Multiple sequence alignment - TraesCS4B01G027500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G027500 chr4B 100.000 4010 0 0 1 4010 20723395 20727404 0.000000e+00 7406.0
1 TraesCS4B01G027500 chr4B 85.973 442 45 10 972 1404 20732858 20733291 1.310000e-124 457.0
2 TraesCS4B01G027500 chr4B 83.588 262 27 10 2766 3016 20734050 20734306 8.670000e-57 231.0
3 TraesCS4B01G027500 chr4B 80.782 307 44 9 1960 2255 20733597 20733899 4.030000e-55 226.0
4 TraesCS4B01G027500 chr1B 92.938 793 46 4 2304 3095 35359228 35360011 0.000000e+00 1146.0
5 TraesCS4B01G027500 chr1B 93.322 569 31 1 2554 3122 35681748 35681187 0.000000e+00 833.0
6 TraesCS4B01G027500 chr1B 83.001 953 70 42 1234 2153 35682863 35681970 0.000000e+00 778.0
7 TraesCS4B01G027500 chr1B 93.277 476 24 2 2621 3095 35253964 35254432 0.000000e+00 695.0
8 TraesCS4B01G027500 chr1B 94.203 414 24 0 2304 2717 35178967 35179380 2.030000e-177 632.0
9 TraesCS4B01G027500 chr1B 84.906 583 60 14 186 759 35688517 35687954 7.520000e-157 564.0
10 TraesCS4B01G027500 chr1B 88.889 414 38 4 343 755 35134290 35134696 1.660000e-138 503.0
11 TraesCS4B01G027500 chr1B 84.026 457 43 13 3294 3733 35360604 35361047 2.880000e-111 412.0
12 TraesCS4B01G027500 chr1B 90.625 288 22 2 1866 2153 35145709 35145991 1.050000e-100 377.0
13 TraesCS4B01G027500 chr1B 81.628 479 32 23 1038 1511 35134975 35135402 2.970000e-91 346.0
14 TraesCS4B01G027500 chr1B 88.971 272 20 4 3735 4005 35671767 35671505 1.070000e-85 327.0
15 TraesCS4B01G027500 chr1B 88.760 258 18 5 3294 3551 35677581 35677335 5.030000e-79 305.0
16 TraesCS4B01G027500 chr1B 87.209 258 19 13 1249 1504 433455250 433455005 8.480000e-72 281.0
17 TraesCS4B01G027500 chr1B 85.199 277 13 9 3735 4010 35361097 35361346 3.980000e-65 259.0
18 TraesCS4B01G027500 chr1B 92.647 136 10 0 3294 3429 35214742 35214877 3.160000e-46 196.0
19 TraesCS4B01G027500 chr1B 89.809 157 8 2 2152 2301 35146048 35146203 1.140000e-45 195.0
20 TraesCS4B01G027500 chr1B 89.024 164 8 2 2152 2308 35681914 35681754 1.140000e-45 195.0
21 TraesCS4B01G027500 chr1B 89.706 136 10 1 3294 3429 35273967 35274098 1.920000e-38 171.0
22 TraesCS4B01G027500 chr1B 88.119 101 3 4 1046 1146 35687544 35687453 1.180000e-20 111.0
23 TraesCS4B01G027500 chr1B 92.000 75 6 0 3199 3273 35214679 35214753 5.480000e-19 106.0
24 TraesCS4B01G027500 chr1B 91.026 78 7 0 3199 3276 35677644 35677567 5.480000e-19 106.0
25 TraesCS4B01G027500 chr1B 88.608 79 9 0 3199 3277 35360541 35360619 3.300000e-16 97.1
26 TraesCS4B01G027500 chr1B 100.000 29 0 0 2676 2704 35179455 35179483 2.000000e-03 54.7
27 TraesCS4B01G027500 chr4D 93.617 658 21 12 791 1447 10976327 10976964 0.000000e+00 963.0
28 TraesCS4B01G027500 chr4D 92.381 420 24 4 343 760 10975849 10976262 3.450000e-165 592.0
29 TraesCS4B01G027500 chr4D 89.357 451 28 4 2636 3074 10978496 10978938 2.110000e-152 549.0
30 TraesCS4B01G027500 chr4D 87.603 242 25 4 1864 2102 10977575 10977814 3.950000e-70 276.0
31 TraesCS4B01G027500 chr4D 84.429 289 26 12 1 276 10974554 10974836 2.380000e-67 267.0
32 TraesCS4B01G027500 chr4D 81.657 338 36 16 1446 1779 10977087 10977402 1.430000e-64 257.0
33 TraesCS4B01G027500 chr4D 96.774 62 2 0 2150 2211 10978439 10978500 1.970000e-18 104.0
34 TraesCS4B01G027500 chr4D 96.721 61 2 0 2093 2153 10978332 10978392 7.090000e-18 102.0
35 TraesCS4B01G027500 chr1D 93.978 465 21 1 2634 3098 21414741 21414284 0.000000e+00 697.0
36 TraesCS4B01G027500 chr1D 83.518 722 58 34 1038 1751 21451199 21450531 5.690000e-173 617.0
37 TraesCS4B01G027500 chr1D 84.014 588 62 17 186 759 21452046 21451477 1.640000e-148 536.0
38 TraesCS4B01G027500 chr1D 92.419 277 17 2 3735 4010 21413125 21412852 3.760000e-105 392.0
39 TraesCS4B01G027500 chr1D 81.687 415 47 16 3339 3735 21413738 21413335 6.470000e-83 318.0
40 TraesCS4B01G027500 chr1D 90.058 171 15 2 790 959 21451383 21451214 1.880000e-53 220.0
41 TraesCS4B01G027500 chr1D 93.590 78 5 0 3199 3276 21413825 21413748 2.530000e-22 117.0
42 TraesCS4B01G027500 chr1D 100.000 31 0 0 3294 3324 21413762 21413732 1.560000e-04 58.4
43 TraesCS4B01G027500 chr1A 89.808 520 35 7 2688 3202 22998847 22998341 0.000000e+00 651.0
44 TraesCS4B01G027500 chr1A 84.655 580 68 11 186 757 23002326 23001760 3.500000e-155 558.0
45 TraesCS4B01G027500 chr1A 80.904 686 56 39 1356 2011 22999923 22999283 4.690000e-129 472.0
46 TraesCS4B01G027500 chr1A 84.775 289 27 10 3294 3577 22997844 22997568 1.420000e-69 274.0
47 TraesCS4B01G027500 chr1A 91.026 78 7 0 3199 3276 22997907 22997830 5.480000e-19 106.0
48 TraesCS4B01G027500 chr4A 89.234 483 20 13 1026 1505 591854885 591855338 3.480000e-160 575.0
49 TraesCS4B01G027500 chr4A 86.041 394 21 14 2818 3202 591856707 591857075 3.760000e-105 392.0
50 TraesCS4B01G027500 chr4A 81.210 463 39 16 3294 3735 591860791 591861226 2.990000e-86 329.0
51 TraesCS4B01G027500 chr4A 87.956 274 16 8 1507 1779 591855431 591855688 1.400000e-79 307.0
52 TraesCS4B01G027500 chr4A 85.859 297 30 5 1865 2153 591855864 591856156 5.030000e-79 305.0
53 TraesCS4B01G027500 chr4A 91.827 208 10 2 2150 2350 591856207 591856414 2.360000e-72 283.0
54 TraesCS4B01G027500 chr4A 92.574 202 3 7 972 1173 591864021 591864210 3.050000e-71 279.0
55 TraesCS4B01G027500 chr4A 79.512 410 49 21 2738 3122 591866075 591866474 3.980000e-65 259.0
56 TraesCS4B01G027500 chr4A 94.631 149 8 0 2431 2579 591856415 591856563 8.670000e-57 231.0
57 TraesCS4B01G027500 chr4A 91.566 166 11 3 3844 4007 591861416 591861580 4.030000e-55 226.0
58 TraesCS4B01G027500 chr4A 80.000 310 48 8 1954 2255 591865687 591865990 2.430000e-52 217.0
