514 4968 8.837059 CGTTCGGAATTACTTGTCTTTAAAATG 58.163 33.333 0.00 0.00 0.00 2.32
2515 4969 9.124807 GTTCGGAATTACTTGTCTTTAAAATGG 57.875 33.333 0.00 0.00 0.00 3.16
2516 4970 8.624367 TCGGAATTACTTGTCTTTAAAATGGA 57.376 30.769 0.00 0.00 0.00 3.41
2518 4972 9.289303 CGGAATTACTTGTCTTTAAAATGGATG 57.711 33.333 0.00 0.00 0.00 3.51
2558 5012 6.044512 ACGTTTAGATACATCCATTTTCGC 57.955 37.500 0.00 0.00 0.00 4.70
2559 5013 5.130519 CGTTTAGATACATCCATTTTCGCG 58.869 41.667 0.00 0.00 0.00 5.87
2561 5015 5.900339 TTAGATACATCCATTTTCGCGAC 57.100 39.130 9.15 0.00 0.00 5.19
2562 5016 3.792401 AGATACATCCATTTTCGCGACA 58.208 40.909 9.15 0.00 0.00 4.35
2563 5017 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
2565 5019 2.151202 ACATCCATTTTCGCGACAAGT 58.849 42.857 9.15 0.00 0.00 3.16
2567 5021 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
2568 5022 4.394920 ACATCCATTTTCGCGACAAGTAAT 59.605 37.500 9.15 0.42 0.00 1.89
2572 5026 4.259734 CCATTTTCGCGACAAGTAATTTCG 59.740 41.667 9.15 4.05 35.82 3.46
2573 5027 4.712191 TTTTCGCGACAAGTAATTTCGA 57.288 36.364 9.15 0.00 34.62 3.71
2574 5028 4.712191 TTTCGCGACAAGTAATTTCGAA 57.288 36.364 9.15 0.00 34.62 3.71
2576 5030 2.089427 TCGCGACAAGTAATTTCGAACG 59.911 45.455 3.71 0.00 34.62 3.95
2577 5031 2.754478 GCGACAAGTAATTTCGAACGG 58.246 47.619 0.00 0.00 34.62 4.44
2578 5032 2.409378 GCGACAAGTAATTTCGAACGGA 59.591 45.455 0.00 0.00 34.62 4.69
2579 5033 3.481467 GCGACAAGTAATTTCGAACGGAG 60.481 47.826 0.00 0.00 34.62 4.63
2580 5034 3.060363 CGACAAGTAATTTCGAACGGAGG 59.940 47.826 0.00 0.00 34.62 4.30
2582 5036 3.007182 ACAAGTAATTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
2583 5037 3.521947 AGTAATTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
2584 5038 2.830321 AGTAATTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
2585 5039 4.019174 AGTAATTTCGAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
2589 5043 2.029838 TCGAACGGAGGGAGTAGTAC 57.970 55.000 0.00 0.00 0.00 2.73
2590 5044 1.556911 TCGAACGGAGGGAGTAGTACT 59.443 52.381 1.37 1.37 0.00 2.73
2591 5045 1.669779 CGAACGGAGGGAGTAGTACTG 59.330 57.143 7.76 0.00 0.00 2.74
2595 5049 3.110705 ACGGAGGGAGTAGTACTGAGTA 58.889 50.000 7.76 0.00 0.00 2.59
2596 5050 3.118445 ACGGAGGGAGTAGTACTGAGTAC 60.118 52.174 14.69 14.69 39.10 2.73
2598 5052 4.343526 CGGAGGGAGTAGTACTGAGTACTA 59.656 50.000 24.44 24.44 45.99 1.82
2609 5063 5.918011 AGTACTGAGTACTAGTATACGTCGC 59.082 44.000 22.80 0.00 45.99 5.19
2610 5064 4.686972 ACTGAGTACTAGTATACGTCGCA 58.313 43.478 5.75 0.13 0.00 5.10
2611 5065 5.111989 ACTGAGTACTAGTATACGTCGCAA 58.888 41.667 5.75 0.00 0.00 4.85
2612 5066 5.757320 ACTGAGTACTAGTATACGTCGCAAT 59.243 40.000 5.75 0.00 0.00 3.56
2615 5069 6.426025 TGAGTACTAGTATACGTCGCAATGAT 59.574 38.462 5.75 0.00 0.00 2.45
2617 5071 7.737395 AGTACTAGTATACGTCGCAATGATAC 58.263 38.462 5.75 0.00 0.00 2.24
2618 5072 5.936054 ACTAGTATACGTCGCAATGATACC 58.064 41.667 0.00 0.00 0.00 2.73
2619 5073 4.841443 AGTATACGTCGCAATGATACCA 57.159 40.909 0.00 0.00 0.00 3.25
2621 5075 5.161358 AGTATACGTCGCAATGATACCATG 58.839 41.667 0.00 0.00 32.36 3.66
2622 5076 1.581934 ACGTCGCAATGATACCATGG 58.418 50.000 11.19 11.19 32.36 3.66
2636 5117 0.758734 CCATGGTAAGATCCGAGCCA 59.241 55.000 2.57 0.00 0.00 4.75
2665 5146 2.800736 GGACGCAATCATGTGCCC 59.199 61.111 2.96 0.00 41.73 5.36
2684 5165 0.041312 CGCCCAGTTTGTTCAAGACG 60.041 55.000 0.00 0.00 0.00 4.18
2745 5271 6.381498 TCCATCATTCCACCAACTAGTAAA 57.619 37.500 0.00 0.00 0.00 2.01
2748 5274 7.990886 TCCATCATTCCACCAACTAGTAAATAC 59.009 37.037 0.00 0.00 0.00 1.89
2749 5275 7.993183 CCATCATTCCACCAACTAGTAAATACT 59.007 37.037 0.00 0.00 40.24 2.12
2756 5282 6.534079 CCACCAACTAGTAAATACTTTCTCCG 59.466 42.308 0.00 0.00 37.73 4.63
2757 5283 7.095270 CACCAACTAGTAAATACTTTCTCCGT 58.905 38.462 0.00 0.00 37.73 4.69
2759 5285 6.755607 CCAACTAGTAAATACTTTCTCCGTCC 59.244 42.308 0.00 0.00 37.73 4.79
2760 5286 6.129053 ACTAGTAAATACTTTCTCCGTCCG 57.871 41.667 0.00 0.00 37.73 4.79
2761 5287 5.882557 ACTAGTAAATACTTTCTCCGTCCGA 59.117 40.000 0.00 0.00 37.73 4.55
2762 5288 5.649782 AGTAAATACTTTCTCCGTCCGAA 57.350 39.130 0.00 0.00 31.13 4.30
2765 5291 6.930722 AGTAAATACTTTCTCCGTCCGAAAAA 59.069 34.615 0.00 0.00 31.13 1.94
2783 5309 2.270352 AAACTTGTCGCTCCAATGGA 57.730 45.000 0.48 0.48 0.00 3.41
2785 5311 1.742761 ACTTGTCGCTCCAATGGATG 58.257 50.000 0.87 0.00 0.00 3.51
2786 5312 1.003580 ACTTGTCGCTCCAATGGATGT 59.996 47.619 0.87 0.00 0.00 3.06
2789 5315 1.009829 GTCGCTCCAATGGATGTGTC 58.990 55.000 0.87 0.00 0.00 3.67
2790 5316 0.904649 TCGCTCCAATGGATGTGTCT 59.095 50.000 0.87 0.00 0.00 3.41
2791 5317 2.107366 TCGCTCCAATGGATGTGTCTA 58.893 47.619 0.87 0.00 0.00 2.59
2792 5318 2.101415 TCGCTCCAATGGATGTGTCTAG 59.899 50.000 0.87 0.00 0.00 2.43
2793 5319 2.216898 GCTCCAATGGATGTGTCTAGC 58.783 52.381 0.87 0.00 0.00 3.42
2814 5340 3.937814 CACCAAGTTAGTGCCAGATACA 58.062 45.455 0.00 0.00 0.00 2.29
2815 5341 4.517285 CACCAAGTTAGTGCCAGATACAT 58.483 43.478 0.00 0.00 0.00 2.29
2817 5343 4.943705 ACCAAGTTAGTGCCAGATACATTG 59.056 41.667 0.00 0.00 0.00 2.82
2818 5344 5.185454 CCAAGTTAGTGCCAGATACATTGA 58.815 41.667 0.00 0.00 0.00 2.57
2819 5345 5.824624 CCAAGTTAGTGCCAGATACATTGAT 59.175 40.000 0.00 0.00 0.00 2.57
2822 5348 3.572632 AGTGCCAGATACATTGATGCT 57.427 42.857 0.00 0.00 0.00 3.79
2825 5351 5.439721 AGTGCCAGATACATTGATGCTAAA 58.560 37.500 0.00 0.00 0.00 1.85
2826 5352 6.066690 AGTGCCAGATACATTGATGCTAAAT 58.933 36.000 0.00 0.00 0.00 1.40
2828 5354 7.886970 AGTGCCAGATACATTGATGCTAAATAT 59.113 33.333 0.00 0.00 0.00 1.28
2830 5356 9.910267 TGCCAGATACATTGATGCTAAATATAT 57.090 29.630 0.00 0.00 0.00 0.86
2853 5379 6.918892 TTCATTCGAGAAACAAGTTTGAGA 57.081 33.333 2.45 0.00 32.11 3.27
2854 5380 6.287107 TCATTCGAGAAACAAGTTTGAGAC 57.713 37.500 2.45 0.00 32.11 3.36
2855 5381 5.815222 TCATTCGAGAAACAAGTTTGAGACA 59.185 36.000 2.45 0.00 32.11 3.41
2856 5382 6.315144 TCATTCGAGAAACAAGTTTGAGACAA 59.685 34.615 2.45 0.00 32.11 3.18
2857 5383 5.718649 TCGAGAAACAAGTTTGAGACAAG 57.281 39.130 2.45 0.00 32.11 3.16
2858 5384 5.175859 TCGAGAAACAAGTTTGAGACAAGT 58.824 37.500 2.45 0.00 32.11 3.16
2859 5385 5.642063 TCGAGAAACAAGTTTGAGACAAGTT 59.358 36.000 2.45 0.00 32.11 2.66
2860 5386 6.148811 TCGAGAAACAAGTTTGAGACAAGTTT 59.851 34.615 2.45 0.00 38.99 2.66
2861 5387 6.801862 CGAGAAACAAGTTTGAGACAAGTTTT 59.198 34.615 2.45 0.00 37.51 2.43
2862 5388 7.326063 CGAGAAACAAGTTTGAGACAAGTTTTT 59.674 33.333 2.45 0.00 37.51 1.94
2876 5402 4.859400 TTTTTCGGACGGACAGCA 57.141 50.000 0.00 0.00 0.00 4.41
