Multiple sequence alignment - TraesCS4B01G029400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G029400 chr4B 100.000 4796 0 0 426 5221 21558688 21553893 0.000000e+00 8857
1 TraesCS4B01G029400 chr4B 100.000 139 0 0 1 139 21559113 21558975 1.870000e-64 257
2 TraesCS4B01G029400 chr4D 93.808 3133 137 35 653 3762 11912445 11915543 0.000000e+00 4658
3 TraesCS4B01G029400 chr4D 92.391 1472 66 28 3759 5221 11915703 11917137 0.000000e+00 2056
4 TraesCS4B01G029400 chr4D 88.934 497 38 13 870 1359 51923924 51924410 9.680000e-167 597
5 TraesCS4B01G029400 chr4A 92.903 3100 137 48 649 3717 590593980 590590933 0.000000e+00 4429
6 TraesCS4B01G029400 chr4A 92.373 708 34 10 3759 4464 590590748 590590059 0.000000e+00 990
7 TraesCS4B01G029400 chr4A 90.776 477 33 4 4754 5220 590589238 590588763 1.230000e-175 627


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G029400 chr4B 21553893 21559113 5220 True 4557.000000 8857 100.000000 1 5221 2 chr4B.!!$R1 5220
1 TraesCS4B01G029400 chr4D 11912445 11917137 4692 False 3357.000000 4658 93.099500 653 5221 2 chr4D.!!$F2 4568
2 TraesCS4B01G029400 chr4A 590588763 590593980 5217 True 2015.333333 4429 92.017333 649 5220 3 chr4A.!!$R1 4571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.030908 CATCGAGGTAGGAAGACGCC 59.969 60.0 0.00 0.0 0.00 5.68 F
465 466 0.031616 AGATGAGTGAGGAGGGGGAC 60.032 60.0 0.00 0.0 0.00 4.46 F
1336 1360 0.035739 TTGAACCGTCAACCTAGGGC 59.964 55.0 14.81 0.0 38.88 5.19 F
2276 2311 0.183014 AGCAGGATGATGAAGCCCTG 59.817 55.0 0.00 0.0 46.67 4.45 F
2655 2690 0.326264 AGAGCAAAAGCGATGGGTCT 59.674 50.0 0.00 0.0 33.62 3.85 F
3463 3500 0.836400 ACTTGACCGGACTGTGGGAT 60.836 55.0 9.46 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1367 1391 0.178953 AAAAGGGCTGGTCACTGCAT 60.179 50.000 0.0 0.0 42.66 3.96 R
1562 1586 0.179108 CCAAGTAGCTAGGTCACCGC 60.179 60.000 0.0 0.0 0.00 5.68 R
2687 2722 4.466015 ACGATGGGTAATTTCCTTGCAATT 59.534 37.500 0.0 0.0 0.00 2.32 R
3580 3617 0.101040 CATAAGCCCAACCACATGCG 59.899 55.000 0.0 0.0 0.00 4.73 R
3913 4117 1.000171 GCAAGGCAAAGAAACAGGAGG 60.000 52.381 0.0 0.0 0.00 4.30 R
4886 5649 0.248907 GCGCTGCTCGTATACCTCAA 60.249 55.000 0.0 0.0 41.07 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.247567 AAGCACGGGAAGAACATTGG 58.752 50.000 0.00 0.00 0.00 3.16
22 23 1.212751 GCACGGGAAGAACATTGGC 59.787 57.895 0.00 0.00 0.00 4.52
23 24 1.883021 CACGGGAAGAACATTGGCC 59.117 57.895 0.00 0.00 0.00 5.36
24 25 1.674322 ACGGGAAGAACATTGGCCG 60.674 57.895 0.00 0.00 0.00 6.13
25 26 2.406616 CGGGAAGAACATTGGCCGG 61.407 63.158 0.00 0.00 0.00 6.13
26 27 1.001393 GGGAAGAACATTGGCCGGA 60.001 57.895 5.05 0.00 0.00 5.14
27 28 0.610785 GGGAAGAACATTGGCCGGAA 60.611 55.000 5.05 0.00 0.00 4.30
28 29 1.253100 GGAAGAACATTGGCCGGAAA 58.747 50.000 5.05 0.00 0.00 3.13
29 30 1.616374 GGAAGAACATTGGCCGGAAAA 59.384 47.619 5.05 0.00 0.00 2.29
30 31 2.609491 GGAAGAACATTGGCCGGAAAAC 60.609 50.000 5.05 0.00 0.00 2.43
31 32 1.698506 AGAACATTGGCCGGAAAACA 58.301 45.000 5.05 0.00 0.00 2.83
32 33 1.339929 AGAACATTGGCCGGAAAACAC 59.660 47.619 5.05 0.00 0.00 3.32
33 34 0.391228 AACATTGGCCGGAAAACACC 59.609 50.000 5.05 0.00 0.00 4.16
34 35 1.291906 CATTGGCCGGAAAACACCC 59.708 57.895 5.05 0.00 0.00 4.61
35 36 1.911269 ATTGGCCGGAAAACACCCC 60.911 57.895 5.05 0.00 0.00 4.95
36 37 2.664835 ATTGGCCGGAAAACACCCCA 62.665 55.000 5.05 0.00 0.00 4.96
37 38 2.522193 GGCCGGAAAACACCCCAA 60.522 61.111 5.05 0.00 0.00 4.12
38 39 2.134933 GGCCGGAAAACACCCCAAA 61.135 57.895 5.05 0.00 0.00 3.28
39 40 1.068417 GCCGGAAAACACCCCAAAC 59.932 57.895 5.05 0.00 0.00 2.93
40 41 1.677637 GCCGGAAAACACCCCAAACA 61.678 55.000 5.05 0.00 0.00 2.83
41 42 0.824759 CCGGAAAACACCCCAAACAA 59.175 50.000 0.00 0.00 0.00 2.83
42 43 1.471851 CCGGAAAACACCCCAAACAAC 60.472 52.381 0.00 0.00 0.00 3.32
43 44 1.799548 CGGAAAACACCCCAAACAACG 60.800 52.381 0.00 0.00 0.00 4.10
44 45 1.282817 GAAAACACCCCAAACAACGC 58.717 50.000 0.00 0.00 0.00 4.84
45 46 0.608640 AAAACACCCCAAACAACGCA 59.391 45.000 0.00 0.00 0.00 5.24
46 47 0.174617 AAACACCCCAAACAACGCAG 59.825 50.000 0.00 0.00 0.00 5.18
47 48 0.681564 AACACCCCAAACAACGCAGA 60.682 50.000 0.00 0.00 0.00 4.26
48 49 1.101049 ACACCCCAAACAACGCAGAG 61.101 55.000 0.00 0.00 0.00 3.35
49 50 1.528309 ACCCCAAACAACGCAGAGG 60.528 57.895 0.00 0.00 0.00 3.69
50 51 1.528309 CCCCAAACAACGCAGAGGT 60.528 57.895 0.00 0.00 0.00 3.85
51 52 1.654220 CCCAAACAACGCAGAGGTG 59.346 57.895 0.00 0.00 44.94 4.00
52 53 1.008538 CCAAACAACGCAGAGGTGC 60.009 57.895 0.00 0.00 42.61 5.01
64 65 2.995283 CAGAGGTGCAATCCTTCATCA 58.005 47.619 0.00 0.00 38.02 3.07
65 66 3.552875 CAGAGGTGCAATCCTTCATCAT 58.447 45.455 0.00 0.00 38.02 2.45
66 67 3.952323 CAGAGGTGCAATCCTTCATCATT 59.048 43.478 0.00 0.00 38.02 2.57
67 68 5.128205 CAGAGGTGCAATCCTTCATCATTA 58.872 41.667 0.00 0.00 38.02 1.90
68 69 5.768662 CAGAGGTGCAATCCTTCATCATTAT 59.231 40.000 0.00 0.00 38.02 1.28
69 70 6.264744 CAGAGGTGCAATCCTTCATCATTATT 59.735 38.462 0.00 0.00 38.02 1.40
70 71 6.489361 AGAGGTGCAATCCTTCATCATTATTC 59.511 38.462 0.00 0.00 38.02 1.75
71 72 5.537674 AGGTGCAATCCTTCATCATTATTCC 59.462 40.000 0.00 0.00 33.52 3.01
72 73 5.302568 GGTGCAATCCTTCATCATTATTCCA 59.697 40.000 0.00 0.00 0.00 3.53
73 74 6.444633 GTGCAATCCTTCATCATTATTCCAG 58.555 40.000 0.00 0.00 0.00 3.86
74 75 6.263842 GTGCAATCCTTCATCATTATTCCAGA 59.736 38.462 0.00 0.00 0.00 3.86
75 76 6.489022 TGCAATCCTTCATCATTATTCCAGAG 59.511 38.462 0.00 0.00 0.00 3.35
76 77 6.072064 GCAATCCTTCATCATTATTCCAGAGG 60.072 42.308 0.00 0.00 0.00 3.69
77 78 6.776887 ATCCTTCATCATTATTCCAGAGGT 57.223 37.500 0.00 0.00 0.00 3.85
78 79 6.581388 TCCTTCATCATTATTCCAGAGGTT 57.419 37.500 0.00 0.00 0.00 3.50
79 80 6.973642 TCCTTCATCATTATTCCAGAGGTTT 58.026 36.000 0.00 0.00 0.00 3.27
80 81 6.830324 TCCTTCATCATTATTCCAGAGGTTTG 59.170 38.462 0.00 0.00 0.00 2.93
81 82 6.040166 CCTTCATCATTATTCCAGAGGTTTGG 59.960 42.308 0.00 0.00 39.70 3.28
82 83 6.325993 TCATCATTATTCCAGAGGTTTGGA 57.674 37.500 0.00 0.00 45.34 3.53
90 91 4.292186 TCCAGAGGTTTGGAGAAATCAG 57.708 45.455 0.00 0.00 42.24 2.90
91 92 3.909995 TCCAGAGGTTTGGAGAAATCAGA 59.090 43.478 0.00 0.00 42.24 3.27
92 93 4.006319 CCAGAGGTTTGGAGAAATCAGAC 58.994 47.826 0.00 0.00 40.87 3.51
93 94 4.505566 CCAGAGGTTTGGAGAAATCAGACA 60.506 45.833 0.00 0.00 40.87 3.41
94 95 5.251764 CAGAGGTTTGGAGAAATCAGACAT 58.748 41.667 0.00 0.00 0.00 3.06
