Multiple sequence alignment - TraesCS4B01G026400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G026400 chr4B 100.000 6575 0 0 1 6575 19760359 19753785 0.000000e+00 12142.0
1 TraesCS4B01G026400 chr4B 85.025 394 45 10 3967 4348 19756260 19755869 8.000000e-104 388.0
2 TraesCS4B01G026400 chr4B 85.025 394 45 10 4100 4491 19756393 19756012 8.000000e-104 388.0
3 TraesCS4B01G026400 chr4A 92.860 5392 220 81 794 6108 593332962 593338265 0.000000e+00 7672.0
4 TraesCS4B01G026400 chr4A 84.304 395 48 10 4097 4489 593336110 593336492 2.240000e-99 374.0
5 TraesCS4B01G026400 chr4A 80.964 394 47 17 3967 4348 593336250 593336627 3.000000e-73 287.0
6 TraesCS4B01G026400 chr4A 88.235 68 4 3 6183 6246 593340112 593340179 1.970000e-10 78.7
7 TraesCS4B01G026400 chr4D 95.534 2620 79 18 1742 4348 10274441 10271847 0.000000e+00 4156.0
8 TraesCS4B01G026400 chr4D 92.292 1907 98 31 4100 5989 10272228 10270354 0.000000e+00 2662.0
9 TraesCS4B01G026400 chr4D 87.736 848 51 24 794 1634 10275271 10274470 0.000000e+00 941.0
10 TraesCS4B01G026400 chr4D 90.909 110 4 3 6451 6559 10267161 10267057 6.870000e-30 143.0
11 TraesCS4B01G026400 chr4D 98.485 66 1 0 710 775 123308085 123308020 4.170000e-22 117.0
12 TraesCS4B01G026400 chr4D 95.833 72 3 0 704 775 123460338 123460409 4.170000e-22 117.0
13 TraesCS4B01G026400 chr4D 98.485 66 1 0 710 775 123648515 123648450 4.170000e-22 117.0
14 TraesCS4B01G026400 chr3B 82.897 725 79 28 1 699 5224097 5223392 1.570000e-170 610.0
15 TraesCS4B01G026400 chr3B 81.452 744 74 29 1 699 3612595 3613319 9.640000e-153 551.0
16 TraesCS4B01G026400 chr3B 83.230 644 61 21 115 713 117949351 117949992 1.250000e-151 547.0
17 TraesCS4B01G026400 chr3B 83.694 601 59 25 138 704 794881822 794882417 1.260000e-146 531.0
18 TraesCS4B01G026400 chr3B 96.875 32 1 0 64 95 511629591 511629622 3.000000e-03 54.7
19 TraesCS4B01G026400 chr1B 84.211 608 74 16 115 701 580567096 580567702 7.400000e-159 571.0
20 TraesCS4B01G026400 chr1B 82.353 561 61 22 162 704 648444116 648443576 2.800000e-123 453.0
21 TraesCS4B01G026400 chr1B 81.411 581 66 23 162 704 535359105 535358529 2.820000e-118 436.0
22 TraesCS4B01G026400 chr1B 93.421 152 10 0 1621 1772 436689140 436688989 6.630000e-55 226.0
23 TraesCS4B01G026400 chr7D 82.609 621 81 21 114 713 164758759 164758145 2.100000e-144 523.0
24 TraesCS4B01G026400 chr7D 98.485 66 1 0 710 775 467049279 467049214 4.170000e-22 117.0
25 TraesCS4B01G026400 chr7D 98.485 66 1 0 710 775 626669225 626669160 4.170000e-22 117.0
26 TraesCS4B01G026400 chr7D 100.000 34 0 0 1515 1548 237415112 237415079 5.500000e-06 63.9
27 TraesCS4B01G026400 chr7D 96.970 33 1 0 1515 1547 45502316 45502284 1.000000e-03 56.5
28 TraesCS4B01G026400 chr5B 79.942 693 72 31 29 672 148882985 148883659 1.300000e-121 448.0
29 TraesCS4B01G026400 chr5B 82.780 482 46 18 243 703 384600716 384600251 4.780000e-106 396.0
30 TraesCS4B01G026400 chr5B 82.432 370 31 12 343 704 514934810 514934467 6.450000e-75 292.0
31 TraesCS4B01G026400 chr5B 92.857 154 11 0 1615 1768 70793537 70793384 2.390000e-54 224.0
32 TraesCS4B01G026400 chr5B 87.500 56 4 3 1515 1570 298700965 298701017 1.980000e-05 62.1
33 TraesCS4B01G026400 chr3A 78.138 741 80 39 1 704 600338030 600338725 4.780000e-106 396.0
34 TraesCS4B01G026400 chr3A 98.485 66 1 0 710 775 42072684 42072619 4.170000e-22 117.0
35 TraesCS4B01G026400 chr2D 79.732 597 58 30 160 707 469774278 469774860 2.240000e-99 374.0
36 TraesCS4B01G026400 chr2D 93.617 47 3 0 1494 1540 582500653 582500607 3.290000e-08 71.3
37 TraesCS4B01G026400 chr2D 95.122 41 1 1 1507 1547 255929887 255929926 5.500000e-06 63.9
38 TraesCS4B01G026400 chr7B 78.788 627 72 24 115 703 651455457 651454854 1.350000e-96 364.0
39 TraesCS4B01G026400 chr7B 91.925 161 9 2 1621 1779 464547091 464546933 8.580000e-54 222.0
40 TraesCS4B01G026400 chr7B 100.000 36 0 0 1513 1548 214074903 214074868 4.250000e-07 67.6
41 TraesCS4B01G026400 chr7B 92.683 41 3 0 1491 1531 71141109 71141149 7.120000e-05 60.2
42 TraesCS4B01G026400 chr6B 84.483 348 38 10 366 700 91065363 91065019 4.920000e-86 329.0
43 TraesCS4B01G026400 chr6B 98.485 66 1 0 710 775 394467900 394467835 4.170000e-22 117.0
44 TraesCS4B01G026400 chr5D 90.964 166 15 0 1606 1771 59947678 59947843 2.390000e-54 224.0
45 TraesCS4B01G026400 chr5D 87.500 56 4 3 1515 1570 265556160 265556212 1.980000e-05 62.1
46 TraesCS4B01G026400 chr1A 91.411 163 14 0 1609 1771 181769426 181769588 2.390000e-54 224.0
47 TraesCS4B01G026400 chr1A 92.857 42 3 0 1508 1549 96475494 96475535 1.980000e-05 62.1
48 TraesCS4B01G026400 chr5A 90.854 164 15 0 1608 1771 653299603 653299440 3.090000e-53 220.0
49 TraesCS4B01G026400 chr5A 100.000 34 0 0 1515 1548 597290369 597290336 5.500000e-06 63.9
50 TraesCS4B01G026400 chr5A 87.500 56 4 3 1515 1570 353071675 353071727 1.980000e-05 62.1
51 TraesCS4B01G026400 chr2A 90.058 171 16 1 1603 1772 184561323 184561153 3.090000e-53 220.0
52 TraesCS4B01G026400 chr3D 91.250 160 14 0 1605 1764 540564741 540564900 1.110000e-52 219.0
53 TraesCS4B01G026400 chrUn 95.833 72 3 0 704 775 45119450 45119521 4.170000e-22 117.0
54 TraesCS4B01G026400 chr2B 95.833 72 3 0 704 775 391263076 391263147 4.170000e-22 117.0