2877 5403 3.082165 TTTTTCGGACGGACAGCAA 57.918 47.368 0.00 0.00 0.00 3.91
2882 5408 0.607217 TCGGACGGACAGCAAGTCTA 60.607 55.000 8.88 0.00 46.72 2.59
2897 5423 6.975772 CAGCAAGTCTAGATAGAGGTTTGTAC 59.024 42.308 0.00 0.00 32.01 2.90
2898 5424 6.663953 AGCAAGTCTAGATAGAGGTTTGTACA 59.336 38.462 0.00 0.00 32.01 2.90
2899 5425 7.343316 AGCAAGTCTAGATAGAGGTTTGTACAT 59.657 37.037 0.00 0.00 32.01 2.29
2900 5426 7.650104 GCAAGTCTAGATAGAGGTTTGTACATC 59.350 40.741 0.00 0.00 35.36 3.06
2920 5449 1.105167 AGCCACGCAATGATGGATGG 61.105 55.000 8.00 0.00 38.34 3.51
2933 5462 1.127343 TGGATGGTATGATCCGTGCA 58.873 50.000 0.00 0.00 44.52 4.57
2948 5477 1.067974 CGTGCATACACCTTATCCGGA 59.932 52.381 6.61 6.61 44.40 5.14
2955 5484 5.568825 GCATACACCTTATCCGGACATGTAT 60.569 44.000 6.12 13.44 33.23 2.29
2960 5489 5.186992 CACCTTATCCGGACATGTATCCATA 59.813 44.000 6.12 0.00 38.87 2.74
2962 5491 6.443849 ACCTTATCCGGACATGTATCCATATT 59.556 38.462 6.12 0.00 38.87 1.28
2964 5493 7.829211 CCTTATCCGGACATGTATCCATATTTT 59.171 37.037 6.12 0.00 38.87 1.82
2965 5494 9.231297 CTTATCCGGACATGTATCCATATTTTT 57.769 33.333 6.12 0.00 38.87 1.94
2988 5517 0.035439 GGGTCCGTCCATGTCACATT 60.035 55.000 0.00 0.00 38.11 2.71
3697 6321 1.428448 CTCATCTGCGGTTTGTTCGA 58.572 50.000 0.00 0.00 0.00 3.71
3808 6434 2.301870 CAGCCCCTAGTTGTGTGTTCTA 59.698 50.000 0.00 0.00 0.00 2.10
4038 6673 3.105937 GGACTTGCAACTCGAACAAAAC 58.894 45.455 0.00 0.00 0.00 2.43
4085 6722 3.493503 GGTGAACTTACAACTCGGACAAG 59.506 47.826 0.00 0.00 0.00 3.16
4107 6745 1.111277 AAGTTTGTCCCCAGTTGCAC 58.889 50.000 0.00 0.00 0.00 4.57
4237 6875 4.479158 GAGAGTGGATCTGGAACTAGGAT 58.521 47.826 0.00 0.00 38.84 3.24
4357 7323 1.188871 GGAAAAATCACGGGCCCCAA 61.189 55.000 18.66 1.09 0.00 4.12
4367 7333 2.361104 GGCCCCAATTGCGAGTCA 60.361 61.111 0.00 0.00 0.00 3.41
5070 8223 2.035961 TCAAAGGTCGTCAGTGAGAAGG 59.964 50.000 0.00 0.00 0.00 3.46
5531 8732 5.464030 ACTCAGAAACACGTGTACCTAAT 57.536 39.130 23.69 1.22 0.00 1.73
6337 9671 1.145803 GTTTGGCAGAGGACGTGTAC 58.854 55.000 0.00 0.00 0.00 2.90
6344 9678 1.400846 CAGAGGACGTGTACTATGCGT 59.599 52.381 0.00 0.00 41.81 5.24
6364 9726 1.225855 TTGTCTGCCAACTAGTTGCG 58.774 50.000 27.05 20.73 39.16 4.85
6480 9863 4.049640 GTGGGAAAATGGCGCGCA 62.050 61.111 34.42 19.50 0.00 6.09
6550 9957 1.455849 CTTGTCCAGGAGCACCCAA 59.544 57.895 0.00 0.00 37.41 4.12
6553 9960 3.636231 TCCAGGAGCACCCAACCG 61.636 66.667 0.00 0.00 37.41 4.44
6555 9962 3.636231 CAGGAGCACCCAACCGGA 61.636 66.667 9.46 0.00 37.41 5.14
6558 9965 3.056328 GAGCACCCAACCGGAAGC 61.056 66.667 9.46 2.14 36.74 3.86
6559 9966 3.842925 GAGCACCCAACCGGAAGCA 62.843 63.158 9.46 0.00 38.25 3.91
6560 9967 3.670377 GCACCCAACCGGAAGCAC 61.670 66.667 9.46 0.00 36.57 4.40
6592 9999 2.809174 TCAATGTCAGTCGCCGCG 60.809 61.111 6.39 6.39 0.00 6.46
6625 10055 3.706373 CCACCCACCCCTGTCTCG 61.706 72.222 0.00 0.00 0.00 4.04
6722 10152 0.249489 ACTGACAACGACAGCCACTC 60.249 55.000 0.00 0.00 38.74 3.51
6729 10159 3.083997 GACAGCCACTCGGGGGAT 61.084 66.667 0.00 0.00 37.04 3.85
6730 10160 3.391665 GACAGCCACTCGGGGGATG 62.392 68.421 8.63 8.63 46.95 3.51
6731 10161 4.181010 CAGCCACTCGGGGGATGG 62.181 72.222 2.83 0.00 38.15 3.51
6734 10164 4.815973 CCACTCGGGGGATGGGGA 62.816 72.222 0.00 0.00 0.00 4.81
6735 10165 2.448542 CACTCGGGGGATGGGGAT 60.449 66.667 0.00 0.00 0.00 3.85
6736 10166 2.122369 ACTCGGGGGATGGGGATC 60.122 66.667 0.00 0.00 0.00 3.36
6737 10167 3.314331 CTCGGGGGATGGGGATCG 61.314 72.222 0.00 0.00 0.00 3.69
6738 10168 3.828083 CTCGGGGGATGGGGATCGA 62.828 68.421 0.00 0.00 0.00 3.59
6740 10170 2.122369 GGGGGATGGGGATCGAGT 60.122 66.667 0.00 0.00 0.00 4.18
6741 10171 1.770518 GGGGGATGGGGATCGAGTT 60.771 63.158 0.00 0.00 0.00 3.01
6744 10174 1.367840 GGATGGGGATCGAGTTCGG 59.632 63.158 1.26 0.00 40.29 4.30
6746 10176 2.717139 GATGGGGATCGAGTTCGGGC 62.717 65.000 1.26 0.00 40.29 6.13
6748 10178 4.587189 GGGATCGAGTTCGGGCGG 62.587 72.222 1.26 0.00 40.29 6.13
6768 10198 4.729918 GGAGTGGGGTGCAGCCAG 62.730 72.222 34.28 0.00 39.65 4.85
6860 10310 4.961511 GTGACCACGCGCACAGGA 62.962 66.667 15.65 0.00 35.19 3.86
6861 10311 4.002506 TGACCACGCGCACAGGAT 62.003 61.111 15.65 1.50 0.00 3.24
6862 10312 3.490759 GACCACGCGCACAGGATG 61.491 66.667 15.65 0.00 46.00 3.51
6944 10396 4.882396 GAGGCGAGGCGAGGAAGC 62.882 72.222 0.00 0.00 0.00 3.86
6948 10400 4.521062 CGAGGCGAGGAAGCAGGG 62.521 72.222 0.00 0.00 39.27 4.45
6949 10401 3.077556 GAGGCGAGGAAGCAGGGA 61.078 66.667 0.00 0.00 39.27 4.20
6950 10402 3.080121 AGGCGAGGAAGCAGGGAG 61.080 66.667 0.00 0.00 39.27 4.30
6951 10403 3.394836 GGCGAGGAAGCAGGGAGT 61.395 66.667 0.00 0.00 39.27 3.85
6952 10404 2.125350 GCGAGGAAGCAGGGAGTG 60.125 66.667 0.00 0.00 37.05 3.51
6953 10405 2.948720 GCGAGGAAGCAGGGAGTGT 61.949 63.158 0.00 0.00 37.05 3.55
6954 10406 1.674057 CGAGGAAGCAGGGAGTGTT 59.326 57.895 0.00 0.00 0.00 3.32
6957 10409 1.303643 GGAAGCAGGGAGTGTTGGG 60.304 63.158 0.00 0.00 0.00 4.12
6973 10460 0.537143 TGGGGCAGTGCAGTAAACTG 60.537 55.000 18.61 5.73 46.39 3.16
6982 10469 5.003804 CAGTGCAGTAAACTGGGAATAACT 58.996 41.667 11.86 0.00 43.94 2.24
6993 10480 8.421249 AAACTGGGAATAACTTGATTGAATCA 57.579 30.769 3.29 3.29 37.55 2.57
6995 10482 8.599624 ACTGGGAATAACTTGATTGAATCATT 57.400 30.769 8.90 4.10 39.39 2.57
6996 10483 9.039165 ACTGGGAATAACTTGATTGAATCATTT 57.961 29.630 8.90 8.02 39.39 2.32
7019 10506 7.868906 TTTTTCTTCTTCGAAAAGGAGGTAA 57.131 32.000 15.40 2.97 42.05 2.85
7020 10507 7.868906 TTTTCTTCTTCGAAAAGGAGGTAAA 57.131 32.000 15.40 7.54 38.49 2.01
7021 10508 7.868906 TTTCTTCTTCGAAAAGGAGGTAAAA 57.131 32.000 15.40 8.22 38.49 1.52
7022 10509 7.868906 TTCTTCTTCGAAAAGGAGGTAAAAA 57.131 32.000 15.40 3.23 38.49 1.94
7024 10511 6.261603 TCTTCTTCGAAAAGGAGGTAAAAACC 59.738 38.462 15.40 0.00 38.49 3.27
7026 10513 5.297527 TCTTCGAAAAGGAGGTAAAAACCAC 59.702 40.000 0.00 0.00 33.03 4.16
7031 10518 1.254026 GGAGGTAAAAACCACCTGCC 58.746 55.000 0.00 0.00 46.60 4.85
7032 10519 1.203013 GGAGGTAAAAACCACCTGCCT 60.203 52.381 0.00 0.00 46.60 4.75
7033 10520 2.160205 GAGGTAAAAACCACCTGCCTC 58.840 52.381 0.00 0.00 46.60 4.70
7034 10521 1.780919 AGGTAAAAACCACCTGCCTCT 59.219 47.619 0.00 0.00 44.89 3.69
7035 10522 1.886542 GGTAAAAACCACCTGCCTCTG 59.113 52.381 0.00 0.00 32.98 3.35
7036 10523 1.269723 GTAAAAACCACCTGCCTCTGC 59.730 52.381 0.00 0.00 38.26 4.26
7054 10541 3.812097 CATCAATCGATGCACACGG 57.188 52.632 13.67 0.74 42.54 4.94
7055 10542 0.316442 CATCAATCGATGCACACGGC 60.316 55.000 13.67 0.00 42.54 5.68