59 TraesCS4B01G027500 chr4A 94.245 139 7 1 2625 2762 591856572 591856710 1.130000e-50 211.0
60 TraesCS4B01G027500 chr4A 95.833 48 2 0 3226 3273 591860755 591860802 1.190000e-10 78.7
61 TraesCS4B01G027500 chr6B 84.039 307 27 15 1201 1504 122512730 122512443 3.950000e-70 276.0
62 TraesCS4B01G027500 chr5B 85.271 258 24 13 1249 1504 645875409 645875164 1.850000e-63 254.0
63 TraesCS4B01G027500 chr5A 96.591 88 2 1 1 88 622200645 622200559 1.160000e-30 145.0
64 TraesCS4B01G027500 chr5A 92.045 88 7 0 567 654 622199172 622199085 1.510000e-24 124.0
65 TraesCS4B01G027500 chr2D 87.156 109 8 2 658 760 638240723 638240831 7.040000e-23 119.0
66 TraesCS4B01G027500 chr2D 86.239 109 8 3 658 760 638253920 638254027 1.180000e-20 111.0
67 TraesCS4B01G027500 chr2D 84.545 110 11 2 657 760 591142024 591141915 1.970000e-18 104.0
68 TraesCS4B01G027500 chr3B 83.929 112 13 4 654 760 513938978 513939089 7.090000e-18 102.0
69 TraesCS4B01G027500 chr7A 85.149 101 9 4 660 755 12129250 12129151 9.170000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G027500 chr4B 20723395 20727404 4009 False 7406.000000 7406 100.000000 1 4010 1 chr4B.!!$F1 4009
1 TraesCS4B01G027500 chr4B 20732858 20734306 1448 False 304.666667 457 83.447667 972 3016 3 chr4B.!!$F2 2044
2 TraesCS4B01G027500 chr1B 35359228 35361346 2118 False 478.525000 1146 87.692750 2304 4010 4 chr1B.!!$F7 1706
3 TraesCS4B01G027500 chr1B 35677335 35682863 5528 True 443.400000 833 89.026600 1234 3551 5 chr1B.!!$R3 2317
4 TraesCS4B01G027500 chr1B 35134290 35135402 1112 False 424.500000 503 85.258500 343 1511 2 chr1B.!!$F3 1168
5 TraesCS4B01G027500 chr1B 35178967 35179483 516 False 343.350000 632 97.101500 2304 2717 2 chr1B.!!$F5 413
6 TraesCS4B01G027500 chr1B 35687453 35688517 1064 True 337.500000 564 86.512500 186 1146 2 chr1B.!!$R4 960
7 TraesCS4B01G027500 chr4D 10974554 10978938 4384 False 388.750000 963 90.317375 1 3074 8 chr4D.!!$F1 3073
8 TraesCS4B01G027500 chr1D 21450531 21452046 1515 True 457.666667 617 85.863333 186 1751 3 chr1D.!!$R2 1565
9 TraesCS4B01G027500 chr1D 21412852 21414741 1889 True 316.480000 697 92.334800 2634 4010 5 chr1D.!!$R1 1376
10 TraesCS4B01G027500 chr1A 22997568 23002326 4758 True 412.200000 651 86.233600 186 3577 5 chr1A.!!$R1 3391
11 TraesCS4B01G027500 chr4A 591854885 591866474 11589 False 284.053846 575 88.499077 972 4007 13 chr4A.!!$F1 3035

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.035630 AAGACTGTCATCCCAGCAGC 60.036 55.0 10.88 0.0 35.83 5.25 F
977 2077 0.039708 GCAGCAGCAAAGACAGGAAC 60.040 55.0 0.00 0.0 41.58 3.62 F
1494 13968 0.460722 TGCTTGTGCTGCAACATTGT 59.539 45.0 2.77 0.0 40.48 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 13947 0.856641 CAATGTTGCAGCACAAGCAC 59.143 50.0 5.0 0.0 45.49 4.40 R
2123 15567 0.034059 AGCACCAACAGAGAACCTCG 59.966 55.0 0.0 0.0 35.36 4.63 R
3052 16603 0.242825 CAGTGGCAGCAATGTCAAGG 59.757 55.0 0.0 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.132824 TCTGTCAGAAAGCAAGACTGTCA 59.867 43.478 10.88 0.00 34.71 3.58
68 69 4.063689 CTGTCAGAAAGCAAGACTGTCAT 58.936 43.478 10.88 0.00 34.71 3.06
69 70 4.060900 TGTCAGAAAGCAAGACTGTCATC 58.939 43.478 10.88 0.00 34.71 2.92
70 71 3.434984 GTCAGAAAGCAAGACTGTCATCC 59.565 47.826 10.88 0.00 34.71 3.51
71 72 2.746362 CAGAAAGCAAGACTGTCATCCC 59.254 50.000 10.88 0.00 34.71 3.85
72 73 2.373169 AGAAAGCAAGACTGTCATCCCA 59.627 45.455 10.88 0.00 34.71 4.37
73 74 2.486472 AAGCAAGACTGTCATCCCAG 57.514 50.000 10.88 0.00 38.45 4.45
77 78 0.035630 AAGACTGTCATCCCAGCAGC 60.036 55.000 10.88 0.00 35.83 5.25
78 79 0.908656 AGACTGTCATCCCAGCAGCT 60.909 55.000 10.88 0.00 35.83 4.24
79 80 0.461693 GACTGTCATCCCAGCAGCTC 60.462 60.000 2.24 0.00 35.83 4.09
80 81 0.908656 ACTGTCATCCCAGCAGCTCT 60.909 55.000 0.00 0.00 35.83 4.09
81 82 1.117994 CTGTCATCCCAGCAGCTCTA 58.882 55.000 0.00 0.00 0.00 2.43
82 83 1.068895 CTGTCATCCCAGCAGCTCTAG 59.931 57.143 0.00 0.00 0.00 2.43
83 84 1.342374 TGTCATCCCAGCAGCTCTAGA 60.342 52.381 0.00 0.00 0.00 2.43
84 85 1.340889 GTCATCCCAGCAGCTCTAGAG 59.659 57.143 15.85 15.85 0.00 2.43
85 86 1.216427 TCATCCCAGCAGCTCTAGAGA 59.784 52.381 24.24 0.00 0.00 3.10
86 87 2.037901 CATCCCAGCAGCTCTAGAGAA 58.962 52.381 24.24 0.00 0.00 2.87
87 88 1.774110 TCCCAGCAGCTCTAGAGAAG 58.226 55.000 24.24 14.81 0.00 2.85
88 89 0.752054 CCCAGCAGCTCTAGAGAAGG 59.248 60.000 24.24 14.87 0.00 3.46
89 90 1.687682 CCCAGCAGCTCTAGAGAAGGA 60.688 57.143 24.24 0.00 0.00 3.36
90 91 2.106566 CCAGCAGCTCTAGAGAAGGAA 58.893 52.381 24.24 0.00 0.00 3.36
91 92 2.699846 CCAGCAGCTCTAGAGAAGGAAT 59.300 50.000 24.24 0.54 0.00 3.01
92 93 3.894427 CCAGCAGCTCTAGAGAAGGAATA 59.106 47.826 24.24 0.00 0.00 1.75
103 104 9.267084 CTCTAGAGAAGGAATAATTAAACAGGC 57.733 37.037 15.05 0.00 0.00 4.85
125 150 0.178992 CTTTGGGTCTCCAGTGCCAA 60.179 55.000 0.00 0.00 45.04 4.52
149 174 5.435291 TGCACCTGGATTGAAAAACAAAAT 58.565 33.333 0.00 0.00 42.03 1.82
218 243 6.927416 ACAAACGATGTAGTGTTATACTGGA 58.073 36.000 0.00 0.00 41.63 3.86
221 246 7.870509 AACGATGTAGTGTTATACTGGAGTA 57.129 36.000 0.00 0.00 40.65 2.59
233 258 7.502895 TGTTATACTGGAGTAAAAAGTTTGGCA 59.497 33.333 0.00 0.00 33.76 4.92
250 275 6.480981 AGTTTGGCAAAGAAATGACTTTCATG 59.519 34.615 13.94 0.00 42.71 3.07
333 1303 8.399425 TCACACTTTTTCTACTCGCAAATTAAA 58.601 29.630 0.00 0.00 0.00 1.52
335 1305 9.233232 ACACTTTTTCTACTCGCAAATTAAAAG 57.767 29.630 0.00 0.00 37.37 2.27
388 1360 2.107950 TTTCTCCATTGTAGCCCGTG 57.892 50.000 0.00 0.00 0.00 4.94
475 1449 4.452795 GGAAGTAGCACTGGTTTTTCTCTC 59.547 45.833 0.00 0.00 0.00 3.20
518 1497 2.094338 GGTTTAGGTCGGTCAGGTGTAG 60.094 54.545 0.00 0.00 0.00 2.74
