Multiple sequence alignment - TraesCS4B01G028600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G028600 chr4B 100.000 3527 0 0 2023 5549 21195566 21199092 0.000000e+00 6514
1 TraesCS4B01G028600 chr4B 100.000 1664 0 0 1 1664 21193544 21195207 0.000000e+00 3073
2 TraesCS4B01G028600 chr4B 100.000 106 0 0 2287 2392 21195566 21195671 4.390000e-46 196
3 TraesCS4B01G028600 chr4B 100.000 106 0 0 2023 2128 21195830 21195935 4.390000e-46 196
4 TraesCS4B01G028600 chr4A 92.590 1471 97 10 3637 5101 590987565 590986101 0.000000e+00 2102
5 TraesCS4B01G028600 chr4A 92.185 1254 90 7 2119 3367 590988828 590987578 0.000000e+00 1766
6 TraesCS4B01G028600 chr4A 93.020 788 37 9 877 1664 590989787 590989018 0.000000e+00 1134
7 TraesCS4B01G028600 chr4A 95.149 268 13 0 5282 5549 590985959 590985692 1.850000e-114 424
8 TraesCS4B01G028600 chr4A 98.246 57 1 0 5203 5259 590986087 590986031 3.540000e-17 100
9 TraesCS4B01G028600 chr4D 90.808 1349 89 20 2315 3630 11472701 11474047 0.000000e+00 1772
10 TraesCS4B01G028600 chr4D 92.947 794 38 4 3630 4406 11474086 11474878 0.000000e+00 1140
11 TraesCS4B01G028600 chr4D 97.590 664 16 0 4440 5103 11474877 11475540 0.000000e+00 1138
12 TraesCS4B01G028600 chr4D 93.188 778 41 7 876 1653 11471384 11472149 0.000000e+00 1133
13 TraesCS4B01G028600 chr4D 94.524 347 11 1 5203 5549 11475545 11475883 3.810000e-146 529
14 TraesCS4B01G028600 chr4D 88.406 207 21 1 2119 2322 11472348 11472554 4.290000e-61 246
15 TraesCS4B01G028600 chr2B 90.354 622 53 3 256 876 66940811 66940196 0.000000e+00 809
16 TraesCS4B01G028600 chr2B 89.757 576 55 2 301 876 54242295 54241724 0.000000e+00 734
17 TraesCS4B01G028600 chr2B 92.969 256 18 0 2 257 747813842 747813587 1.890000e-99 374
18 TraesCS4B01G028600 chr2B 91.051 257 22 1 2 257 110429812 110430068 4.110000e-91 346
19 TraesCS4B01G028600 chr2B 91.051 257 21 2 2 257 421713204 421713459 4.110000e-91 346
20 TraesCS4B01G028600 chr2B 93.636 110 7 0 5096 5205 768661137 768661028 1.240000e-36 165
21 TraesCS4B01G028600 chr5B 89.280 625 58 5 256 877 457108202 457107584 0.000000e+00 774
22 TraesCS4B01G028600 chr5B 88.728 621 63 6 257 876 626656796 626657410 0.000000e+00 752
23 TraesCS4B01G028600 chr5B 88.413 630 58 11 256 876 505274468 505275091 0.000000e+00 745
24 TraesCS4B01G028600 chr5B 98.990 99 1 0 5107 5205 693583899 693583801 1.590000e-40 178
25 TraesCS4B01G028600 chr5B 97.143 105 2 1 5105 5208 51031108 51031212 5.710000e-40 176
26 TraesCS4B01G028600 chr2D 87.816 632 71 3 257 886 68618264 68618891 0.000000e+00 736
27 TraesCS4B01G028600 chr2D 87.500 632 71 7 257 885 68581094 68581720 0.000000e+00 723
28 TraesCS4B01G028600 chr2D 87.702 618 70 5 260 877 68558970 68559581 0.000000e+00 715
29 TraesCS4B01G028600 chr2D 92.373 118 5 3 5107 5224 98693598 98693485 1.240000e-36 165
30 TraesCS4B01G028600 chr7D 86.634 621 70 10 260 877 515031685 515031075 0.000000e+00 675
31 TraesCS4B01G028600 chr7D 92.218 257 19 1 2 257 562819853 562820109 4.090000e-96 363
32 TraesCS4B01G028600 chr3D 94.531 256 14 0 2 257 8512891 8512636 4.030000e-106 396
33 TraesCS4B01G028600 chr3D 91.829 257 20 1 2 257 350874391 350874135 1.900000e-94 357
34 TraesCS4B01G028600 chr3D 98.020 101 2 0 5108 5208 175405785 175405685 5.710000e-40 176
35 TraesCS4B01G028600 chr7B 92.126 254 18 1 1 252 732326251 732326504 1.900000e-94 357
36 TraesCS4B01G028600 chr7B 91.270 252 22 0 1 252 732292834 732293085 1.480000e-90 344
37 TraesCS4B01G028600 chr5D 91.829 257 20 1 2 257 510060610 510060866 1.900000e-94 357
38 TraesCS4B01G028600 chr5D 96.190 105 3 1 5108 5211 521371581 521371685 2.660000e-38 171
39 TraesCS4B01G028600 chr3B 94.545 110 6 0 5107 5216 523562021 523562130 2.660000e-38 171
40 TraesCS4B01G028600 chr7A 93.694 111 5 2 5107 5217 735412201 735412093 1.240000e-36 165
41 TraesCS4B01G028600 chr6B 92.982 114 6 2 5101 5213 529769695 529769807 1.240000e-36 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G028600 chr4B 21193544 21199092 5548 False 2494.75 6514 100.0000 1 5549 4 chr4B.!!$F1 5548
1 TraesCS4B01G028600 chr4A 590985692 590989787 4095 True 1105.20 2102 94.2380 877 5549 5 chr4A.!!$R1 4672
2 TraesCS4B01G028600 chr4D 11471384 11475883 4499 False 993.00 1772 92.9105 876 5549 6 chr4D.!!$F1 4673
3 TraesCS4B01G028600 chr2B 66940196 66940811 615 True 809.00 809 90.3540 256 876 1 chr2B.!!$R2 620
4 TraesCS4B01G028600 chr2B 54241724 54242295 571 True 734.00 734 89.7570 301 876 1 chr2B.!!$R1 575
5 TraesCS4B01G028600 chr5B 457107584 457108202 618 True 774.00 774 89.2800 256 877 1 chr5B.!!$R1 621
6 TraesCS4B01G028600 chr5B 626656796 626657410 614 False 752.00 752 88.7280 257 876 1 chr5B.!!$F3 619
7 TraesCS4B01G028600 chr5B 505274468 505275091 623 False 745.00 745 88.4130 256 876 1 chr5B.!!$F2 620
8 TraesCS4B01G028600 chr2D 68618264 68618891 627 False 736.00 736 87.8160 257 886 1 chr2D.!!$F3 629
9 TraesCS4B01G028600 chr2D 68581094 68581720 626 False 723.00 723 87.5000 257 885 1 chr2D.!!$F2 628
10 TraesCS4B01G028600 chr2D 68558970 68559581 611 False 715.00 715 87.7020 260 877 1 chr2D.!!$F1 617
11 TraesCS4B01G028600 chr7D 515031075 515031685 610 True 675.00 675 86.6340 260 877 1 chr7D.!!$R1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 225 0.029567 GTAGGCCGAGATGAGTGACG 59.970 60.0 0.00 0.00 0.00 4.35 F
230 231 0.171231 CGAGATGAGTGACGCTGGAA 59.829 55.0 0.00 0.00 0.00 3.53 F
513 525 0.250858 CACCTCCTCAACCATGCACA 60.251 55.0 0.00 0.00 0.00 4.57 F
1324 1340 0.967380 CCAGCGCCCTTCCATTTCTT 60.967 55.0 2.29 0.00 0.00 2.52 F
2510 2698 0.106708 TCAGGGATTGCGTATCTGCC 59.893 55.0 0.00 0.00 33.53 4.85 F
3887 4144 0.389426 CTGGGGGTACAGAACGTTCG 60.389 60.0 21.87 18.19 40.97 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1324 1340 0.394488 CGGAGGAGGAGCAGAGTGTA 60.394 60.000 0.00 0.0 0.00 2.90 R
1330 1346 1.079543 CAACACGGAGGAGGAGCAG 60.080 63.158 0.00 0.0 0.00 4.24 R
1389 1405 1.209019 AGAGGAGCAAGCAATCGATGT 59.791 47.619 0.00 0.0 0.00 3.06 R
3204 3395 1.182667 TCCACGAGACAACCATCGAT 58.817 50.000 1.13 0.0 41.40 3.59 R
4006 4263 0.251354 GCCTTCTGATCTGGCTGACA 59.749 55.000 10.72 0.0 43.05 3.58 R
5188 5468 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.657956 CGACAGAGGAGGAGAATGC 57.342 57.895 0.00 0.00 0.00 3.56
19 20 0.820226 CGACAGAGGAGGAGAATGCA 59.180 55.000 0.00 0.00 0.00 3.96
20 21 1.202394 CGACAGAGGAGGAGAATGCAG 60.202 57.143 0.00 0.00 0.00 4.41
21 22 1.830477 GACAGAGGAGGAGAATGCAGT 59.170 52.381 0.00 0.00 0.00 4.40
22 23 1.554160 ACAGAGGAGGAGAATGCAGTG 59.446 52.381 0.00 0.00 0.00 3.66
23 24 0.540923 AGAGGAGGAGAATGCAGTGC 59.459 55.000 8.58 8.58 0.00 4.40
24 25 0.540923 GAGGAGGAGAATGCAGTGCT 59.459 55.000 17.60 0.00 0.00 4.40
25 26 0.540923 AGGAGGAGAATGCAGTGCTC 59.459 55.000 17.60 6.46 0.00 4.26
26 27 0.251354 GGAGGAGAATGCAGTGCTCA 59.749 55.000 17.60 0.00 33.03 4.26
27 28 1.367659 GAGGAGAATGCAGTGCTCAC 58.632 55.000 17.60 4.98 31.78 3.51
28 29 0.390866 AGGAGAATGCAGTGCTCACG 60.391 55.000 17.60 0.00 36.20 4.35
29 30 1.423056 GAGAATGCAGTGCTCACGC 59.577 57.895 17.60 5.43 36.20 5.34
30 31 1.975363 GAGAATGCAGTGCTCACGCC 61.975 60.000 17.60 0.00 36.20 5.68
31 32 2.281692 AATGCAGTGCTCACGCCA 60.282 55.556 17.60 0.00 36.20 5.69
32 33 1.651240 GAATGCAGTGCTCACGCCAT 61.651 55.000 17.60 0.00 36.20 4.40
33 34 1.929806 AATGCAGTGCTCACGCCATG 61.930 55.000 17.60 0.00 36.20 3.66
34 35 3.807538 GCAGTGCTCACGCCATGG 61.808 66.667 7.63 7.63 36.20 3.66
35 36 2.359107 CAGTGCTCACGCCATGGT 60.359 61.111 14.67 0.00 36.20 3.55
36 37 1.079197 CAGTGCTCACGCCATGGTA 60.079 57.895 14.67 0.00 36.20 3.25
37 38 0.462581 CAGTGCTCACGCCATGGTAT 60.463 55.000 14.67 0.00 36.20 2.73
38 39 0.179073 AGTGCTCACGCCATGGTATC 60.179 55.000 14.67 0.00 36.20 2.24
39 40 1.227234 TGCTCACGCCATGGTATCG 60.227 57.895 14.67 11.20 34.43 2.92
40 41 1.227263 GCTCACGCCATGGTATCGT 60.227 57.895 14.67 11.92 36.84 3.73
41 42 1.215655 GCTCACGCCATGGTATCGTC 61.216 60.000 14.67 0.00 33.84 4.20
42 43 0.102300 CTCACGCCATGGTATCGTCA 59.898 55.000 14.67 0.00 33.84 4.35
43 44 0.102300 TCACGCCATGGTATCGTCAG 59.898 55.000 14.67 4.18 33.84 3.51
44 45 0.179111 CACGCCATGGTATCGTCAGT 60.179 55.000 14.67 0.00 33.84 3.41
45 46 0.179111 ACGCCATGGTATCGTCAGTG 60.179 55.000 14.67 0.00 0.00 3.66
46 47 0.179111 CGCCATGGTATCGTCAGTGT 60.179 55.000 14.67 0.00 0.00 3.55
47 48 1.066454 CGCCATGGTATCGTCAGTGTA 59.934 52.381 14.67 0.00 0.00 2.90