55 TraesCS4B01G026400 chr6A 95.000 40 2 0 1491 1530 127186144 127186183 5.500000e-06 63.9
56 TraesCS4B01G026400 chr1D 92.857 42 2 1 1508 1548 78977688 78977647 7.120000e-05 60.2
57 TraesCS4B01G026400 chr1D 96.970 33 1 0 1515 1547 17195772 17195804 1.000000e-03 56.5
58 TraesCS4B01G026400 chr1D 100.000 29 0 0 1520 1548 383756594 383756622 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G026400 chr4B 19753785 19760359 6574 True 12142.000 12142 100.00000 1 6575 1 chr4B.!!$R1 6574
1 TraesCS4B01G026400 chr4B 19755869 19756393 524 True 388.000 388 85.02500 3967 4491 2 chr4B.!!$R2 524
2 TraesCS4B01G026400 chr4A 593332962 593340179 7217 False 2102.925 7672 86.59075 794 6246 4 chr4A.!!$F1 5452
3 TraesCS4B01G026400 chr4D 10267057 10275271 8214 True 1975.500 4156 91.61775 794 6559 4 chr4D.!!$R3 5765
4 TraesCS4B01G026400 chr3B 5223392 5224097 705 True 610.000 610 82.89700 1 699 1 chr3B.!!$R1 698
5 TraesCS4B01G026400 chr3B 3612595 3613319 724 False 551.000 551 81.45200 1 699 1 chr3B.!!$F1 698
6 TraesCS4B01G026400 chr3B 117949351 117949992 641 False 547.000 547 83.23000 115 713 1 chr3B.!!$F2 598
7 TraesCS4B01G026400 chr3B 794881822 794882417 595 False 531.000 531 83.69400 138 704 1 chr3B.!!$F4 566
8 TraesCS4B01G026400 chr1B 580567096 580567702 606 False 571.000 571 84.21100 115 701 1 chr1B.!!$F1 586
9 TraesCS4B01G026400 chr1B 648443576 648444116 540 True 453.000 453 82.35300 162 704 1 chr1B.!!$R3 542
10 TraesCS4B01G026400 chr1B 535358529 535359105 576 True 436.000 436 81.41100 162 704 1 chr1B.!!$R2 542
11 TraesCS4B01G026400 chr7D 164758145 164758759 614 True 523.000 523 82.60900 114 713 1 chr7D.!!$R2 599
12 TraesCS4B01G026400 chr5B 148882985 148883659 674 False 448.000 448 79.94200 29 672 1 chr5B.!!$F1 643
13 TraesCS4B01G026400 chr3A 600338030 600338725 695 False 396.000 396 78.13800 1 704 1 chr3A.!!$F1 703
14 TraesCS4B01G026400 chr2D 469774278 469774860 582 False 374.000 374 79.73200 160 707 1 chr2D.!!$F2 547
15 TraesCS4B01G026400 chr7B 651454854 651455457 603 True 364.000 364 78.78800 115 703 1 chr7B.!!$R3 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 105 0.038251 AAGATGCACGCTTCTGACGA 60.038 50.0 8.07 0.0 31.95 4.20 F
104 106 0.038251 AGATGCACGCTTCTGACGAA 60.038 50.0 6.63 0.0 0.00 3.85 F
780 934 0.107214 CCCATTTGCGGAGAAGGCTA 60.107 55.0 0.00 0.0 0.00 3.93 F
1285 1457 0.108019 GGTGTTGAGGGAAGAACGGT 59.892 55.0 0.00 0.0 0.00 4.83 F
1384 1558 0.178068 GCTGCCTTCATCCCGACTTA 59.822 55.0 0.00 0.0 0.00 2.24 F
2890 3073 0.109597 GGATGTCGTTGCAAGCCAAG 60.110 55.0 0.00 0.0 33.21 3.61 F
3362 3545 0.670162 CCTTGAGGCACACTTGGTTG 59.330 55.0 0.00 0.0 0.00 3.77 F
4893 5089 0.110486 TCCCTTCCAAGTTCAGTGGC 59.890 55.0 0.00 0.0 35.99 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 1558 0.321653 GCCTTGTTCGGATCCACAGT 60.322 55.000 13.41 0.0 0.00 3.55 R
1387 1561 0.605319 TGTGCCTTGTTCGGATCCAC 60.605 55.000 13.41 3.7 0.00 4.02 R
2095 2275 1.550524 ACTTCAGGCATCTAACTGCGA 59.449 47.619 0.00 0.0 43.23 5.10 R
2274 2454 2.106566 TGGAACTGCAAAAGCCAAAGA 58.893 42.857 0.00 0.0 0.00 2.52 R
3364 3547 0.676466 TGGCATGAAAGTGGCTACCG 60.676 55.000 0.00 0.0 44.29 4.02 R
4713 4909 0.037697 TGCTGTACCGTGTGTCATCC 60.038 55.000 0.00 0.0 0.00 3.51 R
5100 5296 0.802494 CACTTGGTGCATAACGGTCC 59.198 55.000 0.00 0.0 0.00 4.46 R
6186 9474 0.100146 ATCTCGTACGCCTTCGGTTC 59.900 55.000 11.24 0.0 40.69 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 98 2.350772 CCTTTTCGAAAGATGCACGCTT 60.351 45.455 10.98 0.00 41.60 4.68
97 99 2.594529 TTTCGAAAGATGCACGCTTC 57.405 45.000 6.47 0.00 41.60 3.86
98 100 1.795768 TTCGAAAGATGCACGCTTCT 58.204 45.000 0.00 1.81 41.60 2.85
99 101 1.070821 TCGAAAGATGCACGCTTCTG 58.929 50.000 8.07 1.48 33.31 3.02
100 102 1.070821 CGAAAGATGCACGCTTCTGA 58.929 50.000 8.07 0.00 31.95 3.27
101 103 1.201855 CGAAAGATGCACGCTTCTGAC 60.202 52.381 8.07 5.29 31.95 3.51
102 104 0.792640 AAAGATGCACGCTTCTGACG 59.207 50.000 8.07 0.00 31.95 4.35
103 105 0.038251 AAGATGCACGCTTCTGACGA 60.038 50.000 8.07 0.00 31.95 4.20
104 106 0.038251 AGATGCACGCTTCTGACGAA 60.038 50.000 6.63 0.00 0.00 3.85
105 107 0.790207 GATGCACGCTTCTGACGAAA 59.210 50.000 0.00 0.00 0.00 3.46
106 108 1.394917 GATGCACGCTTCTGACGAAAT 59.605 47.619 0.00 0.00 0.00 2.17
107 109 0.790207 TGCACGCTTCTGACGAAATC 59.210 50.000 0.00 0.00 0.00 2.17
108 110 0.790207 GCACGCTTCTGACGAAATCA 59.210 50.000 0.00 0.00 35.45 2.57
109 111 1.462541 GCACGCTTCTGACGAAATCAC 60.463 52.381 0.00 0.00 32.37 3.06
110 112 1.792367 CACGCTTCTGACGAAATCACA 59.208 47.619 0.00 0.00 32.37 3.58
111 113 2.220824 CACGCTTCTGACGAAATCACAA 59.779 45.455 0.00 0.00 32.37 3.33
112 114 2.221055 ACGCTTCTGACGAAATCACAAC 59.779 45.455 0.00 0.00 32.37 3.32
372 404 1.231958 CGGAAGCAAAACCGTGCCTA 61.232 55.000 0.00 0.00 46.14 3.93
591 738 9.651913 AAGTCAAAAATGCGTATGGAAAAATAT 57.348 25.926 0.00 0.00 0.00 1.28
713 867 8.067784 TCGTTAATTAGTTGCTCTCTTGTTTTG 58.932 33.333 0.00 0.00 0.00 2.44
714 868 7.149128 CGTTAATTAGTTGCTCTCTTGTTTTGC 60.149 37.037 0.00 0.00 0.00 3.68
715 869 2.763249 AGTTGCTCTCTTGTTTTGCG 57.237 45.000 0.00 0.00 0.00 4.85
716 870 1.123655 GTTGCTCTCTTGTTTTGCGC 58.876 50.000 0.00 0.00 0.00 6.09