586 1565 9.990360 TTAGGTTTTTGAGTTGGGATTAATTTC 57.010 29.630 0.00 0.00 0.00 2.17
641 1621 7.336176 AGTTTTCGAGTTATTCATCCCCTAAAC 59.664 37.037 0.00 0.00 0.00 2.01
655 1635 7.288389 TCATCCCCTAAACGTTATAGTATGTGT 59.712 37.037 0.00 0.00 0.00 3.72
678 1669 1.669760 GGCAATGGTCGTTCGGTGA 60.670 57.895 0.00 0.00 0.00 4.02
709 1700 9.621629 TGGACCTCGATGTAATTTATGTTTAAT 57.378 29.630 0.00 0.00 0.00 1.40
816 1875 7.892778 TTAATTGTCACTCGTGCTACAATTA 57.107 32.000 21.04 21.04 41.78 1.40
817 1876 6.985188 AATTGTCACTCGTGCTACAATTAT 57.015 33.333 19.64 5.90 41.78 1.28
831 1930 9.463443 GTGCTACAATTATGAAAGAAGTGTTTT 57.537 29.630 0.00 0.00 36.57 2.43
856 1955 1.218047 GCTCATGACAGCCCGTACA 59.782 57.895 0.00 0.00 32.76 2.90
864 1963 3.068560 TGACAGCCCGTACAACAAATAC 58.931 45.455 0.00 0.00 0.00 1.89
865 1964 2.417586 GACAGCCCGTACAACAAATACC 59.582 50.000 0.00 0.00 0.00 2.73
915 2014 1.229428 AAGCCCGCATCGATTATGTG 58.771 50.000 0.00 0.00 44.29 3.21
977 2077 0.039708 GCAGCAGCAAAGACAGGAAC 60.040 55.000 0.00 0.00 41.58 3.62
1189 2354 1.411216 GGATCCAGGTCCCGTCTTCTA 60.411 57.143 6.95 0.00 31.82 2.10
1230 2395 1.303317 TTTCCTTTGCTCGGAGCCC 60.303 57.895 26.00 1.53 41.51 5.19
1399 13740 2.626467 GCCCAGGTTCCCCCAATCT 61.626 63.158 0.00 0.00 34.66 2.40
1400 13741 1.615262 CCCAGGTTCCCCCAATCTC 59.385 63.158 0.00 0.00 34.66 2.75
1401 13742 0.921256 CCCAGGTTCCCCCAATCTCT 60.921 60.000 0.00 0.00 34.66 3.10
1402 13743 0.548510 CCAGGTTCCCCCAATCTCTC 59.451 60.000 0.00 0.00 34.66 3.20
1403 13744 1.589414 CAGGTTCCCCCAATCTCTCT 58.411 55.000 0.00 0.00 34.66 3.10
1404 13745 1.488393 CAGGTTCCCCCAATCTCTCTC 59.512 57.143 0.00 0.00 34.66 3.20
1405 13746 1.367848 AGGTTCCCCCAATCTCTCTCT 59.632 52.381 0.00 0.00 34.66 3.10
1406 13747 1.765904 GGTTCCCCCAATCTCTCTCTC 59.234 57.143 0.00 0.00 0.00 3.20
1407 13748 2.628290 GGTTCCCCCAATCTCTCTCTCT 60.628 54.545 0.00 0.00 0.00 3.10
1413 13754 3.139025 CCCCAATCTCTCTCTCTCTCTCT 59.861 52.174 0.00 0.00 0.00 3.10
1422 13763 6.825213 TCTCTCTCTCTCTCTCTCTCATTTTG 59.175 42.308 0.00 0.00 0.00 2.44
1436 13779 4.077822 CTCATTTTGTCTTGCCTTCTCCT 58.922 43.478 0.00 0.00 0.00 3.69
1456 13925 8.946797 TCTCCTTTCTCAGATATGATGATGTA 57.053 34.615 0.00 0.00 0.00 2.29
1460 13929 9.939802 CCTTTCTCAGATATGATGATGTATTGA 57.060 33.333 0.00 0.00 0.00 2.57
1469 13942 9.486497 GATATGATGATGTATTGAGTGTTGACT 57.514 33.333 0.00 0.00 33.98 3.41
1474 13947 7.889589 TGATGTATTGAGTGTTGACTAACTG 57.110 36.000 0.00 0.00 37.68 3.16
1484 13957 2.614057 GTTGACTAACTGTGCTTGTGCT 59.386 45.455 0.00 0.00 35.60 4.40
1494 13968 0.460722 TGCTTGTGCTGCAACATTGT 59.539 45.000 2.77 0.00 40.48 2.71
1537 14011 3.436704 TGCTGCTGTTGCTTAGTAACATC 59.563 43.478 15.60 12.35 37.49 3.06
1628 14110 8.442374 ACAACCTAGAATTTACTTTAGAACCCA 58.558 33.333 0.00 0.00 0.00 4.51
1632 14114 7.491696 CCTAGAATTTACTTTAGAACCCACTCG 59.508 40.741 0.00 0.00 0.00 4.18
1688 14170 4.012374 CACCATCAAAATACTCTGCAGGT 58.988 43.478 15.13 13.13 0.00 4.00
1689 14171 4.012374 ACCATCAAAATACTCTGCAGGTG 58.988 43.478 15.13 9.92 0.00 4.00
1690 14172 3.181493 CCATCAAAATACTCTGCAGGTGC 60.181 47.826 15.13 0.00 42.50 5.01
1742 14229 2.022195 CCACAAGATGGCCTCATGAAG 58.978 52.381 3.32 0.00 43.24 3.02
1747 14234 5.008415 CACAAGATGGCCTCATGAAGTAATC 59.992 44.000 3.32 0.00 32.98 1.75
1751 14238 4.090761 TGGCCTCATGAAGTAATCCATC 57.909 45.455 3.32 0.00 0.00 3.51
1752 14239 3.181440 TGGCCTCATGAAGTAATCCATCC 60.181 47.826 3.32 0.00 0.00 3.51
1753 14240 3.181440 GGCCTCATGAAGTAATCCATCCA 60.181 47.826 0.00 0.00 0.00 3.41
1754 14241 4.508047 GGCCTCATGAAGTAATCCATCCAT 60.508 45.833 0.00 0.00 0.00 3.41
1795 14282 2.367202 GCCACTCCCTCCGATCCAA 61.367 63.158 0.00 0.00 0.00 3.53
1796 14283 1.700042 GCCACTCCCTCCGATCCAAT 61.700 60.000 0.00 0.00 0.00 3.16
1797 14284 0.839946 CCACTCCCTCCGATCCAATT 59.160 55.000 0.00 0.00 0.00 2.32
1799 14286 2.292267 CACTCCCTCCGATCCAATTTG 58.708 52.381 0.00 0.00 0.00 2.32
1802 14289 1.134098 TCCCTCCGATCCAATTTGAGC 60.134 52.381 0.00 0.00 0.00 4.26
1803 14290 1.133976 CCCTCCGATCCAATTTGAGCT 60.134 52.381 0.00 0.00 0.00 4.09
1804 14291 2.104792 CCCTCCGATCCAATTTGAGCTA 59.895 50.000 0.00 0.00 0.00 3.32
1805 14292 3.433598 CCCTCCGATCCAATTTGAGCTAA 60.434 47.826 0.00 0.00 0.00 3.09
1806 14293 4.199310 CCTCCGATCCAATTTGAGCTAAA 58.801 43.478 0.00 0.00 0.00 1.85
1807 14294 4.640201 CCTCCGATCCAATTTGAGCTAAAA 59.360 41.667 0.00 0.00 0.00 1.52
1808 14295 5.449177 CCTCCGATCCAATTTGAGCTAAAAC 60.449 44.000 0.00 0.00 0.00 2.43
1809 14296 4.398044 TCCGATCCAATTTGAGCTAAAACC 59.602 41.667 0.00 0.00 0.00 3.27
1810 14297 4.157656 CCGATCCAATTTGAGCTAAAACCA 59.842 41.667 0.00 0.00 0.00 3.67
1812 14299 5.745294 CGATCCAATTTGAGCTAAAACCATG 59.255 40.000 0.00 0.00 0.00 3.66
1813 14300 6.404623 CGATCCAATTTGAGCTAAAACCATGA 60.405 38.462 0.00 0.00 0.00 3.07
1814 14301 6.024552 TCCAATTTGAGCTAAAACCATGAC 57.975 37.500 0.00 0.00 0.00 3.06
1815 14302 5.538053 TCCAATTTGAGCTAAAACCATGACA 59.462 36.000 0.00 0.00 0.00 3.58
1816 14303 5.634859 CCAATTTGAGCTAAAACCATGACAC 59.365 40.000 0.00 0.00 0.00 3.67
1856 14360 9.833917 GAGGGAGCAGTACTTATTAGTAAAAAT 57.166 33.333 0.00 0.00 38.55 1.82
1902 14552 6.198403 TGCTTTTACTCTCTTCGTATATTGCG 59.802 38.462 0.00 0.00 0.00 4.85
1908 14558 3.005367 TCTCTTCGTATATTGCGCATCCA 59.995 43.478 12.75 0.00 0.00 3.41
1909 14559 3.723260 TCTTCGTATATTGCGCATCCAA 58.277 40.909 12.75 0.00 0.00 3.53
2008 14675 1.321474 ATGTGCTGATTATTGGGGCG 58.679 50.000 0.00 0.00 0.00 6.13
2101 15545 5.125417 TGTGTATCCTTGCTTGCTTATTTCC 59.875 40.000 0.00 0.00 0.00 3.13
2214 15708 0.679505 CCGACACCTGGAGTTTCAGA 59.320 55.000 0.00 0.00 36.93 3.27
2215 15709 1.337260 CCGACACCTGGAGTTTCAGAG 60.337 57.143 0.00 0.00 36.93 3.35