7056 10543 1.439353 ATCAATCGATGCACACGGCC 61.439 55.000 13.67 0.00 43.89 6.13
7075 10991 2.903678 CCGTGTGAATTCTGAACGTTG 58.096 47.619 5.00 0.00 32.53 4.10
7079 10995 0.940833 TGAATTCTGAACGTTGCGCA 59.059 45.000 5.66 5.66 0.00 6.09
7097 11013 2.535984 CGCAGCTTCGAACTATTACCAG 59.464 50.000 0.00 0.00 0.00 4.00
7098 11014 3.522553 GCAGCTTCGAACTATTACCAGT 58.477 45.455 0.00 0.00 0.00 4.00
7099 11015 3.933332 GCAGCTTCGAACTATTACCAGTT 59.067 43.478 0.00 0.00 41.44 3.16
7116 11032 6.642683 ACCAGTTCAACGACTTATATTTCG 57.357 37.500 0.00 2.73 41.14 3.46
7117 11033 5.579511 ACCAGTTCAACGACTTATATTTCGG 59.420 40.000 8.03 0.00 39.63 4.30
7118 11034 5.808540 CCAGTTCAACGACTTATATTTCGGA 59.191 40.000 8.03 0.00 39.63 4.55
7120 11036 7.171434 CAGTTCAACGACTTATATTTCGGAAC 58.829 38.462 12.65 12.65 39.63 3.62
7142 11124 3.676324 CGGAGGGAGTAGCAACTAACAAG 60.676 52.174 0.00 0.00 35.56 3.16
7162 11144 4.363991 AGATCTTCTTGACAAAGCCTGT 57.636 40.909 0.00 0.00 42.61 4.00
7163 11145 4.070716 AGATCTTCTTGACAAAGCCTGTG 58.929 43.478 0.00 0.00 38.84 3.66
7164 11146 3.281727 TCTTCTTGACAAAGCCTGTGT 57.718 42.857 0.00 0.00 38.84 3.72
7165 11147 3.620488 TCTTCTTGACAAAGCCTGTGTT 58.380 40.909 0.00 0.00 38.84 3.32
7166 11148 3.627577 TCTTCTTGACAAAGCCTGTGTTC 59.372 43.478 0.00 0.00 38.84 3.18
7167 11149 1.939934 TCTTGACAAAGCCTGTGTTCG 59.060 47.619 0.00 0.00 38.84 3.95
7168 11150 1.670811 CTTGACAAAGCCTGTGTTCGT 59.329 47.619 0.00 0.00 38.84 3.85
7172 11154 2.354821 GACAAAGCCTGTGTTCGTTTCT 59.645 45.455 0.00 0.00 38.84 2.52
7177 11159 1.540363 GCCTGTGTTCGTTTCTCTCCA 60.540 52.381 0.00 0.00 0.00 3.86
7193 11175 0.679505 TCCAGCACTGACTAACGCTT 59.320 50.000 0.00 0.00 30.72 4.68
7194 11176 0.792640 CCAGCACTGACTAACGCTTG 59.207 55.000 0.00 0.00 30.72 4.01
7196 11178 0.951040 AGCACTGACTAACGCTTGCC 60.951 55.000 0.00 0.00 0.00 4.52
7197 11179 0.951040 GCACTGACTAACGCTTGCCT 60.951 55.000 0.00 0.00 0.00 4.75
7198 11180 0.792640 CACTGACTAACGCTTGCCTG 59.207 55.000 0.00 0.00 0.00 4.85
7200 11182 1.202651 ACTGACTAACGCTTGCCTGTT 60.203 47.619 0.00 0.00 0.00 3.16
7742 11741 1.675641 GGCCATCGTCACCAAGCTT 60.676 57.895 0.00 0.00 0.00 3.74
8162 12167 4.194720 ATCGCGCTCTCCACCGTC 62.195 66.667 5.56 0.00 0.00 4.79
8408 12413 3.435186 GCCTTCTGCAACCTCGCC 61.435 66.667 0.00 0.00 40.77 5.54
8411 12416 2.032528 TTCTGCAACCTCGCCCTG 59.967 61.111 0.00 0.00 0.00 4.45
8537 12542 1.598962 CTGGATGATCGCCGGCATT 60.599 57.895 28.98 13.31 0.00 3.56
8552 12557 1.000274 GGCATTGGCGTCTTCAACTTT 60.000 47.619 0.00 0.00 42.47 2.66
8691 12704 4.489306 ACCACAGTAGCTATTTCCCTTC 57.511 45.455 0.00 0.00 0.00 3.46
8694 12707 4.080863 CCACAGTAGCTATTTCCCTTCTGT 60.081 45.833 0.00 0.00 39.34 3.41
8790 12815 7.506114 AGGAAGAAATGTACTGTAGACAACAA 58.494 34.615 0.00 0.00 37.74 2.83
8805 12830 4.904853 AGACAACAATGGGGTGGTTAATTT 59.095 37.500 0.00 0.00 0.00 1.82
8819 12844 7.436970 GGGTGGTTAATTTCTTGTAAGTTGTTG 59.563 37.037 0.00 0.00 0.00 3.33
8857 12882 6.126623 ACAACAATGGGGTGGTTAATTTCTTT 60.127 34.615 0.00 0.00 0.00 2.52
8858 12883 6.109156 ACAATGGGGTGGTTAATTTCTTTC 57.891 37.500 0.00 0.00 0.00 2.62
8859 12884 5.843969 ACAATGGGGTGGTTAATTTCTTTCT 59.156 36.000 0.00 0.00 0.00 2.52
8860 12885 6.328934 ACAATGGGGTGGTTAATTTCTTTCTT 59.671 34.615 0.00 0.00 0.00 2.52
8920 12945 2.666272 TGTGGTTGGTTTCAGGCATA 57.334 45.000 0.00 0.00 0.00 3.14
8921 12946 2.950781 TGTGGTTGGTTTCAGGCATAA 58.049 42.857 0.00 0.00 0.00 1.90
8922 12947 3.505386 TGTGGTTGGTTTCAGGCATAAT 58.495 40.909 0.00 0.00 0.00 1.28
8923 12948 3.257873 TGTGGTTGGTTTCAGGCATAATG 59.742 43.478 0.00 0.00 0.00 1.90
8924 12949 3.258123 GTGGTTGGTTTCAGGCATAATGT 59.742 43.478 0.00 0.00 0.00 2.71
8925 12950 3.257873 TGGTTGGTTTCAGGCATAATGTG 59.742 43.478 0.00 0.00 0.00 3.21
8983 13008 6.734137 TCACATTTCCACTGTGTTTTGTATC 58.266 36.000 7.08 0.00 43.53 2.24
8989 13014 3.314913 CCACTGTGTTTTGTATCTGTGCA 59.685 43.478 7.08 0.00 0.00 4.57
9013 13038 0.247736 CTGCTAACCTTCTGCCGAGT 59.752 55.000 0.00 0.00 0.00 4.18
9064 13134 2.955614 TCTTAGTAAGAACCAGTGCGC 58.044 47.619 10.25 0.00 33.83 6.09
9084 13154 2.167219 CATACTGACAGGCACGCCG 61.167 63.158 7.51 0.37 41.95 6.46
9116 13186 6.144078 ACAAACTAACCATGGACAACTTTC 57.856 37.500 21.47 0.00 0.00 2.62
9143 13213 9.343103 CTATCACGAGATATGTACATTGTTACC 57.657 37.037 14.77 0.00 36.21 2.85
9167 13240 3.103911 GACACCGACGGCGAACTG 61.104 66.667 15.16 6.85 40.82 3.16
9229 13302 3.835478 TCTCCAGGGAGAAGAAAGAGA 57.165 47.619 15.51 0.00 46.89 3.10
9232 13305 2.383683 TCCAGGGAGAAGAAAGAGAGGA 59.616 50.000 0.00 0.00 0.00 3.71
9244 13317 5.301555 AGAAAGAGAGGAAAGGAAAGAACG 58.698 41.667 0.00 0.00 0.00 3.95
9249 13322 2.616842 GAGGAAAGGAAAGAACGCACAA 59.383 45.455 0.00 0.00 0.00 3.33
9252 13325 3.428316 GGAAAGGAAAGAACGCACAAACA 60.428 43.478 0.00 0.00 0.00 2.83
9253 13326 4.359706 GAAAGGAAAGAACGCACAAACAT 58.640 39.130 0.00 0.00 0.00 2.71
9254 13327 4.385358 AAGGAAAGAACGCACAAACATT 57.615 36.364 0.00 0.00 0.00 2.71
9255 13328 3.705604 AGGAAAGAACGCACAAACATTG 58.294 40.909 0.00 0.00 0.00 2.82
9285 13358 3.554342 CTCCCATCTCAGCGGGGG 61.554 72.222 0.97 0.00 43.29 5.40
9286 13359 4.414956 TCCCATCTCAGCGGGGGT 62.415 66.667 0.97 0.00 43.29 4.95
9314 13387 1.056660 CACCCTGACCCTACACTGTT 58.943 55.000 0.00 0.00 0.00 3.16
9316 13389 1.348064 CCCTGACCCTACACTGTTCA 58.652 55.000 0.00 0.00 0.00 3.18
9323 13396 1.798813 CCCTACACTGTTCAAAGTCGC 59.201 52.381 0.00 0.00 0.00 5.19
9340 13413 1.710339 GCGCGTGGCTCTCTAAAAG 59.290 57.895 8.43 0.00 39.11 2.27
9346 13419 4.653004 GCGTGGCTCTCTAAAAGAAAATC 58.347 43.478 0.00 0.00 32.23 2.17
9351 13424 7.525759 GTGGCTCTCTAAAAGAAAATCAAGAG 58.474 38.462 0.00 0.00 32.23 2.85
9353 13426 8.105829 TGGCTCTCTAAAAGAAAATCAAGAGAT 58.894 33.333 0.00 0.00 38.89 2.75
9394 13467 7.604545 ACTGATAAGCTACAAGGAAGAAAGAAC 59.395 37.037 0.00 0.00 0.00 3.01
9396 13469 8.103305 TGATAAGCTACAAGGAAGAAAGAACAT 58.897 33.333 0.00 0.00 0.00 2.71
9502 13579 5.536916 TCATAAGGTTGTTTTCGTTCCCATT 59.463 36.000 0.00 0.00 0.00 3.16
9512 13589 2.644676 TCGTTCCCATTGTTGTTCACA 58.355 42.857 0.00 0.00 0.00 3.58
9596 13673 3.587061 ACCAACACCCACTATCAGATGAA 59.413 43.478 0.00 0.00 0.00 2.57
9604 13681 5.485353 ACCCACTATCAGATGAAGTGAAAGA 59.515 40.000 13.12 0.00 42.59 2.52
9612 13689 5.987953 TCAGATGAAGTGAAAGAAGTGACAG 59.012 40.000 0.00 0.00 0.00 3.51
9617 13694 5.582269 TGAAGTGAAAGAAGTGACAGTGAAG 59.418 40.000 0.00 0.00 0.00 3.02
9618 13695 5.091261 AGTGAAAGAAGTGACAGTGAAGT 57.909 39.130 0.00 0.00 0.00 3.01
9619 13696 6.222038 AGTGAAAGAAGTGACAGTGAAGTA 57.778 37.500 0.00 0.00 0.00 2.24