717 871 0.737804 TTGCTCTCTTGTTTTGCGCA 59.262 45.000 5.66 5.66 0.00 6.09
718 872 0.737804 TGCTCTCTTGTTTTGCGCAA 59.262 45.000 21.02 21.02 0.00 4.85
719 873 1.268692 TGCTCTCTTGTTTTGCGCAAG 60.269 47.619 23.68 11.52 43.26 4.01
720 874 1.927710 GCTCTCTTGTTTTGCGCAAGG 60.928 52.381 23.68 11.96 42.44 3.61
721 875 0.667993 TCTCTTGTTTTGCGCAAGGG 59.332 50.000 23.68 11.49 43.72 3.95
722 876 0.940991 CTCTTGTTTTGCGCAAGGGC 60.941 55.000 23.68 16.77 42.44 5.19
723 877 1.067916 CTTGTTTTGCGCAAGGGCT 59.932 52.632 23.68 0.00 39.53 5.19
724 878 0.940991 CTTGTTTTGCGCAAGGGCTC 60.941 55.000 23.68 12.85 39.53 4.70
725 879 2.429069 GTTTTGCGCAAGGGCTCG 60.429 61.111 23.68 0.00 38.10 5.03
726 880 2.904866 TTTTGCGCAAGGGCTCGT 60.905 55.556 23.68 0.00 38.10 4.18
727 881 3.192954 TTTTGCGCAAGGGCTCGTG 62.193 57.895 23.68 0.00 38.10 4.35
728 882 4.927782 TTGCGCAAGGGCTCGTGT 62.928 61.111 21.02 0.00 38.10 4.49
731 885 2.664851 CGCAAGGGCTCGTGTCAA 60.665 61.111 0.33 0.00 38.10 3.18
732 886 2.250939 CGCAAGGGCTCGTGTCAAA 61.251 57.895 0.33 0.00 38.10 2.69
733 887 1.781025 CGCAAGGGCTCGTGTCAAAA 61.781 55.000 0.33 0.00 38.10 2.44
734 888 0.383949 GCAAGGGCTCGTGTCAAAAA 59.616 50.000 0.33 0.00 36.96 1.94
751 905 2.430248 AAAACTTCCAACCACGTCCT 57.570 45.000 0.00 0.00 0.00 3.85
752 906 1.963172 AAACTTCCAACCACGTCCTC 58.037 50.000 0.00 0.00 0.00 3.71
753 907 0.108019 AACTTCCAACCACGTCCTCC 59.892 55.000 0.00 0.00 0.00 4.30
754 908 0.763223 ACTTCCAACCACGTCCTCCT 60.763 55.000 0.00 0.00 0.00 3.69
755 909 1.263356 CTTCCAACCACGTCCTCCTA 58.737 55.000 0.00 0.00 0.00 2.94
756 910 0.971386 TTCCAACCACGTCCTCCTAC 59.029 55.000 0.00 0.00 0.00 3.18
757 911 0.901580 TCCAACCACGTCCTCCTACC 60.902 60.000 0.00 0.00 0.00 3.18
758 912 0.903454 CCAACCACGTCCTCCTACCT 60.903 60.000 0.00 0.00 0.00 3.08
759 913 0.531200 CAACCACGTCCTCCTACCTC 59.469 60.000 0.00 0.00 0.00 3.85
760 914 0.964358 AACCACGTCCTCCTACCTCG 60.964 60.000 0.00 0.00 0.00 4.63
761 915 2.772691 CCACGTCCTCCTACCTCGC 61.773 68.421 0.00 0.00 0.00 5.03
762 916 2.439883 ACGTCCTCCTACCTCGCC 60.440 66.667 0.00 0.00 0.00 5.54
763 917 3.217743 CGTCCTCCTACCTCGCCC 61.218 72.222 0.00 0.00 0.00 6.13
764 918 2.043248 GTCCTCCTACCTCGCCCA 60.043 66.667 0.00 0.00 0.00 5.36
765 919 1.457831 GTCCTCCTACCTCGCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
766 920 1.049289 GTCCTCCTACCTCGCCCATT 61.049 60.000 0.00 0.00 0.00 3.16
767 921 0.326238 TCCTCCTACCTCGCCCATTT 60.326 55.000 0.00 0.00 0.00 2.32
768 922 0.179045 CCTCCTACCTCGCCCATTTG 60.179 60.000 0.00 0.00 0.00 2.32
769 923 0.815615 CTCCTACCTCGCCCATTTGC 60.816 60.000 0.00 0.00 0.00 3.68
777 931 3.200522 GCCCATTTGCGGAGAAGG 58.799 61.111 0.00 0.00 0.00 3.46
778 932 3.068729 GCCCATTTGCGGAGAAGGC 62.069 63.158 0.00 0.00 0.00 4.35
779 933 1.379044 CCCATTTGCGGAGAAGGCT 60.379 57.895 0.00 0.00 0.00 4.58
780 934 0.107214 CCCATTTGCGGAGAAGGCTA 60.107 55.000 0.00 0.00 0.00 3.93
781 935 1.017387 CCATTTGCGGAGAAGGCTAC 58.983 55.000 0.00 0.00 0.00 3.58
782 936 1.678728 CCATTTGCGGAGAAGGCTACA 60.679 52.381 0.00 0.00 0.00 2.74
783 937 2.292267 CATTTGCGGAGAAGGCTACAT 58.708 47.619 0.00 0.00 0.00 2.29
784 938 3.466836 CATTTGCGGAGAAGGCTACATA 58.533 45.455 0.00 0.00 0.00 2.29
785 939 2.596904 TTGCGGAGAAGGCTACATAC 57.403 50.000 0.00 0.00 0.00 2.39
786 940 1.480789 TGCGGAGAAGGCTACATACA 58.519 50.000 0.00 0.00 0.00 2.29
787 941 1.136305 TGCGGAGAAGGCTACATACAC 59.864 52.381 0.00 0.00 0.00 2.90
788 942 1.136305 GCGGAGAAGGCTACATACACA 59.864 52.381 0.00 0.00 0.00 3.72
789 943 2.799917 GCGGAGAAGGCTACATACACAG 60.800 54.545 0.00 0.00 0.00 3.66
790 944 2.799917 CGGAGAAGGCTACATACACAGC 60.800 54.545 0.00 0.00 37.05 4.40
791 945 2.464865 GAGAAGGCTACATACACAGCG 58.535 52.381 0.00 0.00 38.73 5.18
792 946 1.137086 AGAAGGCTACATACACAGCGG 59.863 52.381 0.00 0.00 38.73 5.52
793 947 0.462047 AAGGCTACATACACAGCGGC 60.462 55.000 0.00 0.00 38.73 6.53
794 948 1.887707 GGCTACATACACAGCGGCC 60.888 63.158 0.00 0.00 38.73 6.13
795 949 1.887707 GCTACATACACAGCGGCCC 60.888 63.158 0.00 0.00 0.00 5.80
796 950 1.591594 CTACATACACAGCGGCCCG 60.592 63.158 0.00 0.00 0.00 6.13
797 951 2.011741 CTACATACACAGCGGCCCGA 62.012 60.000 7.68 0.00 0.00 5.14
798 952 2.287457 TACATACACAGCGGCCCGAC 62.287 60.000 7.68 0.00 0.00 4.79
830 988 4.000988 GGCCCAGTGATATAATAACACCG 58.999 47.826 0.00 0.00 35.47 4.94
880 1042 0.237498 CGAAACAAAGCGAGGGGAAC 59.763 55.000 0.00 0.00 0.00 3.62
907 1069 2.240162 AAACCCTAGCGCTCCCTTCG 62.240 60.000 16.34 0.00 0.00 3.79
915 1077 3.780173 GCTCCCTTCGCCTGCTCT 61.780 66.667 0.00 0.00 0.00 4.09
916 1078 2.985456 CTCCCTTCGCCTGCTCTT 59.015 61.111 0.00 0.00 0.00 2.85
917 1079 1.298014 CTCCCTTCGCCTGCTCTTT 59.702 57.895 0.00 0.00 0.00 2.52
918 1080 0.742635 CTCCCTTCGCCTGCTCTTTC 60.743 60.000 0.00 0.00 0.00 2.62
919 1081 1.194781 TCCCTTCGCCTGCTCTTTCT 61.195 55.000 0.00 0.00 0.00 2.52
938 1100 5.913946 TTCTTTCTTTCTTTCTCCCCTCT 57.086 39.130 0.00 0.00 0.00 3.69
940 1102 3.963428 TTCTTTCTTTCTCCCCTCTCG 57.037 47.619 0.00 0.00 0.00 4.04
941 1103 1.550976 TCTTTCTTTCTCCCCTCTCGC 59.449 52.381 0.00 0.00 0.00 5.03
942 1104 0.613777 TTTCTTTCTCCCCTCTCGCC 59.386 55.000 0.00 0.00 0.00 5.54
943 1105 1.605058 TTCTTTCTCCCCTCTCGCCG 61.605 60.000 0.00 0.00 0.00 6.46