2231 15725 0.835941 AGAGGCTGCCTGACTAATGG 59.164 55.000 28.82 0.00 31.30 3.16
2236 15730 3.973973 AGGCTGCCTGACTAATGGTTATA 59.026 43.478 22.71 0.00 29.57 0.98
2241 15735 6.094881 GCTGCCTGACTAATGGTTATACAAAA 59.905 38.462 0.00 0.00 0.00 2.44
2244 15738 7.122055 TGCCTGACTAATGGTTATACAAAAAGG 59.878 37.037 0.00 0.00 0.00 3.11
2290 15810 5.475909 ACAATTTAGTAGTCTCACTCGTGGA 59.524 40.000 0.00 0.00 0.00 4.02
2296 15816 0.674534 GTCTCACTCGTGGAAGTGGT 59.325 55.000 4.36 0.00 45.47 4.16
2297 15817 1.068741 GTCTCACTCGTGGAAGTGGTT 59.931 52.381 4.36 0.00 45.47 3.67
2298 15818 1.340248 TCTCACTCGTGGAAGTGGTTC 59.660 52.381 4.36 0.00 45.47 3.62
2300 15820 1.691976 TCACTCGTGGAAGTGGTTCAT 59.308 47.619 4.36 0.00 45.47 2.57
2301 15821 2.894765 TCACTCGTGGAAGTGGTTCATA 59.105 45.455 4.36 0.00 45.47 2.15
2312 15832 6.425721 TGGAAGTGGTTCATACTTTAACTTCG 59.574 38.462 0.00 0.00 41.75 3.79
2315 15840 9.362539 GAAGTGGTTCATACTTTAACTTCGATA 57.637 33.333 0.00 0.00 38.42 2.92
2385 15910 8.835439 TGCAGATTTTATTGATAAAGTGCGATA 58.165 29.630 15.31 0.00 37.69 2.92
2400 15925 5.593010 AGTGCGATAGTCCTAGATTTGTTC 58.407 41.667 0.00 0.00 39.35 3.18
2537 16062 8.933807 CATGGTATCAGATTATTACAAGAGCTG 58.066 37.037 0.00 0.00 0.00 4.24
2564 16089 8.375506 TCTAATGTATGGATGGGTAATCTTGAC 58.624 37.037 0.00 0.00 35.43 3.18
2614 16139 2.481854 CAGCATCTGGTACATCTCAGC 58.518 52.381 0.00 0.00 38.20 4.26
2649 16174 2.162408 GGGAAGCAGTTTCTTGGATTCG 59.838 50.000 0.00 0.00 36.03 3.34
2763 16288 7.573968 AATGAAAGCTTTTGTCTGAAGTACT 57.426 32.000 14.05 0.00 0.00 2.73
2764 16289 6.363577 TGAAAGCTTTTGTCTGAAGTACTG 57.636 37.500 14.05 0.00 0.00 2.74
2766 16291 6.258727 TGAAAGCTTTTGTCTGAAGTACTGAG 59.741 38.462 14.05 0.00 0.00 3.35
2768 16293 6.406692 AGCTTTTGTCTGAAGTACTGAGTA 57.593 37.500 0.00 0.00 0.00 2.59
2777 16307 6.377712 GTCTGAAGTACTGAGTAGGTGGTTAT 59.622 42.308 0.00 0.00 0.00 1.89
2870 16413 3.646637 GGCCTCTTACTTAAGCATCCCTA 59.353 47.826 1.29 0.00 33.40 3.53
3046 16597 1.667724 CCTGATGATCCGTTTCAGTGC 59.332 52.381 9.71 0.00 36.06 4.40
3052 16603 4.389576 CCGTTTCAGTGCAGCGCC 62.390 66.667 2.29 0.00 0.00 6.53
3077 16628 1.074423 ATTGCTGCCACTGCTCTGT 59.926 52.632 0.00 0.00 38.71 3.41
3095 16646 3.056536 TCTGTTCCTCATGACTGCTACAC 60.057 47.826 0.00 0.00 0.00 2.90
3122 16690 3.641434 AGATTGCTGCTGGTAACTCAT 57.359 42.857 0.00 0.00 37.61 2.90
3123 16691 3.539604 AGATTGCTGCTGGTAACTCATC 58.460 45.455 0.00 0.00 37.61 2.92
3124 16692 3.199508 AGATTGCTGCTGGTAACTCATCT 59.800 43.478 0.00 0.00 37.61 2.90
3125 16693 2.680312 TGCTGCTGGTAACTCATCTC 57.320 50.000 0.00 0.00 37.61 2.75
3126 16694 1.901833 TGCTGCTGGTAACTCATCTCA 59.098 47.619 0.00 0.00 37.61 3.27
3150 17873 2.738013 ATGCTCTGCTTTCCTTTTGC 57.262 45.000 0.00 0.00 0.00 3.68
3151 17874 1.696063 TGCTCTGCTTTCCTTTTGCT 58.304 45.000 0.00 0.00 0.00 3.91
3154 17877 1.612463 CTCTGCTTTCCTTTTGCTGCT 59.388 47.619 0.00 0.00 0.00 4.24
3173 17896 0.752658 TGAGGTCGGCAGTCCATATG 59.247 55.000 2.78 0.00 0.00 1.78
3194 17921 1.527311 GGCTTAGATTTTAGGCTCGCG 59.473 52.381 0.00 0.00 34.40 5.87
3204 20257 1.448985 TAGGCTCGCGCATTTCTTTT 58.551 45.000 8.75 0.00 38.10 2.27
3224 20277 2.762745 TCGAAGCTTTAGCCGAACTTT 58.237 42.857 0.00 0.00 43.38 2.66
3235 20288 3.460103 AGCCGAACTTTTCTTCGTTGTA 58.540 40.909 1.11 0.00 41.24 2.41
3273 20326 7.177216 TCACTTGCAATGGAAAACATAGAGAAT 59.823 33.333 0.00 0.00 39.40 2.40
3274 20327 7.816031 CACTTGCAATGGAAAACATAGAGAATT 59.184 33.333 0.00 0.00 39.40 2.17
3275 20328 8.370182 ACTTGCAATGGAAAACATAGAGAATTT 58.630 29.630 0.00 0.00 39.40 1.82
3276 20329 9.211485 CTTGCAATGGAAAACATAGAGAATTTT 57.789 29.630 0.00 0.00 39.40 1.82
3277 20330 9.558396 TTGCAATGGAAAACATAGAGAATTTTT 57.442 25.926 0.00 0.00 39.40 1.94
3296 20349 3.512033 TTTTGTGTGTGTGGGCTAAAC 57.488 42.857 0.00 0.00 0.00 2.01
3297 20350 2.130272 TTGTGTGTGTGGGCTAAACA 57.870 45.000 0.00 0.00 0.00 2.83
3298 20351 2.356665 TGTGTGTGTGGGCTAAACAT 57.643 45.000 0.00 0.00 0.00 2.71
3299 20352 3.493767 TGTGTGTGTGGGCTAAACATA 57.506 42.857 0.00 0.00 0.00 2.29
3300 20353 3.407698 TGTGTGTGTGGGCTAAACATAG 58.592 45.455 0.00 0.00 0.00 2.23
3301 20354 3.071747 TGTGTGTGTGGGCTAAACATAGA 59.928 43.478 0.00 0.00 0.00 1.98
3302 20355 3.684788 GTGTGTGTGGGCTAAACATAGAG 59.315 47.826 0.00 0.00 0.00 2.43
3303 20356 3.580895 TGTGTGTGGGCTAAACATAGAGA 59.419 43.478 0.00 0.00 0.00 3.10
3304 20357 4.041075 TGTGTGTGGGCTAAACATAGAGAA 59.959 41.667 0.00 0.00 0.00 2.87
3360 20417 3.418047 AGACCAAACCTCATTTAACCCG 58.582 45.455 0.00 0.00 0.00 5.28
3400 20457 2.930040 CGTACGACAGAGATTGGCAAAT 59.070 45.455 10.44 0.00 32.77 2.32
3403 20460 5.918576 CGTACGACAGAGATTGGCAAATATA 59.081 40.000 10.44 0.00 32.77 0.86
3429 20486 1.070601 CATATCGACAGGGGCATCACA 59.929 52.381 0.00 0.00 0.00 3.58
3430 20487 1.199615 TATCGACAGGGGCATCACAA 58.800 50.000 0.00 0.00 0.00 3.33
3431 20488 0.327924 ATCGACAGGGGCATCACAAA 59.672 50.000 0.00 0.00 0.00 2.83
3435 20492 2.450476 GACAGGGGCATCACAAAGATT 58.550 47.619 0.00 0.00 33.72 2.40
3436 20493 2.165030 GACAGGGGCATCACAAAGATTG 59.835 50.000 0.00 0.00 33.72 2.67
3437 20494 1.479323 CAGGGGCATCACAAAGATTGG 59.521 52.381 0.00 0.00 33.72 3.16
3438 20495 0.176449 GGGGCATCACAAAGATTGGC 59.824 55.000 0.00 0.00 33.72 4.52
3439 20496 0.896923 GGGCATCACAAAGATTGGCA 59.103 50.000 0.00 0.00 33.72 4.92
3440 20497 1.275856 GGGCATCACAAAGATTGGCAA 59.724 47.619 0.68 0.68 33.72 4.52
3441 20498 2.289569 GGGCATCACAAAGATTGGCAAA 60.290 45.455 3.01 0.00 33.72 3.68
3442 20499 3.602483 GGCATCACAAAGATTGGCAAAT 58.398 40.909 3.01 0.00 33.72 2.32
3443 20500 4.382901 GGGCATCACAAAGATTGGCAAATA 60.383 41.667 3.01 0.00 33.72 1.40