95 96 5.353678 CAGAGGTTTGGAGAAATCAGACATC 59.646 44.000 0.00 0.00 32.59 3.06
96 97 5.013495 AGAGGTTTGGAGAAATCAGACATCA 59.987 40.000 0.00 0.00 34.11 3.07
97 98 5.824421 AGGTTTGGAGAAATCAGACATCAT 58.176 37.500 0.00 0.00 0.00 2.45
98 99 5.884792 AGGTTTGGAGAAATCAGACATCATC 59.115 40.000 0.00 0.00 0.00 2.92
99 100 5.220739 GGTTTGGAGAAATCAGACATCATCG 60.221 44.000 0.00 0.00 0.00 3.84
100 101 5.343307 TTGGAGAAATCAGACATCATCGA 57.657 39.130 0.00 0.00 0.00 3.59
101 102 4.941657 TGGAGAAATCAGACATCATCGAG 58.058 43.478 0.00 0.00 0.00 4.04
102 103 4.202192 TGGAGAAATCAGACATCATCGAGG 60.202 45.833 0.00 0.00 0.00 4.63
103 104 4.202202 GGAGAAATCAGACATCATCGAGGT 60.202 45.833 0.00 0.00 0.00 3.85
104 105 5.010112 GGAGAAATCAGACATCATCGAGGTA 59.990 44.000 0.00 0.00 0.00 3.08
105 106 6.083098 AGAAATCAGACATCATCGAGGTAG 57.917 41.667 0.00 0.00 0.00 3.18
106 107 4.862902 AATCAGACATCATCGAGGTAGG 57.137 45.455 0.00 0.00 0.00 3.18
107 108 3.577805 TCAGACATCATCGAGGTAGGA 57.422 47.619 0.00 0.00 0.00 2.94
108 109 3.898482 TCAGACATCATCGAGGTAGGAA 58.102 45.455 0.00 0.00 0.00 3.36
109 110 3.885901 TCAGACATCATCGAGGTAGGAAG 59.114 47.826 0.00 0.00 0.00 3.46
110 111 3.885901 CAGACATCATCGAGGTAGGAAGA 59.114 47.826 0.00 0.00 0.00 2.87
111 112 3.886505 AGACATCATCGAGGTAGGAAGAC 59.113 47.826 0.00 0.00 0.00 3.01
112 113 2.619177 ACATCATCGAGGTAGGAAGACG 59.381 50.000 0.00 0.00 0.00 4.18
113 114 1.022735 TCATCGAGGTAGGAAGACGC 58.977 55.000 0.00 0.00 0.00 5.19
114 115 0.030908 CATCGAGGTAGGAAGACGCC 59.969 60.000 0.00 0.00 0.00 5.68
115 116 0.395311 ATCGAGGTAGGAAGACGCCA 60.395 55.000 0.00 0.00 0.00 5.69
116 117 0.395311 TCGAGGTAGGAAGACGCCAT 60.395 55.000 0.00 0.00 0.00 4.40
117 118 1.134007 TCGAGGTAGGAAGACGCCATA 60.134 52.381 0.00 0.00 0.00 2.74
118 119 1.679680 CGAGGTAGGAAGACGCCATAA 59.320 52.381 0.00 0.00 0.00 1.90
119 120 2.100252 CGAGGTAGGAAGACGCCATAAA 59.900 50.000 0.00 0.00 0.00 1.40
120 121 3.429822 CGAGGTAGGAAGACGCCATAAAA 60.430 47.826 0.00 0.00 0.00 1.52
121 122 3.869832 GAGGTAGGAAGACGCCATAAAAC 59.130 47.826 0.00 0.00 0.00 2.43
122 123 3.262405 AGGTAGGAAGACGCCATAAAACA 59.738 43.478 0.00 0.00 0.00 2.83
123 124 4.080526 AGGTAGGAAGACGCCATAAAACAT 60.081 41.667 0.00 0.00 0.00 2.71
124 125 4.638865 GGTAGGAAGACGCCATAAAACATT 59.361 41.667 0.00 0.00 0.00 2.71
125 126 5.818857 GGTAGGAAGACGCCATAAAACATTA 59.181 40.000 0.00 0.00 0.00 1.90
126 127 6.485648 GGTAGGAAGACGCCATAAAACATTAT 59.514 38.462 0.00 0.00 0.00 1.28
127 128 7.012989 GGTAGGAAGACGCCATAAAACATTATT 59.987 37.037 0.00 0.00 0.00 1.40
128 129 7.404671 AGGAAGACGCCATAAAACATTATTT 57.595 32.000 0.00 0.00 0.00 1.40
129 130 7.480810 AGGAAGACGCCATAAAACATTATTTC 58.519 34.615 0.00 0.00 0.00 2.17
130 131 7.122055 AGGAAGACGCCATAAAACATTATTTCA 59.878 33.333 0.00 0.00 0.00 2.69
131 132 7.757624 GGAAGACGCCATAAAACATTATTTCAA 59.242 33.333 0.00 0.00 0.00 2.69
132 133 8.460831 AAGACGCCATAAAACATTATTTCAAC 57.539 30.769 0.00 0.00 0.00 3.18
133 134 7.598278 AGACGCCATAAAACATTATTTCAACA 58.402 30.769 0.00 0.00 0.00 3.33
134 135 8.250332 AGACGCCATAAAACATTATTTCAACAT 58.750 29.630 0.00 0.00 0.00 2.71
135 136 8.183830 ACGCCATAAAACATTATTTCAACATG 57.816 30.769 0.00 0.00 0.00 3.21
136 137 7.816995 ACGCCATAAAACATTATTTCAACATGT 59.183 29.630 0.00 0.00 32.31 3.21
137 138 8.320295 CGCCATAAAACATTATTTCAACATGTC 58.680 33.333 0.00 0.00 30.58 3.06
138 139 9.149225 GCCATAAAACATTATTTCAACATGTCA 57.851 29.630 0.00 0.00 30.58 3.58
442 443 2.032528 CCACTTCTCAAGCCGCCA 59.967 61.111 0.00 0.00 0.00 5.69
443 444 2.037136 CCACTTCTCAAGCCGCCAG 61.037 63.158 0.00 0.00 0.00 4.85
444 445 1.302033 CACTTCTCAAGCCGCCAGT 60.302 57.895 0.00 0.00 0.00 4.00
445 446 1.302033 ACTTCTCAAGCCGCCAGTG 60.302 57.895 0.00 0.00 0.00 3.66
446 447 1.004560 CTTCTCAAGCCGCCAGTGA 60.005 57.895 0.00 0.00 0.00 3.41
447 448 1.004560 TTCTCAAGCCGCCAGTGAG 60.005 57.895 9.15 9.15 40.15 3.51
448 449 1.471829 TTCTCAAGCCGCCAGTGAGA 61.472 55.000 12.67 12.67 44.60 3.27
449 450 1.220206 CTCAAGCCGCCAGTGAGAT 59.780 57.895 9.65 0.00 41.08 2.75
450 451 1.078918 TCAAGCCGCCAGTGAGATG 60.079 57.895 0.00 0.00 0.00 2.90
451 452 1.078918 CAAGCCGCCAGTGAGATGA 60.079 57.895 0.00 0.00 0.00 2.92
452 453 1.088340 CAAGCCGCCAGTGAGATGAG 61.088 60.000 0.00 0.00 0.00 2.90
453 454 1.548357 AAGCCGCCAGTGAGATGAGT 61.548 55.000 0.00 0.00 0.00 3.41
454 455 1.812922 GCCGCCAGTGAGATGAGTG 60.813 63.158 0.00 0.00 0.00 3.51
455 456 1.893062 CCGCCAGTGAGATGAGTGA 59.107 57.895 0.00 0.00 0.00 3.41
456 457 0.179116 CCGCCAGTGAGATGAGTGAG 60.179 60.000 0.00 0.00 0.00 3.51
457 458 0.179116 CGCCAGTGAGATGAGTGAGG 60.179 60.000 0.00 0.00 0.00 3.86
458 459 1.189752 GCCAGTGAGATGAGTGAGGA 58.810 55.000 0.00 0.00 0.00 3.71
459 460 1.136695 GCCAGTGAGATGAGTGAGGAG 59.863 57.143 0.00 0.00 0.00 3.69
460 461 1.755959 CCAGTGAGATGAGTGAGGAGG 59.244 57.143 0.00 0.00 0.00 4.30
461 462 1.755959 CAGTGAGATGAGTGAGGAGGG 59.244 57.143 0.00 0.00 0.00 4.30
462 463 1.118838 GTGAGATGAGTGAGGAGGGG 58.881 60.000 0.00 0.00 0.00 4.79
463 464 0.031716 TGAGATGAGTGAGGAGGGGG 60.032 60.000 0.00 0.00 0.00 5.40
464 465 0.263172 GAGATGAGTGAGGAGGGGGA 59.737 60.000 0.00 0.00 0.00 4.81
465 466 0.031616 AGATGAGTGAGGAGGGGGAC 60.032 60.000 0.00 0.00 0.00 4.46
466 467 0.325671 GATGAGTGAGGAGGGGGACA 60.326 60.000 0.00 0.00 0.00 4.02
467 468 0.119155 ATGAGTGAGGAGGGGGACAA 59.881 55.000 0.00 0.00 0.00 3.18
468 469 0.545309 TGAGTGAGGAGGGGGACAAG 60.545 60.000 0.00 0.00 0.00 3.16
469 470 1.229658 AGTGAGGAGGGGGACAAGG 60.230 63.158 0.00 0.00 0.00 3.61
470 471 2.610859 TGAGGAGGGGGACAAGGC 60.611 66.667 0.00 0.00 0.00 4.35
471 472 3.787001 GAGGAGGGGGACAAGGCG 61.787 72.222 0.00 0.00 0.00 5.52
480 481 4.025401 GACAAGGCGGCGGTGTTG 62.025 66.667 19.49 13.58 0.00 3.33
481 482 4.555709 ACAAGGCGGCGGTGTTGA 62.556 61.111 9.78 0.00 0.00 3.18
482 483 3.726517 CAAGGCGGCGGTGTTGAG 61.727 66.667 9.78 0.00 0.00 3.02
486 487 4.373116 GCGGCGGTGTTGAGGAGA 62.373 66.667 9.78 0.00 0.00 3.71
487 488 2.432628 CGGCGGTGTTGAGGAGAC 60.433 66.667 0.00 0.00 0.00 3.36
488 489 2.741092 GGCGGTGTTGAGGAGACA 59.259 61.111 0.00 0.00 0.00 3.41
489 490 1.296715 GGCGGTGTTGAGGAGACAT 59.703 57.895 0.00 0.00 0.00 3.06
490 491 0.741221 GGCGGTGTTGAGGAGACATC 60.741 60.000 0.00 0.00 0.00 3.06
491 492 0.247736 GCGGTGTTGAGGAGACATCT 59.752 55.000 0.00 0.00 0.00 2.90
492 493 1.476891 GCGGTGTTGAGGAGACATCTA 59.523 52.381 0.00 0.00 0.00 1.98
493 494 2.480416 GCGGTGTTGAGGAGACATCTAG 60.480 54.545 0.00 0.00 0.00 2.43