944 1106 2.283676 TTTCTCCCCTCTCGCCGT 60.284 61.111 0.00 0.00 0.00 5.68
983 1145 2.846827 CCTCTCACCCAAACCCTAATCT 59.153 50.000 0.00 0.00 0.00 2.40
1280 1452 3.269592 TTAGAGGGTGTTGAGGGAAGA 57.730 47.619 0.00 0.00 0.00 2.87
1282 1454 1.700186 AGAGGGTGTTGAGGGAAGAAC 59.300 52.381 0.00 0.00 0.00 3.01
1285 1457 0.108019 GGTGTTGAGGGAAGAACGGT 59.892 55.000 0.00 0.00 0.00 4.83
1290 1462 2.742589 GTTGAGGGAAGAACGGTGAATC 59.257 50.000 0.00 0.00 0.00 2.52
1368 1542 7.710676 ATATAAGTGATAGGTCTAGGTGCTG 57.289 40.000 0.00 0.00 0.00 4.41
1379 1553 2.825836 GGTGCTGCCTTCATCCCG 60.826 66.667 0.00 0.00 0.00 5.14
1384 1558 0.178068 GCTGCCTTCATCCCGACTTA 59.822 55.000 0.00 0.00 0.00 2.24
1387 1561 1.207089 TGCCTTCATCCCGACTTACTG 59.793 52.381 0.00 0.00 0.00 2.74
1416 1590 0.689055 ACAAGGCACATGAGCTCAGA 59.311 50.000 22.96 0.00 34.17 3.27
1424 1598 2.740981 CACATGAGCTCAGAGTTTGGTC 59.259 50.000 22.96 0.00 0.00 4.02
1437 1611 5.981315 CAGAGTTTGGTCTCGTGTAGTTAAA 59.019 40.000 0.00 0.00 39.21 1.52
1450 1624 6.261381 TCGTGTAGTTAAAACTGGCTCAATTT 59.739 34.615 5.62 0.00 40.07 1.82
1463 1638 8.507524 ACTGGCTCAATTTTCTAGGTTAATAC 57.492 34.615 0.00 0.00 0.00 1.89
1464 1639 8.329502 ACTGGCTCAATTTTCTAGGTTAATACT 58.670 33.333 0.00 0.00 0.00 2.12
1465 1640 9.832445 CTGGCTCAATTTTCTAGGTTAATACTA 57.168 33.333 0.00 0.00 0.00 1.82
1481 1656 7.226128 GGTTAATACTACTTGACAGTAATGGGC 59.774 40.741 0.00 0.00 34.94 5.36
1482 1657 6.561519 AATACTACTTGACAGTAATGGGCT 57.438 37.500 0.00 0.00 34.94 5.19
1551 1726 9.251440 ACATTAAGTTACAGAGGTAGTATGTCA 57.749 33.333 0.00 0.00 31.40 3.58
1561 1736 3.994392 AGGTAGTATGTCAAAACGCACAG 59.006 43.478 0.00 0.00 0.00 3.66
1566 1741 3.878086 ATGTCAAAACGCACAGTGTAG 57.122 42.857 1.61 0.00 0.00 2.74
1573 1748 3.861276 AACGCACAGTGTAGTATGCTA 57.139 42.857 1.61 0.00 35.88 3.49
1596 1771 9.508567 GCTATCTTCTCAAAATGAATAAACACC 57.491 33.333 0.00 0.00 0.00 4.16
1611 1786 7.988599 TGAATAAACACCGGTGCTAATTAGTAT 59.011 33.333 34.26 12.66 0.00 2.12
1613 1788 8.741603 ATAAACACCGGTGCTAATTAGTATTT 57.258 30.769 34.26 22.63 0.00 1.40
1619 1794 5.927115 CCGGTGCTAATTAGTATTTCCTCTC 59.073 44.000 13.91 0.00 0.00 3.20
1660 1840 8.321353 TCTTTTTAGAGATTCCAATGCAGACTA 58.679 33.333 0.00 0.00 0.00 2.59
1714 1894 9.642343 ACTCTAAAGTATGTCTATGTACATCCA 57.358 33.333 12.68 8.34 40.52 3.41
1736 1916 6.998074 TCCATATGTAGTCCATGTTGAAATCC 59.002 38.462 1.24 0.00 34.86 3.01
1826 2006 4.004196 AGCGTTCTTTAGTTTGTAGCCT 57.996 40.909 0.00 0.00 0.00 4.58
1830 2010 5.579511 GCGTTCTTTAGTTTGTAGCCTCATA 59.420 40.000 0.00 0.00 0.00 2.15
1860 2040 4.811063 GCTCACAGTATTTTTCTCCCCCTT 60.811 45.833 0.00 0.00 0.00 3.95
1872 2052 3.064324 CCCCTTCCTTTGCTGGCG 61.064 66.667 0.00 0.00 0.00 5.69
2095 2275 1.156736 GTCGTGCTGGTGCTGTTTAT 58.843 50.000 0.00 0.00 40.48 1.40
2141 2321 2.956132 TCAGGGCCTGTGAAATTTGAA 58.044 42.857 31.60 6.79 32.61 2.69
2176 2356 3.742433 ACCCTTGATCTATCTTGCTCG 57.258 47.619 0.00 0.00 0.00 5.03
2274 2454 3.299503 ACAAGAAATGCCTTCAGTGGTT 58.700 40.909 0.00 0.00 36.40 3.67
2730 2912 8.853077 TGTCCCAATCATTTATCTCATCATAC 57.147 34.615 0.00 0.00 0.00 2.39
2857 3040 4.640201 GTGCAACCTGATCTTATTGGCTTA 59.360 41.667 0.00 0.00 0.00 3.09
2884 3067 6.767524 ATAATTTAAGGGATGTCGTTGCAA 57.232 33.333 0.00 0.00 0.00 4.08
2890 3073 0.109597 GGATGTCGTTGCAAGCCAAG 60.110 55.000 0.00 0.00 33.21 3.61
2891 3074 0.109597 GATGTCGTTGCAAGCCAAGG 60.110 55.000 0.00 0.00 39.92 3.61
2900 3083 3.084536 TGCAAGCCAAGGAATCATGTA 57.915 42.857 0.00 0.00 0.00 2.29
2905 3088 5.431765 CAAGCCAAGGAATCATGTAGTAGT 58.568 41.667 0.00 0.00 0.00 2.73
3071 3254 1.127343 AACCAACCCCACACATTTGG 58.873 50.000 0.00 0.00 43.61 3.28
3225 3408 5.277779 CGCCTGAGAATGTTGTTCTTGTTTA 60.278 40.000 0.00 0.00 0.00 2.01
3252 3435 8.599774 GCTTCTGACAGAGTAATTCACTAATTC 58.400 37.037 5.10 0.00 37.72 2.17
3313 3496 7.056635 AGTGGTTTATGCATTTAGTCATAGCT 58.943 34.615 3.54 0.00 0.00 3.32
3321 3504 7.677454 TGCATTTAGTCATAGCTTGATATGG 57.323 36.000 0.00 0.00 36.54 2.74
3362 3545 0.670162 CCTTGAGGCACACTTGGTTG 59.330 55.000 0.00 0.00 0.00 3.77
3363 3546 0.670162 CTTGAGGCACACTTGGTTGG 59.330 55.000 0.00 0.00 0.00 3.77
3364 3547 1.391157 TTGAGGCACACTTGGTTGGC 61.391 55.000 0.00 0.00 0.00 4.52
3490 3673 6.007076 CAGGATTATCCAGAGCAGTCTAGTA 58.993 44.000 14.30 0.00 39.61 1.82
3556 3739 3.540314 TGCTCAAATGTTTGTTTGCCT 57.460 38.095 5.48 0.00 38.61 4.75
3904 4087 6.731292 TTCTATGAGACTTGGCTGCTATAA 57.269 37.500 0.00 0.00 0.00 0.98
4539 4735 4.406972 TGCTCTGTATGTAGGCTGATTCTT 59.593 41.667 0.00 0.00 0.00 2.52
4785 4981 0.679960 GTGGTGGTAAGGGTGATGGC 60.680 60.000 0.00 0.00 0.00 4.40
4893 5089 0.110486 TCCCTTCCAAGTTCAGTGGC 59.890 55.000 0.00 0.00 35.99 5.01
4962 5158 2.041966 CGTTACGTGGATGATCGCTAC 58.958 52.381 0.00 0.00 0.00 3.58
5055 5251 3.001406 GCCAGTGACCGGTACCCT 61.001 66.667 7.34 0.00 0.00 4.34
5094 5290 0.539051 GTGCAGACAGGTATGGAGCT 59.461 55.000 0.00 0.00 0.00 4.09
5173 5369 3.211045 AGAAGCTACGAGAGAGATGGAC 58.789 50.000 0.00 0.00 0.00 4.02
5188 5384 3.041940 GACTTCGTGGTGGTGGCG 61.042 66.667 0.00 0.00 0.00 5.69
5189 5385 4.619227 ACTTCGTGGTGGTGGCGG 62.619 66.667 0.00 0.00 0.00 6.13
5229 5425 3.920093 AAGGGGCGGTGCAAGCTAC 62.920 63.158 14.02 8.26 34.52 3.58