48 49 2.743938 GCCATGGTATCGTCAGTGTAG 58.256 52.381 14.67 0.00 0.00 2.74
49 50 2.100916 GCCATGGTATCGTCAGTGTAGT 59.899 50.000 14.67 0.00 0.00 2.73
50 51 3.706698 CCATGGTATCGTCAGTGTAGTG 58.293 50.000 2.57 0.00 0.00 2.74
51 52 3.490933 CCATGGTATCGTCAGTGTAGTGG 60.491 52.174 2.57 0.00 0.00 4.00
52 53 3.076079 TGGTATCGTCAGTGTAGTGGA 57.924 47.619 0.00 0.00 0.00 4.02
53 54 2.751259 TGGTATCGTCAGTGTAGTGGAC 59.249 50.000 0.00 0.00 0.00 4.02
58 59 2.904011 GTCAGTGTAGTGGACGAGAG 57.096 55.000 0.00 0.00 0.00 3.20
59 60 2.424557 GTCAGTGTAGTGGACGAGAGA 58.575 52.381 0.00 0.00 0.00 3.10
60 61 2.417239 GTCAGTGTAGTGGACGAGAGAG 59.583 54.545 0.00 0.00 0.00 3.20
61 62 1.740585 CAGTGTAGTGGACGAGAGAGG 59.259 57.143 0.00 0.00 0.00 3.69
62 63 1.629353 AGTGTAGTGGACGAGAGAGGA 59.371 52.381 0.00 0.00 0.00 3.71
63 64 2.011222 GTGTAGTGGACGAGAGAGGAG 58.989 57.143 0.00 0.00 0.00 3.69
64 65 1.065345 TGTAGTGGACGAGAGAGGAGG 60.065 57.143 0.00 0.00 0.00 4.30
65 66 0.107116 TAGTGGACGAGAGAGGAGGC 60.107 60.000 0.00 0.00 0.00 4.70
66 67 2.043852 TGGACGAGAGAGGAGGCC 60.044 66.667 0.00 0.00 0.00 5.19
67 68 3.213402 GGACGAGAGAGGAGGCCG 61.213 72.222 0.00 0.00 0.00 6.13
68 69 2.124653 GACGAGAGAGGAGGCCGA 60.125 66.667 0.00 0.00 0.00 5.54
69 70 2.124487 ACGAGAGAGGAGGCCGAG 60.124 66.667 0.00 0.00 0.00 4.63
70 71 2.190843 CGAGAGAGGAGGCCGAGA 59.809 66.667 0.00 0.00 0.00 4.04
71 72 1.228124 CGAGAGAGGAGGCCGAGAT 60.228 63.158 0.00 0.00 0.00 2.75
72 73 1.514678 CGAGAGAGGAGGCCGAGATG 61.515 65.000 0.00 0.00 0.00 2.90
73 74 1.152567 AGAGAGGAGGCCGAGATGG 60.153 63.158 0.00 0.00 42.50 3.51
74 75 1.456705 GAGAGGAGGCCGAGATGGT 60.457 63.158 0.00 0.00 41.21 3.55
75 76 1.456705 AGAGGAGGCCGAGATGGTC 60.457 63.158 0.00 0.00 45.43 4.02
84 85 3.197614 GAGATGGTCGACGCTGGA 58.802 61.111 9.92 0.00 0.00 3.86
85 86 1.511305 GAGATGGTCGACGCTGGAA 59.489 57.895 9.92 0.00 0.00 3.53
86 87 0.108804 GAGATGGTCGACGCTGGAAA 60.109 55.000 9.92 0.00 0.00 3.13
87 88 0.389948 AGATGGTCGACGCTGGAAAC 60.390 55.000 9.92 0.00 0.00 2.78
88 89 1.683790 GATGGTCGACGCTGGAAACG 61.684 60.000 9.92 0.00 0.00 3.60
89 90 2.049802 GGTCGACGCTGGAAACGA 60.050 61.111 9.92 0.00 0.00 3.85
90 91 3.144605 GTCGACGCTGGAAACGAC 58.855 61.111 0.00 0.00 45.51 4.34
91 92 3.036577 TCGACGCTGGAAACGACT 58.963 55.556 0.00 0.00 0.00 4.18
92 93 1.081641 TCGACGCTGGAAACGACTC 60.082 57.895 0.00 0.00 0.00 3.36
93 94 2.087009 CGACGCTGGAAACGACTCC 61.087 63.158 0.00 0.00 35.88 3.85
94 95 1.006571 GACGCTGGAAACGACTCCA 60.007 57.895 9.39 9.39 43.45 3.86
101 102 2.313317 TGGAAACGACTCCAGTGTAGT 58.687 47.619 6.20 0.00 40.71 2.73
102 103 3.489355 TGGAAACGACTCCAGTGTAGTA 58.511 45.455 6.20 0.00 40.71 1.82
103 104 3.504906 TGGAAACGACTCCAGTGTAGTAG 59.495 47.826 6.20 0.00 40.71 2.57
104 105 3.119566 GGAAACGACTCCAGTGTAGTAGG 60.120 52.174 1.31 0.00 35.36 3.18
105 106 2.125773 ACGACTCCAGTGTAGTAGGG 57.874 55.000 1.31 0.00 0.00 3.53
106 107 0.739561 CGACTCCAGTGTAGTAGGGC 59.260 60.000 0.00 0.00 0.00 5.19
107 108 0.739561 GACTCCAGTGTAGTAGGGCG 59.260 60.000 0.00 0.00 0.00 6.13
108 109 0.330604 ACTCCAGTGTAGTAGGGCGA 59.669 55.000 0.00 0.00 0.00 5.54
109 110 1.025812 CTCCAGTGTAGTAGGGCGAG 58.974 60.000 0.00 0.00 0.00 5.03
110 111 0.622136 TCCAGTGTAGTAGGGCGAGA 59.378 55.000 0.00 0.00 0.00 4.04
111 112 1.214673 TCCAGTGTAGTAGGGCGAGAT 59.785 52.381 0.00 0.00 0.00 2.75
112 113 2.440627 TCCAGTGTAGTAGGGCGAGATA 59.559 50.000 0.00 0.00 0.00 1.98
113 114 2.814919 CCAGTGTAGTAGGGCGAGATAG 59.185 54.545 0.00 0.00 0.00 2.08
114 115 3.496337 CCAGTGTAGTAGGGCGAGATAGA 60.496 52.174 0.00 0.00 0.00 1.98
115 116 3.749088 CAGTGTAGTAGGGCGAGATAGAG 59.251 52.174 0.00 0.00 0.00 2.43
116 117 3.075884 GTGTAGTAGGGCGAGATAGAGG 58.924 54.545 0.00 0.00 0.00 3.69
117 118 2.977580 TGTAGTAGGGCGAGATAGAGGA 59.022 50.000 0.00 0.00 0.00 3.71
118 119 2.871096 AGTAGGGCGAGATAGAGGAG 57.129 55.000 0.00 0.00 0.00 3.69
119 120 1.353022 AGTAGGGCGAGATAGAGGAGG 59.647 57.143 0.00 0.00 0.00 4.30
120 121 0.038455 TAGGGCGAGATAGAGGAGGC 59.962 60.000 0.00 0.00 0.00 4.70
121 122 2.279810 GGGCGAGATAGAGGAGGCC 61.280 68.421 0.00 0.00 40.27 5.19
122 123 1.531840 GGCGAGATAGAGGAGGCCA 60.532 63.158 5.01 0.00 40.24 5.36
123 124 1.115930 GGCGAGATAGAGGAGGCCAA 61.116 60.000 5.01 0.00 40.24 4.52
124 125 0.316841 GCGAGATAGAGGAGGCCAAG 59.683 60.000 5.01 0.00 0.00 3.61
125 126 1.988293 CGAGATAGAGGAGGCCAAGA 58.012 55.000 5.01 0.00 0.00 3.02
126 127 2.524306 CGAGATAGAGGAGGCCAAGAT 58.476 52.381 5.01 0.00 0.00 2.40
127 128 2.230992 CGAGATAGAGGAGGCCAAGATG 59.769 54.545 5.01 0.00 0.00 2.90
128 129 3.505386 GAGATAGAGGAGGCCAAGATGA 58.495 50.000 5.01 0.00 0.00 2.92
129 130 4.095946 GAGATAGAGGAGGCCAAGATGAT 58.904 47.826 5.01 0.00 0.00 2.45
130 131 4.095946 AGATAGAGGAGGCCAAGATGATC 58.904 47.826 5.01 0.67 0.00 2.92
131 132 1.047002 AGAGGAGGCCAAGATGATCG 58.953 55.000 5.01 0.00 0.00 3.69
132 133 1.043816 GAGGAGGCCAAGATGATCGA 58.956 55.000 5.01 0.00 0.00 3.59
133 134 0.755686 AGGAGGCCAAGATGATCGAC 59.244 55.000 5.01 0.00 0.00 4.20
134 135 0.250081 GGAGGCCAAGATGATCGACC 60.250 60.000 5.01 0.00 0.00 4.79
135 136 0.250081 GAGGCCAAGATGATCGACCC 60.250 60.000 5.01 0.00 0.00 4.46
136 137 1.227973 GGCCAAGATGATCGACCCC 60.228 63.158 0.00 0.00 0.00 4.95
137 138 1.595382 GCCAAGATGATCGACCCCG 60.595 63.158 0.00 0.00 37.07 5.73
138 139 1.823295 CCAAGATGATCGACCCCGT 59.177 57.895 0.00 0.00 37.05 5.28
139 140 0.249489 CCAAGATGATCGACCCCGTC 60.249 60.000 0.00 0.00 37.05 4.79
181 182 4.182315 CGCGCCATTGCAGCATCA 62.182 61.111 0.00 0.00 37.02 3.07
182 183 2.278596 GCGCCATTGCAGCATCAG 60.279 61.111 0.00 0.00 37.11 2.90
183 184 3.060020 GCGCCATTGCAGCATCAGT 62.060 57.895 0.00 0.00 37.11 3.41
184 185 1.226575 CGCCATTGCAGCATCAGTG 60.227 57.895 0.00 0.00 37.32 3.66
197 198 2.477825 CATCAGTGCAATAGGAGGACG 58.522 52.381 0.00 0.00 32.12 4.79
198 199 1.847328 TCAGTGCAATAGGAGGACGA 58.153 50.000 0.00 0.00 32.12 4.20
199 200 1.476891 TCAGTGCAATAGGAGGACGAC 59.523 52.381 0.00 0.00 32.12 4.34
200 201 1.204704 CAGTGCAATAGGAGGACGACA 59.795 52.381 0.00 0.00 32.12 4.35
201 202 1.478510 AGTGCAATAGGAGGACGACAG 59.521 52.381 0.00 0.00 32.12 3.51
202 203 1.476891 GTGCAATAGGAGGACGACAGA 59.523 52.381 0.00 0.00 0.00 3.41
203 204 1.751351 TGCAATAGGAGGACGACAGAG 59.249 52.381 0.00 0.00 0.00 3.35
204 205 2.025155 GCAATAGGAGGACGACAGAGA 58.975 52.381 0.00 0.00 0.00 3.10
205 206 2.034053 GCAATAGGAGGACGACAGAGAG 59.966 54.545 0.00 0.00 0.00 3.20
206 207 3.283751 CAATAGGAGGACGACAGAGAGT 58.716 50.000 0.00 0.00 0.00 3.24
207 208 4.452825 CAATAGGAGGACGACAGAGAGTA 58.547 47.826 0.00 0.00 0.00 2.59
208 209 2.702592 AGGAGGACGACAGAGAGTAG 57.297 55.000 0.00 0.00 0.00 2.57
209 210 1.210967 AGGAGGACGACAGAGAGTAGG 59.789 57.143 0.00 0.00 0.00 3.18
210 211 1.018910 GAGGACGACAGAGAGTAGGC 58.981 60.000 0.00 0.00 0.00 3.93
211 212 2.108568 GGACGACAGAGAGTAGGCC 58.891 63.158 0.00 0.00 44.22 5.19
212 213 1.716826 GGACGACAGAGAGTAGGCCG 61.717 65.000 0.00 0.00 41.46 6.13
213 214 0.743701 GACGACAGAGAGTAGGCCGA 60.744 60.000 0.00 0.00 0.00 5.54
214 215 0.745128 ACGACAGAGAGTAGGCCGAG 60.745 60.000 0.00 0.00 0.00 4.63
215 216 0.462225 CGACAGAGAGTAGGCCGAGA 60.462 60.000 0.00 0.00 0.00 4.04
216 217 1.812324 CGACAGAGAGTAGGCCGAGAT 60.812 57.143 0.00 0.00 0.00 2.75
217 218 1.606668 GACAGAGAGTAGGCCGAGATG 59.393 57.143 0.00 0.00 0.00 2.90
218 219 1.213182 ACAGAGAGTAGGCCGAGATGA 59.787 52.381 0.00 0.00 0.00 2.92
219 220 1.879380 CAGAGAGTAGGCCGAGATGAG 59.121 57.143 0.00 0.00 0.00 2.90
220 221 1.493022 AGAGAGTAGGCCGAGATGAGT 59.507 52.381 0.00 0.00 0.00 3.41
221 222 1.606668 GAGAGTAGGCCGAGATGAGTG 59.393 57.143 0.00 0.00 0.00 3.51
222 223 1.213182 AGAGTAGGCCGAGATGAGTGA 59.787 52.381 0.00 0.00 0.00 3.41
223 224 1.335496 GAGTAGGCCGAGATGAGTGAC 59.665 57.143 0.00 0.00 0.00 3.67
224 225 0.029567 GTAGGCCGAGATGAGTGACG 59.970 60.000 0.00 0.00 0.00 4.35
225 226 1.725557 TAGGCCGAGATGAGTGACGC 61.726 60.000 0.00 0.00 0.00 5.19
226 227 2.492090 GCCGAGATGAGTGACGCT 59.508 61.111 0.00 0.00 0.00 5.07
227 228 1.875813 GCCGAGATGAGTGACGCTG 60.876 63.158 0.00 0.00 0.00 5.18
228 229 1.226802 CCGAGATGAGTGACGCTGG 60.227 63.158 0.00 0.00 0.00 4.85
229 230 1.657751 CCGAGATGAGTGACGCTGGA 61.658 60.000 0.00 0.00 0.00 3.86
230 231 0.171231 CGAGATGAGTGACGCTGGAA 59.829 55.000 0.00 0.00 0.00 3.53
231 232 1.402852 CGAGATGAGTGACGCTGGAAA 60.403 52.381 0.00 0.00 0.00 3.13
232 233 1.996191 GAGATGAGTGACGCTGGAAAC 59.004 52.381 0.00 0.00 0.00 2.78