9628 13705 5.403246 AGTGACAGTGAAGTAAGAATAGCG 58.597 41.667 0.00 0.00 0.00 4.26
9650 13727 3.056107 GCGCCATTACCTCATATCTACCA 60.056 47.826 0.00 0.00 0.00 3.25
9711 13788 5.721480 TCTGATTGTTCCATCCTTCTCTACA 59.279 40.000 0.00 0.00 0.00 2.74
9764 13842 5.512473 ACTCAAGAATAAGACGATAGCGAC 58.488 41.667 7.69 0.00 41.64 5.19
9765 13843 5.066117 ACTCAAGAATAAGACGATAGCGACA 59.934 40.000 7.69 0.00 41.64 4.35
9771 13849 3.957671 AAGACGATAGCGACAACGATA 57.042 42.857 7.69 0.00 44.16 2.92
9785 13867 8.552865 AGCGACAACGATATATAGATAGATGAC 58.447 37.037 5.06 0.00 42.66 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 145 3.885976 AGGACGAGGAGGAGATATTGA 57.114 47.619 0.00 0.00 0.00 2.57
156 164 5.232610 ACTACAACGATTCGTCCTCTAAG 57.767 43.478 12.80 7.17 39.99 2.18
158 166 3.308053 CGACTACAACGATTCGTCCTCTA 59.692 47.826 12.80 0.00 39.99 2.43
175 183 5.888691 TTTCATAATTGCCTTTGCGACTA 57.111 34.783 0.00 0.00 41.78 2.59
187 195 5.508224 GCCGACGAGTTCTTTTTCATAATTG 59.492 40.000 0.00 0.00 0.00 2.32
354 421 0.538746 GCCCCCGACCAAGAAAAGAA 60.539 55.000 0.00 0.00 0.00 2.52
355 422 1.074248 GCCCCCGACCAAGAAAAGA 59.926 57.895 0.00 0.00 0.00 2.52
356 423 2.332654 CGCCCCCGACCAAGAAAAG 61.333 63.158 0.00 0.00 36.29 2.27
357 424 2.281900 CGCCCCCGACCAAGAAAA 60.282 61.111 0.00 0.00 36.29 2.29
358 425 4.338710 CCGCCCCCGACCAAGAAA 62.339 66.667 0.00 0.00 36.29 2.52
496 568 1.154035 CATTTTTGCCGGCGACTCC 60.154 57.895 23.90 0.00 0.00 3.85
557 631 2.397902 ATTGGCCTCCCCCATCCAG 61.398 63.158 3.32 0.00 34.21 3.86
681 770 4.020378 GCTTTTCGTTCGCGGGCA 62.020 61.111 6.13 0.00 41.70 5.36
711 800 3.732892 CATTTTGTCCGCCGCCGT 61.733 61.111 0.00 0.00 0.00 5.68
712 801 4.474846 CCATTTTGTCCGCCGCCG 62.475 66.667 0.00 0.00 0.00 6.46
713 802 4.128388 CCCATTTTGTCCGCCGCC 62.128 66.667 0.00 0.00 0.00 6.13
715 804 2.874751 GACCCATTTTGTCCGCCG 59.125 61.111 0.00 0.00 0.00 6.46
717 806 2.178273 GCGACCCATTTTGTCCGC 59.822 61.111 0.00 0.00 0.00 5.54
777 870 8.632679 AGAGCTCACTTGTTTTAAAATGAATGA 58.367 29.630 17.77 5.96 0.00 2.57
807 900 1.042003 ACAGTGCATTGTGCCCAACA 61.042 50.000 14.74 0.00 44.23 3.33
809 902 0.104487 CAACAGTGCATTGTGCCCAA 59.896 50.000 16.25 0.00 44.23 4.12
818 911 3.407698 TGTTATCCGAACAACAGTGCAT 58.592 40.909 0.00 0.00 31.29 3.96
819 912 2.839975 TGTTATCCGAACAACAGTGCA 58.160 42.857 0.00 0.00 31.29 4.57
820 913 3.889196 TTGTTATCCGAACAACAGTGC 57.111 42.857 0.00 0.00 36.13 4.40
853 946 1.626356 GCCCATGCTGTCAGGGAGTA 61.626 60.000 1.14 0.00 46.59 2.59
866 959 3.145551 GCCAGAAGCAGGCCCATG 61.146 66.667 0.00 0.00 46.50 3.66
981 2789 0.326522 TGAGGGGAATGCTCTGCCTA 60.327 55.000 0.00 0.00 0.00 3.93
992 2800 2.376518 AGCAAAATGAGACTGAGGGGAA 59.623 45.455 0.00 0.00 0.00 3.97
1224 3059 0.034337 TTCCAGCCGTGGTACTTGAC 59.966 55.000 0.00 0.00 45.28 3.18
1270 3105 1.337823 CGACCACTTCCTGGGTACTTG 60.338 57.143 0.00 0.00 45.78 3.16
1271 3106 0.974383 CGACCACTTCCTGGGTACTT 59.026 55.000 0.00 0.00 45.78 2.24
1272 3107 0.113776 TCGACCACTTCCTGGGTACT 59.886 55.000 0.00 0.00 45.78 2.73
1273 3108 0.245813 GTCGACCACTTCCTGGGTAC 59.754 60.000 3.51 0.00 45.78 3.34
1274 3109 1.246056 CGTCGACCACTTCCTGGGTA 61.246 60.000 10.58 0.00 45.78 3.69
1275 3110 2.571216 CGTCGACCACTTCCTGGGT 61.571 63.158 10.58 0.00 45.78 4.51
1276 3111 2.261671 CGTCGACCACTTCCTGGG 59.738 66.667 10.58 0.00 45.78 4.45
1278 3113 2.805353 CGCGTCGACCACTTCCTG 60.805 66.667 10.58 0.00 0.00 3.86
1279 3114 3.292936 ACGCGTCGACCACTTCCT 61.293 61.111 5.58 0.00 0.00 3.36
1281 3116 2.354305 ACACGCGTCGACCACTTC 60.354 61.111 9.86 0.00 0.00 3.01
1282 3117 2.657296 CACACGCGTCGACCACTT 60.657 61.111 9.86 0.00 0.00 3.16
1570 3427 0.998945 AGAGGAGAGGAGAGGGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
1571 3428 0.933700 AAGAGGAGAGGAGAGGGGAG 59.066 60.000 0.00 0.00 0.00 4.30
1572 3429 0.930726 GAAGAGGAGAGGAGAGGGGA 59.069 60.000 0.00 0.00 0.00 4.81
1573 3430 0.105709 GGAAGAGGAGAGGAGAGGGG 60.106 65.000 0.00 0.00 0.00 4.79
1574 3431 0.105709 GGGAAGAGGAGAGGAGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
1575 3432 0.633921 TGGGAAGAGGAGAGGAGAGG 59.366 60.000 0.00 0.00 0.00 3.69
1576 3433 1.687996 GGTGGGAAGAGGAGAGGAGAG 60.688 61.905 0.00 0.00 0.00 3.20
1577 3434 0.336737 GGTGGGAAGAGGAGAGGAGA 59.663 60.000 0.00 0.00 0.00 3.71
1578 3435 0.041833 TGGTGGGAAGAGGAGAGGAG 59.958 60.000 0.00 0.00 0.00 3.69
1579 3436 0.491823 TTGGTGGGAAGAGGAGAGGA 59.508 55.000 0.00 0.00 0.00 3.71
1590 3447 2.039298 TGGTGGGAGTTGGTGGGA 60.039 61.111 0.00 0.00 0.00 4.37
1623 3480 3.564027 GACATACAGGGCGCGTGC 61.564 66.667 13.78 13.78 41.71 5.34
1629 3486 3.612004 GCTACGATACAGACATACAGGGC 60.612 52.174 0.00 0.00 0.00 5.19
1641 3498 1.602851 GCGAGAAGAGGCTACGATACA 59.397 52.381 0.00 0.00 0.00 2.29
1642 3499 1.874872 AGCGAGAAGAGGCTACGATAC 59.125 52.381 0.00 0.00 37.83 2.24
1644 3501 0.665835 CAGCGAGAAGAGGCTACGAT 59.334 55.000 0.00 0.00 37.41 3.73
1645 3502 1.994507 GCAGCGAGAAGAGGCTACGA 61.995 60.000 0.00 0.00 37.41 3.43
1646 3503 1.587613 GCAGCGAGAAGAGGCTACG 60.588 63.158 0.00 0.00 37.41 3.51
1692 3553 1.348250 CGGTCAATGGCGTTCATCG 59.652 57.895 0.00 0.00 43.12 3.84
1693 3554 1.721487 CCGGTCAATGGCGTTCATC 59.279 57.895 0.00 0.00 34.44 2.92
1695 3556 3.053291 GCCGGTCAATGGCGTTCA 61.053 61.111 1.90 0.00 43.70 3.18
1796 3660 1.680522 GAGCTGAATCTCGAGCCCCA 61.681 60.000 7.81 4.01 35.69 4.96
1813 3677 2.180131 GAAGCACAGGCACAAGCGAG 62.180 60.000 0.00 0.00 44.61 5.03
1815 3679 2.253452 GAAGCACAGGCACAAGCG 59.747 61.111 0.00 0.00 44.61 4.68
1819 3683 3.555324 TCCCGAAGCACAGGCACA 61.555 61.111 0.00 0.00 44.61 4.57
1896 3766 0.465460 AGGCCAACTCGAAAGTGCAA 60.465 50.000 5.01 0.00 35.36 4.08
1953 3837 2.860293 CACGCACGTGGTTGATCC 59.140 61.111 18.88 0.00 42.00 3.36
1972 3856 0.384725 CGTTGAGCAAGAACAAGGCG 60.385 55.000 0.00 0.00 0.00 5.52
1973 3857 3.461843 CGTTGAGCAAGAACAAGGC 57.538 52.632 0.00 0.00 0.00 4.35
2006 3898 6.835174 ACTAATGCTGATCCACATCTACAAT 58.165 36.000 0.00 0.00 0.00 2.71
2030 3938 5.646360 GCTACCACTAGTTGCAAATTTCCTA 59.354 40.000 4.05 0.00 45.28 2.94
2031 3939 4.459337 GCTACCACTAGTTGCAAATTTCCT 59.541 41.667 4.05 0.00 45.28 3.36
2032 3940 4.671766 CGCTACCACTAGTTGCAAATTTCC 60.672 45.833 4.05 0.00 46.13 3.13
2066 4490 3.056322 ACGCTCCAACCGTTCTTATTAGT 60.056 43.478 0.00 0.00 34.96 2.24
2074 4498 2.355481 ACGACGCTCCAACCGTTC 60.355 61.111 0.00 0.00 39.30 3.95
2135 4564 0.460987 GCTCCTCATCAACCGTCCTG 60.461 60.000 0.00 0.00 0.00 3.86
2169 4609 0.103572 TACCCATAAACTCGAGCCGC 59.896 55.000 13.61 0.00 0.00 6.53
2181 4621 9.793259 GATGATTCCTGTTTAAATCTACCCATA 57.207 33.333 0.00 0.00 33.86 2.74