494 495 3.017442 CGGTGTTGAGGAGACATCTAGA 58.983 50.000 0.00 0.00 0.00 2.43
495 496 3.444034 CGGTGTTGAGGAGACATCTAGAA 59.556 47.826 0.00 0.00 0.00 2.10
496 497 4.098654 CGGTGTTGAGGAGACATCTAGAAT 59.901 45.833 0.00 0.00 0.00 2.40
497 498 5.394663 CGGTGTTGAGGAGACATCTAGAATT 60.395 44.000 0.00 0.00 0.00 2.17
498 499 6.183360 CGGTGTTGAGGAGACATCTAGAATTA 60.183 42.308 0.00 0.00 0.00 1.40
499 500 7.206687 GGTGTTGAGGAGACATCTAGAATTAG 58.793 42.308 0.00 0.00 0.00 1.73
500 501 7.206687 GTGTTGAGGAGACATCTAGAATTAGG 58.793 42.308 0.00 0.00 0.00 2.69
501 502 6.325028 TGTTGAGGAGACATCTAGAATTAGGG 59.675 42.308 0.00 0.00 0.00 3.53
502 503 6.281190 TGAGGAGACATCTAGAATTAGGGA 57.719 41.667 0.00 0.00 0.00 4.20
503 504 6.683537 TGAGGAGACATCTAGAATTAGGGAA 58.316 40.000 0.00 0.00 0.00 3.97
504 505 6.551601 TGAGGAGACATCTAGAATTAGGGAAC 59.448 42.308 0.00 0.00 0.00 3.62
505 506 5.536916 AGGAGACATCTAGAATTAGGGAACG 59.463 44.000 0.00 0.00 0.00 3.95
506 507 5.279056 GGAGACATCTAGAATTAGGGAACGG 60.279 48.000 0.00 0.00 0.00 4.44
507 508 4.589374 AGACATCTAGAATTAGGGAACGGG 59.411 45.833 0.00 0.00 0.00 5.28
508 509 3.646637 ACATCTAGAATTAGGGAACGGGG 59.353 47.826 0.00 0.00 0.00 5.73
509 510 3.693526 TCTAGAATTAGGGAACGGGGA 57.306 47.619 0.00 0.00 0.00 4.81
510 511 3.303049 TCTAGAATTAGGGAACGGGGAC 58.697 50.000 0.00 0.00 0.00 4.46
523 524 3.875865 GGGGACGCTATGTTCCTTT 57.124 52.632 0.00 0.00 46.70 3.11
524 525 2.124277 GGGGACGCTATGTTCCTTTT 57.876 50.000 0.00 0.00 46.70 2.27
525 526 2.443416 GGGGACGCTATGTTCCTTTTT 58.557 47.619 0.00 0.00 46.70 1.94
579 580 6.745159 TTTAACTTAAGGATACAATGCGCA 57.255 33.333 14.96 14.96 41.41 6.09
580 581 6.745159 TTAACTTAAGGATACAATGCGCAA 57.255 33.333 17.11 0.00 41.41 4.85
581 582 5.637006 AACTTAAGGATACAATGCGCAAA 57.363 34.783 17.11 0.00 41.41 3.68
582 583 5.235305 ACTTAAGGATACAATGCGCAAAG 57.765 39.130 17.11 13.08 41.41 2.77
583 584 4.700213 ACTTAAGGATACAATGCGCAAAGT 59.300 37.500 17.11 18.79 41.41 2.66
584 585 3.492421 AAGGATACAATGCGCAAAGTG 57.508 42.857 17.11 15.90 41.41 3.16
585 586 2.710377 AGGATACAATGCGCAAAGTGA 58.290 42.857 17.11 5.77 41.41 3.41
586 587 3.282021 AGGATACAATGCGCAAAGTGAT 58.718 40.909 17.11 10.16 41.41 3.06
587 588 3.696051 AGGATACAATGCGCAAAGTGATT 59.304 39.130 17.11 0.00 41.41 2.57
588 589 4.158394 AGGATACAATGCGCAAAGTGATTT 59.842 37.500 17.11 0.00 41.41 2.17
589 590 4.864247 GGATACAATGCGCAAAGTGATTTT 59.136 37.500 17.11 0.00 0.00 1.82
590 591 5.348451 GGATACAATGCGCAAAGTGATTTTT 59.652 36.000 17.11 0.00 0.00 1.94
613 614 8.574196 TTTTTAGAGCAAGCAAAGTGAAATAC 57.426 30.769 0.00 0.00 0.00 1.89
614 615 6.875948 TTAGAGCAAGCAAAGTGAAATACA 57.124 33.333 0.00 0.00 0.00 2.29
615 616 5.772825 AGAGCAAGCAAAGTGAAATACAA 57.227 34.783 0.00 0.00 0.00 2.41
616 617 6.147864 AGAGCAAGCAAAGTGAAATACAAA 57.852 33.333 0.00 0.00 0.00 2.83
617 618 6.211515 AGAGCAAGCAAAGTGAAATACAAAG 58.788 36.000 0.00 0.00 0.00 2.77
618 619 6.039717 AGAGCAAGCAAAGTGAAATACAAAGA 59.960 34.615 0.00 0.00 0.00 2.52
619 620 6.752168 AGCAAGCAAAGTGAAATACAAAGAT 58.248 32.000 0.00 0.00 0.00 2.40
620 621 6.643770 AGCAAGCAAAGTGAAATACAAAGATG 59.356 34.615 0.00 0.00 0.00 2.90
621 622 6.617105 GCAAGCAAAGTGAAATACAAAGATGC 60.617 38.462 0.00 0.00 0.00 3.91
622 623 6.088016 AGCAAAGTGAAATACAAAGATGCA 57.912 33.333 0.00 0.00 32.46 3.96
623 624 6.514947 AGCAAAGTGAAATACAAAGATGCAA 58.485 32.000 0.00 0.00 32.46 4.08
624 625 7.156673 AGCAAAGTGAAATACAAAGATGCAAT 58.843 30.769 0.00 0.00 32.46 3.56
625 626 7.658575 AGCAAAGTGAAATACAAAGATGCAATT 59.341 29.630 0.00 0.00 32.46 2.32
626 627 7.953710 GCAAAGTGAAATACAAAGATGCAATTC 59.046 33.333 0.00 0.00 0.00 2.17
627 628 8.437742 CAAAGTGAAATACAAAGATGCAATTCC 58.562 33.333 0.00 0.00 0.00 3.01
628 629 7.472334 AGTGAAATACAAAGATGCAATTCCT 57.528 32.000 0.00 0.00 0.00 3.36
629 630 7.542025 AGTGAAATACAAAGATGCAATTCCTC 58.458 34.615 0.00 0.00 0.00 3.71
630 631 7.177216 AGTGAAATACAAAGATGCAATTCCTCA 59.823 33.333 0.00 0.00 0.00 3.86
631 632 7.274250 GTGAAATACAAAGATGCAATTCCTCAC 59.726 37.037 0.00 0.00 0.00 3.51
632 633 7.177216 TGAAATACAAAGATGCAATTCCTCACT 59.823 33.333 0.00 0.00 0.00 3.41
633 634 7.472334 AATACAAAGATGCAATTCCTCACTT 57.528 32.000 0.00 0.00 0.00 3.16
634 635 5.382618 ACAAAGATGCAATTCCTCACTTC 57.617 39.130 0.00 0.00 0.00 3.01
635 636 5.075493 ACAAAGATGCAATTCCTCACTTCT 58.925 37.500 0.00 0.00 0.00 2.85
636 637 5.537674 ACAAAGATGCAATTCCTCACTTCTT 59.462 36.000 0.00 0.00 0.00 2.52
637 638 6.041296 ACAAAGATGCAATTCCTCACTTCTTT 59.959 34.615 0.00 0.00 37.13 2.52
638 639 6.661304 AAGATGCAATTCCTCACTTCTTTT 57.339 33.333 0.00 0.00 0.00 2.27
639 640 6.661304 AGATGCAATTCCTCACTTCTTTTT 57.339 33.333 0.00 0.00 0.00 1.94
675 676 1.097232 CATTCCTCGCATTTCTGCCA 58.903 50.000 0.00 0.00 46.07 4.92
676 677 1.679680 CATTCCTCGCATTTCTGCCAT 59.320 47.619 0.00 0.00 46.07 4.40
683 684 1.334869 CGCATTTCTGCCATAGTTCCC 59.665 52.381 0.00 0.00 46.07 3.97
755 756 2.444256 GCCCGCCTACCATCTTCCT 61.444 63.158 0.00 0.00 0.00 3.36
762 763 2.685388 GCCTACCATCTTCCTGCTTTTC 59.315 50.000 0.00 0.00 0.00 2.29
832 841 1.145377 ACACGACGGCTTTGTTCCT 59.855 52.632 0.00 0.00 0.00 3.36
876 890 1.082431 CACCGCATCGCACGAAAAA 60.082 52.632 0.00 0.00 0.00 1.94
959 974 1.301009 GATCGATCTTCCGTGGCCC 60.301 63.158 18.29 0.00 0.00 5.80
960 975 2.717139 GATCGATCTTCCGTGGCCCC 62.717 65.000 18.29 0.00 0.00 5.80
1085 1100 1.078656 AGGTGAGGAGCTCTTCTTCCT 59.921 52.381 25.30 25.30 31.17 3.36
1086 1101 1.480545 GGTGAGGAGCTCTTCTTCCTC 59.519 57.143 24.46 17.09 46.56 3.71
1090 1105 0.618968 GGAGCTCTTCTTCCTCCCCA 60.619 60.000 14.64 0.00 39.36 4.96
1091 1106 1.506025 GAGCTCTTCTTCCTCCCCAT 58.494 55.000 6.43 0.00 0.00 4.00
1140 1156 3.322254 AGATCAGATTAAGATCCGCGGTT 59.678 43.478 27.15 18.42 42.19 4.44
1298 1321 4.008933 GTCCCTCGTGCTGCCAGT 62.009 66.667 0.00 0.00 0.00 4.00
1299 1322 4.007644 TCCCTCGTGCTGCCAGTG 62.008 66.667 0.00 0.00 0.00 3.66
1336 1360 0.035739 TTGAACCGTCAACCTAGGGC 59.964 55.000 14.81 0.00 38.88 5.19
1344 1368 0.334676 TCAACCTAGGGCAATTGGGG 59.665 55.000 14.81 0.00 0.00 4.96
1362 1386 4.710324 TGGGGTTAGAACTTACAACTGTG 58.290 43.478 0.00 0.00 0.00 3.66
1364 1388 4.445305 GGGGTTAGAACTTACAACTGTGGT 60.445 45.833 0.00 0.00 0.00 4.16
1365 1389 5.221702 GGGGTTAGAACTTACAACTGTGGTA 60.222 44.000 0.00 0.00 0.00 3.25
1367 1391 6.239402 GGGTTAGAACTTACAACTGTGGTAGA 60.239 42.308 0.00 0.00 0.00 2.59