3444 20501 5.362263 GGCATCACAAAGATTGGCAAATAT 58.638 37.500 3.01 0.00 33.72 1.28
3445 20502 6.462768 GGGCATCACAAAGATTGGCAAATATA 60.463 38.462 3.01 0.00 33.72 0.86
3446 20503 6.421801 GGCATCACAAAGATTGGCAAATATAC 59.578 38.462 3.01 0.00 33.72 1.47
3447 20504 6.421801 GCATCACAAAGATTGGCAAATATACC 59.578 38.462 3.01 0.00 33.72 2.73
3448 20505 7.490840 CATCACAAAGATTGGCAAATATACCA 58.509 34.615 3.01 0.00 33.72 3.25
3449 20506 6.862209 TCACAAAGATTGGCAAATATACCAC 58.138 36.000 3.01 0.00 35.10 4.16
3455 20512 2.992593 TGGCAAATATACCACGCAAGA 58.007 42.857 0.00 0.00 43.62 3.02
3456 20513 3.550820 TGGCAAATATACCACGCAAGAT 58.449 40.909 0.00 0.00 43.62 2.40
3470 20527 3.798878 ACGCAAGATGTCAGTCAATATCG 59.201 43.478 0.00 0.00 43.62 2.92
3475 20532 5.193663 AGATGTCAGTCAATATCGTGAGG 57.806 43.478 0.00 0.00 0.00 3.86
3524 20581 5.129485 AGTCTCAGAAGAAGAGGTTGTTGAA 59.871 40.000 0.00 0.00 33.92 2.69
3551 20608 1.002468 GATGATTTCCCCAACGATGCG 60.002 52.381 0.00 0.00 0.00 4.73
3566 20623 1.695893 ATGCGCATCGAGAAACACCG 61.696 55.000 19.28 0.00 0.00 4.94
3568 20625 1.421410 GCGCATCGAGAAACACCGAT 61.421 55.000 0.30 0.00 45.17 4.18
3660 20746 0.978907 TCCGGGGAAGAAACAGGTAC 59.021 55.000 0.00 0.00 0.00 3.34
3661 20747 0.390735 CCGGGGAAGAAACAGGTACG 60.391 60.000 0.00 0.00 0.00 3.67
3663 20749 1.545582 CGGGGAAGAAACAGGTACGTA 59.454 52.381 0.00 0.00 0.00 3.57
3669 20755 0.388907 GAAACAGGTACGTAGCGGCA 60.389 55.000 22.05 0.00 0.00 5.69
3680 20766 1.153369 TAGCGGCACAAGATCTGGC 60.153 57.895 1.45 0.35 0.00 4.85
3682 20768 2.758089 GCGGCACAAGATCTGGCAG 61.758 63.158 8.58 8.58 33.84 4.85
3706 20792 2.962421 GTGTCTAGGATCAGGGAGAAGG 59.038 54.545 0.00 0.00 0.00 3.46
3745 21041 1.339727 GGACCAGGTACCATTGGACAC 60.340 57.143 23.52 14.40 37.89 3.67
3785 21081 2.867975 CCGGTCGACATAATTGGTAACC 59.132 50.000 18.91 0.00 0.00 2.85
3799 21095 0.733150 GTAACCGGAAGAGCAATGCC 59.267 55.000 9.46 0.00 0.00 4.40
3820 21117 5.409214 TGCCAACCTACGTAAGAAATGTTAC 59.591 40.000 0.00 0.00 43.62 2.50
3848 21145 9.480053 TGATTAACGTAAAAGCTTAGTAACAGT 57.520 29.630 0.00 0.00 0.00 3.55
3867 21164 4.021981 ACAGTTTCGTAGGTGTAGGGTTAC 60.022 45.833 0.00 0.00 0.00 2.50
3876 21173 6.350445 CGTAGGTGTAGGGTTACTGTTGTTAT 60.350 42.308 0.00 0.00 0.00 1.89
3891 21188 3.857157 TGTTATATTCCACCTCAGCCC 57.143 47.619 0.00 0.00 0.00 5.19
3909 21206 2.934553 GCCCTTACGTTAATCACCTGTC 59.065 50.000 0.00 0.00 0.00 3.51
3910 21207 3.184541 CCCTTACGTTAATCACCTGTCG 58.815 50.000 0.00 0.00 0.00 4.35
3932 21229 4.096532 CGAGTAGAAGCTCTTGGACATGTA 59.903 45.833 0.00 0.00 33.55 2.29
3933 21230 5.587289 GAGTAGAAGCTCTTGGACATGTAG 58.413 45.833 0.00 0.00 32.99 2.74
3934 21231 3.902881 AGAAGCTCTTGGACATGTAGG 57.097 47.619 0.00 0.00 0.00 3.18
3995 21292 3.987745 TCTAATCCAAGCAGAGTCTCCT 58.012 45.455 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.443176 TCATGGGAAATTCATTCTCTAGCTTAT 58.557 33.333 0.00 0.00 39.44 1.73
5 6 6.666678 TCATGGGAAATTCATTCTCTAGCTT 58.333 36.000 0.00 0.00 39.44 3.74
8 9 6.512415 GCGTTCATGGGAAATTCATTCTCTAG 60.512 42.308 0.00 0.00 39.44 2.43
67 68 2.318908 CTTCTCTAGAGCTGCTGGGAT 58.681 52.381 15.35 0.00 0.00 3.85
68 69 1.687682 CCTTCTCTAGAGCTGCTGGGA 60.688 57.143 15.35 0.00 0.00 4.37
69 70 0.752054 CCTTCTCTAGAGCTGCTGGG 59.248 60.000 15.35 6.50 0.00 4.45
70 71 1.774110 TCCTTCTCTAGAGCTGCTGG 58.226 55.000 15.35 11.35 0.00 4.85
71 72 5.528043 TTATTCCTTCTCTAGAGCTGCTG 57.472 43.478 15.35 2.03 0.00 4.41
72 73 6.745794 AATTATTCCTTCTCTAGAGCTGCT 57.254 37.500 15.35 0.00 0.00 4.24
73 74 8.769891 GTTTAATTATTCCTTCTCTAGAGCTGC 58.230 37.037 15.35 0.00 0.00 5.25
77 78 9.267084 GCCTGTTTAATTATTCCTTCTCTAGAG 57.733 37.037 13.98 13.98 0.00 2.43
78 79 8.768397 TGCCTGTTTAATTATTCCTTCTCTAGA 58.232 33.333 0.00 0.00 0.00 2.43
79 80 8.964476 TGCCTGTTTAATTATTCCTTCTCTAG 57.036 34.615 0.00 0.00 0.00 2.43
80 81 9.561069 GATGCCTGTTTAATTATTCCTTCTCTA 57.439 33.333 0.00 0.00 0.00 2.43
81 82 8.277918 AGATGCCTGTTTAATTATTCCTTCTCT 58.722 33.333 0.00 0.00 0.00 3.10
82 83 8.457238 AGATGCCTGTTTAATTATTCCTTCTC 57.543 34.615 0.00 0.00 0.00 2.87
83 84 8.829373 AAGATGCCTGTTTAATTATTCCTTCT 57.171 30.769 0.00 0.00 0.00 2.85
84 85 9.305925 CAAAGATGCCTGTTTAATTATTCCTTC 57.694 33.333 0.00 0.00 0.00 3.46
85 86 8.260114 CCAAAGATGCCTGTTTAATTATTCCTT 58.740 33.333 0.00 0.00 0.00 3.36
86 87 7.147672 CCCAAAGATGCCTGTTTAATTATTCCT 60.148 37.037 0.00 0.00 0.00 3.36
87 88 6.986231 CCCAAAGATGCCTGTTTAATTATTCC 59.014 38.462 0.00 0.00 0.00 3.01
88 89 7.555965 ACCCAAAGATGCCTGTTTAATTATTC 58.444 34.615 0.00 0.00 0.00 1.75
89 90 7.400052 AGACCCAAAGATGCCTGTTTAATTATT 59.600 33.333 0.00 0.00 0.00 1.40
90 91 6.897413 AGACCCAAAGATGCCTGTTTAATTAT 59.103 34.615 0.00 0.00 0.00 1.28
91 92 6.252995 AGACCCAAAGATGCCTGTTTAATTA 58.747 36.000 0.00 0.00 0.00 1.40
92 93 5.086621 AGACCCAAAGATGCCTGTTTAATT 58.913 37.500 0.00 0.00 0.00 1.40
103 104 1.457346 GCACTGGAGACCCAAAGATG 58.543 55.000 0.00 0.00 42.98 2.90
125 150 4.686191 TTGTTTTTCAATCCAGGTGCAT 57.314 36.364 0.00 0.00 0.00 3.96
165 190 7.765819 CCAAAAAGTCTCAGGAAATTTTTGACT 59.234 33.333 17.81 0.15 43.64 3.41
176 201 5.392595 CGTTTGTTTCCAAAAAGTCTCAGGA 60.393 40.000 0.00 0.00 41.99 3.86
177 202 4.798387 CGTTTGTTTCCAAAAAGTCTCAGG 59.202 41.667 0.00 0.00 41.99 3.86
179 204 5.630661 TCGTTTGTTTCCAAAAAGTCTCA 57.369 34.783 0.00 0.00 41.99 3.27
180 205 6.033966 ACATCGTTTGTTTCCAAAAAGTCTC 58.966 36.000 0.00 0.00 41.99 3.36
181 206 5.961272 ACATCGTTTGTTTCCAAAAAGTCT 58.039 33.333 0.00 0.00 41.99 3.24
183 208 6.750039 CACTACATCGTTTGTTTCCAAAAAGT 59.250 34.615 0.00 0.00 41.99 2.66
184 209 6.750039 ACACTACATCGTTTGTTTCCAAAAAG 59.250 34.615 0.00 0.00 41.99 2.27