233 234 0.716108 GATGAGTGACGCTGGAAACG 59.284 55.000 0.00 0.00 0.00 3.60
234 235 0.317160 ATGAGTGACGCTGGAAACGA 59.683 50.000 0.00 0.00 0.00 3.85
235 236 0.596600 TGAGTGACGCTGGAAACGAC 60.597 55.000 0.00 0.00 0.00 4.34
236 237 0.318784 GAGTGACGCTGGAAACGACT 60.319 55.000 0.00 0.00 0.00 4.18
237 238 0.318784 AGTGACGCTGGAAACGACTC 60.319 55.000 0.00 0.00 0.00 3.36
238 239 0.318784 GTGACGCTGGAAACGACTCT 60.319 55.000 0.00 0.00 0.00 3.24
239 240 1.068748 GTGACGCTGGAAACGACTCTA 60.069 52.381 0.00 0.00 0.00 2.43
240 241 1.199327 TGACGCTGGAAACGACTCTAG 59.801 52.381 0.00 0.00 0.00 2.43
241 242 1.199558 GACGCTGGAAACGACTCTAGT 59.800 52.381 0.00 0.00 0.00 2.57
242 243 1.068472 ACGCTGGAAACGACTCTAGTG 60.068 52.381 11.65 11.65 39.55 2.74
243 244 1.068472 CGCTGGAAACGACTCTAGTGT 60.068 52.381 0.00 0.00 31.73 3.55
244 245 2.161012 CGCTGGAAACGACTCTAGTGTA 59.839 50.000 0.00 0.00 31.73 2.90
245 246 3.728268 CGCTGGAAACGACTCTAGTGTAG 60.728 52.174 0.00 0.34 31.73 2.74
246 247 3.190953 GCTGGAAACGACTCTAGTGTAGT 59.809 47.826 5.05 5.05 0.00 2.73
247 248 4.394300 GCTGGAAACGACTCTAGTGTAGTA 59.606 45.833 10.50 0.00 0.00 1.82
248 249 5.447548 GCTGGAAACGACTCTAGTGTAGTAG 60.448 48.000 10.50 6.32 0.00 2.57
249 250 4.940046 TGGAAACGACTCTAGTGTAGTAGG 59.060 45.833 10.50 0.00 0.00 3.18
250 251 5.181748 GGAAACGACTCTAGTGTAGTAGGA 58.818 45.833 10.50 0.00 0.00 2.94
251 252 5.064579 GGAAACGACTCTAGTGTAGTAGGAC 59.935 48.000 10.50 4.19 0.00 3.85
252 253 3.779759 ACGACTCTAGTGTAGTAGGACG 58.220 50.000 8.67 4.15 0.00 4.79
253 254 2.539274 CGACTCTAGTGTAGTAGGACGC 59.461 54.545 0.00 0.00 0.00 5.19
254 255 2.539274 GACTCTAGTGTAGTAGGACGCG 59.461 54.545 3.53 3.53 34.94 6.01
344 347 2.988688 GCAATGCCGGCCGAAAAGA 61.989 57.895 30.73 2.60 0.00 2.52
402 407 6.446909 GAAGGATTCTTCAGATTAGGGGAT 57.553 41.667 9.02 0.00 46.45 3.85
413 418 7.743116 TCAGATTAGGGGATTTACTGTACAA 57.257 36.000 0.00 0.00 0.00 2.41
513 525 0.250858 CACCTCCTCAACCATGCACA 60.251 55.000 0.00 0.00 0.00 4.57
554 567 1.672854 AACCTTCCGATGATCGCCGA 61.673 55.000 9.74 0.00 38.82 5.54
618 631 2.847234 AACGGGCAGGTGGAGTGA 60.847 61.111 0.00 0.00 0.00 3.41
689 703 4.758251 CACATCCGCGCCTCCACA 62.758 66.667 0.00 0.00 0.00 4.17
806 821 3.425359 CGTATTCAGTGACCGTAACGAGT 60.425 47.826 0.00 0.00 0.00 4.18
851 867 3.822594 TCGTGCTTTCAACGCAATTAT 57.177 38.095 0.00 0.00 39.39 1.28
854 870 3.478516 CGTGCTTTCAACGCAATTATAGC 59.521 43.478 0.00 0.00 39.39 2.97
897 913 8.877864 TCTCTATATTTTTGGCAAGAGGAAAA 57.122 30.769 9.54 3.83 33.02 2.29
898 914 9.308000 TCTCTATATTTTTGGCAAGAGGAAAAA 57.692 29.630 9.54 3.19 34.13 1.94
899 915 9.578439 CTCTATATTTTTGGCAAGAGGAAAAAG 57.422 33.333 0.00 0.00 33.36 2.27
903 919 9.797642 ATATTTTTGGCAAGAGGAAAAAGAAAT 57.202 25.926 0.00 2.53 33.36 2.17
934 950 1.134788 AGCGCAAAGTAGATAAGGCGT 60.135 47.619 11.47 0.00 45.58 5.68
940 956 4.379499 GCAAAGTAGATAAGGCGTGCTTTT 60.379 41.667 0.00 0.00 0.00 2.27
941 957 4.946784 AAGTAGATAAGGCGTGCTTTTG 57.053 40.909 0.00 0.00 0.00 2.44
943 959 4.575885 AGTAGATAAGGCGTGCTTTTGAA 58.424 39.130 0.00 0.00 0.00 2.69
944 960 3.831715 AGATAAGGCGTGCTTTTGAAC 57.168 42.857 0.00 0.00 0.00 3.18
964 980 2.668212 CCCGAAGCGAAGTTGGCA 60.668 61.111 12.66 0.00 0.00 4.92
1056 1072 3.948719 TTCAACTCCCCGGCGCTT 61.949 61.111 7.64 0.00 0.00 4.68
1280 1296 1.328430 CCCGTCCTGTACCCTTCTCC 61.328 65.000 0.00 0.00 0.00 3.71
1316 1332 1.077429 ATCCTTTCCAGCGCCCTTC 60.077 57.895 2.29 0.00 0.00 3.46
1324 1340 0.967380 CCAGCGCCCTTCCATTTCTT 60.967 55.000 2.29 0.00 0.00 2.52
1326 1342 1.401905 CAGCGCCCTTCCATTTCTTAC 59.598 52.381 2.29 0.00 0.00 2.34
1327 1343 1.004277 AGCGCCCTTCCATTTCTTACA 59.996 47.619 2.29 0.00 0.00 2.41
1330 1346 2.678336 CGCCCTTCCATTTCTTACACTC 59.322 50.000 0.00 0.00 0.00 3.51
1346 1362 1.680651 CTCTGCTCCTCCTCCGTGT 60.681 63.158 0.00 0.00 0.00 4.49
1349 1365 2.435059 GCTCCTCCTCCGTGTTGC 60.435 66.667 0.00 0.00 0.00 4.17
1350 1366 2.948720 GCTCCTCCTCCGTGTTGCT 61.949 63.158 0.00 0.00 0.00 3.91
1351 1367 1.216710 CTCCTCCTCCGTGTTGCTC 59.783 63.158 0.00 0.00 0.00 4.26
1352 1368 2.125912 CCTCCTCCGTGTTGCTCG 60.126 66.667 0.00 0.00 0.00 5.03
1353 1369 2.811317 CTCCTCCGTGTTGCTCGC 60.811 66.667 0.00 0.00 0.00 5.03
1491 1507 0.390866 AGCGCCACTGTGATGAAGAG 60.391 55.000 9.86 0.00 0.00 2.85
1506 1522 2.653702 GAGGATCTCCGGGATGCG 59.346 66.667 15.26 0.00 45.63 4.73
1576 1592 1.177401 TCTGTGACCTCGGTGATGAG 58.823 55.000 0.00 0.00 35.70 2.90
1601 1617 1.817099 GGAGCTGGTCTTGATGCGG 60.817 63.158 6.83 0.00 0.00 5.69
2045 2061 6.839124 ATGTGATCAGCAAGGTAAAATGAA 57.161 33.333 0.00 0.00 0.00 2.57
2046 2062 6.258230 TGTGATCAGCAAGGTAAAATGAAG 57.742 37.500 0.00 0.00 0.00 3.02
2047 2063 5.769662 TGTGATCAGCAAGGTAAAATGAAGT 59.230 36.000 0.00 0.00 0.00 3.01
2048 2064 6.265196 TGTGATCAGCAAGGTAAAATGAAGTT 59.735 34.615 0.00 0.00 0.00 2.66
2049 2065 7.147976 GTGATCAGCAAGGTAAAATGAAGTTT 58.852 34.615 0.00 0.00 0.00 2.66
2050 2066 8.296713 GTGATCAGCAAGGTAAAATGAAGTTTA 58.703 33.333 0.00 0.00 0.00 2.01
2051 2067 8.855110 TGATCAGCAAGGTAAAATGAAGTTTAA 58.145 29.630 0.00 0.00 0.00 1.52
2052 2068 9.860898 GATCAGCAAGGTAAAATGAAGTTTAAT 57.139 29.630 0.00 0.00 0.00 1.40
2068 2084 8.023128 TGAAGTTTAATAGAACTGAAAGCATGC 58.977 33.333 10.51 10.51 39.68 4.06
2069 2085 7.452880 AGTTTAATAGAACTGAAAGCATGCA 57.547 32.000 21.98 0.00 38.39 3.96
2070 2086 7.885297 AGTTTAATAGAACTGAAAGCATGCAA 58.115 30.769 21.98 1.09 38.39 4.08
2071 2087 8.526147 AGTTTAATAGAACTGAAAGCATGCAAT 58.474 29.630 21.98 7.83 38.39 3.56
2072 2088 9.143631 GTTTAATAGAACTGAAAGCATGCAATT 57.856 29.630 21.98 14.52 37.60 2.32
2073 2089 8.692110 TTAATAGAACTGAAAGCATGCAATTG 57.308 30.769 21.98 0.00 37.60 2.32
2074 2090 4.595762 AGAACTGAAAGCATGCAATTGT 57.404 36.364 21.98 8.89 37.60 2.71
2075 2091 4.952460 AGAACTGAAAGCATGCAATTGTT 58.048 34.783 21.98 16.61 37.60 2.83
2076 2092 6.088016 AGAACTGAAAGCATGCAATTGTTA 57.912 33.333 21.98 2.94 37.60 2.41
2077 2093 6.154445 AGAACTGAAAGCATGCAATTGTTAG 58.846 36.000 21.98 13.34 37.60 2.34
2078 2094 4.813027 ACTGAAAGCATGCAATTGTTAGG 58.187 39.130 21.98 3.22 37.60 2.69
2079 2095 3.587923 TGAAAGCATGCAATTGTTAGGC 58.412 40.909 21.98 9.98 0.00 3.93
2080 2096 3.258872 TGAAAGCATGCAATTGTTAGGCT 59.741 39.130 21.98 15.07 0.00 4.58
2081 2097 3.967332 AAGCATGCAATTGTTAGGCTT 57.033 38.095 21.98 22.18 35.48 4.35
2082 2098 3.515330 AGCATGCAATTGTTAGGCTTC 57.485 42.857 21.98 0.00 0.00 3.86
2083 2099 2.167075 AGCATGCAATTGTTAGGCTTCC 59.833 45.455 21.98 0.00 0.00 3.46
2084 2100 2.094078 GCATGCAATTGTTAGGCTTCCA 60.094 45.455 14.21 0.00 0.00 3.53
2085 2101 3.777478 CATGCAATTGTTAGGCTTCCAG 58.223 45.455 7.40 0.00 0.00 3.86
2086 2102 3.153369 TGCAATTGTTAGGCTTCCAGA 57.847 42.857 7.40 0.00 0.00 3.86
2087 2103 2.819608 TGCAATTGTTAGGCTTCCAGAC 59.180 45.455 7.40 0.00 0.00 3.51
2088 2104 2.819608 GCAATTGTTAGGCTTCCAGACA 59.180 45.455 7.40 0.00 0.00 3.41
2089 2105 3.255642 GCAATTGTTAGGCTTCCAGACAA 59.744 43.478 7.40 0.00 35.94 3.18
2090 2106 4.082026 GCAATTGTTAGGCTTCCAGACAAT 60.082 41.667 7.40 9.53 40.41 2.71
2091 2107 5.567423 GCAATTGTTAGGCTTCCAGACAATT 60.567 40.000 16.66 16.66 44.26 2.32
2092 2108 5.649782 ATTGTTAGGCTTCCAGACAATTG 57.350 39.130 3.24 3.24 37.73 2.32
2093 2109 4.365514 TGTTAGGCTTCCAGACAATTGA 57.634 40.909 13.59 0.00 0.00 2.57
2094 2110 4.326826 TGTTAGGCTTCCAGACAATTGAG 58.673 43.478 13.59 0.00 0.00 3.02
2095 2111 4.041567 TGTTAGGCTTCCAGACAATTGAGA 59.958 41.667 13.59 0.33 0.00 3.27
2096 2112 3.347077 AGGCTTCCAGACAATTGAGAG 57.653 47.619 13.59 0.65 0.00 3.20
2097 2113 2.026449 AGGCTTCCAGACAATTGAGAGG 60.026 50.000 13.59 10.16 0.00 3.69
2098 2114 2.363683 GCTTCCAGACAATTGAGAGGG 58.636 52.381 13.59 8.03 0.00 4.30
2099 2115 2.290577 GCTTCCAGACAATTGAGAGGGT 60.291 50.000 13.59 0.00 0.00 4.34
2100 2116 3.341823 CTTCCAGACAATTGAGAGGGTG 58.658 50.000 13.59 3.68 0.00 4.61
2101 2117 2.619931 TCCAGACAATTGAGAGGGTGA 58.380 47.619 13.59 0.00 0.00 4.02
2102 2118 3.184628 TCCAGACAATTGAGAGGGTGAT 58.815 45.455 13.59 0.00 0.00 3.06
2103 2119 4.361783 TCCAGACAATTGAGAGGGTGATA 58.638 43.478 13.59 0.00 0.00 2.15
2104 2120 4.406972 TCCAGACAATTGAGAGGGTGATAG 59.593 45.833 13.59 0.00 0.00 2.08
2105 2121 4.163078 CCAGACAATTGAGAGGGTGATAGT 59.837 45.833 13.59 0.00 0.00 2.12
2106 2122 5.363868 CCAGACAATTGAGAGGGTGATAGTA 59.636 44.000 13.59 0.00 0.00 1.82
2107 2123 6.042552 CCAGACAATTGAGAGGGTGATAGTAT 59.957 42.308 13.59 0.00 0.00 2.12
