Multiple sequence alignment - TraesCS4B01G027400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G027400 chr4B 100.000 8749 0 0 1 8749 20715649 20724397 0.000000e+00 16157.0
1 TraesCS4B01G027400 chr4B 87.709 179 9 4 3990 4168 439319196 439319031 6.930000e-46 196.0
2 TraesCS4B01G027400 chr4B 100.000 78 0 0 4371 4448 20719979 20720056 2.550000e-30 145.0
3 TraesCS4B01G027400 chr4B 100.000 78 0 0 4331 4408 20720019 20720096 2.550000e-30 145.0
4 TraesCS4B01G027400 chr1B 93.785 3395 160 15 4371 7749 35130768 35134127 0.000000e+00 5053.0
5 TraesCS4B01G027400 chr1B 86.704 2858 235 66 1 2770 35126457 35129257 0.000000e+00 3038.0
6 TraesCS4B01G027400 chr1B 94.586 1847 76 9 4371 6213 35700324 35698498 0.000000e+00 2835.0
7 TraesCS4B01G027400 chr1B 95.406 849 27 8 2770 3610 35701754 35700910 0.000000e+00 1341.0
8 TraesCS4B01G027400 chr1B 94.471 850 33 10 2770 3610 35129326 35130170 0.000000e+00 1297.0
9 TraesCS4B01G027400 chr1B 92.718 769 43 5 6991 7749 35689392 35688627 0.000000e+00 1098.0
10 TraesCS4B01G027400 chr1B 94.278 699 34 2 2078 2770 35702520 35701822 0.000000e+00 1064.0
11 TraesCS4B01G027400 chr1B 93.704 683 31 4 3733 4408 35130168 35130845 0.000000e+00 1013.0
12 TraesCS4B01G027400 chr1B 91.825 685 28 5 3733 4408 35700912 35700247 0.000000e+00 929.0
13 TraesCS4B01G027400 chr1B 96.065 432 15 1 6564 6995 35698358 35697929 0.000000e+00 702.0
14 TraesCS4B01G027400 chr1B 81.090 899 89 36 640 1476 35705693 35704814 2.060000e-180 643.0
15 TraesCS4B01G027400 chr1B 86.312 621 40 12 1468 2064 35703175 35702576 1.240000e-177 634.0
16 TraesCS4B01G027400 chr1B 84.906 583 60 14 7932 8505 35688517 35687954 1.650000e-156 564.0
17 TraesCS4B01G027400 chr1B 90.511 411 34 4 1 406 35706102 35705692 9.990000e-149 538.0
18 TraesCS4B01G027400 chr1B 89.781 411 36 5 1 406 35797396 35796987 1.010000e-143 521.0
19 TraesCS4B01G027400 chr1B 88.889 414 38 4 8089 8501 35134290 35134696 3.650000e-138 503.0
20 TraesCS4B01G027400 chr4A 93.191 3099 107 30 4371 7443 591849013 591852033 0.000000e+00 4458.0
21 TraesCS4B01G027400 chr4A 87.053 2294 145 65 44 2270 591844870 591847078 0.000000e+00 2451.0
22 TraesCS4B01G027400 chr4A 95.868 847 20 8 2770 3610 591847575 591848412 0.000000e+00 1356.0
23 TraesCS4B01G027400 chr4A 95.766 685 16 5 3733 4408 591848410 591849090 0.000000e+00 1092.0
24 TraesCS4B01G027400 chr4A 96.833 442 14 0 2329 2770 591847065 591847506 0.000000e+00 739.0
25 TraesCS4B01G027400 chr4A 84.314 459 31 17 4411 4855 109426939 109427370 2.270000e-110 411.0
26 TraesCS4B01G027400 chr4A 87.402 127 12 3 7439 7563 591852508 591852632 9.160000e-30 143.0
27 TraesCS4B01G027400 chr4A 93.478 46 3 0 1737 1782 591848081 591848126 1.580000e-07 69.4
28 TraesCS4B01G027400 chr5A 93.242 2930 117 37 4678 7595 622203853 622200993 0.000000e+00 4239.0
29 TraesCS4B01G027400 chr5A 87.294 2432 132 75 419 2770 622208115 622205781 0.000000e+00 2615.0
30 TraesCS4B01G027400 chr5A 94.431 844 34 8 2770 3610 622205712 622204879 0.000000e+00 1286.0
31 TraesCS4B01G027400 chr5A 93.113 697 23 4 3733 4406 622204881 622204187 0.000000e+00 998.0
32 TraesCS4B01G027400 chr5A 96.255 267 10 0 4371 4637 622204262 622203996 1.040000e-118 438.0
33 TraesCS4B01G027400 chr5A 91.589 214 15 3 7537 7749 622200958 622200747 8.590000e-75 292.0
34 TraesCS4B01G027400 chr5A 96.591 88 2 1 7747 7834 622200645 622200559 2.550000e-30 145.0
35 TraesCS4B01G027400 chr5A 92.045 88 7 0 8313 8400 622199172 622199085 3.320000e-24 124.0
36 TraesCS4B01G027400 chr1D 95.874 2133 79 6 4371 6499 21455733 21453606 0.000000e+00 3443.0
37 TraesCS4B01G027400 chr1D 92.878 1025 45 6 6564 7582 21453603 21452601 0.000000e+00 1463.0
38 TraesCS4B01G027400 chr1D 95.412 850 27 8 2770 3610 21457172 21456326 0.000000e+00 1343.0
39 TraesCS4B01G027400 chr1D 83.862 1481 66 46 762 2135 21459703 21458289 0.000000e+00 1251.0
40 TraesCS4B01G027400 chr1D 93.869 685 21 5 3733 4408 21456328 21455656 0.000000e+00 1013.0
41 TraesCS4B01G027400 chr1D 95.517 580 26 0 2191 2770 21457819 21457240 0.000000e+00 928.0
42 TraesCS4B01G027400 chr1D 84.014 588 62 17 7932 8505 21452046 21451477 3.590000e-148 536.0
43 TraesCS4B01G027400 chr1D 87.406 397 41 7 227 617 21460078 21459685 1.730000e-121 448.0
44 TraesCS4B01G027400 chr1D 86.957 368 47 1 372 738 106962558 106962925 6.320000e-111 412.0
45 TraesCS4B01G027400 chr1D 90.058 171 15 2 8536 8705 21451383 21451214 4.110000e-53 220.0
46 TraesCS4B01G027400 chr4D 95.030 2153 80 17 5605 7749 10972316 10974449 0.000000e+00 3358.0
47 TraesCS4B01G027400 chr4D 92.393 1893 75 33 904 2770 10967553 10969402 0.000000e+00 2634.0
48 TraesCS4B01G027400 chr4D 95.540 852 23 10 2770 3610 10969471 10970318 0.000000e+00 1349.0
49 TraesCS4B01G027400 chr4D 94.915 708 29 2 4982 5682 10971614 10972321 0.000000e+00 1101.0
50 TraesCS4B01G027400 chr4D 94.905 687 20 5 3733 4408 10970316 10970998 0.000000e+00 1061.0
51 TraesCS4B01G027400 chr4D 96.574 613 19 2 4371 4983 10970922 10971532 0.000000e+00 1014.0
52 TraesCS4B01G027400 chr4D 91.000 700 57 4 48 743 10965190 10965887 0.000000e+00 939.0
53 TraesCS4B01G027400 chr4D 92.381 420 24 4 8089 8506 10975849 10976262 7.560000e-165 592.0
54 TraesCS4B01G027400 chr4D 88.079 453 48 5 5026 5474 355854915 355854465 4.650000e-147 532.0
55 TraesCS4B01G027400 chr4D 91.549 213 13 2 8537 8749 10976327 10976534 1.110000e-73 289.0
56 TraesCS4B01G027400 chr4D 84.429 289 26 12 7747 8022 10974554 10974836 5.210000e-67 267.0
57 TraesCS4B01G027400 chr4D 82.051 234 20 9 3385 3610 355858131 355857912 6.980000e-41 180.0
58 TraesCS4B01G027400 chr4D 93.407 91 6 0 4272 4362 355855891 355855801 1.530000e-27 135.0
59 TraesCS4B01G027400 chr4D 95.833 48 1 1 3271 3318 10968363 10968409 9.420000e-10 76.8
60 TraesCS4B01G027400 chr1A 94.393 2140 84 13 4371 6499 23006095 23003981 0.000000e+00 3254.0
61 TraesCS4B01G027400 chr1A 92.520 1016 45 7 6564 7573 23003978 23002988 0.000000e+00 1426.0
62 TraesCS4B01G027400 chr1A 94.953 852 29 8 2770 3610 23007545 23006697 0.000000e+00 1323.0
63 TraesCS4B01G027400 chr1A 94.745 685 24 4 3733 4408 23006699 23006018 0.000000e+00 1055.0
64 TraesCS4B01G027400 chr1A 88.411 906 52 15 1289 2174 23009436 23008564 0.000000e+00 1042.0
65 TraesCS4B01G027400 chr1A 95.667 577 25 0 2194 2770 23008189 23007613 0.000000e+00 928.0
66 TraesCS4B01G027400 chr1A 82.387 863 83 33 433 1230 23010287 23009429 0.000000e+00 688.0
67 TraesCS4B01G027400 chr1A 84.655 580 68 11 7932 8503 23002326 23001760 7.670000e-155 558.0
68 TraesCS4B01G027400 chr1A 92.547 161 8 2 7593 7749 23002594 23002434 2.460000e-55 228.0