1368 1392 7.384477 GGTTAGAACTTACAACTGTGGTAGAT 58.616 38.462 0.00 0.00 0.00 1.98
1369 1393 7.331193 GGTTAGAACTTACAACTGTGGTAGATG 59.669 40.741 0.00 0.00 35.48 2.90
1370 1394 5.238583 AGAACTTACAACTGTGGTAGATGC 58.761 41.667 0.00 0.00 32.81 3.91
1371 1395 4.617253 ACTTACAACTGTGGTAGATGCA 57.383 40.909 0.00 0.00 32.81 3.96
1395 1419 2.893489 GACCAGCCCTTTTGTTCTTGAT 59.107 45.455 0.00 0.00 0.00 2.57
1421 1445 8.350722 TGAGTAAGTACGATCTTGATATGGAAC 58.649 37.037 0.00 0.00 0.00 3.62
1464 1488 9.051027 CGTGTATTTAGATTTAACTGCAAAGTG 57.949 33.333 0.00 0.00 0.00 3.16
1465 1489 9.893305 GTGTATTTAGATTTAACTGCAAAGTGT 57.107 29.630 0.00 0.00 0.00 3.55
1498 1522 3.578282 TGATGTGGCATGGTAGTCGATAT 59.422 43.478 0.00 0.00 0.00 1.63
1509 1533 4.038361 GGTAGTCGATATGCTGATATGCG 58.962 47.826 0.00 0.00 35.36 4.73
1548 1572 1.078848 AGTTCGGCCACTCAGATGC 60.079 57.895 2.24 0.00 0.00 3.91
1562 1586 3.838120 TCAGATGCGCGAATTAGGATAG 58.162 45.455 12.10 0.00 0.00 2.08
1584 1608 2.756760 CGGTGACCTAGCTACTTGGTAA 59.243 50.000 0.00 0.00 39.48 2.85
1623 1647 3.005684 TGACTGACCCACATTGCAATTTC 59.994 43.478 9.83 2.33 0.00 2.17
1639 1663 4.470462 CAATTTCCTCTTCTGTTTGCTCG 58.530 43.478 0.00 0.00 0.00 5.03
1643 1667 1.065854 CCTCTTCTGTTTGCTCGGGAT 60.066 52.381 0.00 0.00 0.00 3.85
1647 1671 0.250234 TCTGTTTGCTCGGGATCCTG 59.750 55.000 15.09 15.09 0.00 3.86
1717 1741 1.133915 TGGACCCGATTTATTCTGGCC 60.134 52.381 0.00 0.00 32.16 5.36
1747 1771 1.408683 GCACAATATCACCCTGCCTCA 60.409 52.381 0.00 0.00 0.00 3.86
1881 1909 6.392625 TGAATCGAGAGGGTTAGTAATGAG 57.607 41.667 0.00 0.00 0.00 2.90
1943 1975 4.402155 CAGCAGCACATTTAATAAAGGGGA 59.598 41.667 3.64 0.00 0.00 4.81
2041 2074 2.028925 GTTGCCAAACCCTTGCGG 59.971 61.111 0.00 0.00 37.81 5.69
2103 2138 8.408601 AGGATAATTACTGCTGTGCTTATTTTG 58.591 33.333 6.48 0.00 0.00 2.44
2121 2156 9.132521 CTTATTTTGTGATTTTCAGATGTGGTC 57.867 33.333 0.00 0.00 0.00 4.02
2127 2162 6.434965 TGTGATTTTCAGATGTGGTCAATCAT 59.565 34.615 12.29 0.00 0.00 2.45
2138 2173 7.660617 AGATGTGGTCAATCATATAGCTTCTTG 59.339 37.037 0.00 0.00 0.00 3.02
2195 2230 2.443255 ACCTGTTCCCTCTGTTCATGTT 59.557 45.455 0.00 0.00 0.00 2.71
2276 2311 0.183014 AGCAGGATGATGAAGCCCTG 59.817 55.000 0.00 0.00 46.67 4.45
2390 2425 1.064654 GAGAAGGCGGATGCAAATGTC 59.935 52.381 0.00 0.00 45.35 3.06
2420 2455 1.751733 CGGGACCAAATGATCATGGCT 60.752 52.381 14.17 3.35 40.51 4.75
2566 2601 6.346896 AGAGGTATTTACTTTTTAGGCTCGG 58.653 40.000 0.00 0.00 0.00 4.63
2647 2682 1.128321 GCTTCTGAGAGAGCAAAAGCG 59.872 52.381 10.38 0.00 31.00 4.68
2655 2690 0.326264 AGAGCAAAAGCGATGGGTCT 59.674 50.000 0.00 0.00 33.62 3.85
2687 2722 5.538053 TCAAAAGCAAGGGATCAATTGTACA 59.462 36.000 5.13 0.00 0.00 2.90
2707 2742 5.760484 ACAATTGCAAGGAAATTACCCAT 57.240 34.783 4.94 0.00 0.00 4.00
2884 2919 8.103935 CCAGAGAAAAGAAAGTTCCCTAATAGT 58.896 37.037 0.00 0.00 0.00 2.12
2905 2940 6.324601 AGTGAGAATTTGGAAGATCCTGAT 57.675 37.500 0.00 0.00 37.46 2.90
3055 3092 7.281841 TGATGTATGATCCAATTCAGTAGCAA 58.718 34.615 0.00 0.00 0.00 3.91
3463 3500 0.836400 ACTTGACCGGACTGTGGGAT 60.836 55.000 9.46 0.00 0.00 3.85
3502 3539 2.292016 TGTAAATGGTGCTGTGGAAACG 59.708 45.455 0.00 0.00 0.00 3.60
3505 3542 1.795170 ATGGTGCTGTGGAAACGTGC 61.795 55.000 0.00 0.00 0.00 5.34
3514 3551 3.119096 GAAACGTGCGGGGAGAGC 61.119 66.667 0.00 0.00 0.00 4.09
3547 3584 6.539649 TTTGACAAGTACCTCAATTTCTCG 57.460 37.500 0.00 0.00 0.00 4.04
3580 3617 9.736023 AATATTTCGCAGAATTTTGATCCTAAC 57.264 29.630 0.00 0.00 45.90 2.34
3684 3721 1.808945 GCAGAACATGGTGAGTTGGAG 59.191 52.381 0.00 0.00 0.00 3.86
3688 3725 5.114780 CAGAACATGGTGAGTTGGAGATAG 58.885 45.833 0.00 0.00 0.00 2.08
3726 3763 3.412237 TTACCTTTACTGTGCCCACTC 57.588 47.619 0.00 0.00 0.00 3.51
3732 3769 1.717032 TACTGTGCCCACTCTTCTGT 58.283 50.000 0.00 0.00 0.00 3.41
3740 3777 1.605712 CCCACTCTTCTGTCCGTCAAC 60.606 57.143 0.00 0.00 0.00 3.18
3757 3794 3.375299 GTCAACTGTTTTCTGCACTGTCT 59.625 43.478 0.00 0.00 0.00 3.41
3790 3994 8.025445 GCCTCATAATAATTCATTGGTAGCAAG 58.975 37.037 13.51 5.75 0.00 4.01
3809 4013 1.108776 GTGTAGGATCTGCCACCGTA 58.891 55.000 0.00 0.00 40.02 4.02
3913 4117 2.076863 CCGAATCCCAAGTCTTGACAC 58.923 52.381 14.42 0.70 0.00 3.67
3914 4118 2.076863 CGAATCCCAAGTCTTGACACC 58.923 52.381 14.42 0.00 0.00 4.16
3915 4119 2.289694 CGAATCCCAAGTCTTGACACCT 60.290 50.000 14.42 0.00 0.00 4.00
3916 4120 3.339141 GAATCCCAAGTCTTGACACCTC 58.661 50.000 14.42 0.85 0.00 3.85
3980 4184 1.228154 GTGGAAACTGGGGACGCTT 60.228 57.895 0.00 0.00 0.00 4.68
4047 4251 0.324923 ATCATGGCATGTGCTTGGGT 60.325 50.000 25.62 0.00 41.70 4.51
4187 4391 2.599082 GCAGTACATCAACTACGAGCAC 59.401 50.000 0.00 0.00 0.00 4.40
4233 4437 5.201243 TCAGTCAATAGGCAGTAGCTAGAA 58.799 41.667 0.00 0.00 41.70 2.10
4234 4438 5.300539 TCAGTCAATAGGCAGTAGCTAGAAG 59.699 44.000 0.00 0.00 41.70 2.85
4235 4439 5.300539 CAGTCAATAGGCAGTAGCTAGAAGA 59.699 44.000 0.00 0.00 41.70 2.87
4236 4440 5.534654 AGTCAATAGGCAGTAGCTAGAAGAG 59.465 44.000 0.00 0.00 41.70 2.85
4237 4441 4.830046 TCAATAGGCAGTAGCTAGAAGAGG 59.170 45.833 0.00 0.00 41.70 3.69
4262 4466 2.391616 TCGCTTCGACAGGACTACTA 57.608 50.000 0.00 0.00 0.00 1.82
4270 4474 6.569994 GCTTCGACAGGACTACTAAAGAAAGA 60.570 42.308 0.00 0.00 0.00 2.52
4287 4491 4.402474 AGAAAGAAAGTGTTTCCCTGTTGG 59.598 41.667 0.00 0.00 40.54 3.77
4292 4496 3.208747 AGTGTTTCCCTGTTGGTAGTG 57.791 47.619 0.00 0.00 34.77 2.74
4379 4587 0.597898 GTAGCTTCCTCGCCCGATTC 60.598 60.000 0.00 0.00 0.00 2.52
4401 4609 0.609406 TGTGCTGCCTCGACTAGTCT 60.609 55.000 20.34 0.00 0.00 3.24
4498 5128 4.989279 ATGTTTCTGAATATGTGGTGGC 57.011 40.909 0.00 0.00 0.00 5.01
4558 5203 6.572167 TGTGTCATTATTTCTTCATGCACA 57.428 33.333 0.00 0.00 34.99 4.57
4613 5260 7.786030 TGGATGTCCAAAAGTTCAAAATGTTA 58.214 30.769 0.00 0.00 44.35 2.41
4681 5334 4.082463 CCAATAATACACAAAACACCGCCT 60.082 41.667 0.00 0.00 0.00 5.52
4760 5523 4.836125 AGTACACATTCCACAGCAAAAG 57.164 40.909 0.00 0.00 0.00 2.27
4786 5549 1.569708 AAACAATTGCAAGCACACCG 58.430 45.000 4.94 0.00 0.00 4.94
4862 5625 9.590451 TCTCATGGCAAATTTATTCATTTCTTC 57.410 29.630 0.00 0.00 0.00 2.87
4886 5649 5.588240 TCATCAGTACGCGAGACATTATTT 58.412 37.500 15.93 0.00 0.00 1.40
4938 5702 1.628846 CACCACCCTGTATATAGCCCC 59.371 57.143 0.00 0.00 0.00 5.80
4987 5751 0.461961 GGTAAGCACCGCTGAGATCT 59.538 55.000 0.00 0.00 39.62 2.75
4995 5759 0.179116 CCGCTGAGATCTGACACCAG 60.179 60.000 0.00 1.50 41.74 4.00