187 212 5.821516 ACACTACATCGTTTGTTTCCAAA 57.178 34.783 0.00 0.00 39.87 3.28
188 213 5.821516 AACACTACATCGTTTGTTTCCAA 57.178 34.783 0.00 0.00 39.87 3.53
199 224 9.577110 TTTTTACTCCAGTATAACACTACATCG 57.423 33.333 0.00 0.00 34.98 3.84
218 243 8.040727 AGTCATTTCTTTGCCAAACTTTTTACT 58.959 29.630 0.00 0.00 0.00 2.24
221 246 7.686438 AAGTCATTTCTTTGCCAAACTTTTT 57.314 28.000 0.00 0.00 0.00 1.94
229 254 4.344679 ACCATGAAAGTCATTTCTTTGCCA 59.655 37.500 0.00 0.00 44.35 4.92
233 258 9.492973 CCAAAATACCATGAAAGTCATTTCTTT 57.507 29.630 0.00 0.00 44.35 2.52
318 1288 7.253321 GGCGATTTTCTTTTAATTTGCGAGTAG 60.253 37.037 0.00 0.00 0.00 2.57
333 1303 5.070685 AGTTAACTTCAGGGCGATTTTCTT 58.929 37.500 1.12 0.00 0.00 2.52
335 1305 6.315393 TCATAGTTAACTTCAGGGCGATTTTC 59.685 38.462 14.49 0.00 0.00 2.29
337 1307 5.741011 TCATAGTTAACTTCAGGGCGATTT 58.259 37.500 14.49 0.00 0.00 2.17
338 1308 5.353394 TCATAGTTAACTTCAGGGCGATT 57.647 39.130 14.49 0.00 0.00 3.34
339 1309 5.353394 TTCATAGTTAACTTCAGGGCGAT 57.647 39.130 14.49 0.00 0.00 4.58
341 1311 6.436843 AAATTCATAGTTAACTTCAGGGCG 57.563 37.500 14.49 0.00 0.00 6.13
388 1360 4.590850 AAAACTGAACCTTTCTGCCATC 57.409 40.909 0.00 0.00 32.51 3.51
481 1460 7.703197 CGACCTAAACCTTTGCTTTTTCTAAAA 59.297 33.333 0.00 0.00 0.00 1.52
482 1461 7.197703 CGACCTAAACCTTTGCTTTTTCTAAA 58.802 34.615 0.00 0.00 0.00 1.85
483 1462 6.238814 CCGACCTAAACCTTTGCTTTTTCTAA 60.239 38.462 0.00 0.00 0.00 2.10
484 1463 5.239963 CCGACCTAAACCTTTGCTTTTTCTA 59.760 40.000 0.00 0.00 0.00 2.10
494 1473 2.052468 ACCTGACCGACCTAAACCTTT 58.948 47.619 0.00 0.00 0.00 3.11
586 1565 6.086222 CAGGAACGTGATGATTTAAACTTGG 58.914 40.000 0.00 0.00 0.00 3.61
641 1621 2.313234 CCGCCGACACATACTATAACG 58.687 52.381 0.00 0.00 0.00 3.18
655 1635 4.690719 AACGACCATTGCCGCCGA 62.691 61.111 0.00 0.00 0.00 5.54
678 1669 4.982241 AATTACATCGAGGTCCATGGAT 57.018 40.909 19.62 1.68 0.00 3.41
762 1754 6.350445 GGTCGGAGGAGTACATACTGTAAAAA 60.350 42.308 0.00 0.00 34.21 1.94
763 1755 5.126061 GGTCGGAGGAGTACATACTGTAAAA 59.874 44.000 0.00 0.00 34.21 1.52
764 1756 4.641989 GGTCGGAGGAGTACATACTGTAAA 59.358 45.833 0.00 0.00 34.21 2.01
765 1757 4.080129 AGGTCGGAGGAGTACATACTGTAA 60.080 45.833 0.00 0.00 34.21 2.41
766 1758 3.457380 AGGTCGGAGGAGTACATACTGTA 59.543 47.826 0.00 0.00 36.50 2.74
768 1760 2.933573 AGGTCGGAGGAGTACATACTG 58.066 52.381 0.00 0.00 36.50 2.74
769 1761 4.997545 ATAGGTCGGAGGAGTACATACT 57.002 45.455 0.00 0.00 39.71 2.12
770 1762 8.798859 TTAATATAGGTCGGAGGAGTACATAC 57.201 38.462 0.00 0.00 0.00 2.39
771 1763 9.986157 AATTAATATAGGTCGGAGGAGTACATA 57.014 33.333 0.00 0.00 0.00 2.29
772 1764 8.750298 CAATTAATATAGGTCGGAGGAGTACAT 58.250 37.037 0.00 0.00 0.00 2.29
774 1766 8.120140 ACAATTAATATAGGTCGGAGGAGTAC 57.880 38.462 0.00 0.00 0.00 2.73
786 1812 7.865889 TGTAGCACGAGTGACAATTAATATAGG 59.134 37.037 7.50 0.00 0.00 2.57
846 1945 1.395608 CGGTATTTGTTGTACGGGCTG 59.604 52.381 0.00 0.00 0.00 4.85
856 1955 1.203075 TGAAAGGCCCCGGTATTTGTT 60.203 47.619 0.00 0.00 0.00 2.83
915 2014 2.282783 AAATGGTTGGAAGGGCCGC 61.283 57.895 0.00 0.00 40.66 6.53
963 2063 0.465460 TTGCGGTTCCTGTCTTTGCT 60.465 50.000 0.00 0.00 0.00 3.91
964 2064 0.317854 GTTGCGGTTCCTGTCTTTGC 60.318 55.000 0.00 0.00 0.00 3.68
965 2065 0.310854 GGTTGCGGTTCCTGTCTTTG 59.689 55.000 0.00 0.00 0.00 2.77
1230 2395 3.058160 CGTCAGGGCAAGGGCAAG 61.058 66.667 0.00 0.00 43.71 4.01
1352 12828 4.195334 CCCTTGGCATCCTCGGGG 62.195 72.222 0.00 0.00 32.64 5.73
1391 13728 3.139025 AGAGAGAGAGAGAGAGATTGGGG 59.861 52.174 0.00 0.00 0.00 4.96
1399 13740 6.484288 ACAAAATGAGAGAGAGAGAGAGAGA 58.516 40.000 0.00 0.00 0.00 3.10
1400 13741 6.600822 AGACAAAATGAGAGAGAGAGAGAGAG 59.399 42.308 0.00 0.00 0.00 3.20
1401 13742 6.484288 AGACAAAATGAGAGAGAGAGAGAGA 58.516 40.000 0.00 0.00 0.00 3.10
1402 13743 6.764308 AGACAAAATGAGAGAGAGAGAGAG 57.236 41.667 0.00 0.00 0.00 3.20
1403 13744 6.572119 GCAAGACAAAATGAGAGAGAGAGAGA 60.572 42.308 0.00 0.00 0.00 3.10
1404 13745 5.577945 GCAAGACAAAATGAGAGAGAGAGAG 59.422 44.000 0.00 0.00 0.00 3.20
1405 13746 5.477510 GCAAGACAAAATGAGAGAGAGAGA 58.522 41.667 0.00 0.00 0.00 3.10
1406 13747 4.630940 GGCAAGACAAAATGAGAGAGAGAG 59.369 45.833 0.00 0.00 0.00 3.20
1407 13748 4.285517 AGGCAAGACAAAATGAGAGAGAGA 59.714 41.667 0.00 0.00 0.00 3.10
1413 13754 4.074970 GGAGAAGGCAAGACAAAATGAGA 58.925 43.478 0.00 0.00 0.00 3.27
1422 13763 3.007398 TCTGAGAAAGGAGAAGGCAAGAC 59.993 47.826 0.00 0.00 0.00 3.01
1456 13925 4.708177 AGCACAGTTAGTCAACACTCAAT 58.292 39.130 0.00 0.00 37.10 2.57
1460 13929 3.623060 CACAAGCACAGTTAGTCAACACT 59.377 43.478 0.00 0.00 37.10 3.55
1461 13930 3.788797 GCACAAGCACAGTTAGTCAACAC 60.789 47.826 0.00 0.00 41.58 3.32
1469 13942 1.065401 GTTGCAGCACAAGCACAGTTA 59.935 47.619 0.00 0.00 45.49 2.24
1474 13947 0.856641 CAATGTTGCAGCACAAGCAC 59.143 50.000 5.00 0.00 45.49 4.40
1494 13968 7.544566 GCAGCAAAACTACTACTACTACATGAA 59.455 37.037 0.00 0.00 0.00 2.57
1537 14011 2.880890 GGGAAATACAGGCATACAGCTG 59.119 50.000 13.48 13.48 44.79 4.24
1570 14044 4.494199 GCAGTTTCGTATTACATGACAGGC 60.494 45.833 0.00 0.00 0.00 4.85
1632 14114 4.366586 TCAACTCTTGCATCGATCATCTC 58.633 43.478 0.00 0.00 0.00 2.75
1688 14170 1.140852 ACTGCAAAGAGTACACCTGCA 59.859 47.619 14.19 14.19 40.54 4.41
1689 14171 1.884235 ACTGCAAAGAGTACACCTGC 58.116 50.000 7.70 7.70 0.00 4.85
1690 14172 4.489810 CTCTACTGCAAAGAGTACACCTG 58.510 47.826 14.78 0.00 36.52 4.00
1691 14173 3.511934 CCTCTACTGCAAAGAGTACACCT 59.488 47.826 19.30 0.00 39.09 4.00
1692 14174 3.851098 CCTCTACTGCAAAGAGTACACC 58.149 50.000 19.30 0.00 39.09 4.16
1693 14175 3.056465 AGCCTCTACTGCAAAGAGTACAC 60.056 47.826 19.30 9.57 39.09 2.90