69 TraesCS4B01G027400 chr1A 97.710 131 2 1 3608 3738 562906911 562906782 3.180000e-54 224.0
70 TraesCS4B01G027400 chrUn 94.586 1847 76 9 4371 6213 328887143 328888969 0.000000e+00 2835.0
71 TraesCS4B01G027400 chrUn 95.122 574 28 0 2197 2770 440910307 440909734 0.000000e+00 905.0
72 TraesCS4B01G027400 chrUn 91.434 572 21 5 3846 4408 328886668 328887220 0.000000e+00 760.0
73 TraesCS4B01G027400 chrUn 96.231 451 10 5 2770 3214 440909666 440909217 0.000000e+00 732.0
74 TraesCS4B01G027400 chrUn 96.069 407 14 1 6564 6970 328889109 328889513 0.000000e+00 662.0
75 TraesCS4B01G027400 chrUn 86.312 621 40 12 1468 2064 465907242 465906643 1.240000e-177 634.0
76 TraesCS4B01G027400 chrUn 90.754 411 33 4 1 406 379146015 379145605 2.150000e-150 544.0
77 TraesCS4B01G027400 chrUn 90.511 411 34 4 1 406 379147803 379147393 9.990000e-149 538.0
78 TraesCS4B01G027400 chrUn 91.169 385 29 4 1 380 480481771 480481387 1.300000e-142 518.0
79 TraesCS4B01G027400 chrUn 87.952 415 36 10 1065 1476 356845319 356844916 2.210000e-130 477.0
80 TraesCS4B01G027400 chrUn 87.952 415 36 10 1065 1476 356896907 356896504 2.210000e-130 477.0
81 TraesCS4B01G027400 chrUn 87.952 415 36 10 1065 1476 474797249 474796846 2.210000e-130 477.0
82 TraesCS4B01G027400 chrUn 96.296 108 2 2 2078 2184 465906587 465906481 9.030000e-40 176.0
83 TraesCS4B01G027400 chr5D 98.425 127 2 0 3608 3734 59944353 59944479 3.180000e-54 224.0
84 TraesCS4B01G027400 chr5D 97.656 128 3 0 3608 3735 179777667 179777540 4.110000e-53 220.0
85 TraesCS4B01G027400 chr3B 96.970 132 4 0 3604 3735 692220560 692220691 1.140000e-53 222.0
86 TraesCS4B01G027400 chr3B 83.929 112 13 4 8400 8506 513938978 513939089 1.550000e-17 102.0
87 TraesCS4B01G027400 chr5B 96.269 134 5 0 3608 3741 563340508 563340641 4.110000e-53 220.0
88 TraesCS4B01G027400 chr5B 95.556 135 6 0 3600 3734 354738155 354738021 5.320000e-52 217.0
89 TraesCS4B01G027400 chr2B 96.269 134 5 0 3608 3741 547962613 547962480 4.110000e-53 220.0
90 TraesCS4B01G027400 chr6B 95.556 135 6 0 3608 3742 46744507 46744373 5.320000e-52 217.0
91 TraesCS4B01G027400 chr7B 91.026 156 9 5 3608 3759 579349520 579349366 1.150000e-48 206.0
92 TraesCS4B01G027400 chr2D 87.156 109 8 2 8404 8506 638240723 638240831 1.540000e-22 119.0
93 TraesCS4B01G027400 chr2D 86.239 109 8 3 8404 8506 638253920 638254027 2.580000e-20 111.0
94 TraesCS4B01G027400 chr2D 84.545 110 11 2 8403 8506 591142024 591141915 4.320000e-18 104.0
95 TraesCS4B01G027400 chr7A 85.149 101 9 4 8406 8501 12129250 12129151 2.010000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G027400 chr4B 20715649 20724397 8748 False 16157.000000 16157 100.000000 1 8749 1 chr4B.!!$F1 8748
1 TraesCS4B01G027400 chr1B 35126457 35134696 8239 False 2180.800000 5053 91.510600 1 8501 5 chr1B.!!$F1 8500
2 TraesCS4B01G027400 chr1B 35697929 35706102 8173 True 1085.750000 2835 91.259125 1 6995 8 chr1B.!!$R3 6994
3 TraesCS4B01G027400 chr1B 35687954 35689392 1438 True 831.000000 1098 88.812000 6991 8505 2 chr1B.!!$R2 1514
4 TraesCS4B01G027400 chr4A 591844870 591852632 7762 False 1472.628571 4458 92.798714 44 7563 7 chr4A.!!$F2 7519
5 TraesCS4B01G027400 chr5A 622199085 622208115 9030 True 1267.125000 4239 93.070000 419 8400 8 chr5A.!!$R1 7981
6 TraesCS4B01G027400 chr1D 21451214 21460078 8864 True 1182.777778 3443 90.987778 227 8705 9 chr1D.!!$R1 8478
7 TraesCS4B01G027400 chr4D 10965190 10976534 11344 False 1152.800000 3358 93.140818 48 8749 11 chr4D.!!$F1 8701
8 TraesCS4B01G027400 chr4D 355854465 355858131 3666 True 282.333333 532 87.845667 3385 5474 3 chr4D.!!$R1 2089
9 TraesCS4B01G027400 chr1A 23001760 23010287 8527 True 1166.888889 3254 91.142000 433 8503 9 chr1A.!!$R2 8070
10 TraesCS4B01G027400 chrUn 328886668 328889513 2845 False 1419.000000 2835 94.029667 3846 6970 3 chrUn.!!$F1 3124
11 TraesCS4B01G027400 chrUn 440909217 440910307 1090 True 818.500000 905 95.676500 2197 3214 2 chrUn.!!$R6 1017
12 TraesCS4B01G027400 chrUn 379145605 379147803 2198 True 541.000000 544 90.632500 1 406 2 chrUn.!!$R5 405
13 TraesCS4B01G027400 chrUn 465906481 465907242 761 True 405.000000 634 91.304000 1468 2184 2 chrUn.!!$R7 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
638 655 0.250166 GTGCACGGTCCAGGTTACTT 60.250 55.000 0.00 0.0 0.00 2.24 F
1241 2946 0.395862 GACGTGGATGAGGAGGAGGA 60.396 60.000 0.00 0.0 0.00 3.71 F
1505 4922 0.163146 GCGACCGCTGTTGTTAGAAC 59.837 55.000 7.19 0.0 38.26 3.01 F
1830 5260 0.249120 TGGCACTGGAATGTACTCCG 59.751 55.000 0.00 0.0 38.44 4.63 F
2591 7029 1.694150 ACTAGCAAGCAGGAAGTGTGA 59.306 47.619 0.00 0.0 0.00 3.58 F
3626 8163 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.0 44.66 2.17 F
3629 8166 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 F
4370 10657 0.098552 TGCAACTTGTTGTGACTGCG 59.901 50.000 13.97 0.0 32.45 5.18 F
4371 10658 0.098728 GCAACTTGTTGTGACTGCGT 59.901 50.000 13.97 0.0 0.00 5.24 F
5304 12180 0.888619 GCCCTTGCTTAAACTGGGTC 59.111 55.000 0.00 0.0 39.97 4.46 F
6328 13308 0.111639 TTGTTGCCTCCTTGGTACCC 59.888 55.000 10.07 0.0 38.35 3.69 F
6378 13358 1.388547 AACAAGCAAGCTGTTCCGAA 58.611 45.000 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 4922 0.373716 GGCACGGAATCGCTTAGTTG 59.626 55.000 0.00 0.00 40.63 3.16 R
3177 7695 1.470098 CCTGCAGGGACAAAAGATTCG 59.530 52.381 26.14 0.00 37.23 3.34 R
3366 7890 5.523438 AATAACTTTGAGTCCGGCAAAAA 57.477 34.783 0.00 0.00 35.09 1.94 R
3610 8147 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
4391 10678 0.098552 CGCAGTCACAACAAGTTGCA 59.901 50.000 12.54 0.00 44.03 4.08 R
4809 11231 0.325602 AACCAAGCAATTGCCATGGG 59.674 50.000 36.71 28.82 46.65 4.00 R
5352 12228 1.269517 CCTGTCTAGCTTCTCATCCGC 60.270 57.143 0.00 0.00 0.00 5.54 R
5889 12860 1.500474 TGGGAAACAACAAATGGCCA 58.500 45.000 8.56 8.56 0.00 5.36 R
6200 13175 3.197766 TCACCTCAACTTTATCAGGCGAT 59.802 43.478 0.00 0.00 35.50 4.58 R
6922 13906 1.156736 GCACTTGTGCCAGAATACGT 58.843 50.000 14.17 0.00 0.00 3.57 R
7368 14365 1.383456 AACCGCAGCAAGCTTGTCAA 61.383 50.000 26.55 0.00 42.61 3.18 R
8237 18174 1.418637 TGACCGACCTAAACCTTTGCT 59.581 47.619 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.926200 ACAAGAAGCAACTCGATCATCG 59.074 45.455 0.00 0.00 42.10 3.84
50 51 6.957077 CGTAAACAAATTGGTAGTATGAACCG 59.043 38.462 0.00 0.00 40.08 4.44
98 99 6.373216 ACGCTAGCTTTGAAATACAACCAATA 59.627 34.615 13.93 0.00 38.29 1.90
175 178 4.857679 TCATGGTGATGTCATGGAAATGA 58.142 39.130 0.00 0.00 41.51 2.57
185 188 6.897706 TGTCATGGAAATGAAAGACATTGA 57.102 33.333 0.00 0.00 46.90 2.57
254 260 1.202533 AGGGGTAAGTGCATCGATTCG 60.203 52.381 0.00 0.00 0.00 3.34