2183 4623 7.060421 GGATGATTCCTGTTTAAATCTACCCA 58.940 38.462 0.00 0.00 39.14 4.51
2184 4624 7.060421 TGGATGATTCCTGTTTAAATCTACCC 58.940 38.462 0.00 0.00 43.07 3.69
2216 4656 3.311106 CGGCTAACACGTACTCAGAAAA 58.689 45.455 0.00 0.00 0.00 2.29
2218 4658 1.200716 CCGGCTAACACGTACTCAGAA 59.799 52.381 0.00 0.00 0.00 3.02
2219 4659 0.806868 CCGGCTAACACGTACTCAGA 59.193 55.000 0.00 0.00 0.00 3.27
2220 4660 0.801067 GCCGGCTAACACGTACTCAG 60.801 60.000 22.15 0.00 0.00 3.35
2221 4661 1.213537 GCCGGCTAACACGTACTCA 59.786 57.895 22.15 0.00 0.00 3.41
2222 4662 1.517913 GGCCGGCTAACACGTACTC 60.518 63.158 28.56 0.00 0.00 2.59
2223 4663 2.575461 GGCCGGCTAACACGTACT 59.425 61.111 28.56 0.00 0.00 2.73
2224 4664 2.882301 CGGCCGGCTAACACGTAC 60.882 66.667 28.56 4.75 0.00 3.67
2225 4665 3.055080 CTCGGCCGGCTAACACGTA 62.055 63.158 28.56 9.77 0.00 3.57
2226 4666 4.430765 CTCGGCCGGCTAACACGT 62.431 66.667 28.56 0.00 0.00 4.49
2227 4667 2.345880 ATACTCGGCCGGCTAACACG 62.346 60.000 28.56 20.99 0.00 4.49
2228 4668 0.874607 CATACTCGGCCGGCTAACAC 60.875 60.000 28.56 8.15 0.00 3.32
2229 4669 1.440060 CATACTCGGCCGGCTAACA 59.560 57.895 28.56 8.63 0.00 2.41
2230 4670 1.954651 GCATACTCGGCCGGCTAAC 60.955 63.158 28.56 9.02 0.00 2.34
2231 4671 1.682451 AAGCATACTCGGCCGGCTAA 61.682 55.000 28.56 13.92 33.80 3.09
2232 4672 0.824595 TAAGCATACTCGGCCGGCTA 60.825 55.000 28.56 15.19 33.80 3.93
2233 4673 2.088674 CTAAGCATACTCGGCCGGCT 62.089 60.000 28.56 22.60 36.13 5.52
2234 4674 1.664965 CTAAGCATACTCGGCCGGC 60.665 63.158 27.83 21.18 0.00 6.13
2235 4675 1.006102 CCTAAGCATACTCGGCCGG 60.006 63.158 27.83 18.67 0.00 6.13
2236 4676 1.006102 CCCTAAGCATACTCGGCCG 60.006 63.158 22.12 22.12 0.00 6.13
2237 4677 1.371558 CCCCTAAGCATACTCGGCC 59.628 63.158 0.00 0.00 0.00 6.13
2238 4678 1.301795 GCCCCTAAGCATACTCGGC 60.302 63.158 0.00 0.00 0.00 5.54
2239 4679 1.122019 AGGCCCCTAAGCATACTCGG 61.122 60.000 0.00 0.00 0.00 4.63
2240 4680 0.034059 CAGGCCCCTAAGCATACTCG 59.966 60.000 0.00 0.00 0.00 4.18
2241 4681 1.132500 ACAGGCCCCTAAGCATACTC 58.868 55.000 0.00 0.00 0.00 2.59
2242 4682 2.489528 TACAGGCCCCTAAGCATACT 57.510 50.000 0.00 0.00 0.00 2.12
2243 4683 4.903045 TTATACAGGCCCCTAAGCATAC 57.097 45.455 0.00 0.00 0.00 2.39
2244 4684 4.473559 GGATTATACAGGCCCCTAAGCATA 59.526 45.833 0.00 0.00 0.00 3.14
2260 4700 6.605471 AGCGTCATTATGGTCAGGATTATA 57.395 37.500 0.00 0.00 0.00 0.98
2333 4774 1.275010 TCATGAGTTGCGCCTCACTTA 59.725 47.619 17.03 8.22 43.86 2.24
2377 4823 3.302365 TTAACACACGTAGGGCACTAC 57.698 47.619 16.58 16.58 44.91 2.73
2403 4849 3.324108 TTAGCCCCGTGGTCACCC 61.324 66.667 0.00 0.00 0.00 4.61
2412 4858 0.736325 CGACAACAGTCTTAGCCCCG 60.736 60.000 0.00 0.00 0.00 5.73
2423 4869 0.850217 TCGCTCGAAAACGACAACAG 59.150 50.000 1.17 0.00 32.45 3.16
2464 4910 2.025155 GGAGTAGTAGTAGCAGCAGCA 58.975 52.381 3.17 0.00 45.49 4.41
2465 4911 1.338655 GGGAGTAGTAGTAGCAGCAGC 59.661 57.143 0.00 0.00 42.56 5.25
2467 4913 3.288964 GAAGGGAGTAGTAGTAGCAGCA 58.711 50.000 0.00 0.00 0.00 4.41
2468 4914 2.291190 CGAAGGGAGTAGTAGTAGCAGC 59.709 54.545 0.00 0.00 0.00 5.25
2469 4915 3.543665 ACGAAGGGAGTAGTAGTAGCAG 58.456 50.000 0.00 0.00 0.00 4.24
2470 4916 3.641434 ACGAAGGGAGTAGTAGTAGCA 57.359 47.619 0.00 0.00 0.00 3.49
2471 4917 3.002144 CGAACGAAGGGAGTAGTAGTAGC 59.998 52.174 0.00 0.00 0.00 3.58
2472 4918 3.559242 CCGAACGAAGGGAGTAGTAGTAG 59.441 52.174 0.00 0.00 0.00 2.57
2473 4919 3.197766 TCCGAACGAAGGGAGTAGTAGTA 59.802 47.826 0.00 0.00 0.00 1.82
2474 4920 2.026822 TCCGAACGAAGGGAGTAGTAGT 60.027 50.000 0.00 0.00 0.00 2.73
2475 4921 2.636830 TCCGAACGAAGGGAGTAGTAG 58.363 52.381 0.00 0.00 0.00 2.57
2478 4932 3.521947 AATTCCGAACGAAGGGAGTAG 57.478 47.619 0.00 0.00 32.78 2.57
2487 4941 7.712264 TTTAAAGACAAGTAATTCCGAACGA 57.288 32.000 0.00 0.00 0.00 3.85
2533 4987 7.358931 CGCGAAAATGGATGTATCTAAACGTAT 60.359 37.037 0.00 0.00 0.00 3.06
2534 4988 6.074729 CGCGAAAATGGATGTATCTAAACGTA 60.075 38.462 0.00 0.00 0.00 3.57
2535 4989 5.276678 CGCGAAAATGGATGTATCTAAACGT 60.277 40.000 0.00 0.00 0.00 3.99
2536 4990 5.051307 TCGCGAAAATGGATGTATCTAAACG 60.051 40.000 6.20 0.00 0.00 3.60
2537 4991 6.127403 GTCGCGAAAATGGATGTATCTAAAC 58.873 40.000 12.06 0.00 0.00 2.01
2538 4992 5.813157 TGTCGCGAAAATGGATGTATCTAAA 59.187 36.000 12.06 0.00 0.00 1.85
2539 4993 5.353111 TGTCGCGAAAATGGATGTATCTAA 58.647 37.500 12.06 0.00 0.00 2.10
2540 4994 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
2541 4995 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
2543 4997 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
2544 4998 3.331150 ACTTGTCGCGAAAATGGATGTA 58.669 40.909 13.05 0.00 0.00 2.29
2545 4999 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
2546 5000 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
2547 5001 5.560966 AATTACTTGTCGCGAAAATGGAT 57.439 34.783 13.05 3.91 0.00 3.41
2548 5002 5.365403 AAATTACTTGTCGCGAAAATGGA 57.635 34.783 13.05 0.56 0.00 3.41
2549 5003 4.259734 CGAAATTACTTGTCGCGAAAATGG 59.740 41.667 13.05 4.35 0.00 3.16
2550 5004 5.076765 TCGAAATTACTTGTCGCGAAAATG 58.923 37.500 13.05 9.32 34.80 2.32
2551 5005 5.272167 TCGAAATTACTTGTCGCGAAAAT 57.728 34.783 13.05 5.74 34.80 1.82
2552 5006 4.712191 TCGAAATTACTTGTCGCGAAAA 57.288 36.364 12.06 12.01 34.80 2.29
2554 5008 3.420799 CGTTCGAAATTACTTGTCGCGAA 60.421 43.478 12.06 0.00 34.80 4.70
2556 5010 2.405736 CGTTCGAAATTACTTGTCGCG 58.594 47.619 0.00 0.00 34.80 5.87
2557 5011 2.409378 TCCGTTCGAAATTACTTGTCGC 59.591 45.455 0.00 0.00 34.80 5.19
2558 5012 3.060363 CCTCCGTTCGAAATTACTTGTCG 59.940 47.826 0.00 0.00 36.12 4.35
2559 5013 3.370061 CCCTCCGTTCGAAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
2561 5015 3.592059 TCCCTCCGTTCGAAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
2562 5016 3.260128 ACTCCCTCCGTTCGAAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
2563 5017 2.830321 ACTCCCTCCGTTCGAAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
2565 5019 4.019174 ACTACTCCCTCCGTTCGAAATTA 58.981 43.478 0.00 0.00 0.00 1.40
2567 5021 2.454538 ACTACTCCCTCCGTTCGAAAT 58.545 47.619 0.00 0.00 0.00 2.17
2568 5022 1.915141 ACTACTCCCTCCGTTCGAAA 58.085 50.000 0.00 0.00 0.00 3.46
2572 5026 2.944349 CTCAGTACTACTCCCTCCGTTC 59.056 54.545 0.00 0.00 0.00 3.95
2573 5027 2.308275 ACTCAGTACTACTCCCTCCGTT 59.692 50.000 0.00 0.00 0.00 4.44
2574 5028 1.914798 ACTCAGTACTACTCCCTCCGT 59.085 52.381 0.00 0.00 0.00 4.69
2576 5030 4.776435 AGTACTCAGTACTACTCCCTCC 57.224 50.000 16.34 0.00 45.99 4.30