5004 5768 2.103537 TCTGACACCAGACGTATCGA 57.896 50.000 0.00 0.00 44.01 3.59
5017 5781 4.861210 GACGTATCGATGTCTCAAAGGAT 58.139 43.478 8.54 0.00 38.40 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.432444 CCAATGTTCTTCCCGTGCTTA 58.568 47.619 0.00 0.00 0.00 3.09
3 4 1.244019 GCCAATGTTCTTCCCGTGCT 61.244 55.000 0.00 0.00 0.00 4.40
4 5 1.212751 GCCAATGTTCTTCCCGTGC 59.787 57.895 0.00 0.00 0.00 5.34
5 6 1.883021 GGCCAATGTTCTTCCCGTG 59.117 57.895 0.00 0.00 0.00 4.94
6 7 1.674322 CGGCCAATGTTCTTCCCGT 60.674 57.895 2.24 0.00 0.00 5.28
8 9 0.610785 TTCCGGCCAATGTTCTTCCC 60.611 55.000 2.24 0.00 0.00 3.97
9 10 1.253100 TTTCCGGCCAATGTTCTTCC 58.747 50.000 2.24 0.00 0.00 3.46
10 11 2.035321 TGTTTTCCGGCCAATGTTCTTC 59.965 45.455 2.24 0.00 0.00 2.87
11 12 2.035632 TGTTTTCCGGCCAATGTTCTT 58.964 42.857 2.24 0.00 0.00 2.52
12 13 1.339929 GTGTTTTCCGGCCAATGTTCT 59.660 47.619 2.24 0.00 0.00 3.01
13 14 1.604438 GGTGTTTTCCGGCCAATGTTC 60.604 52.381 2.24 0.00 0.00 3.18
14 15 0.391228 GGTGTTTTCCGGCCAATGTT 59.609 50.000 2.24 0.00 0.00 2.71
15 16 1.468506 GGGTGTTTTCCGGCCAATGT 61.469 55.000 2.24 0.00 0.00 2.71
16 17 1.291906 GGGTGTTTTCCGGCCAATG 59.708 57.895 2.24 0.00 0.00 2.82
17 18 1.911269 GGGGTGTTTTCCGGCCAAT 60.911 57.895 2.24 0.00 0.00 3.16
18 19 2.522193 GGGGTGTTTTCCGGCCAA 60.522 61.111 2.24 0.00 0.00 4.52
19 20 2.873557 TTTGGGGTGTTTTCCGGCCA 62.874 55.000 2.24 0.00 0.00 5.36
20 21 2.134933 TTTGGGGTGTTTTCCGGCC 61.135 57.895 0.00 0.00 0.00 6.13
21 22 1.068417 GTTTGGGGTGTTTTCCGGC 59.932 57.895 0.00 0.00 0.00 6.13
22 23 0.824759 TTGTTTGGGGTGTTTTCCGG 59.175 50.000 0.00 0.00 0.00 5.14
23 24 1.799548 CGTTGTTTGGGGTGTTTTCCG 60.800 52.381 0.00 0.00 0.00 4.30
24 25 1.929230 CGTTGTTTGGGGTGTTTTCC 58.071 50.000 0.00 0.00 0.00 3.13
25 26 1.282817 GCGTTGTTTGGGGTGTTTTC 58.717 50.000 0.00 0.00 0.00 2.29
26 27 0.608640 TGCGTTGTTTGGGGTGTTTT 59.391 45.000 0.00 0.00 0.00 2.43
27 28 0.174617 CTGCGTTGTTTGGGGTGTTT 59.825 50.000 0.00 0.00 0.00 2.83
28 29 0.681564 TCTGCGTTGTTTGGGGTGTT 60.682 50.000 0.00 0.00 0.00 3.32
29 30 1.077357 TCTGCGTTGTTTGGGGTGT 60.077 52.632 0.00 0.00 0.00 4.16
30 31 1.654220 CTCTGCGTTGTTTGGGGTG 59.346 57.895 0.00 0.00 0.00 4.61
31 32 1.528309 CCTCTGCGTTGTTTGGGGT 60.528 57.895 0.00 0.00 0.00 4.95
32 33 1.528309 ACCTCTGCGTTGTTTGGGG 60.528 57.895 0.00 0.00 0.00 4.96
33 34 1.654220 CACCTCTGCGTTGTTTGGG 59.346 57.895 0.00 0.00 0.00 4.12
34 35 1.008538 GCACCTCTGCGTTGTTTGG 60.009 57.895 0.00 0.00 32.44 3.28
35 36 4.614673 GCACCTCTGCGTTGTTTG 57.385 55.556 0.00 0.00 32.44 2.93
43 44 1.674962 GATGAAGGATTGCACCTCTGC 59.325 52.381 0.00 0.00 44.52 4.26
44 45 2.995283 TGATGAAGGATTGCACCTCTG 58.005 47.619 0.00 0.00 39.62 3.35
45 46 3.947612 ATGATGAAGGATTGCACCTCT 57.052 42.857 0.00 0.00 39.62 3.69
46 47 6.294397 GGAATAATGATGAAGGATTGCACCTC 60.294 42.308 0.00 0.00 39.62 3.85
47 48 5.537674 GGAATAATGATGAAGGATTGCACCT 59.462 40.000 0.00 0.00 42.69 4.00
48 49 5.302568 TGGAATAATGATGAAGGATTGCACC 59.697 40.000 0.00 0.00 0.00 5.01
49 50 6.263842 TCTGGAATAATGATGAAGGATTGCAC 59.736 38.462 0.00 0.00 0.00 4.57
50 51 6.367161 TCTGGAATAATGATGAAGGATTGCA 58.633 36.000 0.00 0.00 0.00 4.08
51 52 6.072064 CCTCTGGAATAATGATGAAGGATTGC 60.072 42.308 0.00 0.00 0.00 3.56
52 53 7.002879 ACCTCTGGAATAATGATGAAGGATTG 58.997 38.462 0.00 0.00 0.00 2.67
53 54 7.159201 ACCTCTGGAATAATGATGAAGGATT 57.841 36.000 0.00 0.00 0.00 3.01
54 55 6.776887 ACCTCTGGAATAATGATGAAGGAT 57.223 37.500 0.00 0.00 0.00 3.24
55 56 6.581388 AACCTCTGGAATAATGATGAAGGA 57.419 37.500 0.00 0.00 0.00 3.36
56 57 6.040166 CCAAACCTCTGGAATAATGATGAAGG 59.960 42.308 0.00 0.00 38.96 3.46
57 58 6.830324 TCCAAACCTCTGGAATAATGATGAAG 59.170 38.462 0.00 0.00 42.69 3.02
58 59 6.730447 TCCAAACCTCTGGAATAATGATGAA 58.270 36.000 0.00 0.00 42.69 2.57
59 60 6.158520 TCTCCAAACCTCTGGAATAATGATGA 59.841 38.462 0.00 0.00 44.97 2.92
60 61 6.359804 TCTCCAAACCTCTGGAATAATGATG 58.640 40.000 0.00 0.00 44.97 3.07
61 62 6.581388 TCTCCAAACCTCTGGAATAATGAT 57.419 37.500 0.00 0.00 44.97 2.45
62 63 6.387192 TTCTCCAAACCTCTGGAATAATGA 57.613 37.500 0.00 0.00 44.97 2.57
63 64 7.340232 TGATTTCTCCAAACCTCTGGAATAATG 59.660 37.037 0.00 0.00 44.97 1.90
64 65 7.413446 TGATTTCTCCAAACCTCTGGAATAAT 58.587 34.615 0.00 0.00 44.97 1.28
65 66 6.789268 TGATTTCTCCAAACCTCTGGAATAA 58.211 36.000 0.00 0.00 44.97 1.40
66 67 6.215431 TCTGATTTCTCCAAACCTCTGGAATA 59.785 38.462 0.00 0.00 44.97 1.75
67 68 5.014544 TCTGATTTCTCCAAACCTCTGGAAT 59.985 40.000 0.00 0.00 44.97 3.01
68 69 4.350816 TCTGATTTCTCCAAACCTCTGGAA 59.649 41.667 0.00 0.00 44.97 3.53
69 70 3.909995 TCTGATTTCTCCAAACCTCTGGA 59.090 43.478 0.00 0.00 43.45 3.86
70 71 4.006319 GTCTGATTTCTCCAAACCTCTGG 58.994 47.826 0.00 0.00 37.87 3.86
71 72 4.645535 TGTCTGATTTCTCCAAACCTCTG 58.354 43.478 0.00 0.00 0.00 3.35
72 73 4.982241 TGTCTGATTTCTCCAAACCTCT 57.018 40.909 0.00 0.00 0.00 3.69
73 74 5.248640 TGATGTCTGATTTCTCCAAACCTC 58.751 41.667 0.00 0.00 0.00 3.85
74 75 5.246981 TGATGTCTGATTTCTCCAAACCT 57.753 39.130 0.00 0.00 0.00 3.50
75 76 5.220739 CGATGATGTCTGATTTCTCCAAACC 60.221 44.000 0.00 0.00 0.00 3.27
76 77 5.582269 TCGATGATGTCTGATTTCTCCAAAC 59.418 40.000 0.00 0.00 0.00 2.93
77 78 5.733676 TCGATGATGTCTGATTTCTCCAAA 58.266 37.500 0.00 0.00 0.00 3.28
78 79 5.343307 TCGATGATGTCTGATTTCTCCAA 57.657 39.130 0.00 0.00 0.00 3.53
79 80 4.202192 CCTCGATGATGTCTGATTTCTCCA 60.202 45.833 0.00 0.00 0.00 3.86
80 81 4.202202 ACCTCGATGATGTCTGATTTCTCC 60.202 45.833 0.00 0.00 0.00 3.71
81 82 4.942852 ACCTCGATGATGTCTGATTTCTC 58.057 43.478 0.00 0.00 0.00 2.87
82 83 5.010516 CCTACCTCGATGATGTCTGATTTCT 59.989 44.000 0.00 0.00 0.00 2.52
83 84 5.010112 TCCTACCTCGATGATGTCTGATTTC 59.990 44.000 0.00 0.00 0.00 2.17
84 85 4.895889 TCCTACCTCGATGATGTCTGATTT 59.104 41.667 0.00 0.00 0.00 2.17
85 86 4.474394 TCCTACCTCGATGATGTCTGATT 58.526 43.478 0.00 0.00 0.00 2.57
86 87 4.105754 TCCTACCTCGATGATGTCTGAT 57.894 45.455 0.00 0.00 0.00 2.90
87 88 3.577805 TCCTACCTCGATGATGTCTGA 57.422 47.619 0.00 0.00 0.00 3.27
88 89 3.885901 TCTTCCTACCTCGATGATGTCTG 59.114 47.826 0.00 0.00 0.00 3.51
89 90 3.886505 GTCTTCCTACCTCGATGATGTCT 59.113 47.826 0.00 0.00 0.00 3.41
90 91 3.304123 CGTCTTCCTACCTCGATGATGTC 60.304 52.174 0.00 0.00 0.00 3.06
91 92 2.619177 CGTCTTCCTACCTCGATGATGT 59.381 50.000 0.00 0.00 0.00 3.06
92 93 2.605823 GCGTCTTCCTACCTCGATGATG 60.606 54.545 0.00 0.00 0.00 3.07