2108 2124 7.233553 CCAGACAATTGAGAGGGTGATAGTATA 59.766 40.741 13.59 0.00 0.00 1.47
2109 2125 8.642432 CAGACAATTGAGAGGGTGATAGTATAA 58.358 37.037 13.59 0.00 0.00 0.98
2110 2126 9.386122 AGACAATTGAGAGGGTGATAGTATAAT 57.614 33.333 13.59 0.00 0.00 1.28
2155 2171 1.201181 GTGCGTTCAAATGGGTATGCA 59.799 47.619 0.00 0.00 0.00 3.96
2156 2172 1.472082 TGCGTTCAAATGGGTATGCAG 59.528 47.619 0.00 0.00 0.00 4.41
2165 2181 2.507407 TGGGTATGCAGTTTTCTCCC 57.493 50.000 0.00 0.00 31.77 4.30
2196 2212 5.102953 TGTACATGCTTTCTGGAGCTTAT 57.897 39.130 0.00 0.00 43.11 1.73
2205 2221 5.622914 GCTTTCTGGAGCTTATGCAATTCAA 60.623 40.000 3.16 0.00 42.74 2.69
2216 2232 7.604927 AGCTTATGCAATTCAAATGACACATTT 59.395 29.630 3.16 4.22 42.74 2.32
2304 2325 8.801299 TGAAATTTATGTGATCAGCAAGGTAAA 58.199 29.630 0.00 1.23 0.00 2.01
2312 2333 6.265196 TGTGATCAGCAAGGTAAAATGAAGTT 59.735 34.615 0.00 0.00 0.00 2.66
2343 2525 3.587923 TGAAAGCATGCAATTGTTAGGC 58.412 40.909 21.98 9.98 0.00 3.93
2353 2535 3.255642 GCAATTGTTAGGCTTCCAGACAA 59.744 43.478 7.40 0.00 35.94 3.18
2441 2628 6.127253 GGCATAAGTAGGTTGAGTAGGTTGTA 60.127 42.308 0.00 0.00 0.00 2.41
2504 2692 2.429250 TCTTCGATTCAGGGATTGCGTA 59.571 45.455 0.00 0.00 0.00 4.42
2510 2698 0.106708 TCAGGGATTGCGTATCTGCC 59.893 55.000 0.00 0.00 33.53 4.85
2544 2732 6.951256 AGTTCTTTTCAGTTTTCACTTTGC 57.049 33.333 0.00 0.00 0.00 3.68
2554 2742 3.684103 TTTCACTTTGCGAACGTTGAT 57.316 38.095 5.00 0.00 0.00 2.57
2566 2754 4.844522 GCGAACGTTGATTTCTTTCTAACC 59.155 41.667 5.00 0.00 0.00 2.85
2706 2894 1.135489 CAACTGGTGTGATCTGCATGC 60.135 52.381 11.82 11.82 0.00 4.06
2994 3182 6.032094 CCAAACAGCAAACATATAGCAGAAG 58.968 40.000 0.00 0.00 0.00 2.85
3017 3205 2.756840 AACTCCGTAAGTTACCTGCC 57.243 50.000 7.45 0.00 46.55 4.85
3030 3218 0.773644 ACCTGCCTGTCCAGTTCATT 59.226 50.000 0.00 0.00 0.00 2.57
3032 3220 2.242043 CCTGCCTGTCCAGTTCATTTT 58.758 47.619 0.00 0.00 0.00 1.82
3097 3286 5.620206 AGAAACATACCATTCAGTGTGACA 58.380 37.500 0.00 0.00 33.49 3.58
3174 3365 9.965824 CTAGAACAGGTTGTTTGATGTATTTTT 57.034 29.630 0.00 0.00 41.28 1.94
3203 3394 7.178274 TGAACAAGAAACATACCCTATTGCAAT 59.822 33.333 17.56 17.56 0.00 3.56
3204 3395 8.588290 AACAAGAAACATACCCTATTGCAATA 57.412 30.769 17.94 17.94 0.00 1.90
3219 3410 3.123050 TGCAATATCGATGGTTGTCTCG 58.877 45.455 19.83 0.00 36.25 4.04
3277 3468 4.099633 ACTGATCCTCCAATGAGTCTTGA 58.900 43.478 0.00 0.00 36.86 3.02
3301 3492 3.282021 GCAAGGCTTGATCAATGGTCTA 58.718 45.455 30.45 0.00 0.00 2.59
3333 3529 4.025360 TGAGCCCATATGAAACTGCAAAT 58.975 39.130 3.65 0.00 0.00 2.32
3350 3546 5.218885 TGCAAATACTGACAAAATGGTTCG 58.781 37.500 0.00 0.00 0.00 3.95
3388 3585 3.004326 GCATGCGGCCCAAACATGA 62.004 57.895 20.82 0.00 43.04 3.07
3389 3586 1.817881 CATGCGGCCCAAACATGAT 59.182 52.632 14.44 0.00 43.04 2.45
3395 3592 2.364632 CGGCCCAAACATGATTCTGTA 58.635 47.619 0.00 0.00 0.00 2.74
3397 3594 3.088532 GGCCCAAACATGATTCTGTACA 58.911 45.455 0.00 0.00 0.00 2.90
3405 3602 5.824904 ACATGATTCTGTACAATTCTGGC 57.175 39.130 0.00 0.00 0.00 4.85
3421 3618 2.158856 TCTGGCAGTGCATATTCTGGAG 60.159 50.000 18.61 0.00 32.94 3.86
3427 3624 3.110705 AGTGCATATTCTGGAGGTCACT 58.889 45.455 0.00 0.00 0.00 3.41
3428 3625 4.100035 CAGTGCATATTCTGGAGGTCACTA 59.900 45.833 0.00 0.00 32.92 2.74
3429 3626 4.716784 AGTGCATATTCTGGAGGTCACTAA 59.283 41.667 0.00 0.00 32.49 2.24
3430 3627 4.811557 GTGCATATTCTGGAGGTCACTAAC 59.188 45.833 0.00 0.00 0.00 2.34
3431 3628 4.716784 TGCATATTCTGGAGGTCACTAACT 59.283 41.667 0.00 0.00 0.00 2.24
3432 3629 5.163405 TGCATATTCTGGAGGTCACTAACTC 60.163 44.000 0.00 0.00 0.00 3.01
3433 3630 5.163405 GCATATTCTGGAGGTCACTAACTCA 60.163 44.000 0.00 0.00 35.45 3.41
3434 3631 4.810191 ATTCTGGAGGTCACTAACTCAC 57.190 45.455 0.00 0.00 35.45 3.51
3435 3632 3.527507 TCTGGAGGTCACTAACTCACT 57.472 47.619 0.00 0.00 35.45 3.41
3438 3635 6.323210 TCTGGAGGTCACTAACTCACTATA 57.677 41.667 0.00 0.00 35.45 1.31
3439 3636 6.358178 TCTGGAGGTCACTAACTCACTATAG 58.642 44.000 0.00 0.00 35.45 1.31
3445 3642 5.357314 GGTCACTAACTCACTATAGCTGTCA 59.643 44.000 0.00 0.00 0.00 3.58
3451 3648 3.181471 ACTCACTATAGCTGTCATGTGGC 60.181 47.826 0.00 0.00 0.00 5.01
3452 3649 2.765699 TCACTATAGCTGTCATGTGGCA 59.234 45.455 0.00 0.00 0.00 4.92
3455 3652 3.389002 ACTATAGCTGTCATGTGGCATGA 59.611 43.478 7.63 7.63 0.00 3.07
3534 3752 9.135189 CTTCTATGAGATATGAGGAGGATTAGG 57.865 40.741 0.00 0.00 0.00 2.69
3535 3753 8.412693 TCTATGAGATATGAGGAGGATTAGGA 57.587 38.462 0.00 0.00 0.00 2.94
3658 3915 3.989600 ATCTCTCCCTCTCATCTCCAA 57.010 47.619 0.00 0.00 0.00 3.53
3718 3975 2.361104 AATTGGCGGGCGACACAT 60.361 55.556 0.00 0.00 29.74 3.21
3736 3993 3.692593 CACATGATGCTTGGACTCATGAA 59.307 43.478 16.26 0.00 45.84 2.57
3813 4070 2.107950 TGCGGTATCTTTGACCCAAG 57.892 50.000 0.00 0.00 32.95 3.61
3817 4074 3.119955 GCGGTATCTTTGACCCAAGAAAC 60.120 47.826 0.00 0.00 32.95 2.78
3875 4132 2.830651 TGTTGTTTAACACTGGGGGT 57.169 45.000 0.00 0.00 41.66 4.95
3877 4134 3.553904 TGTTGTTTAACACTGGGGGTAC 58.446 45.455 0.00 0.00 41.66 3.34
3887 4144 0.389426 CTGGGGGTACAGAACGTTCG 60.389 60.000 21.87 18.19 40.97 3.95
3953 4210 2.125269 CCCGCCTTCCCAGTAACG 60.125 66.667 0.00 0.00 0.00 3.18
3965 4222 4.453751 TCCCAGTAACGGGCATAAATAAC 58.546 43.478 0.00 0.00 46.92 1.89
3997 4254 4.640771 TGCCACAAGAATCTTTCTACCT 57.359 40.909 0.00 0.00 39.61 3.08
4006 4263 0.178873 TCTTTCTACCTGGTGCCCCT 60.179 55.000 10.23 0.00 0.00 4.79
4007 4264 0.035056 CTTTCTACCTGGTGCCCCTG 60.035 60.000 10.23 0.00 0.00 4.45
4091 4349 1.601759 CCTGTCTGGCCCAAGTGTG 60.602 63.158 0.00 0.00 0.00 3.82
4211 4469 4.717279 TTTACCAACTGACCTAGGCTTT 57.283 40.909 9.30 0.00 0.00 3.51
4353 4627 5.222048 GGGTATATAATGCTTGGAAGTCCCA 60.222 44.000 0.00 0.00 44.93 4.37
4395 4669 6.206829 AGCGACATAGATATGTGCTAGTGTTA 59.793 38.462 19.35 0.00 46.20 2.41
4474 4748 7.970061 GCAATATGTCTACACAACAATGACATT 59.030 33.333 11.31 0.00 43.23 2.71
4482 4756 5.916318 ACACAACAATGACATTTTCCATGT 58.084 33.333 0.00 0.00 34.52 3.21
4513 4787 7.558161 TTAATAACTCTTGCATGTGATCCAG 57.442 36.000 8.47 0.00 0.00 3.86
4516 4790 1.400846 CTCTTGCATGTGATCCAGCAC 59.599 52.381 0.00 0.00 36.62 4.40
4561 4835 8.996988 TGTTTTCAAATAAGACACGTTATGAC 57.003 30.769 0.00 0.00 0.00 3.06
4574 4848 1.013596 TTATGACGATGCTTTGGCGG 58.986 50.000 0.00 0.00 42.25 6.13
4639 4913 2.108952 AGGATGGCTTTCACTTTCAGGT 59.891 45.455 0.00 0.00 0.00 4.00
4692 4966 2.810274 GCTGACTCATCTGCAAACTTCA 59.190 45.455 1.76 0.00 46.24 3.02
4769 5043 2.679837 GCACTTCGATTCATGTGGATGT 59.320 45.455 0.00 0.00 0.00 3.06
5062 5336 0.251653 TACTTCCGTGCTCCTCCTGT 60.252 55.000 0.00 0.00 0.00 4.00
5117 5397 9.743057 GATTTCTCTTATGATATACTCCATCCG 57.257 37.037 0.00 0.00 0.00 4.18
5118 5398 8.651589 TTTCTCTTATGATATACTCCATCCGT 57.348 34.615 0.00 0.00 0.00 4.69
5119 5399 7.867305 TCTCTTATGATATACTCCATCCGTC 57.133 40.000 0.00 0.00 0.00 4.79
5120 5400 6.829298 TCTCTTATGATATACTCCATCCGTCC 59.171 42.308 0.00 0.00 0.00 4.79
5121 5401 5.892119 TCTTATGATATACTCCATCCGTCCC 59.108 44.000 0.00 0.00 0.00 4.46
5122 5402 3.536075 TGATATACTCCATCCGTCCCA 57.464 47.619 0.00 0.00 0.00 4.37
5123 5403 3.851979 TGATATACTCCATCCGTCCCAA 58.148 45.455 0.00 0.00 0.00 4.12
5124 5404 4.228010 TGATATACTCCATCCGTCCCAAA 58.772 43.478 0.00 0.00 0.00 3.28
5125 5405 4.656575 TGATATACTCCATCCGTCCCAAAA 59.343 41.667 0.00 0.00 0.00 2.44
5126 5406 5.309543 TGATATACTCCATCCGTCCCAAAAT 59.690 40.000 0.00 0.00 0.00 1.82
5127 5407 6.499000 TGATATACTCCATCCGTCCCAAAATA 59.501 38.462 0.00 0.00 0.00 1.40
5128 5408 5.640158 ATACTCCATCCGTCCCAAAATAA 57.360 39.130 0.00 0.00 0.00 1.40
5129 5409 3.886123 ACTCCATCCGTCCCAAAATAAG 58.114 45.455 0.00 0.00 0.00 1.73
5130 5410 3.265995 ACTCCATCCGTCCCAAAATAAGT 59.734 43.478 0.00 0.00 0.00 2.24
5131 5411 3.616219 TCCATCCGTCCCAAAATAAGTG 58.384 45.455 0.00 0.00 0.00 3.16
5132 5412 3.009695 TCCATCCGTCCCAAAATAAGTGT 59.990 43.478 0.00 0.00 0.00 3.55
5133 5413 3.377172 CCATCCGTCCCAAAATAAGTGTC 59.623 47.826 0.00 0.00 0.00 3.67
5134 5414 4.261801 CATCCGTCCCAAAATAAGTGTCT 58.738 43.478 0.00 0.00 0.00 3.41
5135 5415 3.934068 TCCGTCCCAAAATAAGTGTCTC 58.066 45.455 0.00 0.00 0.00 3.36
5136 5416 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
5137 5417 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5138 5418 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
5139 5419 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
5140 5420 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