266 272 5.117287 GTGCATCGATTCGGACTTAATACTC 59.883 44.000 6.18 0.00 0.00 2.59
326 332 1.003118 TCACATTAAAGCGCCAGGAGT 59.997 47.619 2.29 0.00 0.00 3.85
360 366 8.446599 TTGACTAATATTTAGCCCTAACTTGC 57.553 34.615 0.00 0.00 0.00 4.01
362 368 5.995897 ACTAATATTTAGCCCTAACTTGCCG 59.004 40.000 0.00 0.00 0.00 5.69
364 370 3.577805 ATTTAGCCCTAACTTGCCGAT 57.422 42.857 0.00 0.00 0.00 4.18
366 372 4.490899 TTTAGCCCTAACTTGCCGATTA 57.509 40.909 0.00 0.00 0.00 1.75
367 373 4.699925 TTAGCCCTAACTTGCCGATTAT 57.300 40.909 0.00 0.00 0.00 1.28
368 374 5.811796 TTAGCCCTAACTTGCCGATTATA 57.188 39.130 0.00 0.00 0.00 0.98
408 420 9.237187 TGAAACACCATGCATTCTATTAACTAA 57.763 29.630 0.00 0.00 0.00 2.24
413 425 6.209391 ACCATGCATTCTATTAACTAATGGGC 59.791 38.462 0.00 0.00 37.05 5.36
416 428 5.076873 GCATTCTATTAACTAATGGGCCCA 58.923 41.667 30.92 30.92 32.44 5.36
453 465 2.224426 ACAACACCGCTTACATCTTGGA 60.224 45.455 0.00 0.00 0.00 3.53
454 466 2.811431 CAACACCGCTTACATCTTGGAA 59.189 45.455 0.00 0.00 0.00 3.53
457 469 3.252458 ACACCGCTTACATCTTGGAAAAC 59.748 43.478 0.00 0.00 0.00 2.43
497 509 1.837439 TGGTTGTCGATCATAGCCCTT 59.163 47.619 0.00 0.00 0.00 3.95
564 580 7.803724 ACGAGAACAAACATCAACCTTATAAC 58.196 34.615 0.00 0.00 0.00 1.89
593 609 8.534333 TGAAGTACACTTATAGCTTGAACTTG 57.466 34.615 0.00 0.00 36.11 3.16
602 618 2.936202 AGCTTGAACTTGGCTTCTTGA 58.064 42.857 0.00 0.00 31.81 3.02
638 655 0.250166 GTGCACGGTCCAGGTTACTT 60.250 55.000 0.00 0.00 0.00 2.24
838 2365 0.695803 AAGGACTATCAGGGCCAGGG 60.696 60.000 6.18 0.00 0.00 4.45
876 2425 2.574018 GGCCCTGTGAAAAGCCCAC 61.574 63.158 0.00 0.00 39.60 4.61
1054 2726 3.394836 GAGCGGGGCAGGAAGACT 61.395 66.667 0.00 0.00 0.00 3.24
1055 2727 3.378399 GAGCGGGGCAGGAAGACTC 62.378 68.421 0.00 0.00 0.00 3.36
1196 2901 4.154347 GCTGGAGGACGAGCAGGG 62.154 72.222 0.00 0.00 45.02 4.45
1236 2941 1.032657 AGGACGACGTGGATGAGGAG 61.033 60.000 4.58 0.00 0.00 3.69
1237 2942 1.433879 GACGACGTGGATGAGGAGG 59.566 63.158 4.58 0.00 0.00 4.30
1238 2943 1.001269 ACGACGTGGATGAGGAGGA 60.001 57.895 3.97 0.00 0.00 3.71
1239 2944 1.032657 ACGACGTGGATGAGGAGGAG 61.033 60.000 3.97 0.00 0.00 3.69
1240 2945 1.729470 CGACGTGGATGAGGAGGAGG 61.729 65.000 0.00 0.00 0.00 4.30
1241 2946 0.395862 GACGTGGATGAGGAGGAGGA 60.396 60.000 0.00 0.00 0.00 3.71
1242 2947 0.396417 ACGTGGATGAGGAGGAGGAG 60.396 60.000 0.00 0.00 0.00 3.69
1255 2960 0.565674 GGAGGAGGAGGAGGAGGAAT 59.434 60.000 0.00 0.00 0.00 3.01
1284 3031 1.454295 GGAGGAGGAGGGAGACGAC 60.454 68.421 0.00 0.00 0.00 4.34
1287 3034 1.820481 GGAGGAGGGAGACGACGAG 60.820 68.421 0.00 0.00 0.00 4.18
1422 3189 2.183858 GAGGGTTTTTGCGTCGCTCC 62.184 60.000 19.50 12.04 35.90 4.70
1505 4922 0.163146 GCGACCGCTGTTGTTAGAAC 59.837 55.000 7.19 0.00 38.26 3.01
1543 4960 1.305297 TCAGGGTGAGCGAGGACAT 60.305 57.895 0.00 0.00 0.00 3.06
1579 4996 1.470098 GTGCTCGATGCTGGTTGAATT 59.530 47.619 8.07 0.00 43.37 2.17
1580 4997 1.469703 TGCTCGATGCTGGTTGAATTG 59.530 47.619 8.07 0.00 43.37 2.32
1581 4998 1.796617 GCTCGATGCTGGTTGAATTGC 60.797 52.381 0.00 0.00 38.95 3.56
1619 5036 1.636003 ACAGAGGGTGAATTCCTTCCC 59.364 52.381 17.43 17.43 40.16 3.97
1692 5113 4.675510 CAATTTGCATTTACGGCTGAGAT 58.324 39.130 0.00 0.00 0.00 2.75
1739 5160 8.237267 CCAAATCTGTTATTACAACTGGAGTTC 58.763 37.037 0.00 0.00 35.83 3.01
1818 5246 4.758688 TGAGTACTGTGAATATGGCACTG 58.241 43.478 0.00 11.73 39.95 3.66
1830 5260 0.249120 TGGCACTGGAATGTACTCCG 59.751 55.000 0.00 0.00 38.44 4.63
1851 5281 6.808829 TCCGTACATAGTTATTACAACTGGG 58.191 40.000 0.00 0.00 0.00 4.45
1984 5441 5.006746 GTCAGGAAGACATAAATAGTTGCCG 59.993 44.000 0.00 0.00 46.77 5.69
2015 5472 9.338968 TGCTCCCTTGGAATTATAGTAATATCT 57.661 33.333 0.00 0.00 0.00 1.98
2066 5688 7.066284 GGTTGTAATTATCTGCAGTCACTTGAT 59.934 37.037 14.67 0.22 0.00 2.57
2068 5690 7.330262 TGTAATTATCTGCAGTCACTTGATGA 58.670 34.615 14.67 0.00 33.79 2.92
2213 6649 4.503741 TTGTTTAGCAATGAAGGCTGTC 57.496 40.909 0.00 0.00 42.62 3.51
2246 6682 5.745227 ACCTGGTTGTCCTAATAATGTCTG 58.255 41.667 0.00 0.00 34.23 3.51
2514 6950 3.500680 GGTTTGTCATAAACAGAAGGCGA 59.499 43.478 0.00 0.00 39.58 5.54
2591 7029 1.694150 ACTAGCAAGCAGGAAGTGTGA 59.306 47.619 0.00 0.00 0.00 3.58
2592 7030 2.289320 ACTAGCAAGCAGGAAGTGTGAG 60.289 50.000 0.00 0.00 0.00 3.51
2633 7071 2.813754 TGCACTGGCTTTAGACATTGTC 59.186 45.455 8.82 8.82 41.91 3.18
2646 7084 3.649981 AGACATTGTCTGGATATCCTGGG 59.350 47.826 23.98 13.97 41.76 4.45
2699 7137 9.995003 AGATCAATTAGGAGTAGATAAGCAAAG 57.005 33.333 0.00 0.00 0.00 2.77
3160 7678 6.971184 CCTCTCTTTTTGCTAAGCATGTATTG 59.029 38.462 0.00 0.00 38.76 1.90
3177 7695 9.495754 GCATGTATTGAAGTATCTTGTTTCTTC 57.504 33.333 0.00 0.00 37.42 2.87
3302 7820 5.347342 CAACTGTTGTGGAGCAATTGTTTA 58.653 37.500 12.30 0.00 39.55 2.01
3314 7832 7.229306 TGGAGCAATTGTTTATAGATGATGTCC 59.771 37.037 7.40 0.00 0.00 4.02
3610 8147 7.881775 GGTCAGATACCCATTCAATTTTACT 57.118 36.000 0.00 0.00 43.16 2.24
3611 8148 7.931275 GGTCAGATACCCATTCAATTTTACTC 58.069 38.462 0.00 0.00 43.16 2.59
3612 8149 7.013369 GGTCAGATACCCATTCAATTTTACTCC 59.987 40.741 0.00 0.00 43.16 3.85
3613 8150 7.013369 GTCAGATACCCATTCAATTTTACTCCC 59.987 40.741 0.00 0.00 0.00 4.30
3614 8151 7.062957 CAGATACCCATTCAATTTTACTCCCT 58.937 38.462 0.00 0.00 0.00 4.20
3615 8152 7.229506 CAGATACCCATTCAATTTTACTCCCTC 59.770 40.741 0.00 0.00 0.00 4.30
3616 8153 4.610333 ACCCATTCAATTTTACTCCCTCC 58.390 43.478 0.00 0.00 0.00 4.30
3617 8154 3.632145 CCCATTCAATTTTACTCCCTCCG 59.368 47.826 0.00 0.00 0.00 4.63
3618 8155 4.270008 CCATTCAATTTTACTCCCTCCGT 58.730 43.478 0.00 0.00 0.00 4.69
3619 8156 4.335594 CCATTCAATTTTACTCCCTCCGTC 59.664 45.833 0.00 0.00 0.00 4.79
3620 8157 3.622166 TCAATTTTACTCCCTCCGTCC 57.378 47.619 0.00 0.00 0.00 4.79
3621 8158 2.093869 TCAATTTTACTCCCTCCGTCCG 60.094 50.000 0.00 0.00 0.00 4.79
3622 8159 0.828677 ATTTTACTCCCTCCGTCCGG 59.171 55.000 0.00 0.00 0.00 5.14
3623 8160 0.251742 TTTTACTCCCTCCGTCCGGA 60.252 55.000 0.00 0.00 42.90 5.14
3624 8161 0.251742 TTTACTCCCTCCGTCCGGAA 60.252 55.000 5.23 0.00 44.66 4.30
3625 8162 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