1742 14229 9.388506 CAGGTCTGATAATAATGGATGGATTAC 57.611 37.037 0.00 0.00 0.00 1.89
1747 14234 6.131972 ACCAGGTCTGATAATAATGGATGG 57.868 41.667 0.00 0.00 0.00 3.51
1751 14238 8.840321 CACTTTTACCAGGTCTGATAATAATGG 58.160 37.037 0.00 0.00 0.00 3.16
1752 14239 8.345565 GCACTTTTACCAGGTCTGATAATAATG 58.654 37.037 0.00 0.00 0.00 1.90
1753 14240 7.502561 GGCACTTTTACCAGGTCTGATAATAAT 59.497 37.037 0.00 0.00 0.00 1.28
1754 14241 6.826741 GGCACTTTTACCAGGTCTGATAATAA 59.173 38.462 0.00 0.00 0.00 1.40
1795 14282 6.655078 AAGTGTCATGGTTTTAGCTCAAAT 57.345 33.333 0.00 0.00 0.00 2.32
1796 14283 7.759489 ATAAGTGTCATGGTTTTAGCTCAAA 57.241 32.000 0.00 0.00 0.00 2.69
1797 14284 7.759489 AATAAGTGTCATGGTTTTAGCTCAA 57.241 32.000 0.00 0.00 0.00 3.02
1807 14294 8.811017 CCTCTGATCTATAATAAGTGTCATGGT 58.189 37.037 0.00 0.00 0.00 3.55
1808 14295 8.256605 CCCTCTGATCTATAATAAGTGTCATGG 58.743 40.741 0.00 0.00 0.00 3.66
1809 14296 9.029368 TCCCTCTGATCTATAATAAGTGTCATG 57.971 37.037 0.00 0.00 0.00 3.07
1810 14297 9.253832 CTCCCTCTGATCTATAATAAGTGTCAT 57.746 37.037 0.00 0.00 0.00 3.06
1812 14299 7.177568 TGCTCCCTCTGATCTATAATAAGTGTC 59.822 40.741 0.00 0.00 0.00 3.67
1813 14300 7.013220 TGCTCCCTCTGATCTATAATAAGTGT 58.987 38.462 0.00 0.00 0.00 3.55
1814 14301 7.178274 ACTGCTCCCTCTGATCTATAATAAGTG 59.822 40.741 0.00 0.00 0.00 3.16
1815 14302 7.245292 ACTGCTCCCTCTGATCTATAATAAGT 58.755 38.462 0.00 0.00 0.00 2.24
1816 14303 7.716799 ACTGCTCCCTCTGATCTATAATAAG 57.283 40.000 0.00 0.00 0.00 1.73
1856 14360 7.504924 AGCACTGTAAAAACAATAGCAACTA 57.495 32.000 0.00 0.00 0.00 2.24
1858 14362 7.463469 AAAGCACTGTAAAAACAATAGCAAC 57.537 32.000 0.00 0.00 0.00 4.17
1861 14365 8.797266 AGTAAAAGCACTGTAAAAACAATAGC 57.203 30.769 0.00 0.00 0.00 2.97
1902 14552 0.872388 AAGAAACGACGGTTGGATGC 59.128 50.000 1.08 0.00 36.25 3.91
1908 14558 2.792749 CTTGCAAAAGAAACGACGGTT 58.207 42.857 0.00 0.00 38.22 4.44
1909 14559 1.533129 GCTTGCAAAAGAAACGACGGT 60.533 47.619 0.00 0.00 0.00 4.83
2008 14675 3.554337 CCGTAGACTGGGGTGCAATATAC 60.554 52.174 0.00 0.00 0.00 1.47
2101 15545 6.276091 TCGAATTCTTCTCAGTATGTGGATG 58.724 40.000 3.52 0.00 37.40 3.51
2123 15567 0.034059 AGCACCAACAGAGAACCTCG 59.966 55.000 0.00 0.00 35.36 4.63
2214 15708 0.995024 AACCATTAGTCAGGCAGCCT 59.005 50.000 8.70 8.70 0.00 4.58
2215 15709 2.710096 TAACCATTAGTCAGGCAGCC 57.290 50.000 1.84 1.84 0.00 4.85
2260 15759 9.999009 CGAGTGAGACTACTAAATTGTACATAA 57.001 33.333 0.00 0.00 0.00 1.90
2269 15789 5.711036 ACTTCCACGAGTGAGACTACTAAAT 59.289 40.000 4.59 0.00 0.00 1.40
2271 15791 4.649692 ACTTCCACGAGTGAGACTACTAA 58.350 43.478 4.59 0.00 0.00 2.24
2290 15810 9.715121 TTATCGAAGTTAAAGTATGAACCACTT 57.285 29.630 0.00 0.00 37.85 3.16
2300 15820 8.259411 TGGGTGCTATTTATCGAAGTTAAAGTA 58.741 33.333 0.00 0.00 0.00 2.24
2301 15821 7.107542 TGGGTGCTATTTATCGAAGTTAAAGT 58.892 34.615 0.00 0.00 0.00 2.66
2312 15832 5.106157 CCCGAAATCATGGGTGCTATTTATC 60.106 44.000 0.00 0.00 40.76 1.75
2315 15840 2.958355 CCCGAAATCATGGGTGCTATTT 59.042 45.455 0.00 0.00 40.76 1.40
2385 15910 7.342026 ACCAAAAACTTGAACAAATCTAGGACT 59.658 33.333 0.00 0.00 35.50 3.85
2433 15958 7.742151 TCTCAATACGTTCAAATGATGAGTTG 58.258 34.615 0.00 0.00 39.77 3.16
2537 16062 8.375506 TCAAGATTACCCATCCATACATTAGAC 58.624 37.037 0.00 0.00 31.20 2.59
2564 16089 5.587388 AGAAGCATGGGAAACATTACATG 57.413 39.130 0.00 0.00 42.61 3.21
2640 16165 5.458779 GGAGTCAAACAAAAACGAATCCAAG 59.541 40.000 0.00 0.00 41.21 3.61
2649 16174 9.010029 TGATAATCTAGGGAGTCAAACAAAAAC 57.990 33.333 0.00 0.00 0.00 2.43
2763 16288 9.209048 AGAATACATACAATAACCACCTACTCA 57.791 33.333 0.00 0.00 0.00 3.41
2764 16289 9.694137 GAGAATACATACAATAACCACCTACTC 57.306 37.037 0.00 0.00 0.00 2.59
2766 16291 9.826574 TTGAGAATACATACAATAACCACCTAC 57.173 33.333 0.00 0.00 0.00 3.18
2768 16293 9.342308 CATTGAGAATACATACAATAACCACCT 57.658 33.333 0.00 0.00 32.75 4.00
2777 16307 7.762159 TGTCGTAAGCATTGAGAATACATACAA 59.238 33.333 0.00 0.00 37.18 2.41
2800 16330 7.329717 GGATATTCCTATGAAATCTCACGTGTC 59.670 40.741 16.51 5.77 31.23 3.67
2870 16413 1.800805 CACCTGCAACGATCAAGTCT 58.199 50.000 0.00 0.00 0.00 3.24
3006 16550 0.972883 AGAGACCAAGGAGTGCTCAC 59.027 55.000 1.41 0.00 0.00 3.51
3046 16597 2.180017 GCAATGTCAAGGGCGCTG 59.820 61.111 7.64 0.00 0.00 5.18
3052 16603 0.242825 CAGTGGCAGCAATGTCAAGG 59.757 55.000 0.00 0.00 0.00 3.61
3077 16628 2.899900 ACAGTGTAGCAGTCATGAGGAA 59.100 45.455 0.00 0.00 0.00 3.36
3095 16646 1.284657 CCAGCAGCAATCTACGACAG 58.715 55.000 0.00 0.00 0.00 3.51
3151 17874 3.695606 GGACTGCCGACCTCAGCA 61.696 66.667 0.00 0.00 35.04 4.41
3154 17877 0.752658 CATATGGACTGCCGACCTCA 59.247 55.000 0.00 0.00 36.79 3.86
3173 17896 1.874231 GCGAGCCTAAAATCTAAGCCC 59.126 52.381 0.00 0.00 0.00 5.19
3194 17921 4.324669 GGCTAAAGCTTCGAAAAGAAATGC 59.675 41.667 0.00 0.00 38.57 3.56
3204 20257 2.450609 AAGTTCGGCTAAAGCTTCGA 57.549 45.000 0.00 0.87 41.70 3.71
3235 20288 1.073763 TGCAAGTGAAGCTATGGTGGT 59.926 47.619 0.00 0.00 0.00 4.16
3275 20328 3.258372 TGTTTAGCCCACACACACAAAAA 59.742 39.130 0.00 0.00 0.00 1.94
3276 20329 2.826128 TGTTTAGCCCACACACACAAAA 59.174 40.909 0.00 0.00 0.00 2.44
3277 20330 2.447443 TGTTTAGCCCACACACACAAA 58.553 42.857 0.00 0.00 0.00 2.83
3278 20331 2.130272 TGTTTAGCCCACACACACAA 57.870 45.000 0.00 0.00 0.00 3.33
3279 20332 2.356665 ATGTTTAGCCCACACACACA 57.643 45.000 0.00 0.00 0.00 3.72
3280 20333 3.670625 TCTATGTTTAGCCCACACACAC 58.329 45.455 0.00 0.00 0.00 3.82
3281 20334 3.580895 TCTCTATGTTTAGCCCACACACA 59.419 43.478 0.00 0.00 0.00 3.72
3282 20335 4.202245 TCTCTATGTTTAGCCCACACAC 57.798 45.455 0.00 0.00 0.00 3.82