5141 5421 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
5142 5422 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
5143 5423 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
5144 5424 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
5145 5425 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
5146 5426 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
5147 5427 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
5148 5428 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
5149 5429 8.535690 AATAAGTGTCTCAAGCTTAGTACAAC 57.464 34.615 0.00 0.00 0.00 3.32
5150 5430 5.793030 AGTGTCTCAAGCTTAGTACAACT 57.207 39.130 0.00 0.00 0.00 3.16
5151 5431 6.163135 AGTGTCTCAAGCTTAGTACAACTT 57.837 37.500 0.00 0.00 0.00 2.66
5152 5432 6.583562 AGTGTCTCAAGCTTAGTACAACTTT 58.416 36.000 0.00 0.00 0.00 2.66
5153 5433 6.480320 AGTGTCTCAAGCTTAGTACAACTTTG 59.520 38.462 0.00 0.00 0.00 2.77
5154 5434 6.258068 GTGTCTCAAGCTTAGTACAACTTTGT 59.742 38.462 0.00 0.00 44.86 2.83
5155 5435 7.437267 GTGTCTCAAGCTTAGTACAACTTTGTA 59.563 37.037 0.00 0.00 42.35 2.41
5191 5471 9.673454 GTACAAAGTTAAGACACTTATTTTGGG 57.327 33.333 19.96 8.06 35.87 4.12
5192 5472 8.528044 ACAAAGTTAAGACACTTATTTTGGGA 57.472 30.769 19.96 0.00 35.87 4.37
5193 5473 8.410912 ACAAAGTTAAGACACTTATTTTGGGAC 58.589 33.333 19.96 6.58 35.87 4.46
5194 5474 6.796705 AGTTAAGACACTTATTTTGGGACG 57.203 37.500 0.00 0.00 0.00 4.79
5195 5475 5.704053 AGTTAAGACACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 0.00 4.79
5196 5476 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
5197 5477 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
5198 5478 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5199 5479 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
5200 5480 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5201 5481 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5219 5499 6.321821 AGGGAGTATTTGTTTATGCTGGTA 57.678 37.500 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.820226 TGCATTCTCCTCCTCTGTCG 59.180 55.000 0.00 0.00 0.00 4.35
4 5 0.540923 GCACTGCATTCTCCTCCTCT 59.459 55.000 0.00 0.00 0.00 3.69
5 6 0.540923 AGCACTGCATTCTCCTCCTC 59.459 55.000 3.30 0.00 0.00 3.71
6 7 0.540923 GAGCACTGCATTCTCCTCCT 59.459 55.000 3.30 0.00 0.00 3.69
7 8 0.251354 TGAGCACTGCATTCTCCTCC 59.749 55.000 3.30 0.00 0.00 4.30
9 10 0.390866 CGTGAGCACTGCATTCTCCT 60.391 55.000 3.30 0.00 0.00 3.69
10 11 2.084844 CGTGAGCACTGCATTCTCC 58.915 57.895 3.30 0.58 0.00 3.71
23 24 0.102300 TGACGATACCATGGCGTGAG 59.898 55.000 18.83 6.91 38.51 3.51
24 25 0.102300 CTGACGATACCATGGCGTGA 59.898 55.000 18.83 10.85 38.51 4.35
25 26 0.179111 ACTGACGATACCATGGCGTG 60.179 55.000 18.83 9.26 38.51 5.34
26 27 0.179111 CACTGACGATACCATGGCGT 60.179 55.000 13.04 13.99 41.45 5.68
27 28 0.179111 ACACTGACGATACCATGGCG 60.179 55.000 13.04 10.38 0.00 5.69
28 29 2.100916 ACTACACTGACGATACCATGGC 59.899 50.000 13.04 0.00 0.00 4.40
29 30 3.490933 CCACTACACTGACGATACCATGG 60.491 52.174 11.19 11.19 0.00 3.66
30 31 3.380320 TCCACTACACTGACGATACCATG 59.620 47.826 0.00 0.00 0.00 3.66
31 32 3.380637 GTCCACTACACTGACGATACCAT 59.619 47.826 0.00 0.00 0.00 3.55
32 33 2.751259 GTCCACTACACTGACGATACCA 59.249 50.000 0.00 0.00 0.00 3.25
33 34 3.417690 GTCCACTACACTGACGATACC 57.582 52.381 0.00 0.00 0.00 2.73
39 40 2.417239 CTCTCTCGTCCACTACACTGAC 59.583 54.545 0.00 0.00 0.00 3.51
40 41 2.615747 CCTCTCTCGTCCACTACACTGA 60.616 54.545 0.00 0.00 0.00 3.41
41 42 1.740585 CCTCTCTCGTCCACTACACTG 59.259 57.143 0.00 0.00 0.00 3.66
42 43 1.629353 TCCTCTCTCGTCCACTACACT 59.371 52.381 0.00 0.00 0.00 3.55
43 44 2.011222 CTCCTCTCTCGTCCACTACAC 58.989 57.143 0.00 0.00 0.00 2.90
44 45 1.065345 CCTCCTCTCTCGTCCACTACA 60.065 57.143 0.00 0.00 0.00 2.74
45 46 1.670791 CCTCCTCTCTCGTCCACTAC 58.329 60.000 0.00 0.00 0.00 2.73
46 47 0.107116 GCCTCCTCTCTCGTCCACTA 60.107 60.000 0.00 0.00 0.00 2.74
47 48 1.379309 GCCTCCTCTCTCGTCCACT 60.379 63.158 0.00 0.00 0.00 4.00
48 49 2.419739 GGCCTCCTCTCTCGTCCAC 61.420 68.421 0.00 0.00 0.00 4.02
49 50 2.043852 GGCCTCCTCTCTCGTCCA 60.044 66.667 0.00 0.00 0.00 4.02
50 51 3.213402 CGGCCTCCTCTCTCGTCC 61.213 72.222 0.00 0.00 0.00 4.79
51 52 2.124653 TCGGCCTCCTCTCTCGTC 60.125 66.667 0.00 0.00 0.00 4.20
52 53 1.990160 ATCTCGGCCTCCTCTCTCGT 61.990 60.000 0.00 0.00 0.00 4.18
53 54 1.228124 ATCTCGGCCTCCTCTCTCG 60.228 63.158 0.00 0.00 0.00 4.04
54 55 1.178534 CCATCTCGGCCTCCTCTCTC 61.179 65.000 0.00 0.00 0.00 3.20
55 56 1.152567 CCATCTCGGCCTCCTCTCT 60.153 63.158 0.00 0.00 0.00 3.10
56 57 1.456705 ACCATCTCGGCCTCCTCTC 60.457 63.158 0.00 0.00 39.03 3.20
57 58 1.456705 GACCATCTCGGCCTCCTCT 60.457 63.158 0.00 0.00 39.03 3.69
58 59 2.851071 CGACCATCTCGGCCTCCTC 61.851 68.421 0.00 0.00 38.87 3.71
59 60 2.835431 CGACCATCTCGGCCTCCT 60.835 66.667 0.00 0.00 38.87 3.69
60 61 2.833582 TCGACCATCTCGGCCTCC 60.834 66.667 0.00 0.00 43.16 4.30
61 62 2.413765 GTCGACCATCTCGGCCTC 59.586 66.667 3.51 0.00 41.45 4.70
62 63 3.518998 CGTCGACCATCTCGGCCT 61.519 66.667 10.58 0.00 44.67 5.19
64 65 4.194720 AGCGTCGACCATCTCGGC 62.195 66.667 10.58 5.57 44.01 5.54
65 66 2.278206 CAGCGTCGACCATCTCGG 60.278 66.667 10.58 0.00 43.16 4.63
66 67 2.266376 TTCCAGCGTCGACCATCTCG 62.266 60.000 10.58 0.00 44.44 4.04
67 68 0.108804 TTTCCAGCGTCGACCATCTC 60.109 55.000 10.58 0.00 0.00 2.75
68 69 0.389948 GTTTCCAGCGTCGACCATCT 60.390 55.000 10.58 1.74 0.00 2.90
69 70 1.683790 CGTTTCCAGCGTCGACCATC 61.684 60.000 10.58 0.00 0.00 3.51
70 71 1.736645 CGTTTCCAGCGTCGACCAT 60.737 57.895 10.58 0.00 0.00 3.55
71 72 2.355363 CGTTTCCAGCGTCGACCA 60.355 61.111 10.58 0.00 0.00 4.02
72 73 2.049802 TCGTTTCCAGCGTCGACC 60.050 61.111 10.58 2.76 0.00 4.79
73 74 3.144605 GTCGTTTCCAGCGTCGAC 58.855 61.111 5.18 5.18 43.81 4.20
74 75 1.081641 GAGTCGTTTCCAGCGTCGA 60.082 57.895 0.00 0.00 0.00 4.20
75 76 2.087009 GGAGTCGTTTCCAGCGTCG 61.087 63.158 3.57 0.00 37.20 5.12
76 77 1.006571 TGGAGTCGTTTCCAGCGTC 60.007 57.895 6.56 0.00 42.24 5.19
77 78 3.134879 TGGAGTCGTTTCCAGCGT 58.865 55.556 6.56 0.00 42.24 5.07
81 82 2.313317 ACTACACTGGAGTCGTTTCCA 58.687 47.619 9.66 9.66 44.84 3.53
82 83 3.119566 CCTACTACACTGGAGTCGTTTCC 60.120 52.174 0.00 1.69 37.77 3.13
83 84 3.119566 CCCTACTACACTGGAGTCGTTTC 60.120 52.174 0.00 0.00 0.00 2.78
84 85 2.824341 CCCTACTACACTGGAGTCGTTT 59.176 50.000 0.00 0.00 0.00 3.60
85 86 2.444421 CCCTACTACACTGGAGTCGTT 58.556 52.381 0.00 0.00 0.00 3.85
86 87 1.954258 GCCCTACTACACTGGAGTCGT 60.954 57.143 0.00 0.00 0.00 4.34
87 88 0.739561 GCCCTACTACACTGGAGTCG 59.260 60.000 0.00 0.00 0.00 4.18
88 89 0.739561 CGCCCTACTACACTGGAGTC 59.260 60.000 0.00 0.00 0.00 3.36
89 90 0.330604 TCGCCCTACTACACTGGAGT 59.669 55.000 0.00 0.00 0.00 3.85
90 91 1.025812 CTCGCCCTACTACACTGGAG 58.974 60.000 0.00 0.00 0.00 3.86
91 92 0.622136 TCTCGCCCTACTACACTGGA 59.378 55.000 0.00 0.00 0.00 3.86
92 93 1.693627 ATCTCGCCCTACTACACTGG 58.306 55.000 0.00 0.00 0.00 4.00
93 94 3.741249 TCTATCTCGCCCTACTACACTG 58.259 50.000 0.00 0.00 0.00 3.66
94 95 3.244630 CCTCTATCTCGCCCTACTACACT 60.245 52.174 0.00 0.00 0.00 3.55
95 96 3.075884 CCTCTATCTCGCCCTACTACAC 58.924 54.545 0.00 0.00 0.00 2.90
96 97 2.977580 TCCTCTATCTCGCCCTACTACA 59.022 50.000 0.00 0.00 0.00 2.74
97 98 3.602483 CTCCTCTATCTCGCCCTACTAC 58.398 54.545 0.00 0.00 0.00 2.73
98 99 2.572556 CCTCCTCTATCTCGCCCTACTA 59.427 54.545 0.00 0.00 0.00 1.82
99 100 1.353022 CCTCCTCTATCTCGCCCTACT 59.647 57.143 0.00 0.00 0.00 2.57
100 101 1.828979 CCTCCTCTATCTCGCCCTAC 58.171 60.000 0.00 0.00 0.00 3.18
101 102 0.038455 GCCTCCTCTATCTCGCCCTA 59.962 60.000 0.00 0.00 0.00 3.53
102 103 1.228737 GCCTCCTCTATCTCGCCCT 60.229 63.158 0.00 0.00 0.00 5.19
103 104 2.279810 GGCCTCCTCTATCTCGCCC 61.280 68.421 0.00 0.00 0.00 6.13
104 105 1.115930 TTGGCCTCCTCTATCTCGCC 61.116 60.000 3.32 0.00 36.91 5.54
105 106 0.316841 CTTGGCCTCCTCTATCTCGC 59.683 60.000 3.32 0.00 0.00 5.03
106 107 1.988293 TCTTGGCCTCCTCTATCTCG 58.012 55.000 3.32 0.00 0.00 4.04
107 108 3.505386 TCATCTTGGCCTCCTCTATCTC 58.495 50.000 3.32 0.00 0.00 2.75
108 109 3.627041 TCATCTTGGCCTCCTCTATCT 57.373 47.619 3.32 0.00 0.00 1.98
109 110 3.119173 CGATCATCTTGGCCTCCTCTATC 60.119 52.174 3.32 0.00 0.00 2.08
110 111 2.830923 CGATCATCTTGGCCTCCTCTAT 59.169 50.000 3.32 0.00 0.00 1.98
111 112 2.158460 TCGATCATCTTGGCCTCCTCTA 60.158 50.000 3.32 0.00 0.00 2.43