3626 8163 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3627 8164 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3628 8165 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3629 8166 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3630 8167 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3631 8168 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3632 8169 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3633 8170 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3634 8171 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3635 8172 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3636 8173 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3637 8174 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3638 8175 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3639 8176 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3640 8177 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3641 8178 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3642 8179 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3643 8180 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
3644 8181 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
3645 8182 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
3716 8253 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
3717 8254 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
3718 8255 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
3719 8256 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
3720 8257 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
3721 8258 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
3722 8259 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3723 8260 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3724 8261 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3725 8262 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3726 8263 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3727 8264 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3728 8265 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3729 8266 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3730 8267 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3731 8268 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3810 8350 5.592282 TGTTACATGCATACCTACATTTGGG 59.408 40.000 0.00 0.00 0.00 4.12
3867 8407 6.867816 GTGGATGAAAATGCTTGAACATACAA 59.132 34.615 0.00 0.00 31.77 2.41
4049 8622 7.445121 TGTTCTGAGTTGTAGACAATGAGAAT 58.555 34.615 12.81 0.00 38.24 2.40
4110 8691 3.535280 TGACTTGTGTTGCTGTCTGTA 57.465 42.857 0.00 0.00 0.00 2.74
4111 8692 3.867857 TGACTTGTGTTGCTGTCTGTAA 58.132 40.909 0.00 0.00 0.00 2.41
4153 8735 6.210784 CCCCGAGATAGTTGGAATGAGTATTA 59.789 42.308 0.00 0.00 0.00 0.98
4270 8881 4.836825 TCAAGCTCTTTTACCTGATGAGG 58.163 43.478 0.00 0.00 46.21 3.86
4369 10656 2.497107 ATGCAACTTGTTGTGACTGC 57.503 45.000 13.97 1.34 0.00 4.40
4370 10657 0.098552 TGCAACTTGTTGTGACTGCG 59.901 50.000 13.97 0.00 32.45 5.18
4371 10658 0.098728 GCAACTTGTTGTGACTGCGT 59.901 50.000 13.97 0.00 0.00 5.24
4372 10659 1.329292 GCAACTTGTTGTGACTGCGTA 59.671 47.619 13.97 0.00 0.00 4.42
4373 10660 2.032030 GCAACTTGTTGTGACTGCGTAT 60.032 45.455 13.97 0.00 0.00 3.06
4374 10661 3.548014 GCAACTTGTTGTGACTGCGTATT 60.548 43.478 13.97 0.00 0.00 1.89
4375 10662 3.878086 ACTTGTTGTGACTGCGTATTG 57.122 42.857 0.00 0.00 0.00 1.90
4376 10663 3.202906 ACTTGTTGTGACTGCGTATTGT 58.797 40.909 0.00 0.00 0.00 2.71
4377 10664 4.373527 ACTTGTTGTGACTGCGTATTGTA 58.626 39.130 0.00 0.00 0.00 2.41
4378 10665 4.210537 ACTTGTTGTGACTGCGTATTGTAC 59.789 41.667 0.00 0.00 0.00 2.90
4379 10666 3.985008 TGTTGTGACTGCGTATTGTACT 58.015 40.909 0.00 0.00 0.00 2.73
4380 10667 3.738791 TGTTGTGACTGCGTATTGTACTG 59.261 43.478 0.00 0.00 0.00 2.74
4381 10668 3.926821 TGTGACTGCGTATTGTACTGA 57.073 42.857 0.00 0.00 0.00 3.41
4382 10669 4.245845 TGTGACTGCGTATTGTACTGAA 57.754 40.909 0.00 0.00 0.00 3.02
4383 10670 4.816392 TGTGACTGCGTATTGTACTGAAT 58.184 39.130 0.00 0.00 0.00 2.57
4384 10671 5.234752 TGTGACTGCGTATTGTACTGAATT 58.765 37.500 0.00 0.00 0.00 2.17
4385 10672 5.347635 TGTGACTGCGTATTGTACTGAATTC 59.652 40.000 0.00 0.00 0.00 2.17
4386 10673 4.561213 TGACTGCGTATTGTACTGAATTCG 59.439 41.667 0.04 0.00 31.47 3.34
4387 10674 4.491676 ACTGCGTATTGTACTGAATTCGT 58.508 39.130 0.04 4.72 31.10 3.85
4388 10675 5.643664 ACTGCGTATTGTACTGAATTCGTA 58.356 37.500 0.04 3.77 31.10 3.43
4389 10676 6.270815 ACTGCGTATTGTACTGAATTCGTAT 58.729 36.000 11.47 0.00 31.10 3.06
4390 10677 7.420002 ACTGCGTATTGTACTGAATTCGTATA 58.580 34.615 11.47 7.68 31.10 1.47
4391 10678 8.080417 ACTGCGTATTGTACTGAATTCGTATAT 58.920 33.333 11.47 10.66 31.10 0.86
4392 10679 8.222984 TGCGTATTGTACTGAATTCGTATATG 57.777 34.615 11.47 8.70 31.10 1.78
4393 10680 7.148869 TGCGTATTGTACTGAATTCGTATATGC 60.149 37.037 17.57 17.57 31.10 3.14
4394 10681 7.148869 GCGTATTGTACTGAATTCGTATATGCA 60.149 37.037 18.46 0.00 31.10 3.96
4395 10682 8.696175 CGTATTGTACTGAATTCGTATATGCAA 58.304 33.333 11.47 10.93 0.00 4.08
4396 10683 9.793245 GTATTGTACTGAATTCGTATATGCAAC 57.207 33.333 11.47 0.00 0.00 4.17
4397 10684 8.662781 ATTGTACTGAATTCGTATATGCAACT 57.337 30.769 11.47 0.00 0.00 3.16
4398 10685 8.487313 TTGTACTGAATTCGTATATGCAACTT 57.513 30.769 11.47 0.00 0.00 2.66
4399 10686 7.905126 TGTACTGAATTCGTATATGCAACTTG 58.095 34.615 11.47 0.00 0.00 3.16
4400 10687 6.985188 ACTGAATTCGTATATGCAACTTGT 57.015 33.333 0.04 0.00 0.00 3.16
4401 10688 7.377766 ACTGAATTCGTATATGCAACTTGTT 57.622 32.000 0.04 0.00 0.00 2.83
4402 10689 7.243487 ACTGAATTCGTATATGCAACTTGTTG 58.757 34.615 8.95 8.95 0.00 3.33
4403 10690 7.094805 ACTGAATTCGTATATGCAACTTGTTGT 60.095 33.333 13.97 0.00 0.00 3.32
4404 10691 7.020602 TGAATTCGTATATGCAACTTGTTGTG 58.979 34.615 13.97 0.00 0.00 3.33
4405 10692 6.735678 ATTCGTATATGCAACTTGTTGTGA 57.264 33.333 13.97 3.28 0.00 3.58
4406 10693 5.524511 TCGTATATGCAACTTGTTGTGAC 57.475 39.130 13.97 5.69 0.00 3.67
4407 10694 5.234752 TCGTATATGCAACTTGTTGTGACT 58.765 37.500 13.97 2.03 0.00 3.41
4408 10695 5.120053 TCGTATATGCAACTTGTTGTGACTG 59.880 40.000 13.97 1.30 0.00 3.51
4627 10925 2.618241 TGTGTTTGCCTGCTTAACTCTG 59.382 45.455 8.42 0.00 0.00 3.35
4714 11134 4.340950 TGTTTCATCTTCCCAAACACTTCC 59.659 41.667 0.00 0.00 35.57 3.46
4856 11278 7.880195 TCTTCTGTGAAAATTCTTCTCTTAGGG 59.120 37.037 0.00 0.00 0.00 3.53
4974 11397 4.938226 CAGAGGTCTTATGGTCTTTGAACC 59.062 45.833 0.00 0.00 39.94 3.62
5024 11889 8.792633 ACAATAACTTTTATAGCAGTGAAAGCA 58.207 29.630 0.00 0.00 33.53 3.91
5186 12062 8.076910 TCCATCCTTTATATTTGCATGTGTTT 57.923 30.769 0.00 0.00 0.00 2.83
5204 12080 7.972623 TGTGTTTAACTGTTTGGTTATTTCG 57.027 32.000 0.00 0.00 32.64 3.46
5304 12180 0.888619 GCCCTTGCTTAAACTGGGTC 59.111 55.000 0.00 0.00 39.97 4.46
5310 12186 5.280317 CCCTTGCTTAAACTGGGTCTAGTTA 60.280 44.000 0.27 0.00 39.86 2.24
5402 12281 4.766404 ACTAACTTGAAATTCGGCAAGG 57.234 40.909 15.65 5.40 44.33 3.61
5487 12370 5.834204 GGAAGCTTCTTCTATGTACTCCCTA 59.166 44.000 25.05 0.00 0.00 3.53