93 94 1.609555 GCGTCTTCCTACCTCGATGAT 59.390 52.381 0.00 0.00 0.00 2.45
94 95 1.022735 GCGTCTTCCTACCTCGATGA 58.977 55.000 0.00 0.00 0.00 2.92
95 96 0.030908 GGCGTCTTCCTACCTCGATG 59.969 60.000 0.00 0.00 0.00 3.84
96 97 0.395311 TGGCGTCTTCCTACCTCGAT 60.395 55.000 0.00 0.00 0.00 3.59
97 98 0.395311 ATGGCGTCTTCCTACCTCGA 60.395 55.000 0.00 0.00 0.00 4.04
98 99 1.315690 TATGGCGTCTTCCTACCTCG 58.684 55.000 0.00 0.00 0.00 4.63
99 100 3.814005 TTTATGGCGTCTTCCTACCTC 57.186 47.619 0.00 0.00 0.00 3.85
100 101 3.262405 TGTTTTATGGCGTCTTCCTACCT 59.738 43.478 0.00 0.00 0.00 3.08
101 102 3.602483 TGTTTTATGGCGTCTTCCTACC 58.398 45.455 0.00 0.00 0.00 3.18
102 103 5.813080 AATGTTTTATGGCGTCTTCCTAC 57.187 39.130 0.00 0.00 0.00 3.18
103 104 8.514330 AAATAATGTTTTATGGCGTCTTCCTA 57.486 30.769 0.00 0.00 0.00 2.94
104 105 7.122055 TGAAATAATGTTTTATGGCGTCTTCCT 59.878 33.333 0.00 0.00 0.00 3.36
105 106 7.254852 TGAAATAATGTTTTATGGCGTCTTCC 58.745 34.615 0.00 0.00 0.00 3.46
106 107 8.583765 GTTGAAATAATGTTTTATGGCGTCTTC 58.416 33.333 0.00 0.00 0.00 2.87
107 108 8.085296 TGTTGAAATAATGTTTTATGGCGTCTT 58.915 29.630 0.00 0.00 0.00 3.01
108 109 7.598278 TGTTGAAATAATGTTTTATGGCGTCT 58.402 30.769 0.00 0.00 0.00 4.18
109 110 7.804614 TGTTGAAATAATGTTTTATGGCGTC 57.195 32.000 0.00 0.00 0.00 5.19
110 111 7.816995 ACATGTTGAAATAATGTTTTATGGCGT 59.183 29.630 0.00 0.00 30.41 5.68
111 112 8.183830 ACATGTTGAAATAATGTTTTATGGCG 57.816 30.769 0.00 0.00 30.41 5.69
112 113 9.149225 TGACATGTTGAAATAATGTTTTATGGC 57.851 29.630 0.00 0.00 34.74 4.40
425 426 2.032528 TGGCGGCTTGAGAAGTGG 59.967 61.111 11.43 0.00 0.00 4.00
426 427 1.302033 ACTGGCGGCTTGAGAAGTG 60.302 57.895 11.43 0.00 0.00 3.16
427 428 1.302033 CACTGGCGGCTTGAGAAGT 60.302 57.895 11.43 0.24 0.00 3.01
428 429 1.004560 TCACTGGCGGCTTGAGAAG 60.005 57.895 11.43 0.00 0.00 2.85
429 430 1.004560 CTCACTGGCGGCTTGAGAA 60.005 57.895 26.61 0.12 39.36 2.87
430 431 1.908299 TCTCACTGGCGGCTTGAGA 60.908 57.895 28.17 28.17 42.75 3.27
431 432 1.088340 CATCTCACTGGCGGCTTGAG 61.088 60.000 25.49 25.49 38.52 3.02
432 433 1.078918 CATCTCACTGGCGGCTTGA 60.079 57.895 11.43 11.89 0.00 3.02
433 434 1.078918 TCATCTCACTGGCGGCTTG 60.079 57.895 11.43 7.71 0.00 4.01
434 435 1.220206 CTCATCTCACTGGCGGCTT 59.780 57.895 11.43 0.00 0.00 4.35
435 436 1.986757 ACTCATCTCACTGGCGGCT 60.987 57.895 11.43 0.00 0.00 5.52
436 437 1.812922 CACTCATCTCACTGGCGGC 60.813 63.158 0.00 0.00 0.00 6.53
437 438 0.179116 CTCACTCATCTCACTGGCGG 60.179 60.000 0.00 0.00 0.00 6.13
438 439 0.179116 CCTCACTCATCTCACTGGCG 60.179 60.000 0.00 0.00 0.00 5.69
439 440 1.136695 CTCCTCACTCATCTCACTGGC 59.863 57.143 0.00 0.00 0.00 4.85
440 441 1.755959 CCTCCTCACTCATCTCACTGG 59.244 57.143 0.00 0.00 0.00 4.00
441 442 1.755959 CCCTCCTCACTCATCTCACTG 59.244 57.143 0.00 0.00 0.00 3.66
442 443 1.342874 CCCCTCCTCACTCATCTCACT 60.343 57.143 0.00 0.00 0.00 3.41
443 444 1.118838 CCCCTCCTCACTCATCTCAC 58.881 60.000 0.00 0.00 0.00 3.51
444 445 0.031716 CCCCCTCCTCACTCATCTCA 60.032 60.000 0.00 0.00 0.00 3.27
445 446 0.263172 TCCCCCTCCTCACTCATCTC 59.737 60.000 0.00 0.00 0.00 2.75
446 447 0.031616 GTCCCCCTCCTCACTCATCT 60.032 60.000 0.00 0.00 0.00 2.90
447 448 0.325671 TGTCCCCCTCCTCACTCATC 60.326 60.000 0.00 0.00 0.00 2.92
448 449 0.119155 TTGTCCCCCTCCTCACTCAT 59.881 55.000 0.00 0.00 0.00 2.90
449 450 0.545309 CTTGTCCCCCTCCTCACTCA 60.545 60.000 0.00 0.00 0.00 3.41
450 451 1.268283 CCTTGTCCCCCTCCTCACTC 61.268 65.000 0.00 0.00 0.00 3.51
451 452 1.229658 CCTTGTCCCCCTCCTCACT 60.230 63.158 0.00 0.00 0.00 3.41
452 453 2.972819 GCCTTGTCCCCCTCCTCAC 61.973 68.421 0.00 0.00 0.00 3.51
453 454 2.610859 GCCTTGTCCCCCTCCTCA 60.611 66.667 0.00 0.00 0.00 3.86
454 455 3.787001 CGCCTTGTCCCCCTCCTC 61.787 72.222 0.00 0.00 0.00 3.71
463 464 4.025401 CAACACCGCCGCCTTGTC 62.025 66.667 0.00 0.00 0.00 3.18
464 465 4.555709 TCAACACCGCCGCCTTGT 62.556 61.111 0.00 0.00 0.00 3.16
465 466 3.726517 CTCAACACCGCCGCCTTG 61.727 66.667 0.00 0.00 0.00 3.61
469 470 4.373116 TCTCCTCAACACCGCCGC 62.373 66.667 0.00 0.00 0.00 6.53
470 471 2.432628 GTCTCCTCAACACCGCCG 60.433 66.667 0.00 0.00 0.00 6.46
471 472 0.741221 GATGTCTCCTCAACACCGCC 60.741 60.000 0.00 0.00 0.00 6.13
472 473 0.247736 AGATGTCTCCTCAACACCGC 59.752 55.000 0.00 0.00 0.00 5.68
473 474 3.017442 TCTAGATGTCTCCTCAACACCG 58.983 50.000 0.00 0.00 0.00 4.94
474 475 5.606348 ATTCTAGATGTCTCCTCAACACC 57.394 43.478 0.00 0.00 0.00 4.16
475 476 7.206687 CCTAATTCTAGATGTCTCCTCAACAC 58.793 42.308 0.00 0.00 0.00 3.32
476 477 6.325028 CCCTAATTCTAGATGTCTCCTCAACA 59.675 42.308 0.00 0.00 0.00 3.33
477 478 6.551601 TCCCTAATTCTAGATGTCTCCTCAAC 59.448 42.308 0.00 0.00 0.00 3.18
478 479 6.683537 TCCCTAATTCTAGATGTCTCCTCAA 58.316 40.000 0.00 0.00 0.00 3.02
479 480 6.281190 TCCCTAATTCTAGATGTCTCCTCA 57.719 41.667 0.00 0.00 0.00 3.86
480 481 6.294286 CGTTCCCTAATTCTAGATGTCTCCTC 60.294 46.154 0.00 0.00 0.00 3.71
481 482 5.536916 CGTTCCCTAATTCTAGATGTCTCCT 59.463 44.000 0.00 0.00 0.00 3.69
482 483 5.279056 CCGTTCCCTAATTCTAGATGTCTCC 60.279 48.000 0.00 0.00 0.00 3.71
483 484 5.279056 CCCGTTCCCTAATTCTAGATGTCTC 60.279 48.000 0.00 0.00 0.00 3.36
484 485 4.589374 CCCGTTCCCTAATTCTAGATGTCT 59.411 45.833 0.00 0.00 0.00 3.41
485 486 4.262506 CCCCGTTCCCTAATTCTAGATGTC 60.263 50.000 0.00 0.00 0.00 3.06
486 487 3.646637 CCCCGTTCCCTAATTCTAGATGT 59.353 47.826 0.00 0.00 0.00 3.06
487 488 3.901844 TCCCCGTTCCCTAATTCTAGATG 59.098 47.826 0.00 0.00 0.00 2.90
488 489 3.902467 GTCCCCGTTCCCTAATTCTAGAT 59.098 47.826 0.00 0.00 0.00 1.98
489 490 3.303049 GTCCCCGTTCCCTAATTCTAGA 58.697 50.000 0.00 0.00 0.00 2.43
490 491 2.035576 CGTCCCCGTTCCCTAATTCTAG 59.964 54.545 0.00 0.00 0.00 2.43
491 492 2.034124 CGTCCCCGTTCCCTAATTCTA 58.966 52.381 0.00 0.00 0.00 2.10
492 493 0.828677 CGTCCCCGTTCCCTAATTCT 59.171 55.000 0.00 0.00 0.00 2.40
493 494 0.812811 GCGTCCCCGTTCCCTAATTC 60.813 60.000 0.00 0.00 36.15 2.17
494 495 1.222661 GCGTCCCCGTTCCCTAATT 59.777 57.895 0.00 0.00 36.15 1.40
495 496 0.397535 TAGCGTCCCCGTTCCCTAAT 60.398 55.000 0.00 0.00 36.15 1.73
496 497 0.397535 ATAGCGTCCCCGTTCCCTAA 60.398 55.000 0.00 0.00 36.15 2.69
497 498 1.111116 CATAGCGTCCCCGTTCCCTA 61.111 60.000 0.00 0.00 36.15 3.53
498 499 2.042230 ATAGCGTCCCCGTTCCCT 60.042 61.111 0.00 0.00 36.15 4.20
499 500 2.108362 CATAGCGTCCCCGTTCCC 59.892 66.667 0.00 0.00 36.15 3.97
500 501 0.808847 GAACATAGCGTCCCCGTTCC 60.809 60.000 0.00 0.00 36.15 3.62