112 113 1.047002 CGATCATCTTGGCCTCCTCT 58.953 55.000 3.32 0.00 0.00 3.69
113 114 1.043816 TCGATCATCTTGGCCTCCTC 58.956 55.000 3.32 0.00 0.00 3.71
114 115 0.755686 GTCGATCATCTTGGCCTCCT 59.244 55.000 3.32 0.00 0.00 3.69
115 116 0.250081 GGTCGATCATCTTGGCCTCC 60.250 60.000 3.32 0.00 29.31 4.30
116 117 0.250081 GGGTCGATCATCTTGGCCTC 60.250 60.000 3.32 0.00 32.98 4.70
117 118 1.700042 GGGGTCGATCATCTTGGCCT 61.700 60.000 3.32 0.00 32.98 5.19
118 119 1.227973 GGGGTCGATCATCTTGGCC 60.228 63.158 0.00 0.00 31.39 5.36
119 120 1.595382 CGGGGTCGATCATCTTGGC 60.595 63.158 0.00 0.00 39.00 4.52
120 121 0.249489 GACGGGGTCGATCATCTTGG 60.249 60.000 0.00 0.00 40.11 3.61
121 122 3.274393 GACGGGGTCGATCATCTTG 57.726 57.895 0.00 0.00 40.11 3.02
144 145 4.374702 CACTGCAGTTCGCCGTGC 62.375 66.667 18.94 0.00 46.76 5.34
146 147 2.967076 CACACTGCAGTTCGCCGT 60.967 61.111 18.94 8.97 41.33 5.68
147 148 4.374702 GCACACTGCAGTTCGCCG 62.375 66.667 18.94 8.22 44.26 6.46
148 149 4.374702 CGCACACTGCAGTTCGCC 62.375 66.667 24.50 11.20 45.36 5.54
150 151 4.707840 CGCGCACACTGCAGTTCG 62.708 66.667 18.94 20.67 45.36 3.95
164 165 4.182315 TGATGCTGCAATGGCGCG 62.182 61.111 6.36 0.00 45.35 6.86
165 166 2.278596 CTGATGCTGCAATGGCGC 60.279 61.111 6.36 0.00 45.35 6.53
166 167 1.226575 CACTGATGCTGCAATGGCG 60.227 57.895 6.36 0.00 45.35 5.69
167 168 4.806571 CACTGATGCTGCAATGGC 57.193 55.556 6.36 0.00 41.68 4.40
177 178 2.101415 TCGTCCTCCTATTGCACTGATG 59.899 50.000 0.00 0.00 0.00 3.07
178 179 2.101582 GTCGTCCTCCTATTGCACTGAT 59.898 50.000 0.00 0.00 0.00 2.90
179 180 1.476891 GTCGTCCTCCTATTGCACTGA 59.523 52.381 0.00 0.00 0.00 3.41
180 181 1.204704 TGTCGTCCTCCTATTGCACTG 59.795 52.381 0.00 0.00 0.00 3.66
181 182 1.478510 CTGTCGTCCTCCTATTGCACT 59.521 52.381 0.00 0.00 0.00 4.40
182 183 1.476891 TCTGTCGTCCTCCTATTGCAC 59.523 52.381 0.00 0.00 0.00 4.57
183 184 1.751351 CTCTGTCGTCCTCCTATTGCA 59.249 52.381 0.00 0.00 0.00 4.08
184 185 2.025155 TCTCTGTCGTCCTCCTATTGC 58.975 52.381 0.00 0.00 0.00 3.56
185 186 3.283751 ACTCTCTGTCGTCCTCCTATTG 58.716 50.000 0.00 0.00 0.00 1.90
186 187 3.655615 ACTCTCTGTCGTCCTCCTATT 57.344 47.619 0.00 0.00 0.00 1.73
187 188 3.071892 CCTACTCTCTGTCGTCCTCCTAT 59.928 52.174 0.00 0.00 0.00 2.57
188 189 2.435069 CCTACTCTCTGTCGTCCTCCTA 59.565 54.545 0.00 0.00 0.00 2.94
189 190 1.210967 CCTACTCTCTGTCGTCCTCCT 59.789 57.143 0.00 0.00 0.00 3.69
190 191 1.670791 CCTACTCTCTGTCGTCCTCC 58.329 60.000 0.00 0.00 0.00 4.30
191 192 1.018910 GCCTACTCTCTGTCGTCCTC 58.981 60.000 0.00 0.00 0.00 3.71
192 193 0.394625 GGCCTACTCTCTGTCGTCCT 60.395 60.000 0.00 0.00 0.00 3.85
193 194 1.716826 CGGCCTACTCTCTGTCGTCC 61.717 65.000 0.00 0.00 0.00 4.79
194 195 0.743701 TCGGCCTACTCTCTGTCGTC 60.744 60.000 0.00 0.00 0.00 4.20
195 196 0.745128 CTCGGCCTACTCTCTGTCGT 60.745 60.000 0.00 0.00 0.00 4.34
196 197 0.462225 TCTCGGCCTACTCTCTGTCG 60.462 60.000 0.00 0.00 0.00 4.35
197 198 1.606668 CATCTCGGCCTACTCTCTGTC 59.393 57.143 0.00 0.00 0.00 3.51
198 199 1.213182 TCATCTCGGCCTACTCTCTGT 59.787 52.381 0.00 0.00 0.00 3.41
199 200 1.879380 CTCATCTCGGCCTACTCTCTG 59.121 57.143 0.00 0.00 0.00 3.35
200 201 1.493022 ACTCATCTCGGCCTACTCTCT 59.507 52.381 0.00 0.00 0.00 3.10
201 202 1.606668 CACTCATCTCGGCCTACTCTC 59.393 57.143 0.00 0.00 0.00 3.20
202 203 1.213182 TCACTCATCTCGGCCTACTCT 59.787 52.381 0.00 0.00 0.00 3.24
203 204 1.335496 GTCACTCATCTCGGCCTACTC 59.665 57.143 0.00 0.00 0.00 2.59
204 205 1.394618 GTCACTCATCTCGGCCTACT 58.605 55.000 0.00 0.00 0.00 2.57
205 206 0.029567 CGTCACTCATCTCGGCCTAC 59.970 60.000 0.00 0.00 0.00 3.18
206 207 1.725557 GCGTCACTCATCTCGGCCTA 61.726 60.000 0.00 0.00 0.00 3.93
207 208 3.069980 GCGTCACTCATCTCGGCCT 62.070 63.158 0.00 0.00 0.00 5.19
208 209 2.583593 GCGTCACTCATCTCGGCC 60.584 66.667 0.00 0.00 0.00 6.13
209 210 1.875813 CAGCGTCACTCATCTCGGC 60.876 63.158 0.00 0.00 0.00 5.54
210 211 1.226802 CCAGCGTCACTCATCTCGG 60.227 63.158 0.00 0.00 0.00 4.63
211 212 0.171231 TTCCAGCGTCACTCATCTCG 59.829 55.000 0.00 0.00 0.00 4.04
212 213 1.996191 GTTTCCAGCGTCACTCATCTC 59.004 52.381 0.00 0.00 0.00 2.75
213 214 1.670087 CGTTTCCAGCGTCACTCATCT 60.670 52.381 0.00 0.00 0.00 2.90
214 215 0.716108 CGTTTCCAGCGTCACTCATC 59.284 55.000 0.00 0.00 0.00 2.92
215 216 0.317160 TCGTTTCCAGCGTCACTCAT 59.683 50.000 0.00 0.00 0.00 2.90
216 217 0.596600 GTCGTTTCCAGCGTCACTCA 60.597 55.000 0.00 0.00 0.00 3.41
217 218 0.318784 AGTCGTTTCCAGCGTCACTC 60.319 55.000 0.00 0.00 0.00 3.51
218 219 0.318784 GAGTCGTTTCCAGCGTCACT 60.319 55.000 0.00 0.00 0.00 3.41
219 220 0.318784 AGAGTCGTTTCCAGCGTCAC 60.319 55.000 0.00 0.00 0.00 3.67
220 221 1.199327 CTAGAGTCGTTTCCAGCGTCA 59.801 52.381 0.00 0.00 0.00 4.35
221 222 1.199558 ACTAGAGTCGTTTCCAGCGTC 59.800 52.381 0.00 0.00 0.00 5.19
222 223 1.068472 CACTAGAGTCGTTTCCAGCGT 60.068 52.381 0.00 0.00 0.00 5.07
223 224 1.068472 ACACTAGAGTCGTTTCCAGCG 60.068 52.381 0.00 0.00 0.00 5.18
224 225 2.726832 ACACTAGAGTCGTTTCCAGC 57.273 50.000 0.00 0.00 0.00 4.85
225 226 5.064962 CCTACTACACTAGAGTCGTTTCCAG 59.935 48.000 2.95 0.00 0.00 3.86
226 227 4.940046 CCTACTACACTAGAGTCGTTTCCA 59.060 45.833 2.95 0.00 0.00 3.53
227 228 5.064579 GTCCTACTACACTAGAGTCGTTTCC 59.935 48.000 2.95 0.00 0.00 3.13
228 229 5.220378 CGTCCTACTACACTAGAGTCGTTTC 60.220 48.000 2.95 0.00 0.00 2.78
229 230 4.629200 CGTCCTACTACACTAGAGTCGTTT 59.371 45.833 2.95 0.00 0.00 3.60
230 231 4.180057 CGTCCTACTACACTAGAGTCGTT 58.820 47.826 2.95 0.00 0.00 3.85
231 232 3.779759 CGTCCTACTACACTAGAGTCGT 58.220 50.000 0.00 0.00 0.00 4.34
232 233 2.539274 GCGTCCTACTACACTAGAGTCG 59.461 54.545 0.00 0.00 0.00 4.18
233 234 2.539274 CGCGTCCTACTACACTAGAGTC 59.461 54.545 0.00 0.00 0.00 3.36
234 235 2.548875 CGCGTCCTACTACACTAGAGT 58.451 52.381 0.00 0.00 0.00 3.24
235 236 1.865970 CCGCGTCCTACTACACTAGAG 59.134 57.143 4.92 0.00 0.00 2.43
236 237 1.473965 CCCGCGTCCTACTACACTAGA 60.474 57.143 4.92 0.00 0.00 2.43
237 238 0.942962 CCCGCGTCCTACTACACTAG 59.057 60.000 4.92 0.00 0.00 2.57
238 239 0.253044 ACCCGCGTCCTACTACACTA 59.747 55.000 4.92 0.00 0.00 2.74
239 240 0.253044 TACCCGCGTCCTACTACACT 59.747 55.000 4.92 0.00 0.00 3.55
240 241 0.378610 GTACCCGCGTCCTACTACAC 59.621 60.000 4.92 0.00 0.00 2.90
241 242 0.748005 GGTACCCGCGTCCTACTACA 60.748 60.000 4.92 0.00 0.00 2.74
242 243 2.025719 GGTACCCGCGTCCTACTAC 58.974 63.158 4.92 0.00 0.00 2.73
243 244 4.559502 GGTACCCGCGTCCTACTA 57.440 61.111 4.92 0.00 0.00 1.82
333 336 2.986479 CAAAAATCCTTCTTTTCGGCCG 59.014 45.455 22.12 22.12 0.00 6.13
374 379 6.354301 CCCTAATCTGAAGAATCCTTCCCTTT 60.354 42.308 0.00 0.00 46.33 3.11
375 380 5.133491 CCCTAATCTGAAGAATCCTTCCCTT 59.867 44.000 0.00 0.00 46.33 3.95
376 381 4.662650 CCCTAATCTGAAGAATCCTTCCCT 59.337 45.833 0.00 0.00 46.33 4.20
377 382 4.202514 CCCCTAATCTGAAGAATCCTTCCC 60.203 50.000 0.00 0.00 46.33 3.97
378 383 4.660771 TCCCCTAATCTGAAGAATCCTTCC 59.339 45.833 0.00 0.00 46.33 3.46
379 384 5.896073 TCCCCTAATCTGAAGAATCCTTC 57.104 43.478 0.00 0.00 46.89 3.46
380 385 6.855375 AATCCCCTAATCTGAAGAATCCTT 57.145 37.500 0.00 0.00 34.81 3.36
381 386 6.855375 AAATCCCCTAATCTGAAGAATCCT 57.145 37.500 0.00 0.00 0.00 3.24
402 407 0.325602 CGGCCCCCTTGTACAGTAAA 59.674 55.000 0.00 0.00 0.00 2.01
513 525 1.534729 GGAGGCGACAACCAGATTTT 58.465 50.000 0.00 0.00 0.00 1.82
604 617 2.262774 CTCCATCACTCCACCTGCCC 62.263 65.000 0.00 0.00 0.00 5.36
618 631 0.027696 TCCCCCATTCATCCCTCCAT 60.028 55.000 0.00 0.00 0.00 3.41
676 690 4.373116 GAACTGTGGAGGCGCGGA 62.373 66.667 8.83 0.00 0.00 5.54
689 703 3.637273 GGGGACAGGTGGCGAACT 61.637 66.667 0.00 0.00 0.00 3.01
806 821 3.566322 CGGTCACCCAACTTTGAAATACA 59.434 43.478 0.00 0.00 0.00 2.29
851 867 0.896923 AAATACACCCACGGTCGCTA 59.103 50.000 0.00 0.00 31.02 4.26
854 870 3.067742 AGAGATAAATACACCCACGGTCG 59.932 47.826 0.00 0.00 31.02 4.79
890 906 6.262601 TCAACGTGTCAATTTCTTTTTCCTC 58.737 36.000 0.00 0.00 0.00 3.71
892 908 5.051708 GCTCAACGTGTCAATTTCTTTTTCC 60.052 40.000 0.00 0.00 0.00 3.13
893 909 5.330792 CGCTCAACGTGTCAATTTCTTTTTC 60.331 40.000 0.00 0.00 36.87 2.29
894 910 4.499040 CGCTCAACGTGTCAATTTCTTTTT 59.501 37.500 0.00 0.00 36.87 1.94
895 911 4.035017 CGCTCAACGTGTCAATTTCTTTT 58.965 39.130 0.00 0.00 36.87 2.27
896 912 3.617669 CGCTCAACGTGTCAATTTCTTT 58.382 40.909 0.00 0.00 36.87 2.52
897 913 2.602217 GCGCTCAACGTGTCAATTTCTT 60.602 45.455 0.00 0.00 46.11 2.52
898 914 1.069906 GCGCTCAACGTGTCAATTTCT 60.070 47.619 0.00 0.00 46.11 2.52