2577 5031 6.484364 ACTAGTACTCAGTACTACTCCCTC 57.516 45.833 19.18 0.00 45.99 4.30
2578 5032 9.088987 GTATACTAGTACTCAGTACTACTCCCT 57.911 40.741 19.18 6.77 45.99 4.20
2579 5033 8.026607 CGTATACTAGTACTCAGTACTACTCCC 58.973 44.444 19.18 7.09 45.99 4.30
2580 5034 8.573035 ACGTATACTAGTACTCAGTACTACTCC 58.427 40.741 19.18 6.50 45.99 3.85
2582 5036 8.286800 CGACGTATACTAGTACTCAGTACTACT 58.713 40.741 19.18 13.38 45.99 2.57
2583 5037 7.060174 GCGACGTATACTAGTACTCAGTACTAC 59.940 44.444 19.18 11.73 45.99 2.73
2584 5038 7.078851 GCGACGTATACTAGTACTCAGTACTA 58.921 42.308 21.26 21.26 45.99 1.82
2589 5043 5.648033 TTGCGACGTATACTAGTACTCAG 57.352 43.478 4.31 0.00 0.00 3.35
2590 5044 5.754890 TCATTGCGACGTATACTAGTACTCA 59.245 40.000 4.31 0.00 0.00 3.41
2591 5045 6.220579 TCATTGCGACGTATACTAGTACTC 57.779 41.667 4.31 0.60 0.00 2.59
2595 5049 5.471116 TGGTATCATTGCGACGTATACTAGT 59.529 40.000 0.00 0.00 0.00 2.57
2596 5050 5.934921 TGGTATCATTGCGACGTATACTAG 58.065 41.667 0.56 0.00 0.00 2.57
2597 5051 5.945466 TGGTATCATTGCGACGTATACTA 57.055 39.130 0.56 0.00 0.00 1.82
2598 5052 4.841443 TGGTATCATTGCGACGTATACT 57.159 40.909 0.56 0.00 0.00 2.12
2599 5053 4.326278 CCATGGTATCATTGCGACGTATAC 59.674 45.833 2.57 0.00 0.00 1.47
2600 5054 4.021807 ACCATGGTATCATTGCGACGTATA 60.022 41.667 18.10 0.00 0.00 1.47
2601 5055 3.244078 ACCATGGTATCATTGCGACGTAT 60.244 43.478 18.10 0.00 0.00 3.06
2603 5057 1.134521 ACCATGGTATCATTGCGACGT 60.135 47.619 18.10 0.00 0.00 4.34
2604 5058 1.581934 ACCATGGTATCATTGCGACG 58.418 50.000 18.10 0.00 0.00 5.12
2605 5059 4.377021 TCTTACCATGGTATCATTGCGAC 58.623 43.478 25.12 0.00 0.00 5.19
2606 5060 4.681074 TCTTACCATGGTATCATTGCGA 57.319 40.909 25.12 6.94 0.00 5.10
2607 5061 4.393062 GGATCTTACCATGGTATCATTGCG 59.607 45.833 25.12 8.19 0.00 4.85
2608 5062 4.393062 CGGATCTTACCATGGTATCATTGC 59.607 45.833 25.12 13.94 0.00 3.56
2609 5063 5.793817 TCGGATCTTACCATGGTATCATTG 58.206 41.667 25.12 13.67 0.00 2.82
2610 5064 5.569630 GCTCGGATCTTACCATGGTATCATT 60.570 44.000 25.12 10.66 0.00 2.57
2611 5065 4.081420 GCTCGGATCTTACCATGGTATCAT 60.081 45.833 25.12 18.58 0.00 2.45
2612 5066 3.258372 GCTCGGATCTTACCATGGTATCA 59.742 47.826 25.12 14.73 0.00 2.15
2615 5069 1.968493 GGCTCGGATCTTACCATGGTA 59.032 52.381 21.05 21.05 0.00 3.25
2617 5071 0.758734 TGGCTCGGATCTTACCATGG 59.241 55.000 11.19 11.19 0.00 3.66
2618 5072 2.693069 GATGGCTCGGATCTTACCATG 58.307 52.381 12.67 0.00 41.15 3.66
2619 5073 1.273606 CGATGGCTCGGATCTTACCAT 59.726 52.381 9.02 9.02 43.72 3.55
2621 5075 0.959553 TCGATGGCTCGGATCTTACC 59.040 55.000 6.53 0.00 45.10 2.85
2622 5076 1.609555 AGTCGATGGCTCGGATCTTAC 59.390 52.381 0.00 0.00 45.10 2.34
2636 5117 4.320971 GCGTCCGCATTAGTCGAT 57.679 55.556 6.82 0.00 41.49 3.59
2646 5127 2.277501 GCACATGATTGCGTCCGC 60.278 61.111 4.42 4.42 42.35 5.54
2647 5128 2.404789 GGCACATGATTGCGTCCG 59.595 61.111 0.00 0.00 44.00 4.79
2665 5146 0.041312 CGTCTTGAACAAACTGGGCG 60.041 55.000 0.00 0.00 0.00 6.13
2684 5165 7.432350 AGTGACATTATACTAGTACTACGGC 57.568 40.000 4.31 0.00 0.00 5.68
2762 5288 2.955660 TCCATTGGAGCGACAAGTTTTT 59.044 40.909 0.00 0.00 33.23 1.94
2765 5291 2.086869 CATCCATTGGAGCGACAAGTT 58.913 47.619 11.78 0.00 34.05 2.66
2766 5292 1.003580 ACATCCATTGGAGCGACAAGT 59.996 47.619 11.78 0.00 34.05 3.16
2769 5295 0.324614 ACACATCCATTGGAGCGACA 59.675 50.000 11.78 0.00 34.05 4.35
2770 5296 1.009829 GACACATCCATTGGAGCGAC 58.990 55.000 11.78 0.00 34.05 5.19
2773 5299 2.216898 GCTAGACACATCCATTGGAGC 58.783 52.381 11.78 2.66 34.05 4.70
2774 5300 3.548745 TGCTAGACACATCCATTGGAG 57.451 47.619 11.78 6.13 34.05 3.86
2793 5319 3.937814 TGTATCTGGCACTAACTTGGTG 58.062 45.455 0.97 0.97 37.70 4.17
2796 5322 6.722301 CATCAATGTATCTGGCACTAACTTG 58.278 40.000 0.00 0.00 0.00 3.16
2797 5323 5.297776 GCATCAATGTATCTGGCACTAACTT 59.702 40.000 0.00 0.00 0.00 2.66
2799 5325 4.818546 AGCATCAATGTATCTGGCACTAAC 59.181 41.667 0.00 0.00 0.00 2.34
2800 5326 5.039920 AGCATCAATGTATCTGGCACTAA 57.960 39.130 0.00 0.00 0.00 2.24
2802 5328 3.572632 AGCATCAATGTATCTGGCACT 57.427 42.857 0.00 0.00 0.00 4.40
2803 5329 5.756195 TTTAGCATCAATGTATCTGGCAC 57.244 39.130 0.00 0.00 0.00 5.01
2828 5354 8.495949 GTCTCAAACTTGTTTCTCGAATGAATA 58.504 33.333 0.00 0.00 0.00 1.75
2830 5356 6.315144 TGTCTCAAACTTGTTTCTCGAATGAA 59.685 34.615 0.00 0.00 0.00 2.57
2831 5357 5.815222 TGTCTCAAACTTGTTTCTCGAATGA 59.185 36.000 0.00 0.00 0.00 2.57
2832 5358 6.048073 TGTCTCAAACTTGTTTCTCGAATG 57.952 37.500 0.00 0.00 0.00 2.67
2833 5359 6.316390 ACTTGTCTCAAACTTGTTTCTCGAAT 59.684 34.615 0.00 0.00 0.00 3.34
2835 5361 5.175859 ACTTGTCTCAAACTTGTTTCTCGA 58.824 37.500 0.00 0.00 0.00 4.04
2837 5363 8.520835 AAAAACTTGTCTCAAACTTGTTTCTC 57.479 30.769 0.00 0.00 34.98 2.87
2859 5385 0.941542 CTTGCTGTCCGTCCGAAAAA 59.058 50.000 0.00 0.00 0.00 1.94
2860 5386 0.179067 ACTTGCTGTCCGTCCGAAAA 60.179 50.000 0.00 0.00 0.00 2.29
2861 5387 0.599204 GACTTGCTGTCCGTCCGAAA 60.599 55.000 0.00 0.00 39.69 3.46
2862 5388 1.006571 GACTTGCTGTCCGTCCGAA 60.007 57.895 0.00 0.00 39.69 4.30
2863 5389 0.607217 TAGACTTGCTGTCCGTCCGA 60.607 55.000 6.78 0.00 46.46 4.55
2864 5390 0.179161 CTAGACTTGCTGTCCGTCCG 60.179 60.000 6.78 0.00 46.46 4.79
2865 5391 1.174783 TCTAGACTTGCTGTCCGTCC 58.825 55.000 6.78 0.00 46.46 4.79
2866 5392 3.878103 TCTATCTAGACTTGCTGTCCGTC 59.122 47.826 0.00 0.00 46.46 4.79
2867 5393 3.880490 CTCTATCTAGACTTGCTGTCCGT 59.120 47.826 0.00 0.00 46.46 4.69
2868 5394 3.252215 CCTCTATCTAGACTTGCTGTCCG 59.748 52.174 0.00 0.69 46.46 4.79
2869 5395 4.211920 ACCTCTATCTAGACTTGCTGTCC 58.788 47.826 0.00 0.00 46.46 4.02
2870 5396 5.845391 AACCTCTATCTAGACTTGCTGTC 57.155 43.478 0.00 2.86 45.67 3.51
2871 5397 5.482175 ACAAACCTCTATCTAGACTTGCTGT 59.518 40.000 0.00 0.00 0.00 4.40
2872 5398 5.971763 ACAAACCTCTATCTAGACTTGCTG 58.028 41.667 0.00 0.00 0.00 4.41
2873 5399 6.663953 TGTACAAACCTCTATCTAGACTTGCT 59.336 38.462 0.00 0.00 0.00 3.91
2874 5400 6.864342 TGTACAAACCTCTATCTAGACTTGC 58.136 40.000 0.00 0.00 0.00 4.01
2875 5401 8.687242 TGATGTACAAACCTCTATCTAGACTTG 58.313 37.037 0.00 0.00 0.00 3.16
2876 5402 8.824756 TGATGTACAAACCTCTATCTAGACTT 57.175 34.615 0.00 0.00 0.00 3.01
2877 5403 7.013846 GCTGATGTACAAACCTCTATCTAGACT 59.986 40.741 0.00 0.00 0.00 3.24
2882 5408 4.716784 TGGCTGATGTACAAACCTCTATCT 59.283 41.667 0.00 0.00 0.00 1.98
2897 5423 0.030235 CCATCATTGCGTGGCTGATG 59.970 55.000 10.96 10.96 43.71 3.07
2898 5424 0.107066 TCCATCATTGCGTGGCTGAT 60.107 50.000 3.76 0.00 35.43 2.90
2899 5425 0.107066 ATCCATCATTGCGTGGCTGA 60.107 50.000 3.76 0.00 35.43 4.26