5575 12462 6.627243 AGAAAAGCGTTTGACCTTAAAACTT 58.373 32.000 1.24 0.00 35.75 2.66
5674 12644 3.117512 CCTAAGGGCCTGTTTGGATATGT 60.118 47.826 6.92 0.00 38.35 2.29
5675 12645 2.442236 AGGGCCTGTTTGGATATGTG 57.558 50.000 4.50 0.00 38.35 3.21
5676 12646 1.063717 AGGGCCTGTTTGGATATGTGG 60.064 52.381 4.50 0.00 38.35 4.17
5677 12647 1.341976 GGGCCTGTTTGGATATGTGGT 60.342 52.381 0.84 0.00 38.35 4.16
5678 12648 2.092103 GGGCCTGTTTGGATATGTGGTA 60.092 50.000 0.84 0.00 38.35 3.25
5679 12649 3.436470 GGGCCTGTTTGGATATGTGGTAT 60.436 47.826 0.84 0.00 38.35 2.73
5680 12650 4.215109 GGCCTGTTTGGATATGTGGTATT 58.785 43.478 0.00 0.00 38.35 1.89
5681 12651 4.649218 GGCCTGTTTGGATATGTGGTATTT 59.351 41.667 0.00 0.00 38.35 1.40
5805 12775 7.436970 GTCCCGTTTAAAGTCATTGTTTCAAAT 59.563 33.333 0.00 0.00 0.00 2.32
5889 12860 6.325286 GGTCCTTAACCTATCTTCTGAGATGT 59.675 42.308 0.00 0.00 45.45 3.06
5905 12876 3.989817 GAGATGTGGCCATTTGTTGTTTC 59.010 43.478 9.72 0.00 0.00 2.78
5932 12903 9.903682 CCAATAATATGGTCTGAGCATTTTAAG 57.096 33.333 25.29 20.65 37.51 1.85
6098 13073 4.864806 CGTTTCAGATCGGATTCTCTTGAA 59.135 41.667 0.00 0.00 36.54 2.69
6168 13143 3.272574 AGGCAATGACATCGAATGACT 57.727 42.857 0.00 0.00 0.00 3.41
6235 13211 0.607489 GAGGTGAGCATGTTGCCACT 60.607 55.000 15.63 3.09 46.52 4.00
6328 13308 0.111639 TTGTTGCCTCCTTGGTACCC 59.888 55.000 10.07 0.00 38.35 3.69
6378 13358 1.388547 AACAAGCAAGCTGTTCCGAA 58.611 45.000 0.00 0.00 0.00 4.30
6447 13429 1.826385 AACATTCCTTGCCTCTTCCG 58.174 50.000 0.00 0.00 0.00 4.30
6499 13481 3.833559 AATTCTTGTGATTCCCCACCT 57.166 42.857 0.00 0.00 36.26 4.00
6528 13510 3.181461 CCTCAATGGTGACCTAGGATGTC 60.181 52.174 17.98 2.94 0.00 3.06
6839 13823 9.403110 CCAGTCTTTCAATTGTTTCAGATTTAG 57.597 33.333 5.13 0.00 0.00 1.85
6850 13834 3.973206 TCAGATTTAGCGTTCCTGGAA 57.027 42.857 4.68 4.68 0.00 3.53
6922 13906 4.551702 TGCACTTTGGAGTATCTTAGCA 57.448 40.909 0.00 0.00 33.90 3.49
6955 13939 3.876914 CACAAGTGCAAGGAACTGAGTTA 59.123 43.478 0.00 0.00 40.86 2.24
7368 14365 1.064825 AACCGGAAACTCCACTCCAT 58.935 50.000 9.46 0.00 35.91 3.41
7413 14411 0.601046 CAACGCTGCTGACCTGAGAA 60.601 55.000 0.00 0.00 0.00 2.87
7456 14455 1.702957 TGATTTTGGAACCGGGAGTCT 59.297 47.619 6.32 0.00 0.00 3.24
7473 14953 5.655532 GGGAGTCTGTTATAACCTACTGTCA 59.344 44.000 19.23 0.00 0.00 3.58
7573 15144 0.033601 GGGCATGGGTGGTGATACAA 60.034 55.000 0.00 0.00 0.00 2.41
7713 15663 6.379133 ACATAGATGCAGATGTGGTTTTCATT 59.621 34.615 10.06 0.00 34.98 2.57
7714 15664 5.733620 AGATGCAGATGTGGTTTTCATTT 57.266 34.783 0.00 0.00 0.00 2.32
7739 15689 3.380004 ACGTTTGAATGCCAGTTTTCTCA 59.620 39.130 0.00 0.00 0.00 3.27
7749 15699 6.707440 TGCCAGTTTTCTCATACTTTTTGA 57.293 33.333 0.00 0.00 0.00 2.69
7754 15815 9.346725 CCAGTTTTCTCATACTTTTTGATAAGC 57.653 33.333 0.00 0.00 0.00 3.09
7834 15895 0.752054 CCCAGCAGCTCTAGAGAAGG 59.248 60.000 24.24 14.87 0.00 3.46
7849 16171 9.267084 CTCTAGAGAAGGAATAATTAAACAGGC 57.733 37.037 15.05 0.00 0.00 4.85
7964 16310 6.927416 ACAAACGATGTAGTGTTATACTGGA 58.073 36.000 0.00 0.00 41.63 3.86
7979 16325 7.502895 TGTTATACTGGAGTAAAAAGTTTGGCA 59.497 33.333 0.00 0.00 33.76 4.92
8079 17370 8.399425 TCACACTTTTTCTACTCGCAAATTAAA 58.601 29.630 0.00 0.00 0.00 1.52
8081 17372 9.233232 ACACTTTTTCTACTCGCAAATTAAAAG 57.767 29.630 0.00 0.00 37.37 2.27
8134 17427 2.107950 TTTCTCCATTGTAGCCCGTG 57.892 50.000 0.00 0.00 0.00 4.94
8221 18153 4.452795 GGAAGTAGCACTGGTTTTTCTCTC 59.547 45.833 0.00 0.00 0.00 3.20
8226 18163 5.921962 AGCACTGGTTTTTCTCTCTTTTT 57.078 34.783 0.00 0.00 0.00 1.94
8264 18201 2.094338 GGTTTAGGTCGGTCAGGTGTAG 60.094 54.545 0.00 0.00 0.00 2.74
8332 18295 9.990360 TTAGGTTTTTGAGTTGGGATTAATTTC 57.010 29.630 0.00 0.00 0.00 2.17
8387 18351 7.336176 AGTTTTCGAGTTATTCATCCCCTAAAC 59.664 37.037 0.00 0.00 0.00 2.01
8401 18365 7.288389 TCATCCCCTAAACGTTATAGTATGTGT 59.712 37.037 0.00 0.00 0.00 3.72
8424 18399 1.669760 GGCAATGGTCGTTCGGTGA 60.670 57.895 0.00 0.00 0.00 4.02
8455 18430 9.621629 TGGACCTCGATGTAATTTATGTTTAAT 57.378 29.630 0.00 0.00 0.00 1.40
8562 18600 7.892778 TTAATTGTCACTCGTGCTACAATTA 57.107 32.000 21.04 21.04 41.78 1.40
8563 18601 6.985188 AATTGTCACTCGTGCTACAATTAT 57.015 33.333 19.64 5.90 41.78 1.28
8576 18614 7.803189 CGTGCTACAATTATGAAAGAAGTGTTT 59.197 33.333 0.00 0.00 36.57 2.83
8602 18640 1.218047 GCTCATGACAGCCCGTACA 59.782 57.895 0.00 0.00 32.76 2.90
8610 18648 3.068560 TGACAGCCCGTACAACAAATAC 58.931 45.455 0.00 0.00 0.00 1.89
8611 18649 2.417586 GACAGCCCGTACAACAAATACC 59.582 50.000 0.00 0.00 0.00 2.73
8661 18699 1.229428 AAGCCCGCATCGATTATGTG 58.771 50.000 0.00 0.00 44.29 3.21
8723 18762 0.039708 GCAGCAGCAAAGACAGGAAC 60.040 55.000 0.00 0.00 41.58 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.864034 CATACTACCAATTTGTTTACGATGATC 57.136 33.333 0.00 0.00 0.00 2.92
26 27 6.744082 GCGGTTCATACTACCAATTTGTTTAC 59.256 38.462 0.00 0.00 35.31 2.01
71 72 3.740044 TGTATTTCAAAGCTAGCGTGC 57.260 42.857 9.55 0.00 0.00 5.34
98 99 8.654997 AGTGAAGTGAATATAGCTATGGTCAAT 58.345 33.333 16.77 14.44 0.00 2.57
217 223 5.738619 ACCCCTTTTGTGATTATTTGGTC 57.261 39.130 0.00 0.00 0.00 4.02
254 260 6.759497 AATGGTTTGCAGAGTATTAAGTCC 57.241 37.500 0.00 0.00 0.00 3.85
332 338 9.628500 AAGTTAGGGCTAAATATTAGTCAAAGG 57.372 33.333 4.34 0.00 0.00 3.11
408 420 1.547675 CGGTAATATTGCTGGGCCCAT 60.548 52.381 28.82 13.82 0.00 4.00
413 425 0.179004 TGGCCGGTAATATTGCTGGG 60.179 55.000 26.90 17.66 39.43 4.45
416 428 2.021457 GTTGTGGCCGGTAATATTGCT 58.979 47.619 1.90 0.00 0.00 3.91
453 465 9.651913 CCAACATATTTGGCTTACTAATGTTTT 57.348 29.630 0.00 0.00 32.18 2.43
454 466 8.811994 ACCAACATATTTGGCTTACTAATGTTT 58.188 29.630 13.42 0.00 43.23 2.83
457 469 8.250332 ACAACCAACATATTTGGCTTACTAATG 58.750 33.333 13.42 0.00 43.23 1.90
497 509 5.897250 TCATCTACTAGCTGGTTATGGTTCA 59.103 40.000 8.46 0.00 0.00 3.18
564 580 9.250624 GTTCAAGCTATAAGTGTACTTCATAGG 57.749 37.037 0.00 0.00 37.40 2.57
574 590 4.911390 AGCCAAGTTCAAGCTATAAGTGT 58.089 39.130 0.00 0.00 34.38 3.55
577 593 6.372659 TCAAGAAGCCAAGTTCAAGCTATAAG 59.627 38.462 0.00 0.00 35.30 1.73
593 609 1.747924 GGCATCCTCTTTCAAGAAGCC 59.252 52.381 0.00 0.00 34.03 4.35
602 618 1.615384 GCACCTCTTGGCATCCTCTTT 60.615 52.381 0.00 0.00 36.63 2.52
638 655 1.669760 CGAAGCTTGCGTTGGGGTA 60.670 57.895 2.10 0.00 0.00 3.69
668 685 3.251571 GCCGAGTTACTTTCTTCGTGAT 58.748 45.455 0.00 0.00 0.00 3.06
671 688 1.337541 GGGCCGAGTTACTTTCTTCGT 60.338 52.381 0.00 0.00 0.00 3.85
672 689 1.337447 TGGGCCGAGTTACTTTCTTCG 60.337 52.381 0.00 0.00 0.00 3.79
675 692 3.105283 AGTATGGGCCGAGTTACTTTCT 58.895 45.455 0.00 0.00 0.00 2.52