899 915 1.318251 GCGCTCAACGTGTCAATTTC 58.682 50.000 0.00 0.00 46.11 2.17
903 919 0.027455 CTTTGCGCTCAACGTGTCAA 59.973 50.000 9.73 0.00 46.11 3.18
964 980 2.716244 CGTGGTATCGCTCGCTCT 59.284 61.111 0.00 0.00 0.00 4.09
1264 1280 0.981801 GGGGGAGAAGGGTACAGGAC 60.982 65.000 0.00 0.00 0.00 3.85
1316 1332 4.187694 GAGGAGCAGAGTGTAAGAAATGG 58.812 47.826 0.00 0.00 0.00 3.16
1324 1340 0.394488 CGGAGGAGGAGCAGAGTGTA 60.394 60.000 0.00 0.00 0.00 2.90
1326 1342 1.680651 ACGGAGGAGGAGCAGAGTG 60.681 63.158 0.00 0.00 0.00 3.51
1327 1343 1.680651 CACGGAGGAGGAGCAGAGT 60.681 63.158 0.00 0.00 0.00 3.24
1330 1346 1.079543 CAACACGGAGGAGGAGCAG 60.080 63.158 0.00 0.00 0.00 4.24
1353 1369 3.222855 AGATCTCCCTGCGGCGAG 61.223 66.667 12.98 5.11 0.00 5.03
1389 1405 1.209019 AGAGGAGCAAGCAATCGATGT 59.791 47.619 0.00 0.00 0.00 3.06
1576 1592 1.920835 AAGACCAGCTCCACCCTCC 60.921 63.158 0.00 0.00 0.00 4.30
1601 1617 1.433534 CTCTTTGGAGACTGGAACGC 58.566 55.000 0.00 0.00 41.86 4.84
1627 1643 1.566231 ACCTGAATCCCATCAAGGACC 59.434 52.381 0.00 0.00 39.24 4.46
2022 2038 6.435277 ACTTCATTTTACCTTGCTGATCACAT 59.565 34.615 0.00 0.00 0.00 3.21
2023 2039 5.769662 ACTTCATTTTACCTTGCTGATCACA 59.230 36.000 0.00 0.00 0.00 3.58
2024 2040 6.259550 ACTTCATTTTACCTTGCTGATCAC 57.740 37.500 0.00 0.00 0.00 3.06
2025 2041 6.899393 AACTTCATTTTACCTTGCTGATCA 57.101 33.333 0.00 0.00 0.00 2.92
2026 2042 9.860898 ATTAAACTTCATTTTACCTTGCTGATC 57.139 29.630 0.00 0.00 0.00 2.92
2042 2058 8.023128 GCATGCTTTCAGTTCTATTAAACTTCA 58.977 33.333 11.37 0.00 37.38 3.02
2043 2059 8.023128 TGCATGCTTTCAGTTCTATTAAACTTC 58.977 33.333 20.33 0.00 37.38 3.01
2044 2060 7.885297 TGCATGCTTTCAGTTCTATTAAACTT 58.115 30.769 20.33 0.00 37.38 2.66
2045 2061 7.452880 TGCATGCTTTCAGTTCTATTAAACT 57.547 32.000 20.33 0.00 40.08 2.66
2046 2062 8.693542 ATTGCATGCTTTCAGTTCTATTAAAC 57.306 30.769 20.33 0.00 0.00 2.01
2047 2063 9.142515 CAATTGCATGCTTTCAGTTCTATTAAA 57.857 29.630 20.33 0.00 0.00 1.52
2048 2064 8.306038 ACAATTGCATGCTTTCAGTTCTATTAA 58.694 29.630 20.33 0.00 0.00 1.40
2049 2065 7.829725 ACAATTGCATGCTTTCAGTTCTATTA 58.170 30.769 20.33 0.00 0.00 0.98
2050 2066 6.694447 ACAATTGCATGCTTTCAGTTCTATT 58.306 32.000 20.33 0.80 0.00 1.73
2051 2067 6.276832 ACAATTGCATGCTTTCAGTTCTAT 57.723 33.333 20.33 0.00 0.00 1.98
2052 2068 5.710513 ACAATTGCATGCTTTCAGTTCTA 57.289 34.783 20.33 0.00 0.00 2.10
2053 2069 4.595762 ACAATTGCATGCTTTCAGTTCT 57.404 36.364 20.33 0.00 0.00 3.01
2054 2070 5.346822 CCTAACAATTGCATGCTTTCAGTTC 59.653 40.000 20.33 0.00 0.00 3.01
2055 2071 5.232463 CCTAACAATTGCATGCTTTCAGTT 58.768 37.500 20.33 17.65 0.00 3.16
2056 2072 4.813027 CCTAACAATTGCATGCTTTCAGT 58.187 39.130 20.33 8.30 0.00 3.41
2057 2073 3.615496 GCCTAACAATTGCATGCTTTCAG 59.385 43.478 20.33 7.65 0.00 3.02
2058 2074 3.258872 AGCCTAACAATTGCATGCTTTCA 59.741 39.130 20.33 0.25 0.00 2.69
2059 2075 3.853475 AGCCTAACAATTGCATGCTTTC 58.147 40.909 20.33 0.29 0.00 2.62
2060 2076 3.967332 AGCCTAACAATTGCATGCTTT 57.033 38.095 20.33 9.89 0.00 3.51
2061 2077 3.368739 GGAAGCCTAACAATTGCATGCTT 60.369 43.478 20.33 18.98 40.02 3.91
2062 2078 2.167075 GGAAGCCTAACAATTGCATGCT 59.833 45.455 20.33 5.97 0.00 3.79
2063 2079 2.094078 TGGAAGCCTAACAATTGCATGC 60.094 45.455 11.82 11.82 0.00 4.06
2064 2080 3.444742 TCTGGAAGCCTAACAATTGCATG 59.555 43.478 5.05 0.00 0.00 4.06
2065 2081 3.445096 GTCTGGAAGCCTAACAATTGCAT 59.555 43.478 5.05 0.00 0.00 3.96
2066 2082 2.819608 GTCTGGAAGCCTAACAATTGCA 59.180 45.455 5.05 0.00 0.00 4.08
2067 2083 2.819608 TGTCTGGAAGCCTAACAATTGC 59.180 45.455 5.05 0.00 0.00 3.56
2068 2084 5.649782 ATTGTCTGGAAGCCTAACAATTG 57.350 39.130 3.24 3.24 36.62 2.32
2069 2085 5.774690 TCAATTGTCTGGAAGCCTAACAATT 59.225 36.000 16.71 16.71 43.21 2.32
2070 2086 5.324409 TCAATTGTCTGGAAGCCTAACAAT 58.676 37.500 5.13 9.63 39.29 2.71
2071 2087 4.724399 TCAATTGTCTGGAAGCCTAACAA 58.276 39.130 5.13 0.00 34.84 2.83
2072 2088 4.041567 TCTCAATTGTCTGGAAGCCTAACA 59.958 41.667 5.13 0.00 0.00 2.41
2073 2089 4.579869 TCTCAATTGTCTGGAAGCCTAAC 58.420 43.478 5.13 0.00 0.00 2.34
2074 2090 4.323792 CCTCTCAATTGTCTGGAAGCCTAA 60.324 45.833 5.13 0.00 0.00 2.69
2075 2091 3.198635 CCTCTCAATTGTCTGGAAGCCTA 59.801 47.826 5.13 0.00 0.00 3.93
2076 2092 2.026449 CCTCTCAATTGTCTGGAAGCCT 60.026 50.000 5.13 0.00 0.00 4.58
2077 2093 2.363683 CCTCTCAATTGTCTGGAAGCC 58.636 52.381 5.13 0.00 0.00 4.35
2078 2094 2.290577 ACCCTCTCAATTGTCTGGAAGC 60.291 50.000 5.13 0.00 0.00 3.86
2079 2095 3.008375 TCACCCTCTCAATTGTCTGGAAG 59.992 47.826 5.13 0.00 0.00 3.46
2080 2096 2.978978 TCACCCTCTCAATTGTCTGGAA 59.021 45.455 5.13 0.00 0.00 3.53
2081 2097 2.619931 TCACCCTCTCAATTGTCTGGA 58.380 47.619 5.13 0.00 0.00 3.86
2082 2098 3.641434 ATCACCCTCTCAATTGTCTGG 57.359 47.619 5.13 5.94 0.00 3.86
2083 2099 5.350504 ACTATCACCCTCTCAATTGTCTG 57.649 43.478 5.13 0.00 0.00 3.51
2084 2100 8.783660 TTATACTATCACCCTCTCAATTGTCT 57.216 34.615 5.13 0.00 0.00 3.41
2109 2125 9.601217 CAAGCTGACCTTATTAACACTAAGTAT 57.399 33.333 0.00 0.00 31.00 2.12
2110 2126 8.591072 ACAAGCTGACCTTATTAACACTAAGTA 58.409 33.333 0.00 0.00 31.00 2.24
2111 2127 7.387948 CACAAGCTGACCTTATTAACACTAAGT 59.612 37.037 0.00 0.00 31.00 2.24
2112 2128 7.624344 GCACAAGCTGACCTTATTAACACTAAG 60.624 40.741 0.00 0.00 37.91 2.18
2113 2129 6.148811 GCACAAGCTGACCTTATTAACACTAA 59.851 38.462 0.00 0.00 37.91 2.24
2114 2130 5.642063 GCACAAGCTGACCTTATTAACACTA 59.358 40.000 0.00 0.00 37.91 2.74
2115 2131 4.455877 GCACAAGCTGACCTTATTAACACT 59.544 41.667 0.00 0.00 37.91 3.55
2116 2132 4.669197 CGCACAAGCTGACCTTATTAACAC 60.669 45.833 0.00 0.00 39.10 3.32
2117 2133 3.435327 CGCACAAGCTGACCTTATTAACA 59.565 43.478 0.00 0.00 39.10 2.41
2121 2137 2.185004 ACGCACAAGCTGACCTTATT 57.815 45.000 0.00 0.00 39.10 1.40
2155 2171 4.917906 ACAATAGCTGAGGGAGAAAACT 57.082 40.909 0.00 0.00 0.00 2.66
2156 2172 5.488341 TGTACAATAGCTGAGGGAGAAAAC 58.512 41.667 0.00 0.00 0.00 2.43
2165 2181 5.007430 CCAGAAAGCATGTACAATAGCTGAG 59.993 44.000 17.90 10.20 37.41 3.35
2196 2212 7.280428 ACAGAAAAATGTGTCATTTGAATTGCA 59.720 29.630 8.20 0.00 30.46 4.08
2279 2300 9.638239 TTTTACCTTGCTGATCACATAAATTTC 57.362 29.630 0.00 0.00 0.00 2.17
2283 2304 8.347004 TCATTTTACCTTGCTGATCACATAAA 57.653 30.769 0.00 0.00 0.00 1.40
2312 2333 8.306038 ACAATTGCATGCTTTCAGTTCTATTAA 58.694 29.630 20.33 0.00 0.00 1.40
2343 2525 3.008375 TCACCCTCTCAATTGTCTGGAAG 59.992 47.826 5.13 0.00 0.00 3.46
2386 2571 9.778741 TGAAGCATCGACTTAAAATATCCTTAT 57.221 29.630 0.00 0.00 0.00 1.73
2420 2606 6.435277 CCAGTACAACCTACTCAACCTACTTA 59.565 42.308 0.00 0.00 0.00 2.24
2472 2660 7.378966 TCCCTGAATCGAAGATACATAATCAC 58.621 38.462 0.00 0.00 45.12 3.06
2487 2675 2.733552 CAGATACGCAATCCCTGAATCG 59.266 50.000 0.00 0.00 34.90 3.34
2544 2732 6.071463 CAGGTTAGAAAGAAATCAACGTTCG 58.929 40.000 0.00 0.00 32.75 3.95
2554 2742 8.350852 TGGTTGTTTTACAGGTTAGAAAGAAA 57.649 30.769 0.00 0.00 0.00 2.52
2566 2754 4.158764 TCCTGTTGGTTGGTTGTTTTACAG 59.841 41.667 0.00 0.00 33.39 2.74
2706 2894 7.933577 TCTTCATGCCATATCTAGTTACCAAAG 59.066 37.037 0.00 0.00 0.00 2.77
3088 3277 5.991328 AACTAACATCTTGTGTCACACTG 57.009 39.130 9.90 6.50 41.14 3.66
3130 3319 9.196552 CTGTTCTAGCGAAATAATGTCATATCA 57.803 33.333 0.00 0.00 0.00 2.15
3147 3336 6.743575 ATACATCAAACAACCTGTTCTAGC 57.256 37.500 0.00 0.00 40.14 3.42
3174 3365 8.682710 GCAATAGGGTATGTTTCTTGTTCATTA 58.317 33.333 0.00 0.00 0.00 1.90
3197 3388 3.555547 CGAGACAACCATCGATATTGCAA 59.444 43.478 17.33 0.00 41.40 4.08
3203 3394 2.371306 TCCACGAGACAACCATCGATA 58.629 47.619 0.00 0.00 41.40 2.92
3204 3395 1.182667 TCCACGAGACAACCATCGAT 58.817 50.000 1.13 0.00 41.40 3.59
3219 3410 4.507710 TGCATGACAGTAGAAAGATCCAC 58.492 43.478 0.00 0.00 0.00 4.02
3277 3468 2.835764 ACCATTGATCAAGCCTTGCAAT 59.164 40.909 14.54 2.18 0.00 3.56
3301 3492 1.595311 TATGGGCTCATCCTTGTGGT 58.405 50.000 0.00 0.00 34.96 4.16
3333 3529 7.972832 AATAGTTCGAACCATTTTGTCAGTA 57.027 32.000 24.22 6.33 0.00 2.74
3350 3546 7.164826 CGCATGCAAATAGAAGTGAAATAGTTC 59.835 37.037 19.57 0.00 38.73 3.01
3388 3585 3.441572 GCACTGCCAGAATTGTACAGAAT 59.558 43.478 0.00 0.00 33.27 2.40
3389 3586 2.813754 GCACTGCCAGAATTGTACAGAA 59.186 45.455 0.00 0.00 33.27 3.02
3395 3592 4.097437 CAGAATATGCACTGCCAGAATTGT 59.903 41.667 0.00 0.00 0.00 2.71
3397 3594 3.635373 CCAGAATATGCACTGCCAGAATT 59.365 43.478 0.00 0.00 33.40 2.17
3405 3602 3.118482 AGTGACCTCCAGAATATGCACTG 60.118 47.826 0.00 0.00 34.42 3.66