5408 5604 0.723414 TTCGACGACCGCTACTAGTG 59.277 55.000 5.39 0.00 38.37 2.74
5409 5605 0.108662 TCGACGACCGCTACTAGTGA 60.109 55.000 5.39 0.00 38.37 3.41
5410 5606 0.026027 CGACGACCGCTACTAGTGAC 59.974 60.000 5.39 0.00 0.00 3.67
5411 5607 0.376502 GACGACCGCTACTAGTGACC 59.623 60.000 5.39 0.00 0.00 4.02
5439 5635 1.202302 TGCTGCAGTCGAGCTATGTAC 60.202 52.381 16.64 0.00 37.35 2.90
5449 5645 3.991773 TCGAGCTATGTACTTGCGTTTTT 59.008 39.130 0.00 0.00 0.00 1.94
5451 5647 5.634439 TCGAGCTATGTACTTGCGTTTTTAA 59.366 36.000 0.00 0.00 0.00 1.52
5452 5648 6.311935 TCGAGCTATGTACTTGCGTTTTTAAT 59.688 34.615 0.00 0.00 0.00 1.40
5524 5720 4.265556 CGGTTATCTCTTTTCTGTACTGCG 59.734 45.833 0.00 0.00 0.00 5.18
5536 5732 3.762288 TCTGTACTGCGAATGTTACTCCT 59.238 43.478 0.00 0.00 0.00 3.69
5537 5733 4.219944 TCTGTACTGCGAATGTTACTCCTT 59.780 41.667 0.00 0.00 0.00 3.36
5539 5735 2.699954 ACTGCGAATGTTACTCCTTGG 58.300 47.619 0.00 0.00 0.00 3.61
5541 5737 0.733150 GCGAATGTTACTCCTTGGGC 59.267 55.000 0.00 0.00 0.00 5.36
5542 5738 1.948611 GCGAATGTTACTCCTTGGGCA 60.949 52.381 0.00 0.00 0.00 5.36
5543 5739 2.009774 CGAATGTTACTCCTTGGGCAG 58.990 52.381 0.00 0.00 0.00 4.85
5544 5740 2.615493 CGAATGTTACTCCTTGGGCAGT 60.615 50.000 0.00 0.00 0.00 4.40
5545 5741 2.496899 ATGTTACTCCTTGGGCAGTG 57.503 50.000 0.00 0.00 0.00 3.66
5546 5742 0.400213 TGTTACTCCTTGGGCAGTGG 59.600 55.000 0.00 0.00 0.00 4.00
5547 5743 0.400594 GTTACTCCTTGGGCAGTGGT 59.599 55.000 0.00 0.00 0.00 4.16
5548 5744 1.145571 TTACTCCTTGGGCAGTGGTT 58.854 50.000 0.00 0.00 0.00 3.67
5549 5745 0.400213 TACTCCTTGGGCAGTGGTTG 59.600 55.000 0.00 0.00 0.00 3.77
5571 5767 3.214328 AGTTTACCCAGCAGACTGTTTG 58.786 45.455 3.99 3.44 42.81 2.93
5579 5775 1.369689 CAGACTGTTTGCGTGCTGC 60.370 57.895 0.00 0.00 46.70 5.25
5589 5786 1.207593 GCGTGCTGCGTTGAATCTT 59.792 52.632 0.00 0.00 43.66 2.40
5590 5787 0.790866 GCGTGCTGCGTTGAATCTTC 60.791 55.000 0.00 0.00 43.66 2.87
5592 5789 0.179215 GTGCTGCGTTGAATCTTCCG 60.179 55.000 0.00 0.00 0.00 4.30
5597 5794 1.419922 CGTTGAATCTTCCGTGCCG 59.580 57.895 0.00 0.00 0.00 5.69
5612 5809 2.906897 CCGTGGCAGTTGGCTGTT 60.907 61.111 7.23 0.00 44.32 3.16
5613 5810 2.332514 CGTGGCAGTTGGCTGTTG 59.667 61.111 7.23 0.00 44.32 3.33
5614 5811 2.480610 CGTGGCAGTTGGCTGTTGT 61.481 57.895 7.23 0.00 44.32 3.32
5615 5812 1.360192 GTGGCAGTTGGCTGTTGTC 59.640 57.895 7.23 0.00 44.32 3.18
5626 5823 0.031178 GCTGTTGTCACCTTTGCTGG 59.969 55.000 0.00 0.00 0.00 4.85
5644 5841 5.125356 TGCTGGATGATGGTTTATGTACTG 58.875 41.667 0.00 0.00 0.00 2.74
5664 5862 6.754702 ACTGCTGCATGATATTATCAATCC 57.245 37.500 10.30 3.32 43.50 3.01
5699 5897 1.598962 GCTGCTCTGCTGTGGTTGA 60.599 57.895 0.00 0.00 0.00 3.18
5701 5899 0.803117 CTGCTCTGCTGTGGTTGATG 59.197 55.000 0.00 0.00 0.00 3.07
5706 5904 3.079578 CTCTGCTGTGGTTGATGTGAAT 58.920 45.455 0.00 0.00 0.00 2.57
5721 5919 1.022982 TGAATTCCTGCTGCTCTGCG 61.023 55.000 2.27 0.00 35.36 5.18
5740 5938 1.202734 CGGTGGATGAATCTGATGGCT 60.203 52.381 0.00 0.00 0.00 4.75
5748 5946 3.995199 TGAATCTGATGGCTCGGTAATC 58.005 45.455 0.00 0.00 0.00 1.75
5830 6028 1.480545 GACCTGGTTGTTTTGGCTGTT 59.519 47.619 0.00 0.00 0.00 3.16
5848 6053 2.884012 TGTTGGCTACTGAATGTGGTTG 59.116 45.455 0.01 0.00 0.00 3.77
5862 6067 0.740149 TGGTTGCTGAACTTGTGCAG 59.260 50.000 4.43 4.43 38.01 4.41
5897 6102 6.942532 TCTGAATTTATGAAATCCTTCCGG 57.057 37.500 0.00 0.00 0.00 5.14
5950 6155 3.008330 GCTTTGAGACAGAGCATCATGT 58.992 45.455 8.92 0.00 40.62 3.21
5955 6160 3.754850 TGAGACAGAGCATCATGTTTTGG 59.245 43.478 0.00 0.00 37.82 3.28
5967 6172 0.033228 TGTTTTGGCGAATGGGCTTG 59.967 50.000 0.00 0.00 42.84 4.01
5968 6173 0.033366 GTTTTGGCGAATGGGCTTGT 59.967 50.000 0.00 0.00 42.84 3.16
5969 6174 0.316841 TTTTGGCGAATGGGCTTGTC 59.683 50.000 0.00 0.00 42.84 3.18
5971 6176 0.539438 TTGGCGAATGGGCTTGTCTT 60.539 50.000 0.00 0.00 42.84 3.01
5989 6201 6.715344 TGTCTTCCATCACGTGTTATTTAC 57.285 37.500 16.51 7.86 0.00 2.01
5990 6202 6.224584 TGTCTTCCATCACGTGTTATTTACA 58.775 36.000 16.51 10.25 0.00 2.41
5991 6203 6.706716 TGTCTTCCATCACGTGTTATTTACAA 59.293 34.615 16.51 0.00 38.80 2.41
5992 6204 7.226918 TGTCTTCCATCACGTGTTATTTACAAA 59.773 33.333 16.51 0.00 38.80 2.83
5993 6205 8.234546 GTCTTCCATCACGTGTTATTTACAAAT 58.765 33.333 16.51 0.00 38.80 2.32
5994 6206 8.233868 TCTTCCATCACGTGTTATTTACAAATG 58.766 33.333 16.51 7.45 38.80 2.32
5996 6208 8.549338 TCCATCACGTGTTATTTACAAATGTA 57.451 30.769 16.51 0.00 38.80 2.29
5998 6210 8.661257 CCATCACGTGTTATTTACAAATGTAGA 58.339 33.333 16.51 0.00 38.80 2.59
6040 6282 8.514330 TGTTTAGTCCAGTGTTTCTGTAAAAT 57.486 30.769 0.00 0.00 42.19 1.82
6048 6290 6.264832 CAGTGTTTCTGTAAAATTGCTGTGA 58.735 36.000 0.00 0.00 39.17 3.58
6083 6325 0.527817 GTCGACCCTTCGTGCTATGG 60.528 60.000 3.51 0.00 46.01 2.74
6086 6328 1.869754 CGACCCTTCGTGCTATGGATG 60.870 57.143 0.00 0.00 40.61 3.51
6097 6339 4.094887 CGTGCTATGGATGCAAACTTACTT 59.905 41.667 0.00 0.00 42.41 2.24
6108 6350 8.825745 GGATGCAAACTTACTTTTTGATTCAAA 58.174 29.630 7.74 7.74 36.24 2.69
6110 6352 9.986833 ATGCAAACTTACTTTTTGATTCAAAAC 57.013 25.926 21.15 8.78 42.02 2.43
6112 6354 9.261318 GCAAACTTACTTTTTGATTCAAAACAC 57.739 29.630 21.15 2.16 42.02 3.32