3283 20336 4.901197 TTCTCTATGTTTAGCCCACACA 57.099 40.909 0.00 0.00 0.00 3.72
3284 20337 6.374333 TGAATTTCTCTATGTTTAGCCCACAC 59.626 38.462 0.00 0.00 0.00 3.82
3285 20338 6.480763 TGAATTTCTCTATGTTTAGCCCACA 58.519 36.000 0.00 0.00 0.00 4.17
3286 20339 7.251281 GTTGAATTTCTCTATGTTTAGCCCAC 58.749 38.462 0.00 0.00 0.00 4.61
3287 20340 6.377146 GGTTGAATTTCTCTATGTTTAGCCCA 59.623 38.462 0.00 0.00 0.00 5.36
3288 20341 6.377146 TGGTTGAATTTCTCTATGTTTAGCCC 59.623 38.462 0.00 0.00 0.00 5.19
3289 20342 7.121315 AGTGGTTGAATTTCTCTATGTTTAGCC 59.879 37.037 0.00 0.00 0.00 3.93
3290 20343 8.045176 AGTGGTTGAATTTCTCTATGTTTAGC 57.955 34.615 0.00 0.00 0.00 3.09
3294 20347 9.574516 ACTTTAGTGGTTGAATTTCTCTATGTT 57.425 29.630 0.00 0.00 0.00 2.71
3297 20350 9.668497 GGTACTTTAGTGGTTGAATTTCTCTAT 57.332 33.333 0.00 0.00 0.00 1.98
3298 20351 8.877195 AGGTACTTTAGTGGTTGAATTTCTCTA 58.123 33.333 0.00 0.00 27.25 2.43
3299 20352 7.746703 AGGTACTTTAGTGGTTGAATTTCTCT 58.253 34.615 0.00 0.00 27.25 3.10
3300 20353 7.981102 AGGTACTTTAGTGGTTGAATTTCTC 57.019 36.000 0.00 0.00 27.25 2.87
3301 20354 8.434392 TGTAGGTACTTTAGTGGTTGAATTTCT 58.566 33.333 0.00 0.00 41.75 2.52
3302 20355 8.611654 TGTAGGTACTTTAGTGGTTGAATTTC 57.388 34.615 0.00 0.00 41.75 2.17
3303 20356 8.983702 TTGTAGGTACTTTAGTGGTTGAATTT 57.016 30.769 0.00 0.00 41.75 1.82
3304 20357 8.434392 TCTTGTAGGTACTTTAGTGGTTGAATT 58.566 33.333 0.00 0.00 41.75 2.17
3360 20417 1.153249 TGGTGGCCTACTATTGCGC 60.153 57.895 3.32 0.00 0.00 6.09
3400 20457 3.513912 CCCCTGTCGATATGCTTGGTATA 59.486 47.826 0.00 0.00 0.00 1.47
3403 20460 0.469917 CCCCTGTCGATATGCTTGGT 59.530 55.000 0.00 0.00 0.00 3.67
3410 20467 1.423584 TGTGATGCCCCTGTCGATAT 58.576 50.000 0.00 0.00 0.00 1.63
3429 20486 4.400884 TGCGTGGTATATTTGCCAATCTTT 59.599 37.500 0.00 0.00 39.53 2.52
3430 20487 3.951037 TGCGTGGTATATTTGCCAATCTT 59.049 39.130 0.00 0.00 39.53 2.40
3431 20488 3.550820 TGCGTGGTATATTTGCCAATCT 58.449 40.909 0.00 0.00 39.53 2.40
3435 20492 2.992593 TCTTGCGTGGTATATTTGCCA 58.007 42.857 0.00 0.00 34.94 4.92
3436 20493 3.315191 ACATCTTGCGTGGTATATTTGCC 59.685 43.478 0.00 0.00 0.00 4.52
3437 20494 4.035091 TGACATCTTGCGTGGTATATTTGC 59.965 41.667 0.00 0.00 0.00 3.68
3438 20495 5.294306 ACTGACATCTTGCGTGGTATATTTG 59.706 40.000 0.00 0.00 0.00 2.32
3439 20496 5.428253 ACTGACATCTTGCGTGGTATATTT 58.572 37.500 0.00 0.00 0.00 1.40
3440 20497 5.023533 ACTGACATCTTGCGTGGTATATT 57.976 39.130 0.00 0.00 0.00 1.28
3441 20498 4.099419 TGACTGACATCTTGCGTGGTATAT 59.901 41.667 0.00 0.00 0.00 0.86
3442 20499 3.445805 TGACTGACATCTTGCGTGGTATA 59.554 43.478 0.00 0.00 0.00 1.47
3443 20500 2.233676 TGACTGACATCTTGCGTGGTAT 59.766 45.455 0.00 0.00 0.00 2.73
3444 20501 1.616374 TGACTGACATCTTGCGTGGTA 59.384 47.619 0.00 0.00 0.00 3.25
3445 20502 0.392706 TGACTGACATCTTGCGTGGT 59.607 50.000 0.00 0.00 0.00 4.16
3446 20503 1.511850 TTGACTGACATCTTGCGTGG 58.488 50.000 0.00 0.00 0.00 4.94
3447 20504 4.317628 CGATATTGACTGACATCTTGCGTG 60.318 45.833 0.00 0.00 0.00 5.34
3448 20505 3.798878 CGATATTGACTGACATCTTGCGT 59.201 43.478 0.00 0.00 0.00 5.24
3449 20506 3.798878 ACGATATTGACTGACATCTTGCG 59.201 43.478 0.00 0.00 0.00 4.85
3455 20512 3.493350 GGCCTCACGATATTGACTGACAT 60.493 47.826 0.00 0.00 0.00 3.06
3456 20513 2.159099 GGCCTCACGATATTGACTGACA 60.159 50.000 0.00 0.00 0.00 3.58
3475 20532 1.099879 AGCAAGATCATCGGCTTGGC 61.100 55.000 0.00 0.00 41.29 4.52
3524 20581 3.081804 GTTGGGGAAATCATCGTCTTGT 58.918 45.455 0.00 0.00 0.00 3.16
3559 20616 2.045561 TGTTGTGTCCATCGGTGTTT 57.954 45.000 0.00 0.00 0.00 2.83
3566 20623 0.999406 CGGTCGATGTTGTGTCCATC 59.001 55.000 0.00 0.00 36.25 3.51
3568 20625 1.666553 GCGGTCGATGTTGTGTCCA 60.667 57.895 0.00 0.00 0.00 4.02
3599 20685 4.393155 TGCTAGGCAGTGGCGGTG 62.393 66.667 11.51 6.65 42.47 4.94
3600 20686 4.394712 GTGCTAGGCAGTGGCGGT 62.395 66.667 11.51 0.00 40.08 5.68
3601 20687 4.393155 TGTGCTAGGCAGTGGCGG 62.393 66.667 11.51 9.48 40.08 6.13
3602 20688 3.121030 GTGTGCTAGGCAGTGGCG 61.121 66.667 11.51 0.00 40.08 5.69
3603 20689 2.747855 GGTGTGCTAGGCAGTGGC 60.748 66.667 9.02 9.02 40.08 5.01
3604 20690 2.434884 CGGTGTGCTAGGCAGTGG 60.435 66.667 0.00 0.00 40.08 4.00
3605 20691 2.434884 CCGGTGTGCTAGGCAGTG 60.435 66.667 0.00 0.00 40.08 3.66
3637 20723 1.407437 CCTGTTTCTTCCCCGGATCAG 60.407 57.143 0.73 0.00 0.00 2.90
3660 20746 1.148157 CCAGATCTTGTGCCGCTACG 61.148 60.000 0.00 0.00 0.00 3.51
3661 20747 1.432270 GCCAGATCTTGTGCCGCTAC 61.432 60.000 0.00 0.00 0.00 3.58
3663 20749 2.437359 GCCAGATCTTGTGCCGCT 60.437 61.111 0.00 0.00 0.00 5.52
3669 20755 3.169099 AGACACTACTGCCAGATCTTGT 58.831 45.455 0.00 0.00 0.00 3.16
3680 20766 4.141287 CTCCCTGATCCTAGACACTACTG 58.859 52.174 0.00 0.00 0.00 2.74
3682 20768 4.440826 TCTCCCTGATCCTAGACACTAC 57.559 50.000 0.00 0.00 0.00 2.73
3767 21063 3.784338 TCCGGTTACCAATTATGTCGAC 58.216 45.455 9.11 9.11 0.00 4.20
3785 21081 0.962356 AGGTTGGCATTGCTCTTCCG 60.962 55.000 8.82 0.00 0.00 4.30
3848 21145 4.151883 ACAGTAACCCTACACCTACGAAA 58.848 43.478 0.00 0.00 0.00 3.46
3867 21164 4.576463 GGCTGAGGTGGAATATAACAACAG 59.424 45.833 0.00 0.00 0.00 3.16
3876 21173 1.760613 CGTAAGGGCTGAGGTGGAATA 59.239 52.381 0.00 0.00 0.00 1.75
3909 21206 3.119316 ACATGTCCAAGAGCTTCTACTCG 60.119 47.826 0.00 0.00 41.77 4.18
3910 21207 4.464069 ACATGTCCAAGAGCTTCTACTC 57.536 45.455 0.00 0.00 36.91 2.59
3932 21229 5.045505 GGTTTTCTCCTTGGAATCTACTCCT 60.046 44.000 0.00 0.00 36.35 3.69
3933 21230 5.045505 AGGTTTTCTCCTTGGAATCTACTCC 60.046 44.000 0.00 0.00 33.52 3.85
3934 21231 6.056090 AGGTTTTCTCCTTGGAATCTACTC 57.944 41.667 0.00 0.00 33.52 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.