3421 3618 5.357314 TGACAGCTATAGTGAGTTAGTGACC 59.643 44.000 0.84 0.00 0.00 4.02
3427 3624 5.451937 GCCACATGACAGCTATAGTGAGTTA 60.452 44.000 0.00 0.00 0.00 2.24
3428 3625 4.681781 GCCACATGACAGCTATAGTGAGTT 60.682 45.833 0.00 0.00 0.00 3.01
3429 3626 3.181471 GCCACATGACAGCTATAGTGAGT 60.181 47.826 0.00 0.00 0.00 3.41
3430 3627 3.181472 TGCCACATGACAGCTATAGTGAG 60.181 47.826 0.00 0.00 0.00 3.51
3431 3628 2.765699 TGCCACATGACAGCTATAGTGA 59.234 45.455 0.00 0.00 0.00 3.41
3432 3629 3.183793 TGCCACATGACAGCTATAGTG 57.816 47.619 0.00 1.57 0.00 2.74
3433 3630 3.389002 TCATGCCACATGACAGCTATAGT 59.611 43.478 6.17 0.00 0.00 2.12
3434 3631 3.744942 GTCATGCCACATGACAGCTATAG 59.255 47.826 27.43 0.00 45.61 1.31
3435 3632 3.732212 GTCATGCCACATGACAGCTATA 58.268 45.455 27.43 0.00 45.61 1.31
3438 3635 2.864114 GTCATGCCACATGACAGCT 58.136 52.632 27.43 0.00 45.61 4.24
3445 3642 0.401356 TGTCTGGTGTCATGCCACAT 59.599 50.000 9.39 0.00 37.06 3.21
3451 3648 0.877071 GGCTGTTGTCTGGTGTCATG 59.123 55.000 0.00 0.00 0.00 3.07
3452 3649 0.473755 TGGCTGTTGTCTGGTGTCAT 59.526 50.000 0.00 0.00 0.00 3.06
3455 3652 1.526917 GCTGGCTGTTGTCTGGTGT 60.527 57.895 0.00 0.00 0.00 4.16
3459 3656 3.664495 CCTGCTGGCTGTTGTCTG 58.336 61.111 0.00 0.00 0.00 3.51
3521 3739 8.748179 AAATCATATCTTCCTAATCCTCCTCA 57.252 34.615 0.00 0.00 0.00 3.86
3534 3752 9.737427 TCAAGTTCTCGACTAAATCATATCTTC 57.263 33.333 0.00 0.00 37.72 2.87
3535 3753 9.743057 CTCAAGTTCTCGACTAAATCATATCTT 57.257 33.333 0.00 0.00 37.72 2.40
3718 3975 4.381185 GCATTTTCATGAGTCCAAGCATCA 60.381 41.667 0.00 0.00 31.07 3.07
3780 4037 8.832521 CAAAGATACCGCAATAGTTTATGGTTA 58.167 33.333 0.00 0.00 0.00 2.85
3813 4070 5.007682 TGTTATACTCAAAGCTGGGGTTTC 58.992 41.667 0.00 0.00 30.52 2.78
3817 4074 2.945668 GCTGTTATACTCAAAGCTGGGG 59.054 50.000 0.00 0.00 0.00 4.96
3856 4113 2.830651 ACCCCCAGTGTTAAACAACA 57.169 45.000 0.00 0.00 0.00 3.33
3875 4132 6.137415 CCAAATTTAAAGCGAACGTTCTGTA 58.863 36.000 24.80 5.11 0.00 2.74
3877 4134 4.143618 GCCAAATTTAAAGCGAACGTTCTG 60.144 41.667 24.80 18.57 0.00 3.02
3887 4144 7.384932 TGAAAAGCTTAGAGCCAAATTTAAAGC 59.615 33.333 0.00 0.00 43.77 3.51
3953 4210 6.483687 CAAGTGTAAGACGTTATTTATGCCC 58.516 40.000 0.00 0.00 0.00 5.36
3965 4222 2.479837 TCTTGTGGCAAGTGTAAGACG 58.520 47.619 8.48 0.00 0.00 4.18
4006 4263 0.251354 GCCTTCTGATCTGGCTGACA 59.749 55.000 10.72 0.00 43.05 3.58
4007 4264 0.463474 GGCCTTCTGATCTGGCTGAC 60.463 60.000 15.29 0.00 45.45 3.51
4091 4349 4.323553 ACTACTTCAGTTCCACAGACAC 57.676 45.455 0.00 0.00 31.59 3.67
4211 4469 8.210946 CAGGTACCATAAATCAATAGTGAAGGA 58.789 37.037 15.94 0.00 37.30 3.36
4253 4511 4.924625 TGCTGGGCCTTAGTTAACATTTA 58.075 39.130 8.61 0.00 0.00 1.40
4257 4515 2.107552 AGTTGCTGGGCCTTAGTTAACA 59.892 45.455 8.61 4.16 0.00 2.41
4258 4516 2.488153 CAGTTGCTGGGCCTTAGTTAAC 59.512 50.000 4.53 11.15 0.00 2.01
4261 4519 0.478507 ACAGTTGCTGGGCCTTAGTT 59.521 50.000 4.53 0.00 35.51 2.24
4262 4520 0.478507 AACAGTTGCTGGGCCTTAGT 59.521 50.000 4.53 0.00 35.51 2.24
4263 4521 0.883833 CAACAGTTGCTGGGCCTTAG 59.116 55.000 4.53 2.51 35.51 2.18
4513 4787 0.792640 CCATGTCTGTTCAGTCGTGC 59.207 55.000 11.64 0.00 0.00 5.34
4516 4790 2.154854 ACACCATGTCTGTTCAGTCG 57.845 50.000 0.00 0.00 0.00 4.18
4561 4835 2.855728 GAAGTGCCGCCAAAGCATCG 62.856 60.000 0.00 0.00 43.29 3.84
4563 4837 1.462731 TTGAAGTGCCGCCAAAGCAT 61.463 50.000 0.00 0.00 43.29 3.79
4574 4848 2.481276 GGTCCAAAACAGGTTGAAGTGC 60.481 50.000 0.00 0.00 0.00 4.40
4648 4922 8.454106 CAGCATGCTCTTGTAAGTTAATAAAGT 58.546 33.333 19.68 0.00 0.00 2.66
4769 5043 3.950397 AGTGTTGTTCTGTCAAAGACCA 58.050 40.909 0.00 0.00 33.46 4.02
5062 5336 9.135843 CTTATCAGTTATAGACGACAAACAACA 57.864 33.333 0.00 0.00 0.00 3.33
5107 5387 4.472108 ACTTATTTTGGGACGGATGGAGTA 59.528 41.667 0.00 0.00 0.00 2.59
5108 5388 3.265995 ACTTATTTTGGGACGGATGGAGT 59.734 43.478 0.00 0.00 0.00 3.85
5109 5389 3.627577 CACTTATTTTGGGACGGATGGAG 59.372 47.826 0.00 0.00 0.00 3.86
5110 5390 3.009695 ACACTTATTTTGGGACGGATGGA 59.990 43.478 0.00 0.00 0.00 3.41
5111 5391 3.352648 ACACTTATTTTGGGACGGATGG 58.647 45.455 0.00 0.00 0.00 3.51
5112 5392 4.261801 AGACACTTATTTTGGGACGGATG 58.738 43.478 0.00 0.00 0.00 3.51
5113 5393 4.019681 TGAGACACTTATTTTGGGACGGAT 60.020 41.667 0.00 0.00 0.00 4.18
5114 5394 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
5115 5395 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
5116 5396 4.378459 GCTTGAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
5117 5397 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
5118 5398 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
5119 5399 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
5120 5400 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
5121 5401 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
5122 5402 9.555727 TTGTACTAAGCTTGAGACACTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
5123 5403 8.989980 GTTGTACTAAGCTTGAGACACTTATTT 58.010 33.333 9.86 0.00 0.00 1.40
5124 5404 8.368668 AGTTGTACTAAGCTTGAGACACTTATT 58.631 33.333 9.86 0.00 0.00 1.40
5125 5405 7.897864 AGTTGTACTAAGCTTGAGACACTTAT 58.102 34.615 9.86 0.00 0.00 1.73
5126 5406 7.286215 AGTTGTACTAAGCTTGAGACACTTA 57.714 36.000 9.86 0.00 0.00 2.24
5127 5407 6.163135 AGTTGTACTAAGCTTGAGACACTT 57.837 37.500 9.86 0.00 0.00 3.16
5128 5408 5.793030 AGTTGTACTAAGCTTGAGACACT 57.207 39.130 9.86 7.29 0.00 3.55
5129 5409 6.258068 ACAAAGTTGTACTAAGCTTGAGACAC 59.742 38.462 9.86 7.18 40.16 3.67
5130 5410 6.346096 ACAAAGTTGTACTAAGCTTGAGACA 58.654 36.000 9.86 7.12 40.16 3.41
5131 5411 6.846325 ACAAAGTTGTACTAAGCTTGAGAC 57.154 37.500 9.86 4.39 40.16 3.36
5165 5445 9.673454 CCCAAAATAAGTGTCTTAACTTTGTAC 57.327 33.333 16.72 0.00 40.77 2.90
5166 5446 9.629878 TCCCAAAATAAGTGTCTTAACTTTGTA 57.370 29.630 16.72 8.94 40.77 2.41
5167 5447 8.410912 GTCCCAAAATAAGTGTCTTAACTTTGT 58.589 33.333 16.72 0.00 40.77 2.83
5168 5448 7.589954 CGTCCCAAAATAAGTGTCTTAACTTTG 59.410 37.037 14.00 14.00 40.77 2.77
5169 5449 7.255346 CCGTCCCAAAATAAGTGTCTTAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
5170 5450 6.206048 CCGTCCCAAAATAAGTGTCTTAACTT 59.794 38.462 0.00 0.00 42.89 2.66
5171 5451 5.704053 CCGTCCCAAAATAAGTGTCTTAACT 59.296 40.000 0.00 0.00 0.00 2.24
5172 5452 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
5173 5453 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
5174 5454 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
5175 5455 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
5176 5456 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
5177 5457 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
5178 5458 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
5179 5459 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5180 5460 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5181 5461 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5182 5462 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5183 5463 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5184 5464 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5185 5465 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
5186 5466 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
5187 5467 1.557832 CAAATACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
5188 5468 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
5189 5469 1.201424 ACAAATACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
5190 5470 3.345508 AAACAAATACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
5191 5471 4.272748 GCATAAACAAATACTCCCTCCGTC 59.727 45.833 0.00 0.00 0.00 4.79
5192 5472 4.080526 AGCATAAACAAATACTCCCTCCGT 60.081 41.667 0.00 0.00 0.00 4.69
5193 5473 4.273480 CAGCATAAACAAATACTCCCTCCG 59.727 45.833 0.00 0.00 0.00 4.63
5194 5474 4.580580 CCAGCATAAACAAATACTCCCTCC 59.419 45.833 0.00 0.00 0.00 4.30
5195 5475 5.193679 ACCAGCATAAACAAATACTCCCTC 58.806 41.667 0.00 0.00 0.00 4.30
5196 5476 5.193099 ACCAGCATAAACAAATACTCCCT 57.807 39.130 0.00 0.00 0.00 4.20
5197 5477 8.685838 TTATACCAGCATAAACAAATACTCCC 57.314 34.615 0.00 0.00 0.00 4.30
5219 5499 8.671921 CATTCAGTGTAAGATGAGCAGTTTTAT 58.328 33.333 0.00 0.00 0.00 1.40
5271 5551 7.148340 CCAAAGTTTTAAGACAAATTTGTGGCA 60.148 33.333 27.85 9.57 42.43 4.92
5453 5782 4.213270 TGCATCTTTACTTGCAGTACACAC 59.787 41.667 0.00 0.00 43.54 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.