855 2382 2.282180 GCTTTTCACAGGGCCGGA 60.282 61.111 11.67 0.33 0.00 5.14
1045 2717 2.492090 CTCGGGCGAGTCTTCCTG 59.508 66.667 0.00 1.75 37.47 3.86
1236 2941 0.565674 ATTCCTCCTCCTCCTCCTCC 59.434 60.000 0.00 0.00 0.00 4.30
1237 2942 1.715785 CATTCCTCCTCCTCCTCCTC 58.284 60.000 0.00 0.00 0.00 3.71
1238 2943 0.267356 CCATTCCTCCTCCTCCTCCT 59.733 60.000 0.00 0.00 0.00 3.69
1239 2944 0.766288 CCCATTCCTCCTCCTCCTCC 60.766 65.000 0.00 0.00 0.00 4.30
1240 2945 0.266152 TCCCATTCCTCCTCCTCCTC 59.734 60.000 0.00 0.00 0.00 3.71
1241 2946 0.030603 GTCCCATTCCTCCTCCTCCT 60.031 60.000 0.00 0.00 0.00 3.69
1242 2947 1.403687 CGTCCCATTCCTCCTCCTCC 61.404 65.000 0.00 0.00 0.00 4.30
1255 2960 4.075793 CTCCTCCTCCCCGTCCCA 62.076 72.222 0.00 0.00 0.00 4.37
1400 3167 1.644913 CGACGCAAAAACCCTCGTT 59.355 52.632 0.00 0.00 35.12 3.85
1422 3189 1.173913 GAGGGAAATGGAAACCACGG 58.826 55.000 0.00 0.00 35.80 4.94
1505 4922 0.373716 GGCACGGAATCGCTTAGTTG 59.626 55.000 0.00 0.00 40.63 3.16
1579 4996 3.664769 CATGGATGGAGGAGGGCA 58.335 61.111 0.00 0.00 0.00 5.36
1619 5036 0.394216 TGCAAGATGGATGTTCCCCG 60.394 55.000 0.00 0.00 35.03 5.73
1692 5113 3.278574 GGCATGTAAACATAGTGGCAGA 58.721 45.455 0.00 0.00 34.26 4.26
1739 5160 1.933500 GCTCCACAACAGCTGCAATTG 60.934 52.381 15.27 13.66 33.75 2.32
1830 5260 8.797350 AAACCCCAGTTGTAATAACTATGTAC 57.203 34.615 0.00 0.00 35.97 2.90
1851 5281 3.897325 GCAGTTGCTTGGTAAGTAAACC 58.103 45.455 0.00 0.00 34.88 3.27
1910 5354 5.729510 ACAAAGCAACTAAACACCAATTGT 58.270 33.333 4.43 0.00 41.74 2.71
1984 5441 6.064717 ACTATAATTCCAAGGGAGCATGTTC 58.935 40.000 0.04 0.04 31.21 3.18
2015 5472 8.352201 CCAGAAGATTGAACATTAAGACAACAA 58.648 33.333 0.00 0.00 0.00 2.83
2066 5688 2.623535 ACTGTAGTTGCGTTTGTGTCA 58.376 42.857 0.00 0.00 0.00 3.58
2213 6649 3.818773 AGGACAACCAGGTCGTTTTAATG 59.181 43.478 0.00 0.00 38.70 1.90
2246 6682 2.798976 TGTCACTTTTTGCATGAGGC 57.201 45.000 0.00 0.00 45.13 4.70
2360 6796 4.421131 ACTGATCCTTAGGACTGACACTT 58.579 43.478 1.74 0.00 32.98 3.16
2514 6950 6.977213 ACAAGTTTCATATAGCAAAACGGTT 58.023 32.000 0.00 0.00 37.82 4.44
2591 7029 5.889853 TGCAGATAAGGCAATCAAAATCTCT 59.110 36.000 3.17 0.00 38.54 3.10
2592 7030 5.975939 GTGCAGATAAGGCAATCAAAATCTC 59.024 40.000 0.00 0.00 43.91 2.75
2633 7071 6.765403 TCGTATTAAAACCCAGGATATCCAG 58.235 40.000 23.81 15.66 38.89 3.86
2646 7084 5.305139 AGCCAACCACATCGTATTAAAAC 57.695 39.130 0.00 0.00 0.00 2.43
2725 7163 8.329203 AGGAGCTACAAAACTAAAAGAATGAG 57.671 34.615 0.00 0.00 0.00 2.90
2770 7208 8.408601 CAAGTAGCTATCACCAGCAAAATTTAT 58.591 33.333 0.00 0.00 44.35 1.40
2774 7282 5.256474 ACAAGTAGCTATCACCAGCAAAAT 58.744 37.500 0.00 0.00 44.35 1.82
2776 7284 4.286297 ACAAGTAGCTATCACCAGCAAA 57.714 40.909 0.00 0.00 44.35 3.68
2911 7420 4.935702 TCCTTTGAACACTTGATTTGCTG 58.064 39.130 0.00 0.00 0.00 4.41
2970 7479 9.956558 TTACTAAGGTATAAAGGAAGGTGGATA 57.043 33.333 0.00 0.00 0.00 2.59
3050 7565 4.644234 TCCAAAAGCACTTCAATCACAAGA 59.356 37.500 0.00 0.00 0.00 3.02
3134 7649 3.760684 ACATGCTTAGCAAAAAGAGAGGG 59.239 43.478 12.08 0.00 43.62 4.30
3177 7695 1.470098 CCTGCAGGGACAAAAGATTCG 59.530 52.381 26.14 0.00 37.23 3.34
3286 7804 7.557358 ACATCATCTATAAACAATTGCTCCACA 59.443 33.333 5.05 0.00 0.00 4.17
3302 7820 5.768662 CAGAAAGGCATTGGACATCATCTAT 59.231 40.000 0.00 0.00 0.00 1.98
3366 7890 5.523438 AATAACTTTGAGTCCGGCAAAAA 57.477 34.783 0.00 0.00 35.09 1.94
3487 8012 8.915057 ACCAAGATCTATTTCACATGATAAGG 57.085 34.615 0.00 0.00 0.00 2.69
3610 8147 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3611 8148 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3612 8149 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3613 8150 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3614 8151 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3615 8152 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3616 8153 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3617 8154 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3618 8155 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
3619 8156 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
3620 8157 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
3690 8227 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
3691 8228 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
3692 8229 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
3693 8230 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
3694 8231 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
3695 8232 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
3696 8233 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3697 8234 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3698 8235 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3699 8236 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3700 8237 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3701 8238 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3702 8239 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3703 8240 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3704 8241 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3705 8242 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3706 8243 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3707 8244 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3708 8245 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3709 8246 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3710 8247 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3711 8248 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3712 8249 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3713 8250 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3714 8251 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
3715 8252 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3716 8253 0.967380 GGTACTCCCTCCGTCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
3717 8254 1.379044 GGTACTCCCTCCGTCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
3718 8255 2.273449 GGTACTCCCTCCGTCCGA 59.727 66.667 0.00 0.00 0.00 4.55
3719 8256 2.044650 TGGTACTCCCTCCGTCCG 60.045 66.667 0.00 0.00 0.00 4.79
3720 8257 0.686769 ATGTGGTACTCCCTCCGTCC 60.687 60.000 0.00 0.00 0.00 4.79
3721 8258 2.062971 TATGTGGTACTCCCTCCGTC 57.937 55.000 0.00 0.00 0.00 4.79
3722 8259 2.105766 GTTATGTGGTACTCCCTCCGT 58.894 52.381 0.00 0.00 0.00 4.69
3723 8260 2.385803 AGTTATGTGGTACTCCCTCCG 58.614 52.381 0.00 0.00 0.00 4.63
3724 8261 4.262506 GCATAGTTATGTGGTACTCCCTCC 60.263 50.000 0.00 0.00 36.11 4.30