6153 7042 2.422479 CACCATGCCTCTGAATCTTGTG 59.578 50.000 0.00 0.00 0.00 3.33
6156 7045 0.694771 TGCCTCTGAATCTTGTGCCT 59.305 50.000 0.00 0.00 0.00 4.75
6158 7047 1.065564 GCCTCTGAATCTTGTGCCTCT 60.066 52.381 0.00 0.00 0.00 3.69
6159 7048 2.617532 GCCTCTGAATCTTGTGCCTCTT 60.618 50.000 0.00 0.00 0.00 2.85
6161 7050 4.836825 CCTCTGAATCTTGTGCCTCTTTA 58.163 43.478 0.00 0.00 0.00 1.85
6162 7051 5.435291 CCTCTGAATCTTGTGCCTCTTTAT 58.565 41.667 0.00 0.00 0.00 1.40
6170 9457 5.175859 TCTTGTGCCTCTTTATAACTTCCG 58.824 41.667 0.00 0.00 0.00 4.30
6186 9474 4.914420 CGAGAGGGCGCGCTGTAG 62.914 72.222 33.13 23.88 0.00 2.74
6207 9509 2.578369 CCGAAGGCGTACGAGATTG 58.422 57.895 21.65 7.14 46.14 2.67
6246 9548 1.429148 CGGTTAGTCCAATCGGCAGC 61.429 60.000 0.00 0.00 37.09 5.25
6247 9549 1.429148 GGTTAGTCCAATCGGCAGCG 61.429 60.000 0.00 0.00 35.97 5.18
6251 9553 4.713735 TCCAATCGGCAGCGGCAA 62.714 61.111 11.88 0.00 43.71 4.52
6253 9555 3.736100 CAATCGGCAGCGGCAACA 61.736 61.111 11.88 0.00 43.71 3.33
6254 9556 2.983030 AATCGGCAGCGGCAACAA 60.983 55.556 11.88 0.00 43.71 2.83
6255 9557 2.981560 AATCGGCAGCGGCAACAAG 61.982 57.895 11.88 0.00 43.71 3.16
6256 9558 3.899981 ATCGGCAGCGGCAACAAGA 62.900 57.895 11.88 2.07 43.71 3.02
6257 9559 4.093952 CGGCAGCGGCAACAAGAG 62.094 66.667 11.88 0.00 43.71 2.85
6258 9560 2.980233 GGCAGCGGCAACAAGAGT 60.980 61.111 11.88 0.00 43.71 3.24
6259 9561 2.555547 GGCAGCGGCAACAAGAGTT 61.556 57.895 11.88 0.00 43.71 3.01
6260 9562 1.081840 GCAGCGGCAACAAGAGTTC 60.082 57.895 3.18 0.00 40.72 3.01
6262 9564 0.877071 CAGCGGCAACAAGAGTTCAT 59.123 50.000 1.45 0.00 35.28 2.57
6263 9565 0.877071 AGCGGCAACAAGAGTTCATG 59.123 50.000 1.45 0.00 35.28 3.07
6264 9566 0.730494 GCGGCAACAAGAGTTCATGC 60.730 55.000 0.00 0.00 35.28 4.06
6265 9567 0.453282 CGGCAACAAGAGTTCATGCG 60.453 55.000 0.00 0.00 35.28 4.73
6266 9568 0.874390 GGCAACAAGAGTTCATGCGA 59.126 50.000 0.00 0.00 35.28 5.10
6267 9569 1.470098 GGCAACAAGAGTTCATGCGAT 59.530 47.619 0.00 0.00 35.28 4.58
6268 9570 2.512885 GCAACAAGAGTTCATGCGATG 58.487 47.619 0.00 0.00 35.28 3.84
6269 9571 2.512885 CAACAAGAGTTCATGCGATGC 58.487 47.619 0.00 0.00 35.28 3.91
6270 9572 0.723414 ACAAGAGTTCATGCGATGCG 59.277 50.000 0.00 0.00 0.00 4.73
6271 9573 1.001624 CAAGAGTTCATGCGATGCGA 58.998 50.000 0.00 0.00 0.00 5.10
6273 9575 0.529337 AGAGTTCATGCGATGCGAGG 60.529 55.000 0.00 0.00 0.00 4.63
6274 9576 0.528466 GAGTTCATGCGATGCGAGGA 60.528 55.000 0.00 0.00 0.00 3.71
6275 9577 0.807667 AGTTCATGCGATGCGAGGAC 60.808 55.000 0.00 0.00 0.00 3.85
6276 9578 1.878069 TTCATGCGATGCGAGGACG 60.878 57.895 0.00 0.00 42.93 4.79
6286 9588 4.907034 CGAGGACGCGCGCACTAT 62.907 66.667 32.58 10.34 0.00 2.12
6288 9590 4.873129 AGGACGCGCGCACTATGG 62.873 66.667 32.58 16.12 0.00 2.74
6289 9591 4.865761 GGACGCGCGCACTATGGA 62.866 66.667 32.58 0.00 0.00 3.41
6291 9593 2.932083 GACGCGCGCACTATGGATG 61.932 63.158 32.58 13.71 0.00 3.51
6298 9600 2.906047 GCACTATGGATGCGGAGAC 58.094 57.895 0.00 0.00 32.45 3.36
6314 9616 3.735029 ACGGCGACACGTCTCTCC 61.735 66.667 16.62 0.00 45.08 3.71
6315 9617 4.477975 CGGCGACACGTCTCTCCC 62.478 72.222 0.00 0.00 0.00 4.30
6316 9618 3.063084 GGCGACACGTCTCTCCCT 61.063 66.667 0.00 0.00 0.00 4.20
6322 9624 4.057428 ACGTCTCTCCCTGTGCGC 62.057 66.667 0.00 0.00 0.00 6.09
6323 9625 4.056125 CGTCTCTCCCTGTGCGCA 62.056 66.667 5.66 5.66 0.00 6.09
6347 9649 0.529337 CTCGCATCGCATGACCTCTT 60.529 55.000 0.00 0.00 0.00 2.85
6356 9658 2.797156 CGCATGACCTCTTTCTTATCCG 59.203 50.000 0.00 0.00 0.00 4.18
6364 9666 5.246307 ACCTCTTTCTTATCCGAAACCTTG 58.754 41.667 0.00 0.00 0.00 3.61
6375 9677 1.520494 GAAACCTTGTTCCCCGTCTC 58.480 55.000 0.00 0.00 0.00 3.36
6385 9687 0.908180 TCCCCGTCTCCCTTTCTTCC 60.908 60.000 0.00 0.00 0.00 3.46
6386 9688 0.910088 CCCCGTCTCCCTTTCTTCCT 60.910 60.000 0.00 0.00 0.00 3.36
6387 9689 0.537653 CCCGTCTCCCTTTCTTCCTC 59.462 60.000 0.00 0.00 0.00 3.71
6389 9691 0.537653 CGTCTCCCTTTCTTCCTCCC 59.462 60.000 0.00 0.00 0.00 4.30
6390 9692 1.657804 GTCTCCCTTTCTTCCTCCCA 58.342 55.000 0.00 0.00 0.00 4.37
6391 9693 1.985895 GTCTCCCTTTCTTCCTCCCAA 59.014 52.381 0.00 0.00 0.00 4.12
6392 9694 2.578480 GTCTCCCTTTCTTCCTCCCAAT 59.422 50.000 0.00 0.00 0.00 3.16
6393 9695 3.010696 GTCTCCCTTTCTTCCTCCCAATT 59.989 47.826 0.00 0.00 0.00 2.32
6394 9696 3.010584 TCTCCCTTTCTTCCTCCCAATTG 59.989 47.826 0.00 0.00 0.00 2.32
6395 9697 2.993146 TCCCTTTCTTCCTCCCAATTGA 59.007 45.455 7.12 0.00 0.00 2.57
6396 9698 3.401002 TCCCTTTCTTCCTCCCAATTGAA 59.599 43.478 7.12 0.00 0.00 2.69
6397 9699 4.140805 TCCCTTTCTTCCTCCCAATTGAAA 60.141 41.667 7.12 0.00 0.00 2.69
6398 9700 4.779489 CCCTTTCTTCCTCCCAATTGAAAT 59.221 41.667 7.12 0.00 0.00 2.17
6399 9701 5.337813 CCCTTTCTTCCTCCCAATTGAAATG 60.338 44.000 7.12 0.00 0.00 2.32
6400 9702 5.337813 CCTTTCTTCCTCCCAATTGAAATGG 60.338 44.000 7.12 0.00 37.71 3.16
6406 9708 1.521616 CCAATTGAAATGGGCCCCG 59.478 57.895 22.27 0.00 34.15 5.73
6407 9709 1.153389 CAATTGAAATGGGCCCCGC 60.153 57.895 22.27 6.31 0.00 6.13
6429 9731 1.006102 CCGCCTCCCGCTATACAAG 60.006 63.158 0.00 0.00 35.03 3.16
6430 9732 1.006102 CGCCTCCCGCTATACAAGG 60.006 63.158 0.00 0.00 34.21 3.61
6431 9733 1.461091 CGCCTCCCGCTATACAAGGA 61.461 60.000 0.00 0.00 34.21 3.36