501 502 0.808847 GGAACATAGCGTCCCCGTTC 60.809 60.000 0.00 0.00 36.17 3.95
502 503 1.219935 GGAACATAGCGTCCCCGTT 59.780 57.895 0.00 0.00 36.15 4.44
503 504 1.262640 AAGGAACATAGCGTCCCCGT 61.263 55.000 0.00 0.00 36.15 5.28
504 505 0.107848 AAAGGAACATAGCGTCCCCG 60.108 55.000 0.00 0.00 37.07 5.73
505 506 2.124277 AAAAGGAACATAGCGTCCCC 57.876 50.000 0.00 0.00 0.00 4.81
554 555 7.594714 TGCGCATTGTATCCTTAAGTTAAAAA 58.405 30.769 5.66 0.00 0.00 1.94
555 556 7.147143 TGCGCATTGTATCCTTAAGTTAAAA 57.853 32.000 5.66 0.00 0.00 1.52
556 557 6.745159 TGCGCATTGTATCCTTAAGTTAAA 57.255 33.333 5.66 0.00 0.00 1.52
557 558 6.745159 TTGCGCATTGTATCCTTAAGTTAA 57.255 33.333 12.75 0.00 0.00 2.01
558 559 6.373216 ACTTTGCGCATTGTATCCTTAAGTTA 59.627 34.615 12.75 0.00 0.00 2.24
559 560 5.183140 ACTTTGCGCATTGTATCCTTAAGTT 59.817 36.000 12.75 0.00 0.00 2.66
560 561 4.700213 ACTTTGCGCATTGTATCCTTAAGT 59.300 37.500 12.75 11.10 0.00 2.24
561 562 5.030295 CACTTTGCGCATTGTATCCTTAAG 58.970 41.667 12.75 10.38 0.00 1.85
562 563 4.697828 TCACTTTGCGCATTGTATCCTTAA 59.302 37.500 12.75 0.00 0.00 1.85
563 564 4.257731 TCACTTTGCGCATTGTATCCTTA 58.742 39.130 12.75 0.00 0.00 2.69
564 565 3.081061 TCACTTTGCGCATTGTATCCTT 58.919 40.909 12.75 0.00 0.00 3.36
565 566 2.710377 TCACTTTGCGCATTGTATCCT 58.290 42.857 12.75 0.00 0.00 3.24
566 567 3.698029 ATCACTTTGCGCATTGTATCC 57.302 42.857 12.75 0.00 0.00 2.59
567 568 6.393720 AAAAATCACTTTGCGCATTGTATC 57.606 33.333 12.75 0.00 0.00 2.24
588 589 8.194104 TGTATTTCACTTTGCTTGCTCTAAAAA 58.806 29.630 0.00 0.00 0.00 1.94
589 590 7.711846 TGTATTTCACTTTGCTTGCTCTAAAA 58.288 30.769 0.00 0.00 0.00 1.52
590 591 7.270757 TGTATTTCACTTTGCTTGCTCTAAA 57.729 32.000 0.00 0.00 0.00 1.85
591 592 6.875948 TGTATTTCACTTTGCTTGCTCTAA 57.124 33.333 0.00 0.00 0.00 2.10
592 593 6.875948 TTGTATTTCACTTTGCTTGCTCTA 57.124 33.333 0.00 0.00 0.00 2.43
593 594 5.772825 TTGTATTTCACTTTGCTTGCTCT 57.227 34.783 0.00 0.00 0.00 4.09
594 595 6.208644 TCTTTGTATTTCACTTTGCTTGCTC 58.791 36.000 0.00 0.00 0.00 4.26
595 596 6.147864 TCTTTGTATTTCACTTTGCTTGCT 57.852 33.333 0.00 0.00 0.00 3.91
596 597 6.617105 GCATCTTTGTATTTCACTTTGCTTGC 60.617 38.462 0.00 0.00 0.00 4.01
597 598 6.421501 TGCATCTTTGTATTTCACTTTGCTTG 59.578 34.615 0.00 0.00 0.00 4.01
598 599 6.514947 TGCATCTTTGTATTTCACTTTGCTT 58.485 32.000 0.00 0.00 0.00 3.91
599 600 6.088016 TGCATCTTTGTATTTCACTTTGCT 57.912 33.333 0.00 0.00 0.00 3.91
600 601 6.768029 TTGCATCTTTGTATTTCACTTTGC 57.232 33.333 0.00 0.00 0.00 3.68
601 602 8.437742 GGAATTGCATCTTTGTATTTCACTTTG 58.562 33.333 0.00 0.00 32.68 2.77
602 603 8.370182 AGGAATTGCATCTTTGTATTTCACTTT 58.630 29.630 0.00 0.00 32.68 2.66
603 604 7.899973 AGGAATTGCATCTTTGTATTTCACTT 58.100 30.769 0.00 0.00 32.68 3.16
604 605 7.177216 TGAGGAATTGCATCTTTGTATTTCACT 59.823 33.333 0.00 0.00 32.68 3.41
605 606 7.274250 GTGAGGAATTGCATCTTTGTATTTCAC 59.726 37.037 0.00 0.00 32.68 3.18
606 607 7.177216 AGTGAGGAATTGCATCTTTGTATTTCA 59.823 33.333 0.00 0.00 32.68 2.69
607 608 7.542025 AGTGAGGAATTGCATCTTTGTATTTC 58.458 34.615 0.00 0.00 31.23 2.17
608 609 7.472334 AGTGAGGAATTGCATCTTTGTATTT 57.528 32.000 0.00 0.00 0.00 1.40
609 610 7.395489 AGAAGTGAGGAATTGCATCTTTGTATT 59.605 33.333 0.00 0.00 0.00 1.89
610 611 6.888632 AGAAGTGAGGAATTGCATCTTTGTAT 59.111 34.615 0.00 0.00 0.00 2.29
611 612 6.240894 AGAAGTGAGGAATTGCATCTTTGTA 58.759 36.000 0.00 0.00 0.00 2.41
612 613 5.075493 AGAAGTGAGGAATTGCATCTTTGT 58.925 37.500 0.00 0.00 0.00 2.83
613 614 5.640189 AGAAGTGAGGAATTGCATCTTTG 57.360 39.130 0.00 0.00 0.00 2.77
614 615 6.661304 AAAGAAGTGAGGAATTGCATCTTT 57.339 33.333 0.00 4.68 32.64 2.52
615 616 6.661304 AAAAGAAGTGAGGAATTGCATCTT 57.339 33.333 0.00 0.63 0.00 2.40
616 617 6.661304 AAAAAGAAGTGAGGAATTGCATCT 57.339 33.333 0.00 0.00 0.00 2.90
640 641 5.691305 CGAGGAATGTGCATTTTCTCAAAAA 59.309 36.000 16.56 0.00 38.66 1.94
641 642 5.221880 CGAGGAATGTGCATTTTCTCAAAA 58.778 37.500 16.56 0.00 34.28 2.44
642 643 4.797471 CGAGGAATGTGCATTTTCTCAAA 58.203 39.130 16.56 0.00 34.28 2.69
643 644 3.366273 GCGAGGAATGTGCATTTTCTCAA 60.366 43.478 16.56 0.00 34.28 3.02
644 645 2.162208 GCGAGGAATGTGCATTTTCTCA 59.838 45.455 16.56 0.00 34.28 3.27
645 646 2.162208 TGCGAGGAATGTGCATTTTCTC 59.838 45.455 9.55 9.55 32.86 2.87
646 647 2.161855 TGCGAGGAATGTGCATTTTCT 58.838 42.857 10.33 2.84 32.86 2.52
647 648 2.634982 TGCGAGGAATGTGCATTTTC 57.365 45.000 0.00 0.00 32.86 2.29
656 657 1.097232 TGGCAGAAATGCGAGGAATG 58.903 50.000 0.00 0.00 35.24 2.67
675 676 2.177016 GTTATTGGGCTGGGGGAACTAT 59.823 50.000 0.00 0.00 0.00 2.12
676 677 1.567175 GTTATTGGGCTGGGGGAACTA 59.433 52.381 0.00 0.00 0.00 2.24
683 684 0.183731 GAGAGGGTTATTGGGCTGGG 59.816 60.000 0.00 0.00 0.00 4.45
721 722 3.532155 GCCAGAGGATCGTCGGCT 61.532 66.667 28.25 6.17 43.51 5.52
725 726 4.593864 GCGGGCCAGAGGATCGTC 62.594 72.222 7.23 7.34 42.67 4.20
1085 1100 4.880426 GGGAGAGCGGGATGGGGA 62.880 72.222 0.00 0.00 0.00 4.81
1090 1105 2.840102 CTTCCGGGAGAGCGGGAT 60.840 66.667 2.45 0.00 0.00 3.85
1091 1106 4.377760 ACTTCCGGGAGAGCGGGA 62.378 66.667 19.39 0.00 0.00 5.14
1281 1304 4.008933 ACTGGCAGCACGAGGGAC 62.009 66.667 15.89 0.00 0.00 4.46
1282 1305 4.007644 CACTGGCAGCACGAGGGA 62.008 66.667 15.89 0.00 26.29 4.20
1293 1316 2.203337 TTGGGACACTGCACTGGC 60.203 61.111 0.00 0.00 39.29 4.85
1294 1317 1.149174 AGTTGGGACACTGCACTGG 59.851 57.895 0.00 0.00 39.29 4.00
1295 1318 2.324215 CAGTTGGGACACTGCACTG 58.676 57.895 0.00 0.00 39.29 3.66
1296 1319 4.885426 CAGTTGGGACACTGCACT 57.115 55.556 0.00 0.00 39.29 4.40
1307 1330 0.868406 GACGGTTCAAGAGCAGTTGG 59.132 55.000 0.00 0.00 0.00 3.77
1336 1360 6.264518 ACAGTTGTAAGTTCTAACCCCAATTG 59.735 38.462 0.00 0.00 31.08 2.32
1344 1368 7.148623 GCATCTACCACAGTTGTAAGTTCTAAC 60.149 40.741 0.00 0.00 0.00 2.34
1362 1386 0.462759 GGCTGGTCACTGCATCTACC 60.463 60.000 4.89 4.89 42.66 3.18
1364 1388 0.618680 AGGGCTGGTCACTGCATCTA 60.619 55.000 0.00 0.00 42.66 1.98
1365 1389 1.495579 AAGGGCTGGTCACTGCATCT 61.496 55.000 0.00 0.00 42.66 2.90
1367 1391 0.178953 AAAAGGGCTGGTCACTGCAT 60.179 50.000 0.00 0.00 42.66 3.96
1368 1392 1.108727 CAAAAGGGCTGGTCACTGCA 61.109 55.000 0.00 0.00 42.66 4.41
1369 1393 1.109323 ACAAAAGGGCTGGTCACTGC 61.109 55.000 0.00 0.00 40.44 4.40
1370 1394 1.338020 GAACAAAAGGGCTGGTCACTG 59.662 52.381 0.00 0.00 30.46 3.66
1371 1395 1.215423 AGAACAAAAGGGCTGGTCACT 59.785 47.619 0.00 0.00 32.63 3.41