2900 5426 0.030235 CATCCATCATTGCGTGGCTG 59.970 55.000 3.76 1.68 35.43 4.85
2920 5449 3.386768 AGGTGTATGCACGGATCATAC 57.613 47.619 7.89 13.53 46.13 2.39
2933 5462 5.187186 GGATACATGTCCGGATAAGGTGTAT 59.813 44.000 19.83 19.83 35.20 2.29
2955 5484 3.759618 GACGGACCCAACAAAAATATGGA 59.240 43.478 0.00 0.00 36.27 3.41
2960 5489 2.074729 TGGACGGACCCAACAAAAAT 57.925 45.000 0.00 0.00 38.00 1.82
2962 5491 1.323412 CATGGACGGACCCAACAAAA 58.677 50.000 0.00 0.00 40.04 2.44
2964 5493 0.250553 GACATGGACGGACCCAACAA 60.251 55.000 0.00 0.00 40.04 2.83
2965 5494 1.373435 GACATGGACGGACCCAACA 59.627 57.895 0.00 0.00 40.04 3.33
3697 6321 0.904649 TGCAAGTCCATCCTCGACAT 59.095 50.000 0.00 0.00 32.41 3.06
3808 6434 5.822519 TGTTGTCTCAGTTGCAAGTCTAAAT 59.177 36.000 3.08 0.00 0.00 1.40
3955 6584 2.839486 TGCAAGTCCACTCTCGATTT 57.161 45.000 0.00 0.00 0.00 2.17
4038 6673 0.736325 CTCGCAACTAGGGTCCAACG 60.736 60.000 0.00 0.00 0.00 4.10
4085 6722 2.167487 TGCAACTGGGGACAAACTTTTC 59.833 45.455 0.00 0.00 42.06 2.29
4107 6745 1.021202 TTGCAAGTCCACCTTTGACG 58.979 50.000 0.00 0.00 37.80 4.35
4150 6788 1.006102 CACCCTCGACTCGCAACTT 60.006 57.895 0.00 0.00 0.00 2.66
4357 7323 4.539870 CAATTTCACTGTTGACTCGCAAT 58.460 39.130 0.00 0.00 39.03 3.56
4367 7333 2.513753 TCGGGATGCAATTTCACTGTT 58.486 42.857 0.00 0.00 0.00 3.16
5070 8223 3.330267 GACGATGAAGCTTATCCCCATC 58.670 50.000 12.74 12.74 0.00 3.51
5579 8806 2.801679 TCGTTTCGGTTTCGTTTGCTAT 59.198 40.909 0.00 0.00 37.69 2.97
6337 9671 1.806542 AGTTGGCAGACAAACGCATAG 59.193 47.619 0.00 0.00 41.58 2.23
6344 9678 1.601903 CGCAACTAGTTGGCAGACAAA 59.398 47.619 31.42 0.00 41.58 2.83
6449 9832 4.729856 CCACGGAACCGGACGGAC 62.730 72.222 18.80 10.52 44.69 4.79
6452 9835 2.992607 TTTTCCCACGGAACCGGACG 62.993 60.000 9.46 12.72 41.87 4.79
6453 9836 0.607217 ATTTTCCCACGGAACCGGAC 60.607 55.000 9.46 0.76 41.87 4.79
6553 9960 3.670377 GCAACGTGGGGTGCTTCC 61.670 66.667 2.71 0.00 0.00 3.46
6625 10055 6.257411 CCAATGGCGATACTATTCTCATGATC 59.743 42.308 0.00 0.00 0.00 2.92
6682 10112 2.821810 GCAGGCGGAGAAGCTTCC 60.822 66.667 22.81 13.78 37.29 3.46
6692 10122 3.535629 TTGTCAGTCAGGCAGGCGG 62.536 63.158 0.00 0.00 30.49 6.13
6722 10152 3.314331 CTCGATCCCCATCCCCCG 61.314 72.222 0.00 0.00 0.00 5.73
6728 10158 2.808206 GCCCGAACTCGATCCCCAT 61.808 63.158 0.00 0.00 43.02 4.00
6729 10159 3.467226 GCCCGAACTCGATCCCCA 61.467 66.667 0.00 0.00 43.02 4.96
6730 10160 4.587189 CGCCCGAACTCGATCCCC 62.587 72.222 0.00 0.00 43.02 4.81
6731 10161 4.587189 CCGCCCGAACTCGATCCC 62.587 72.222 0.00 0.00 43.02 3.85
6808 10248 4.530857 GGTCCACGGATCCAGCGG 62.531 72.222 13.41 8.65 0.00 5.52
6823 10272 4.109675 CCAAATCCCCGCTCCGGT 62.110 66.667 0.00 0.00 46.80 5.28
6944 10396 2.034687 CTGCCCCAACACTCCCTG 59.965 66.667 0.00 0.00 0.00 4.45
6948 10400 2.203337 TGCACTGCCCCAACACTC 60.203 61.111 0.00 0.00 0.00 3.51
6949 10401 1.705002 TACTGCACTGCCCCAACACT 61.705 55.000 0.00 0.00 0.00 3.55
6950 10402 0.821711 TTACTGCACTGCCCCAACAC 60.822 55.000 0.00 0.00 0.00 3.32
6951 10403 0.106469 TTTACTGCACTGCCCCAACA 60.106 50.000 0.00 0.00 0.00 3.33
6952 10404 0.313987 GTTTACTGCACTGCCCCAAC 59.686 55.000 0.00 0.00 0.00 3.77
6953 10405 0.184933 AGTTTACTGCACTGCCCCAA 59.815 50.000 0.00 0.00 0.00 4.12
6954 10406 0.537143 CAGTTTACTGCACTGCCCCA 60.537 55.000 0.00 0.00 35.52 4.96
6957 10409 0.250727 TCCCAGTTTACTGCACTGCC 60.251 55.000 4.34 0.00 42.47 4.85
6995 10482 7.868906 TTACCTCCTTTTCGAAGAAGAAAAA 57.131 32.000 16.62 0.19 45.78 1.94
6996 10483 7.868906 TTTACCTCCTTTTCGAAGAAGAAAA 57.131 32.000 16.62 5.04 45.90 2.29
6999 10486 6.261603 GGTTTTTACCTCCTTTTCGAAGAAGA 59.738 38.462 16.62 4.67 45.90 2.87
7000 10487 6.038936 TGGTTTTTACCTCCTTTTCGAAGAAG 59.961 38.462 0.00 5.63 45.90 2.85
7002 10489 5.297527 GTGGTTTTTACCTCCTTTTCGAAGA 59.702 40.000 0.00 0.00 0.00 2.87
7005 10492 3.884693 GGTGGTTTTTACCTCCTTTTCGA 59.115 43.478 7.91 0.00 39.61 3.71
7015 10502 1.886542 CAGAGGCAGGTGGTTTTTACC 59.113 52.381 0.00 0.00 38.52 2.85
7019 10506 4.181051 GCAGAGGCAGGTGGTTTT 57.819 55.556 0.00 0.00 40.72 2.43
7037 10524 1.439353 GGCCGTGTGCATCGATTGAT 61.439 55.000 14.18 0.00 43.89 2.57
7039 10526 2.404789 GGCCGTGTGCATCGATTG 59.595 61.111 14.18 0.00 43.89 2.67
7040 10527 3.195002 CGGCCGTGTGCATCGATT 61.195 61.111 19.50 0.00 43.89 3.34
7041 10528 4.451150 ACGGCCGTGTGCATCGAT 62.451 61.111 33.75 0.00 43.89 3.59
7051 10538 0.250124 TTCAGAATTCACACGGCCGT 60.250 50.000 28.70 28.70 0.00 5.68
7052 10539 0.165944 GTTCAGAATTCACACGGCCG 59.834 55.000 26.86 26.86 0.00 6.13
7053 10540 0.165944 CGTTCAGAATTCACACGGCC 59.834 55.000 8.44 0.00 0.00 6.13
7054 10541 0.865769 ACGTTCAGAATTCACACGGC 59.134 50.000 21.08 3.07 35.14 5.68
7055 10542 2.903678 CAACGTTCAGAATTCACACGG 58.096 47.619 21.08 6.65 35.14 4.94
7056 10543 2.298300 GCAACGTTCAGAATTCACACG 58.702 47.619 17.56 17.56 36.91 4.49
7075 10991 1.258197 GGTAATAGTTCGAAGCTGCGC 59.742 52.381 10.01 0.00 0.00 6.09
7097 11013 6.173724 CGTTCCGAAATATAAGTCGTTGAAC 58.826 40.000 14.08 14.08 36.21 3.18
7098 11014 5.289193 CCGTTCCGAAATATAAGTCGTTGAA 59.711 40.000 7.42 3.22 35.48 2.69
7099 11015 4.799949 CCGTTCCGAAATATAAGTCGTTGA 59.200 41.667 7.42 0.00 35.48 3.18
7100 11016 4.799949 TCCGTTCCGAAATATAAGTCGTTG 59.200 41.667 7.42 0.00 35.48 4.10
7101 11017 4.997565 TCCGTTCCGAAATATAAGTCGTT 58.002 39.130 7.42 0.00 35.48 3.85
7102 11018 4.498682 CCTCCGTTCCGAAATATAAGTCGT 60.499 45.833 7.42 0.00 35.48 4.34
7103 11019 3.979495 CCTCCGTTCCGAAATATAAGTCG 59.021 47.826 2.29 2.29 37.01 4.18
7105 11021 3.962718 TCCCTCCGTTCCGAAATATAAGT 59.037 43.478 0.00 0.00 0.00 2.24
7106 11022 4.038883 ACTCCCTCCGTTCCGAAATATAAG 59.961 45.833 0.00 0.00 0.00 1.73
7107 11023 3.962718 ACTCCCTCCGTTCCGAAATATAA 59.037 43.478 0.00 0.00 0.00 0.98
7111 11027 1.755380 CTACTCCCTCCGTTCCGAAAT 59.245 52.381 0.00 0.00 0.00 2.17
7112 11028 1.180029 CTACTCCCTCCGTTCCGAAA 58.820 55.000 0.00 0.00 0.00 3.46
7113 11029 1.318158 GCTACTCCCTCCGTTCCGAA 61.318 60.000 0.00 0.00 0.00 4.30
7115 11031 1.601419 TTGCTACTCCCTCCGTTCCG 61.601 60.000 0.00 0.00 0.00 4.30
7116 11032 0.108281 GTTGCTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
7117 11033 0.896226 AGTTGCTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
7118 11034 2.226962 TAGTTGCTACTCCCTCCGTT 57.773 50.000 3.45 0.00 35.78 4.44
7120 11036 1.822990 TGTTAGTTGCTACTCCCTCCG 59.177 52.381 3.45 0.00 35.78 4.63
7121 11037 3.514309 TCTTGTTAGTTGCTACTCCCTCC 59.486 47.826 3.45 0.00 35.78 4.30
7123 11039 5.026790 AGATCTTGTTAGTTGCTACTCCCT 58.973 41.667 3.45 0.00 35.78 4.20