6433 9735 1.348036 GCCTCCCGCTATACAAGGAAT 59.652 52.381 0.00 0.00 0.00 3.01
6434 9736 2.872038 GCCTCCCGCTATACAAGGAATG 60.872 54.545 0.00 0.00 0.00 2.67
6435 9737 2.632996 CCTCCCGCTATACAAGGAATGA 59.367 50.000 0.00 0.00 0.00 2.57
6436 9738 3.555168 CCTCCCGCTATACAAGGAATGAC 60.555 52.174 0.00 0.00 0.00 3.06
6437 9739 3.035363 TCCCGCTATACAAGGAATGACA 58.965 45.455 0.00 0.00 0.00 3.58
6438 9740 3.069586 TCCCGCTATACAAGGAATGACAG 59.930 47.826 0.00 0.00 0.00 3.51
6440 9742 4.051922 CCGCTATACAAGGAATGACAGAC 58.948 47.826 0.00 0.00 0.00 3.51
6441 9743 4.441495 CCGCTATACAAGGAATGACAGACA 60.441 45.833 0.00 0.00 0.00 3.41
6442 9744 5.109210 CGCTATACAAGGAATGACAGACAA 58.891 41.667 0.00 0.00 0.00 3.18
6443 9745 5.580691 CGCTATACAAGGAATGACAGACAAA 59.419 40.000 0.00 0.00 0.00 2.83
6444 9746 6.258727 CGCTATACAAGGAATGACAGACAAAT 59.741 38.462 0.00 0.00 0.00 2.32
6445 9747 7.438160 CGCTATACAAGGAATGACAGACAAATA 59.562 37.037 0.00 0.00 0.00 1.40
6446 9748 9.109393 GCTATACAAGGAATGACAGACAAATAA 57.891 33.333 0.00 0.00 0.00 1.40
6449 9751 7.396540 ACAAGGAATGACAGACAAATAATCC 57.603 36.000 0.00 0.00 0.00 3.01
6484 9786 3.987220 CCTTTTGTTATTCCGTGGCAAAG 59.013 43.478 0.00 0.00 31.87 2.77
6485 9787 4.500716 CCTTTTGTTATTCCGTGGCAAAGT 60.501 41.667 0.00 0.00 31.87 2.66
6486 9788 3.634568 TTGTTATTCCGTGGCAAAGTG 57.365 42.857 0.00 0.00 0.00 3.16
6487 9789 2.852449 TGTTATTCCGTGGCAAAGTGA 58.148 42.857 0.00 0.00 0.00 3.41
6488 9790 3.417101 TGTTATTCCGTGGCAAAGTGAT 58.583 40.909 0.00 0.00 0.00 3.06
6489 9791 3.190327 TGTTATTCCGTGGCAAAGTGATG 59.810 43.478 0.00 0.00 0.00 3.07
6490 9792 1.909700 ATTCCGTGGCAAAGTGATGT 58.090 45.000 0.00 0.00 0.00 3.06
6491 9793 0.950836 TTCCGTGGCAAAGTGATGTG 59.049 50.000 0.00 0.00 0.00 3.21
6492 9794 0.179032 TCCGTGGCAAAGTGATGTGT 60.179 50.000 0.00 0.00 0.00 3.72
6493 9795 0.040157 CCGTGGCAAAGTGATGTGTG 60.040 55.000 0.00 0.00 0.00 3.82
6494 9796 0.661187 CGTGGCAAAGTGATGTGTGC 60.661 55.000 0.00 0.00 36.24 4.57
6495 9797 0.670162 GTGGCAAAGTGATGTGTGCT 59.330 50.000 0.00 0.00 37.17 4.40
6496 9798 0.953727 TGGCAAAGTGATGTGTGCTC 59.046 50.000 0.00 0.00 37.17 4.26
6497 9799 0.953727 GGCAAAGTGATGTGTGCTCA 59.046 50.000 0.00 0.00 37.17 4.26
6498 9800 1.068748 GGCAAAGTGATGTGTGCTCAG 60.069 52.381 0.00 0.00 37.17 3.35
6499 9801 1.068748 GCAAAGTGATGTGTGCTCAGG 60.069 52.381 0.00 0.00 34.13 3.86
6518 9820 1.067916 CAGGTTTGCAGCCACCAAC 59.932 57.895 12.46 1.89 35.25 3.77
6531 9833 2.288152 GCCACCAACGTTCACATGAAAT 60.288 45.455 0.00 0.00 35.58 2.17
6532 9834 3.798548 GCCACCAACGTTCACATGAAATT 60.799 43.478 0.00 0.00 35.58 1.82
6556 9858 2.076628 CGCATTCACGTGCTGCAAC 61.077 57.895 29.69 11.58 42.88 4.17
6559 9861 0.241749 CATTCACGTGCTGCAACCAT 59.758 50.000 11.67 0.00 0.00 3.55
6560 9862 1.468127 CATTCACGTGCTGCAACCATA 59.532 47.619 11.67 0.00 0.00 2.74
6561 9863 1.155889 TTCACGTGCTGCAACCATAG 58.844 50.000 11.67 0.00 0.00 2.23
6562 9864 1.135315 CACGTGCTGCAACCATAGC 59.865 57.895 2.77 0.00 40.29 2.97
6563 9865 1.302431 ACGTGCTGCAACCATAGCA 60.302 52.632 2.77 0.00 46.79 3.49
6568 9870 3.211718 TGCTGCAACCATAGCATATCA 57.788 42.857 0.00 0.00 44.36 2.15
6569 9871 2.880268 TGCTGCAACCATAGCATATCAC 59.120 45.455 0.00 0.00 44.36 3.06
6570 9872 2.096069 GCTGCAACCATAGCATATCACG 60.096 50.000 0.00 0.00 41.82 4.35
6571 9873 3.392882 CTGCAACCATAGCATATCACGA 58.607 45.455 0.00 0.00 41.82 4.35
6572 9874 3.392882 TGCAACCATAGCATATCACGAG 58.607 45.455 0.00 0.00 37.02 4.18
6573 9875 2.158449 GCAACCATAGCATATCACGAGC 59.842 50.000 0.00 0.00 0.00 5.03
6574 9876 3.392882 CAACCATAGCATATCACGAGCA 58.607 45.455 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 109 7.257397 TGATTTCGTCAGATGCACAGTTGTG 62.257 44.000 7.88 7.88 39.42 3.33
108 110 2.238942 TTCGTCAGATGCACAGTTGT 57.761 45.000 0.00 0.00 0.00 3.32
109 111 3.187022 TGATTTCGTCAGATGCACAGTTG 59.813 43.478 0.00 0.00 31.80 3.16
110 112 3.187227 GTGATTTCGTCAGATGCACAGTT 59.813 43.478 0.00 0.00 37.56 3.16
111 113 2.738846 GTGATTTCGTCAGATGCACAGT 59.261 45.455 0.00 0.00 37.56 3.55
112 114 2.738314 TGTGATTTCGTCAGATGCACAG 59.262 45.455 0.00 0.00 37.56 3.66
557 704 8.543774 CCATACGCATTTTTGACTTTTTAAACA 58.456 29.630 0.00 0.00 0.00 2.83
714 868 1.781025 TTTTGACACGAGCCCTTGCG 61.781 55.000 0.00 0.00 44.33 4.85
715 869 0.383949 TTTTTGACACGAGCCCTTGC 59.616 50.000 0.00 0.00 37.95 4.01
731 885 2.686405 GAGGACGTGGTTGGAAGTTTTT 59.314 45.455 0.00 0.00 0.00 1.94
732 886 2.294979 GAGGACGTGGTTGGAAGTTTT 58.705 47.619 0.00 0.00 0.00 2.43
733 887 1.476291 GGAGGACGTGGTTGGAAGTTT 60.476 52.381 0.00 0.00 0.00 2.66
734 888 0.108019 GGAGGACGTGGTTGGAAGTT 59.892 55.000 0.00 0.00 0.00 2.66
735 889 0.763223 AGGAGGACGTGGTTGGAAGT 60.763 55.000 0.00 0.00 0.00 3.01
736 890 1.067071 GTAGGAGGACGTGGTTGGAAG 60.067 57.143 0.00 0.00 0.00 3.46
737 891 0.971386 GTAGGAGGACGTGGTTGGAA 59.029 55.000 0.00 0.00 0.00 3.53
738 892 0.901580 GGTAGGAGGACGTGGTTGGA 60.902 60.000 0.00 0.00 0.00 3.53
739 893 0.903454 AGGTAGGAGGACGTGGTTGG 60.903 60.000 0.00 0.00 0.00 3.77
740 894 0.531200 GAGGTAGGAGGACGTGGTTG 59.469 60.000 0.00 0.00 0.00 3.77
741 895 0.964358 CGAGGTAGGAGGACGTGGTT 60.964 60.000 0.00 0.00 0.00 3.67
742 896 1.378250 CGAGGTAGGAGGACGTGGT 60.378 63.158 0.00 0.00 0.00 4.16