1395 1419 8.350722 GTTCCATATCAAGATCGTACTTACTCA 58.649 37.037 0.00 0.00 0.00 3.41
1421 1445 2.159043 ACACGCTGAATCTATCCACAGG 60.159 50.000 0.00 0.00 0.00 4.00
1464 1488 2.076863 GCCACATCAACTCCACAGTAC 58.923 52.381 0.00 0.00 30.14 2.73
1465 1489 1.696884 TGCCACATCAACTCCACAGTA 59.303 47.619 0.00 0.00 30.14 2.74
1498 1522 2.486918 CTCAATCACCGCATATCAGCA 58.513 47.619 0.00 0.00 0.00 4.41
1509 1533 3.757248 ATCGGGCGCCTCAATCACC 62.757 63.158 28.56 5.59 0.00 4.02
1548 1572 1.060713 CACCGCTATCCTAATTCGCG 58.939 55.000 0.00 0.00 43.08 5.87
1562 1586 0.179108 CCAAGTAGCTAGGTCACCGC 60.179 60.000 0.00 0.00 0.00 5.68
1623 1647 0.321671 TCCCGAGCAAACAGAAGAGG 59.678 55.000 0.00 0.00 0.00 3.69
1643 1667 3.455910 CAGAATGACCCAAGGATACAGGA 59.544 47.826 0.00 0.00 39.69 3.86
1657 1681 3.439476 AGAAGCACTTGCATCAGAATGAC 59.561 43.478 8.98 0.00 44.14 3.06
1696 1720 2.489073 GGCCAGAATAAATCGGGTCCAT 60.489 50.000 0.00 0.00 41.61 3.41
1717 1741 4.096382 GGGTGATATTGTGCTAACCAGTTG 59.904 45.833 0.00 0.00 0.00 3.16
1759 1786 4.160814 AGCACATATACTTCCGTAACACCA 59.839 41.667 0.00 0.00 0.00 4.17
1767 1794 5.230182 TCAGCATAAGCACATATACTTCCG 58.770 41.667 0.00 0.00 45.49 4.30
1771 1798 7.173907 GGAACAATCAGCATAAGCACATATACT 59.826 37.037 0.00 0.00 45.49 2.12
1836 1864 4.399303 CAGGGAGAAATTCTGCGGTTTAAT 59.601 41.667 8.37 0.00 35.51 1.40
1843 1871 2.286294 CGATTCAGGGAGAAATTCTGCG 59.714 50.000 8.37 0.00 40.22 5.18
2103 2138 6.258230 TGATTGACCACATCTGAAAATCAC 57.742 37.500 0.00 0.00 29.99 3.06
2121 2156 6.412943 CGTGCAAACAAGAAGCTATATGATTG 59.587 38.462 9.67 9.67 0.00 2.67
2127 2162 4.311606 TGTCGTGCAAACAAGAAGCTATA 58.688 39.130 0.85 0.00 36.01 1.31
2138 2173 4.536065 TCAAAATGAGATGTCGTGCAAAC 58.464 39.130 0.00 0.00 0.00 2.93
2276 2311 5.453567 AACCTGCATTCTCAAGTTTAACC 57.546 39.130 0.00 0.00 0.00 2.85
2420 2455 5.222079 TGGCAAGCACGGAATATATTCTA 57.778 39.130 21.80 0.00 37.00 2.10
2566 2601 8.141909 AGGAAAATTTGGCTAAAAGTACAGTTC 58.858 33.333 0.00 0.00 0.00 3.01
2647 2682 7.391148 TGCTTTTGATAAAACTAGACCCATC 57.609 36.000 0.00 0.00 0.00 3.51
2655 2690 8.415950 TTGATCCCTTGCTTTTGATAAAACTA 57.584 30.769 0.00 0.00 0.00 2.24
2687 2722 4.466015 ACGATGGGTAATTTCCTTGCAATT 59.534 37.500 0.00 0.00 0.00 2.32
2707 2742 5.931724 TGACTGAAGCATTGATCTTAAACGA 59.068 36.000 0.00 0.00 0.00 3.85
2884 2919 6.572182 AGATCAGGATCTTCCAAATTCTCA 57.428 37.500 5.98 0.00 45.31 3.27
3451 3488 1.208052 AGATCAACATCCCACAGTCCG 59.792 52.381 0.00 0.00 0.00 4.79
3463 3500 8.694540 CCATTTACATTCCCATTAAGATCAACA 58.305 33.333 0.00 0.00 0.00 3.33
3502 3539 3.706373 TGGAAGCTCTCCCCGCAC 61.706 66.667 11.06 0.00 44.69 5.34
3505 3542 4.148825 CGGTGGAAGCTCTCCCCG 62.149 72.222 19.63 19.63 45.60 5.73
3514 3551 3.435671 GGTACTTGTCAAATCGGTGGAAG 59.564 47.826 0.00 0.00 0.00 3.46
3547 3584 7.330700 TCAAAATTCTGCGAAATATTTGGGTTC 59.669 33.333 5.17 0.00 0.00 3.62
3580 3617 0.101040 CATAAGCCCAACCACATGCG 59.899 55.000 0.00 0.00 0.00 4.73
3710 3747 3.070018 CAGAAGAGTGGGCACAGTAAAG 58.930 50.000 0.00 0.00 0.00 1.85
3726 3763 3.871594 AGAAAACAGTTGACGGACAGAAG 59.128 43.478 0.00 0.00 0.00 2.85
3732 3769 1.668751 GTGCAGAAAACAGTTGACGGA 59.331 47.619 0.00 0.00 0.00 4.69
3740 3777 2.724349 GCAAGACAGTGCAGAAAACAG 58.276 47.619 0.00 0.00 44.29 3.16
3757 3794 6.964807 ATGAATTATTATGAGGCACTGCAA 57.035 33.333 2.82 0.00 41.55 4.08
3762 3799 7.040478 TGCTACCAATGAATTATTATGAGGCAC 60.040 37.037 0.00 0.00 0.00 5.01
3763 3800 7.003482 TGCTACCAATGAATTATTATGAGGCA 58.997 34.615 0.00 0.00 0.00 4.75
3764 3801 7.452880 TGCTACCAATGAATTATTATGAGGC 57.547 36.000 0.00 0.00 0.00 4.70
3765 3802 9.071276 ACTTGCTACCAATGAATTATTATGAGG 57.929 33.333 0.00 0.00 0.00 3.86
3790 3994 1.067212 CTACGGTGGCAGATCCTACAC 59.933 57.143 0.00 3.42 35.26 2.90
3809 4013 7.898014 ATTCTAGTTTCAGAAACCCAAAACT 57.102 32.000 20.47 4.74 42.34 2.66
3852 4056 6.968263 TTCACCTATACATCTCAGGAAGAG 57.032 41.667 0.00 0.00 46.14 2.85
3892 4096 1.087501 GTCAAGACTTGGGATTCGGC 58.912 55.000 15.13 0.00 0.00 5.54
3893 4097 2.076863 GTGTCAAGACTTGGGATTCGG 58.923 52.381 15.13 0.00 0.00 4.30
3895 4099 3.339141 GAGGTGTCAAGACTTGGGATTC 58.661 50.000 15.13 4.13 0.00 2.52
3898 4102 1.056660 GGAGGTGTCAAGACTTGGGA 58.943 55.000 15.13 0.00 0.00 4.37
3899 4103 1.059913 AGGAGGTGTCAAGACTTGGG 58.940 55.000 15.13 0.00 0.00 4.12
3913 4117 1.000171 GCAAGGCAAAGAAACAGGAGG 60.000 52.381 0.00 0.00 0.00 4.30
3914 4118 1.959282 AGCAAGGCAAAGAAACAGGAG 59.041 47.619 0.00 0.00 0.00 3.69
3915 4119 1.956477 GAGCAAGGCAAAGAAACAGGA 59.044 47.619 0.00 0.00 0.00 3.86
3916 4120 1.959282 AGAGCAAGGCAAAGAAACAGG 59.041 47.619 0.00 0.00 0.00 4.00
3980 4184 3.785859 GTCATCAGGCCTGGCGGA 61.786 66.667 32.23 22.64 0.00 5.54
4187 4391 3.142393 CAGCCCCGGACATAGGAG 58.858 66.667 0.73 0.00 0.00 3.69
4262 4466 6.398095 CAACAGGGAAACACTTTCTTTCTTT 58.602 36.000 0.00 0.00 39.59 2.52
4270 4474 3.951680 CACTACCAACAGGGAAACACTTT 59.048 43.478 0.00 0.00 41.15 2.66
4287 4491 3.123804 ACATGCGCTATAACTGCACTAC 58.876 45.455 9.73 0.00 42.11 2.73
4292 4496 3.602491 CGAAGAACATGCGCTATAACTGC 60.602 47.826 9.73 0.58 0.00 4.40
4379 4587 1.073216 CTAGTCGAGGCAGCACAACG 61.073 60.000 0.00 0.00 0.00 4.10
4418 4627 9.350357 CACCATTCTTTTCAAGAGAATAACATG 57.650 33.333 2.92 0.00 40.82 3.21
4636 5288 1.430707 GCGGGCGGCGTTCTAAATTA 61.431 55.000 9.37 0.00 0.00 1.40
4681 5334 8.934697 AGTACATACTCCCAATCTTAATAAGCA 58.065 33.333 0.00 0.00 0.00 3.91
4757 5426 6.478673 GTGCTTGCAATTGTTTACCTAACTTT 59.521 34.615 7.40 0.00 37.64 2.66
4760 5523 5.174943 GTGTGCTTGCAATTGTTTACCTAAC 59.825 40.000 7.40 0.00 37.26 2.34
4786 5549 6.348540 CCTTCACTGTATTTTACTGTTGAGCC 60.349 42.308 0.00 0.00 38.55 4.70
4862 5625 2.765108 ATGTCTCGCGTACTGATGAG 57.235 50.000 5.77 0.00 0.00 2.90
4872 5635 5.907197 ATACCTCAAAATAATGTCTCGCG 57.093 39.130 0.00 0.00 0.00 5.87
4886 5649 0.248907 GCGCTGCTCGTATACCTCAA 60.249 55.000 0.00 0.00 41.07 3.02
4953 5717 1.704387 TTACCGCTGACATGCATGCG 61.704 55.000 26.53 22.38 40.98 4.73
4987 5751 2.089201 ACATCGATACGTCTGGTGTCA 58.911 47.619 0.00 0.00 36.64 3.58
4995 5759 4.288670 TCCTTTGAGACATCGATACGTC 57.711 45.455 0.00 2.31 0.00 4.34
5004 5768 3.134623 TCGCATGGTATCCTTTGAGACAT 59.865 43.478 0.00 0.00 34.33 3.06
5017 5781 1.801771 CTCCAAAAACGTCGCATGGTA 59.198 47.619 8.79 0.00 32.90 3.25
5172 5945 2.478033 GGGGCTGGATAAAACCGCG 61.478 63.158 0.00 0.00 33.07 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.