7124 11040 5.346181 AGATCTTGTTAGTTGCTACTCCC 57.654 43.478 3.45 0.00 35.78 4.30
7125 11041 6.635755 AGAAGATCTTGTTAGTTGCTACTCC 58.364 40.000 14.00 0.00 35.78 3.85
7126 11042 7.958674 CAAGAAGATCTTGTTAGTTGCTACTC 58.041 38.462 16.73 0.00 46.50 2.59
7127 11043 7.897575 CAAGAAGATCTTGTTAGTTGCTACT 57.102 36.000 16.73 6.00 46.50 2.57
7142 11124 3.817647 ACACAGGCTTTGTCAAGAAGATC 59.182 43.478 0.00 0.00 38.16 2.75
7161 11143 1.527311 GTGCTGGAGAGAAACGAACAC 59.473 52.381 0.00 0.00 0.00 3.32
7162 11144 1.412710 AGTGCTGGAGAGAAACGAACA 59.587 47.619 0.00 0.00 0.00 3.18
7163 11145 1.795286 CAGTGCTGGAGAGAAACGAAC 59.205 52.381 0.00 0.00 0.00 3.95
7164 11146 1.686587 TCAGTGCTGGAGAGAAACGAA 59.313 47.619 0.00 0.00 0.00 3.85
7165 11147 1.000163 GTCAGTGCTGGAGAGAAACGA 60.000 52.381 0.00 0.00 0.00 3.85
7166 11148 1.000283 AGTCAGTGCTGGAGAGAAACG 60.000 52.381 0.00 0.00 0.00 3.60
7167 11149 2.829741 AGTCAGTGCTGGAGAGAAAC 57.170 50.000 0.00 0.00 0.00 2.78
7168 11150 3.305403 CGTTAGTCAGTGCTGGAGAGAAA 60.305 47.826 0.00 0.00 0.00 2.52
7172 11154 0.243907 GCGTTAGTCAGTGCTGGAGA 59.756 55.000 0.00 0.00 0.00 3.71
7177 11159 0.951040 GGCAAGCGTTAGTCAGTGCT 60.951 55.000 0.00 0.00 39.89 4.40
7196 11178 0.033796 ACATGCCCTGGGATGAACAG 60.034 55.000 22.53 0.49 45.01 3.16
7197 11179 0.409092 AACATGCCCTGGGATGAACA 59.591 50.000 22.53 4.44 45.01 3.18
7198 11180 1.106285 GAACATGCCCTGGGATGAAC 58.894 55.000 22.53 12.26 45.01 3.18
7200 11182 1.002069 AAGAACATGCCCTGGGATGA 58.998 50.000 22.53 0.00 45.01 2.92
7724 11723 1.675641 AAGCTTGGTGACGATGGCC 60.676 57.895 0.00 0.00 0.00 5.36
7742 11741 4.539083 AACTGGTCCGTGTGCGCA 62.539 61.111 5.66 5.66 36.67 6.09
8009 12014 1.702299 GAAGACGGTGAATGACGCG 59.298 57.895 3.53 3.53 0.00 6.01
8162 12167 2.031516 GGCGGAGATGATCATGGCG 61.032 63.158 14.30 3.02 0.00 5.69
8408 12413 1.908483 GCTGAGGTAGTTCCCCAGG 59.092 63.158 0.00 0.00 36.75 4.45
8411 12416 2.901042 CCGCTGAGGTAGTTCCCC 59.099 66.667 0.00 0.00 36.75 4.81
8537 12542 2.325583 AGACAAAGTTGAAGACGCCA 57.674 45.000 0.00 0.00 0.00 5.69
8552 12557 2.481969 GGCGCAGATCATGAAGTAGACA 60.482 50.000 10.83 0.00 0.00 3.41
8664 12677 6.787957 AGGGAAATAGCTACTGTGGTATGTAT 59.212 38.462 0.00 0.00 31.91 2.29
8665 12678 6.141083 AGGGAAATAGCTACTGTGGTATGTA 58.859 40.000 0.00 0.00 31.91 2.29
8666 12679 4.969359 AGGGAAATAGCTACTGTGGTATGT 59.031 41.667 0.00 0.00 31.91 2.29
8667 12680 5.552870 AGGGAAATAGCTACTGTGGTATG 57.447 43.478 0.00 0.00 31.91 2.39
8790 12815 6.319715 ACTTACAAGAAATTAACCACCCCAT 58.680 36.000 0.00 0.00 0.00 4.00
8819 12844 6.542005 ACCCCATTGTTGTTTCTTTCATTTTC 59.458 34.615 0.00 0.00 0.00 2.29
8887 12912 5.686753 ACCAACCACAAGTACAGTGAAATA 58.313 37.500 17.09 0.00 39.30 1.40
8920 12945 3.565482 CACAGTACAGTTGAAGGCACATT 59.435 43.478 0.00 0.00 0.00 2.71
8921 12946 3.141398 CACAGTACAGTTGAAGGCACAT 58.859 45.455 0.00 0.00 0.00 3.21
8922 12947 2.169561 TCACAGTACAGTTGAAGGCACA 59.830 45.455 0.00 0.00 0.00 4.57
8923 12948 2.833794 TCACAGTACAGTTGAAGGCAC 58.166 47.619 0.00 0.00 0.00 5.01
8924 12949 3.070878 TCATCACAGTACAGTTGAAGGCA 59.929 43.478 0.00 0.00 0.00 4.75
8925 12950 3.433615 GTCATCACAGTACAGTTGAAGGC 59.566 47.826 0.00 0.00 0.00 4.35
8927 12952 3.997021 GGGTCATCACAGTACAGTTGAAG 59.003 47.826 0.00 0.00 0.00 3.02
8929 12954 2.969262 TGGGTCATCACAGTACAGTTGA 59.031 45.455 0.00 0.00 0.00 3.18
8989 13014 1.407989 GGCAGAAGGTTAGCAGCTCAT 60.408 52.381 0.00 0.00 0.00 2.90
9013 13038 4.339530 CGGGAACTCATCTGATAGAACTCA 59.660 45.833 0.00 0.00 0.00 3.41
9064 13134 2.802667 GCGTGCCTGTCAGTATGCG 61.803 63.158 0.00 0.00 34.76 4.73
9084 13154 2.303175 TGGTTAGTTTGTCAAGGTGGC 58.697 47.619 0.00 0.00 0.00 5.01
9116 13186 9.343103 GTAACAATGTACATATCTCGTGATAGG 57.657 37.037 9.21 15.38 41.25 2.57
9191 13264 0.253044 GAAGCATAGTGGGGCACTCA 59.747 55.000 0.00 0.00 41.21 3.41
9229 13302 2.341846 TGTGCGTTCTTTCCTTTCCT 57.658 45.000 0.00 0.00 0.00 3.36
9232 13305 3.859411 TGTTTGTGCGTTCTTTCCTTT 57.141 38.095 0.00 0.00 0.00 3.11
9249 13322 7.141758 TGGGAGAAGAATATAGCTCAATGTT 57.858 36.000 0.00 0.00 0.00 2.71
9252 13325 7.457218 TGAGATGGGAGAAGAATATAGCTCAAT 59.543 37.037 0.00 0.00 0.00 2.57
9253 13326 6.784473 TGAGATGGGAGAAGAATATAGCTCAA 59.216 38.462 0.00 0.00 0.00 3.02
9254 13327 6.318112 TGAGATGGGAGAAGAATATAGCTCA 58.682 40.000 0.00 0.00 0.00 4.26
9255 13328 6.627953 GCTGAGATGGGAGAAGAATATAGCTC 60.628 46.154 0.00 0.00 0.00 4.09
9285 13358 1.594331 GGTCAGGGTGTTGTCTTCAC 58.406 55.000 0.00 0.00 35.36 3.18
9286 13359 0.472471 GGGTCAGGGTGTTGTCTTCA 59.528 55.000 0.00 0.00 0.00 3.02
9314 13387 4.961511 AGCCACGCGCGACTTTGA 62.962 61.111 39.36 0.00 44.76 2.69
9316 13389 4.664677 AGAGCCACGCGCGACTTT 62.665 61.111 39.36 21.60 44.76 2.66
9323 13396 1.710013 TTCTTTTAGAGAGCCACGCG 58.290 50.000 3.53 3.53 35.37 6.01
9340 13413 3.064545 CCGCCTGTCATCTCTTGATTTTC 59.935 47.826 0.00 0.00 36.54 2.29
9346 13419 0.674581 TTGCCGCCTGTCATCTCTTG 60.675 55.000 0.00 0.00 0.00 3.02
9351 13424 0.598065 AGTTTTTGCCGCCTGTCATC 59.402 50.000 0.00 0.00 0.00 2.92
9353 13426 0.749818 TCAGTTTTTGCCGCCTGTCA 60.750 50.000 0.00 0.00 0.00 3.58
9394 13467 6.487668 TGATTGGTGCCAACTGATTAGATATG 59.512 38.462 5.72 0.00 38.88 1.78
9396 13469 6.000246 TGATTGGTGCCAACTGATTAGATA 58.000 37.500 5.72 0.00 38.88 1.98
9502 13579 0.882927 GCGCCCTACTGTGAACAACA 60.883 55.000 0.00 0.00 37.22 3.33
9596 13673 5.091261 ACTTCACTGTCACTTCTTTCACT 57.909 39.130 0.00 0.00 0.00 3.41
9604 13681 5.864474 CGCTATTCTTACTTCACTGTCACTT 59.136 40.000 0.00 0.00 0.00 3.16
9612 13689 1.258197 GGCGCGCTATTCTTACTTCAC 59.742 52.381 32.29 4.57 0.00 3.18
9617 13694 2.157085 GGTAATGGCGCGCTATTCTTAC 59.843 50.000 40.04 31.61 0.00 2.34
9618 13695 2.036733 AGGTAATGGCGCGCTATTCTTA 59.963 45.455 40.04 24.02 0.00 2.10
9619 13696 1.202651 AGGTAATGGCGCGCTATTCTT 60.203 47.619 40.04 25.71 0.00 2.52
9628 13705 3.056107 TGGTAGATATGAGGTAATGGCGC 60.056 47.826 0.00 0.00 0.00 6.53
9650 13727 5.452255 TCGTATAACCTGAGGTTGTATCCT 58.548 41.667 26.38 0.57 46.35 3.24
9722 13800 8.375506 TCTTGAGTATAATCAAACACTGGACTT 58.624 33.333 15.76 0.00 34.02 3.01
9779 13861 4.278419 GGGTGCTGTTTAGTTTTGTCATCT 59.722 41.667 0.00 0.00 0.00 2.90
9780 13862 4.546570 GGGTGCTGTTTAGTTTTGTCATC 58.453 43.478 0.00 0.00 0.00 2.92
9781 13863 3.320826 GGGGTGCTGTTTAGTTTTGTCAT 59.679 43.478 0.00 0.00 0.00 3.06
9782 13864 2.691011 GGGGTGCTGTTTAGTTTTGTCA 59.309 45.455 0.00 0.00 0.00 3.58
9783 13865 2.035449 GGGGGTGCTGTTTAGTTTTGTC 59.965 50.000 0.00 0.00 0.00 3.18
9785 13867 2.035632 TGGGGGTGCTGTTTAGTTTTG 58.964 47.619 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.