3725 8262 4.344102 TGCATAGTTATGTGGTACTCCCTC 59.656 45.833 0.00 0.00 36.11 4.30
3726 8263 4.295201 TGCATAGTTATGTGGTACTCCCT 58.705 43.478 0.00 0.00 36.11 4.20
3727 8264 4.682778 TGCATAGTTATGTGGTACTCCC 57.317 45.455 0.00 0.00 36.11 4.30
3728 8265 6.513393 GCATTTGCATAGTTATGTGGTACTCC 60.513 42.308 0.00 0.00 41.59 3.85
3729 8266 6.430451 GCATTTGCATAGTTATGTGGTACTC 58.570 40.000 0.00 0.00 41.59 2.59
3730 8267 5.299279 GGCATTTGCATAGTTATGTGGTACT 59.701 40.000 4.74 0.00 44.36 2.73
3731 8268 5.507315 GGGCATTTGCATAGTTATGTGGTAC 60.507 44.000 4.74 0.00 44.36 3.34
3810 8350 5.590259 ACAACTAGTGATTGATTGGGTATGC 59.410 40.000 0.00 0.00 0.00 3.14
3828 8368 7.397892 TTTTCATCCACAACTTCAACAACTA 57.602 32.000 0.00 0.00 0.00 2.24
4049 8622 5.188555 ACAGAGCATAGATGGAACTTCTCAA 59.811 40.000 0.00 0.00 0.00 3.02
4153 8735 4.082571 GCACCACTGATGAAACTTAGCAAT 60.083 41.667 0.00 0.00 0.00 3.56
4161 8743 2.421424 GAGGATGCACCACTGATGAAAC 59.579 50.000 7.86 0.00 42.04 2.78
4270 8881 9.530633 AACTATCCATAGAATACGTGAAAGAAC 57.469 33.333 0.00 0.00 34.50 3.01
4369 10656 8.222984 TGCATATACGAATTCAGTACAATACG 57.777 34.615 6.22 0.00 0.00 3.06
4370 10657 9.793245 GTTGCATATACGAATTCAGTACAATAC 57.207 33.333 6.22 3.29 0.00 1.89
4371 10658 9.758651 AGTTGCATATACGAATTCAGTACAATA 57.241 29.630 6.22 1.22 0.00 1.90
4372 10659 8.662781 AGTTGCATATACGAATTCAGTACAAT 57.337 30.769 6.22 4.42 0.00 2.71
4373 10660 8.387354 CAAGTTGCATATACGAATTCAGTACAA 58.613 33.333 6.22 6.67 0.00 2.41
4374 10661 7.547722 ACAAGTTGCATATACGAATTCAGTACA 59.452 33.333 6.22 0.00 0.00 2.90
4375 10662 7.906160 ACAAGTTGCATATACGAATTCAGTAC 58.094 34.615 6.22 0.00 0.00 2.73
4376 10663 8.387354 CAACAAGTTGCATATACGAATTCAGTA 58.613 33.333 6.22 9.09 33.45 2.74
4377 10664 6.985188 ACAAGTTGCATATACGAATTCAGT 57.015 33.333 6.22 7.16 0.00 3.41
4378 10665 7.216881 CACAACAAGTTGCATATACGAATTCAG 59.783 37.037 12.54 1.11 44.03 3.02
4379 10666 7.020602 CACAACAAGTTGCATATACGAATTCA 58.979 34.615 12.54 0.00 44.03 2.57
4380 10667 7.216317 GTCACAACAAGTTGCATATACGAATTC 59.784 37.037 12.54 0.00 44.03 2.17
4381 10668 7.021196 GTCACAACAAGTTGCATATACGAATT 58.979 34.615 12.54 0.00 44.03 2.17
4382 10669 6.371548 AGTCACAACAAGTTGCATATACGAAT 59.628 34.615 12.54 0.00 44.03 3.34
4383 10670 5.699001 AGTCACAACAAGTTGCATATACGAA 59.301 36.000 12.54 0.00 44.03 3.85
4384 10671 5.120053 CAGTCACAACAAGTTGCATATACGA 59.880 40.000 12.54 0.00 44.03 3.43
4385 10672 5.315982 CAGTCACAACAAGTTGCATATACG 58.684 41.667 12.54 0.00 44.03 3.06
4386 10673 5.088739 GCAGTCACAACAAGTTGCATATAC 58.911 41.667 12.54 4.72 44.03 1.47
4387 10674 4.142924 CGCAGTCACAACAAGTTGCATATA 60.143 41.667 12.54 0.00 44.03 0.86
4388 10675 3.365264 CGCAGTCACAACAAGTTGCATAT 60.365 43.478 12.54 0.00 44.03 1.78
4389 10676 2.032117 CGCAGTCACAACAAGTTGCATA 60.032 45.455 12.54 0.00 44.03 3.14
4390 10677 1.268692 CGCAGTCACAACAAGTTGCAT 60.269 47.619 12.54 0.00 44.03 3.96
4391 10678 0.098552 CGCAGTCACAACAAGTTGCA 59.901 50.000 12.54 0.00 44.03 4.08
4392 10679 0.098728 ACGCAGTCACAACAAGTTGC 59.901 50.000 12.54 0.00 39.87 4.17
4393 10680 3.878086 ATACGCAGTCACAACAAGTTG 57.122 42.857 11.16 11.16 43.93 3.16
4394 10681 3.625764 ACAATACGCAGTCACAACAAGTT 59.374 39.130 0.00 0.00 43.93 2.66
4395 10682 3.202906 ACAATACGCAGTCACAACAAGT 58.797 40.909 0.00 0.00 43.93 3.16
4396 10683 3.878086 ACAATACGCAGTCACAACAAG 57.122 42.857 0.00 0.00 43.93 3.16
4397 10684 4.210328 CAGTACAATACGCAGTCACAACAA 59.790 41.667 0.00 0.00 43.93 2.83
4398 10685 3.738791 CAGTACAATACGCAGTCACAACA 59.261 43.478 0.00 0.00 43.93 3.33
4399 10686 3.985279 TCAGTACAATACGCAGTCACAAC 59.015 43.478 0.00 0.00 43.93 3.32
4400 10687 4.245845 TCAGTACAATACGCAGTCACAA 57.754 40.909 0.00 0.00 43.93 3.33
4401 10688 3.926821 TCAGTACAATACGCAGTCACA 57.073 42.857 0.00 0.00 43.93 3.58
4402 10689 5.498700 CGAATTCAGTACAATACGCAGTCAC 60.499 44.000 6.22 0.00 43.93 3.67
4403 10690 4.561213 CGAATTCAGTACAATACGCAGTCA 59.439 41.667 6.22 0.00 43.93 3.41
4404 10691 4.561606 ACGAATTCAGTACAATACGCAGTC 59.438 41.667 6.22 0.00 43.93 3.51
4406 10693 6.749216 ATACGAATTCAGTACAATACGCAG 57.251 37.500 6.22 0.00 0.00 5.18
4407 10694 7.148869 GCATATACGAATTCAGTACAATACGCA 60.149 37.037 6.22 0.00 0.00 5.24
4408 10695 7.148869 TGCATATACGAATTCAGTACAATACGC 60.149 37.037 6.22 5.02 0.00 4.42
4595 10888 2.791383 GCAAACACACATGCCTAACA 57.209 45.000 0.00 0.00 36.56 2.41
4627 10925 6.183361 ACCTCAGGATATGGTGAACTGATAAC 60.183 42.308 0.00 0.00 37.53 1.89
4714 11134 7.093902 TGAGTAAGACTGGACCATACAACTAAG 60.094 40.741 0.00 0.00 0.00 2.18
4809 11231 0.325602 AACCAAGCAATTGCCATGGG 59.674 50.000 36.71 28.82 46.65 4.00
4876 11299 3.976169 TCAACTGTTACCAAAATGCAGC 58.024 40.909 0.00 0.00 0.00 5.25
5058 11923 4.679373 ACAACACATAACAATGGGCAAA 57.321 36.364 0.00 0.00 0.00 3.68
5064 11929 7.471721 ACCGAATCATACAACACATAACAATG 58.528 34.615 0.00 0.00 0.00 2.82
5186 12062 8.604640 TCACATACGAAATAACCAAACAGTTA 57.395 30.769 0.00 0.00 36.68 2.24
5204 12080 6.316140 TGATCTGCAACCAGTAATTCACATAC 59.684 38.462 0.00 0.00 40.09 2.39
5304 12180 7.099120 AGTAACCCAATAACACGGTTAACTAG 58.901 38.462 5.42 2.96 42.30 2.57
5310 12186 5.619220 TGTTAGTAACCCAATAACACGGTT 58.381 37.500 10.51 0.00 42.49 4.44
5352 12228 1.269517 CCTGTCTAGCTTCTCATCCGC 60.270 57.143 0.00 0.00 0.00 5.54
5487 12370 5.743636 ATACACCTTGCATTTTGGAATGT 57.256 34.783 0.00 0.00 43.67 2.71
5586 12473 8.960064 ACCAAATACTCCCTCCAATCTATAATT 58.040 33.333 0.00 0.00 0.00 1.40
5590 12477 7.947782 TTACCAAATACTCCCTCCAATCTAT 57.052 36.000 0.00 0.00 0.00 1.98
5674 12644 6.126507 TGCCATAAATCTCCAGAGAAATACCA 60.127 38.462 0.66 0.00 41.36 3.25
5675 12645 6.299141 TGCCATAAATCTCCAGAGAAATACC 58.701 40.000 0.66 0.00 41.36 2.73
5676 12646 7.992754 ATGCCATAAATCTCCAGAGAAATAC 57.007 36.000 0.66 0.00 41.36 1.89
5677 12647 8.219868 TGAATGCCATAAATCTCCAGAGAAATA 58.780 33.333 0.66 0.00 41.36 1.40
5678 12648 7.064866 TGAATGCCATAAATCTCCAGAGAAAT 58.935 34.615 0.66 0.00 41.36 2.17
5679 12649 6.425735 TGAATGCCATAAATCTCCAGAGAAA 58.574 36.000 0.66 0.00 41.36 2.52
5680 12650 6.005066 TGAATGCCATAAATCTCCAGAGAA 57.995 37.500 0.66 0.00 41.36 2.87
5681 12651 5.131642 ACTGAATGCCATAAATCTCCAGAGA 59.868 40.000 0.00 0.00 42.37 3.10
5876 12847 3.947612 AATGGCCACATCTCAGAAGAT 57.052 42.857 8.16 0.00 43.24 2.40
5889 12860 1.500474 TGGGAAACAACAAATGGCCA 58.500 45.000 8.56 8.56 0.00 5.36
5905 12876 6.906157 AAATGCTCAGACCATATTATTGGG 57.094 37.500 0.00 0.00 41.35 4.12
5932 12903 6.473758 ACTAGGAAGTGGGAATGTAAGAAAC 58.526 40.000 0.00 0.00 33.57 2.78
6098 13073 6.070951 TCTTCCATGAAGTGAAGGATCAAT 57.929 37.500 8.88 0.00 40.24 2.57
6200 13175 3.197766 TCACCTCAACTTTATCAGGCGAT 59.802 43.478 0.00 0.00 35.50 4.58
6328 13308 5.437289 TGAGTTGGTCAAGCTAACAATTG 57.563 39.130 3.24 3.24 40.49 2.32
6528 13510 8.249638 TCTGAATCTACAGATCTTTCAAGTGAG 58.750 37.037 7.90 0.00 41.21 3.51
6746 13730 5.739752 CAGTGCACTGCTTAGCAAATATA 57.260 39.130 32.39 0.00 43.20 0.86
6747 13731 4.627611 CAGTGCACTGCTTAGCAAATAT 57.372 40.909 32.39 0.00 43.20 1.28
6839 13823 1.449778 GTAGGCCTTCCAGGAACGC 60.450 63.158 12.58 13.37 37.67 4.84
6850 13834 2.979678 TGGAAGAACTTCAAGTAGGCCT 59.020 45.455 11.78 11.78 41.20 5.19
6922 13906 1.156736 GCACTTGTGCCAGAATACGT 58.843 50.000 14.17 0.00 0.00 3.57
6955 13939 4.837085 TCGAGGGACGAGGAGTTT 57.163 55.556 0.00 0.00 46.45 2.66
7368 14365 1.383456 AACCGCAGCAAGCTTGTCAA 61.383 50.000 26.55 0.00 42.61 3.18
7413 14411 2.887360 GCCACATGCCGCATTCTT 59.113 55.556 2.16 0.00 0.00 2.52
7473 14953 5.985911 ACAGGTTGCCGTATAGTCTAAAAT 58.014 37.500 0.00 0.00 0.00 1.82
7483 14963 5.163794 CGATTTTCTTTACAGGTTGCCGTAT 60.164 40.000 0.00 0.00 0.00 3.06
7484 14964 4.152759 CGATTTTCTTTACAGGTTGCCGTA 59.847 41.667 0.00 0.00 0.00 4.02
7591 15537 4.092821 CGACTTATCAAACTTGGCAATCGA 59.907 41.667 0.00 0.00 0.00 3.59
7713 15663 5.298276 AGAAAACTGGCATTCAAACGTAGAA 59.702 36.000 5.91 5.91 0.00 2.10
7714 15664 4.819630 AGAAAACTGGCATTCAAACGTAGA 59.180 37.500 2.49 0.00 0.00 2.59
7749 15699 8.443176 TCATGGGAAATTCATTCTCTAGCTTAT 58.557 33.333 0.00 0.00 39.44 1.73
7754 15815 6.512415 GCGTTCATGGGAAATTCATTCTCTAG 60.512 42.308 0.00 0.00 39.44 2.43
7834 15895 7.555965 ACCCAAAGATGCCTGTTTAATTATTC 58.444 34.615 0.00 0.00 0.00 1.75
7849 16171 1.457346 GCACTGGAGACCCAAAGATG 58.543 55.000 0.00 0.00 42.98 2.90
7913 16259 7.846066 TCCAAAAAGTCTCAGGAAATTTTTGA 58.154 30.769 17.81 0.00 43.64 2.69
7925 16271 5.630661 TCGTTTGTTTCCAAAAAGTCTCA 57.369 34.783 0.00 0.00 41.99 3.27
7927 16273 5.961272 ACATCGTTTGTTTCCAAAAAGTCT 58.039 33.333 0.00 0.00 41.99 3.24
7928 16274 6.970613 ACTACATCGTTTGTTTCCAAAAAGTC 59.029 34.615 0.00 0.00 41.99 3.01
7945 16291 9.577110 TTTTTACTCCAGTATAACACTACATCG 57.423 33.333 0.00 0.00 34.98 3.84
7964 16310 8.040727 AGTCATTTCTTTGCCAAACTTTTTACT 58.959 29.630 0.00 0.00 0.00 2.24
7975 16321 4.344679 ACCATGAAAGTCATTTCTTTGCCA 59.655 37.500 0.00 0.00 44.35 4.92
7979 16325 9.492973 CCAAAATACCATGAAAGTCATTTCTTT 57.507 29.630 0.00 0.00 44.35 2.52
8064 17355 7.253321 GGCGATTTTCTTTTAATTTGCGAGTAG 60.253 37.037 0.00 0.00 0.00 2.57
8079 17370 5.070685 AGTTAACTTCAGGGCGATTTTCTT 58.929 37.500 1.12 0.00 0.00 2.52
8081 17372 6.315393 TCATAGTTAACTTCAGGGCGATTTTC 59.685 38.462 14.49 0.00 0.00 2.29
8083 17374 5.741011 TCATAGTTAACTTCAGGGCGATTT 58.259 37.500 14.49 0.00 0.00 2.17
8084 17375 5.353394 TCATAGTTAACTTCAGGGCGATT 57.647 39.130 14.49 0.00 0.00 3.34
8085 17376 5.353394 TTCATAGTTAACTTCAGGGCGAT 57.647 39.130 14.49 0.00 0.00 4.58
8087 17378 6.436843 AAATTCATAGTTAACTTCAGGGCG 57.563 37.500 14.49 0.00 0.00 6.13
8134 17427 4.590850 AAAACTGAACCTTTCTGCCATC 57.409 40.909 0.00 0.00 32.51 3.51
8226 18163 9.373603 GACCTAAACCTTTGCTTTTTCTAAAAA 57.626 29.630 1.05 1.05 36.53 1.94
8227 18164 7.703197 CGACCTAAACCTTTGCTTTTTCTAAAA 59.297 33.333 0.00 0.00 0.00 1.52
8228 18165 7.197703 CGACCTAAACCTTTGCTTTTTCTAAA 58.802 34.615 0.00 0.00 0.00 1.85
8229 18166 6.238814 CCGACCTAAACCTTTGCTTTTTCTAA 60.239 38.462 0.00 0.00 0.00 2.10
8230 18167 5.239963 CCGACCTAAACCTTTGCTTTTTCTA 59.760 40.000 0.00 0.00 0.00 2.10
8232 18169 4.202080 ACCGACCTAAACCTTTGCTTTTTC 60.202 41.667 0.00 0.00 0.00 2.29
8234 18171 3.293337 ACCGACCTAAACCTTTGCTTTT 58.707 40.909 0.00 0.00 0.00 2.27
8235 18172 2.882761 GACCGACCTAAACCTTTGCTTT 59.117 45.455 0.00 0.00 0.00 3.51
8237 18174 1.418637 TGACCGACCTAAACCTTTGCT 59.581 47.619 0.00 0.00 0.00 3.91
8238 18175 1.804748 CTGACCGACCTAAACCTTTGC 59.195 52.381 0.00 0.00 0.00 3.68
8239 18176 2.224450 ACCTGACCGACCTAAACCTTTG 60.224 50.000 0.00 0.00 0.00 2.77
8240 18177 2.052468 ACCTGACCGACCTAAACCTTT 58.948 47.619 0.00 0.00 0.00 3.11
8332 18295 6.086222 CAGGAACGTGATGATTTAAACTTGG 58.914 40.000 0.00 0.00 0.00 3.61
8387 18351 2.313234 CCGCCGACACATACTATAACG 58.687 52.381 0.00 0.00 0.00 3.18
8401 18365 4.690719 AACGACCATTGCCGCCGA 62.691 61.111 0.00 0.00 0.00 5.54
8424 18399 4.982241 AATTACATCGAGGTCCATGGAT 57.018 40.909 19.62 1.68 0.00 3.41
8508 18484 6.350445 GGTCGGAGGAGTACATACTGTAAAAA 60.350 42.308 0.00 0.00 34.21 1.94
8509 18485 5.126061 GGTCGGAGGAGTACATACTGTAAAA 59.874 44.000 0.00 0.00 34.21 1.52
8510 18486 4.641989 GGTCGGAGGAGTACATACTGTAAA 59.358 45.833 0.00 0.00 34.21 2.01
8511 18487 4.080129 AGGTCGGAGGAGTACATACTGTAA 60.080 45.833 0.00 0.00 34.21 2.41
8512 18488 3.457380 AGGTCGGAGGAGTACATACTGTA 59.543 47.826 0.00 0.00 36.50 2.74
8514 18490 2.933573 AGGTCGGAGGAGTACATACTG 58.066 52.381 0.00 0.00 36.50 2.74
8515 18491 4.997545 ATAGGTCGGAGGAGTACATACT 57.002 45.455 0.00 0.00 39.71 2.12
8516 18492 8.798859 TTAATATAGGTCGGAGGAGTACATAC 57.201 38.462 0.00 0.00 0.00 2.39
8520 18496 8.120140 ACAATTAATATAGGTCGGAGGAGTAC 57.880 38.462 0.00 0.00 0.00 2.73
8521 18497 7.946219 TGACAATTAATATAGGTCGGAGGAGTA 59.054 37.037 0.00 0.00 0.00 2.59
8522 18498 6.781014 TGACAATTAATATAGGTCGGAGGAGT 59.219 38.462 0.00 0.00 0.00 3.85
8523 18499 7.039644 AGTGACAATTAATATAGGTCGGAGGAG 60.040 40.741 0.00 0.00 0.00 3.69
8525 18501 6.994221 AGTGACAATTAATATAGGTCGGAGG 58.006 40.000 0.00 0.00 0.00 4.30
8526 18502 6.802348 CGAGTGACAATTAATATAGGTCGGAG 59.198 42.308 0.00 0.00 0.00 4.63
8527 18503 6.263842 ACGAGTGACAATTAATATAGGTCGGA 59.736 38.462 0.00 0.00 0.00 4.55
8528 18504 6.362551 CACGAGTGACAATTAATATAGGTCGG 59.637 42.308 0.00 0.00 0.00 4.79
8529 18505 6.129168 GCACGAGTGACAATTAATATAGGTCG 60.129 42.308 7.50 0.00 0.00 4.79
8530 18506 6.924060 AGCACGAGTGACAATTAATATAGGTC 59.076 38.462 7.50 0.00 0.00 3.85
8531 18507 6.817184 AGCACGAGTGACAATTAATATAGGT 58.183 36.000 7.50 0.00 0.00 3.08
8532 18508 7.865889 TGTAGCACGAGTGACAATTAATATAGG 59.134 37.037 7.50 0.00 0.00 2.57
8533 18509 8.797266 TGTAGCACGAGTGACAATTAATATAG 57.203 34.615 7.50 0.00 0.00 1.31
8592 18630 1.395608 CGGTATTTGTTGTACGGGCTG 59.604 52.381 0.00 0.00 0.00 4.85
8602 18640 1.203075 TGAAAGGCCCCGGTATTTGTT 60.203 47.619 0.00 0.00 0.00 2.83
8661 18699 2.282783 AAATGGTTGGAAGGGCCGC 61.283 57.895 0.00 0.00 40.66 6.53
8709 18748 0.465460 TTGCGGTTCCTGTCTTTGCT 60.465 50.000 0.00 0.00 0.00 3.91
8710 18749 0.317854 GTTGCGGTTCCTGTCTTTGC 60.318 55.000 0.00 0.00 0.00 3.68
8711 18750 0.310854 GGTTGCGGTTCCTGTCTTTG 59.689 55.000 0.00 0.00 0.00 2.77
8712 18751 1.164041 CGGTTGCGGTTCCTGTCTTT 61.164 55.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.