743 897 2.772691 GCGAGGTAGGAGGACGTGG 61.773 68.421 0.00 0.00 0.00 4.94
744 898 2.772691 GGCGAGGTAGGAGGACGTG 61.773 68.421 0.00 0.00 0.00 4.49
745 899 2.439883 GGCGAGGTAGGAGGACGT 60.440 66.667 0.00 0.00 0.00 4.34
746 900 3.217743 GGGCGAGGTAGGAGGACG 61.218 72.222 0.00 0.00 0.00 4.79
747 901 1.049289 AATGGGCGAGGTAGGAGGAC 61.049 60.000 0.00 0.00 0.00 3.85
748 902 0.326238 AAATGGGCGAGGTAGGAGGA 60.326 55.000 0.00 0.00 0.00 3.71
749 903 0.179045 CAAATGGGCGAGGTAGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
750 904 0.815615 GCAAATGGGCGAGGTAGGAG 60.816 60.000 0.00 0.00 0.00 3.69
751 905 1.223487 GCAAATGGGCGAGGTAGGA 59.777 57.895 0.00 0.00 0.00 2.94
752 906 3.827634 GCAAATGGGCGAGGTAGG 58.172 61.111 0.00 0.00 0.00 3.18
760 914 3.068729 GCCTTCTCCGCAAATGGGC 62.069 63.158 0.00 0.00 0.00 5.36
761 915 0.107214 TAGCCTTCTCCGCAAATGGG 60.107 55.000 0.00 0.00 0.00 4.00
762 916 1.017387 GTAGCCTTCTCCGCAAATGG 58.983 55.000 0.00 0.00 0.00 3.16
763 917 1.737838 TGTAGCCTTCTCCGCAAATG 58.262 50.000 0.00 0.00 0.00 2.32
764 918 2.717639 ATGTAGCCTTCTCCGCAAAT 57.282 45.000 0.00 0.00 0.00 2.32
765 919 2.235155 TGTATGTAGCCTTCTCCGCAAA 59.765 45.455 0.00 0.00 0.00 3.68
766 920 1.828595 TGTATGTAGCCTTCTCCGCAA 59.171 47.619 0.00 0.00 0.00 4.85
767 921 1.136305 GTGTATGTAGCCTTCTCCGCA 59.864 52.381 0.00 0.00 0.00 5.69
768 922 1.136305 TGTGTATGTAGCCTTCTCCGC 59.864 52.381 0.00 0.00 0.00 5.54
769 923 2.799917 GCTGTGTATGTAGCCTTCTCCG 60.800 54.545 0.00 0.00 33.89 4.63
770 924 2.799917 CGCTGTGTATGTAGCCTTCTCC 60.800 54.545 0.00 0.00 36.60 3.71
771 925 2.464865 CGCTGTGTATGTAGCCTTCTC 58.535 52.381 0.00 0.00 36.60 2.87
772 926 1.137086 CCGCTGTGTATGTAGCCTTCT 59.863 52.381 0.00 0.00 36.60 2.85
773 927 1.571919 CCGCTGTGTATGTAGCCTTC 58.428 55.000 0.00 0.00 36.60 3.46
774 928 0.462047 GCCGCTGTGTATGTAGCCTT 60.462 55.000 0.00 0.00 36.60 4.35
775 929 1.144057 GCCGCTGTGTATGTAGCCT 59.856 57.895 0.00 0.00 36.60 4.58
776 930 1.887707 GGCCGCTGTGTATGTAGCC 60.888 63.158 0.00 0.00 36.60 3.93
777 931 1.887707 GGGCCGCTGTGTATGTAGC 60.888 63.158 0.00 0.00 36.60 3.58
778 932 1.591594 CGGGCCGCTGTGTATGTAG 60.592 63.158 15.42 0.00 0.00 2.74
779 933 2.053277 TCGGGCCGCTGTGTATGTA 61.053 57.895 23.83 0.00 0.00 2.29
780 934 3.387091 TCGGGCCGCTGTGTATGT 61.387 61.111 23.83 0.00 0.00 2.29
781 935 2.890474 GTCGGGCCGCTGTGTATG 60.890 66.667 23.83 0.00 0.00 2.39
782 936 2.457743 TTTGTCGGGCCGCTGTGTAT 62.458 55.000 23.83 0.00 0.00 2.29
783 937 3.166490 TTTGTCGGGCCGCTGTGTA 62.166 57.895 23.83 0.00 0.00 2.90
784 938 4.555709 TTTGTCGGGCCGCTGTGT 62.556 61.111 23.83 0.00 0.00 3.72
785 939 3.726517 CTTTGTCGGGCCGCTGTG 61.727 66.667 23.83 6.21 0.00 3.66
875 1037 3.299977 GGTTTGGGTGGCGTTCCC 61.300 66.667 5.45 5.45 44.81 3.97
880 1042 2.750237 GCTAGGGTTTGGGTGGCG 60.750 66.667 0.00 0.00 0.00 5.69
907 1069 4.844998 AAGAAAGAAAGAAAGAGCAGGC 57.155 40.909 0.00 0.00 0.00 4.85
911 1073 5.048364 GGGGAGAAAGAAAGAAAGAAAGAGC 60.048 44.000 0.00 0.00 0.00 4.09
912 1074 6.303054 AGGGGAGAAAGAAAGAAAGAAAGAG 58.697 40.000 0.00 0.00 0.00 2.85
913 1075 6.101881 AGAGGGGAGAAAGAAAGAAAGAAAGA 59.898 38.462 0.00 0.00 0.00 2.52
914 1076 6.303054 AGAGGGGAGAAAGAAAGAAAGAAAG 58.697 40.000 0.00 0.00 0.00 2.62
915 1077 6.267492 AGAGGGGAGAAAGAAAGAAAGAAA 57.733 37.500 0.00 0.00 0.00 2.52
916 1078 5.511545 CGAGAGGGGAGAAAGAAAGAAAGAA 60.512 44.000 0.00 0.00 0.00 2.52
917 1079 4.021016 CGAGAGGGGAGAAAGAAAGAAAGA 60.021 45.833 0.00 0.00 0.00 2.52
918 1080 4.249661 CGAGAGGGGAGAAAGAAAGAAAG 58.750 47.826 0.00 0.00 0.00 2.62
919 1081 3.557264 GCGAGAGGGGAGAAAGAAAGAAA 60.557 47.826 0.00 0.00 0.00 2.52
942 1104 3.878519 GAGGAGGAGGCGACGACG 61.879 72.222 2.12 2.12 42.93 5.12
943 1105 3.519930 GGAGGAGGAGGCGACGAC 61.520 72.222 0.00 0.00 0.00 4.34
944 1106 3.700831 GAGGAGGAGGAGGCGACGA 62.701 68.421 0.00 0.00 0.00 4.20
1032 1195 3.360956 CTCCTTGCCCGCCATTTGC 62.361 63.158 0.00 0.00 0.00 3.68
1033 1196 2.713967 CCTCCTTGCCCGCCATTTG 61.714 63.158 0.00 0.00 0.00 2.32
1034 1197 2.362889 CCTCCTTGCCCGCCATTT 60.363 61.111 0.00 0.00 0.00 2.32
1225 1397 8.807948 TCTAGCAGCTATATACACATACATGA 57.192 34.615 1.54 0.00 0.00 3.07
1280 1452 2.183478 TGTGCATCAGATTCACCGTT 57.817 45.000 10.30 0.00 0.00 4.44
1282 1454 1.332686 CCATGTGCATCAGATTCACCG 59.667 52.381 10.30 2.50 0.00 4.94
1285 1457 1.341187 TGGCCATGTGCATCAGATTCA 60.341 47.619 0.00 0.00 43.89 2.57
1290 1462 0.968901 ACCTTGGCCATGTGCATCAG 60.969 55.000 6.09 0.00 43.89 2.90
1362 1536 2.825836 CGGGATGAAGGCAGCACC 60.826 66.667 0.00 0.00 39.61 5.01
1363 1537 2.109126 GTCGGGATGAAGGCAGCAC 61.109 63.158 0.00 0.00 30.33 4.40
1368 1542 1.207329 ACAGTAAGTCGGGATGAAGGC 59.793 52.381 0.00 0.00 0.00 4.35
1377 1551 1.100510 TCGGATCCACAGTAAGTCGG 58.899 55.000 13.41 0.00 0.00 4.79
1378 1552 2.094906 TGTTCGGATCCACAGTAAGTCG 60.095 50.000 13.41 0.00 0.00 4.18
1379 1553 3.587797 TGTTCGGATCCACAGTAAGTC 57.412 47.619 13.41 0.00 0.00 3.01
1384 1558 0.321653 GCCTTGTTCGGATCCACAGT 60.322 55.000 13.41 0.00 0.00 3.55
1387 1561 0.605319 TGTGCCTTGTTCGGATCCAC 60.605 55.000 13.41 3.70 0.00 4.02
1416 1590 6.257193 CAGTTTTAACTACACGAGACCAAACT 59.743 38.462 0.00 0.00 37.08 2.66
1424 1598 4.304110 TGAGCCAGTTTTAACTACACGAG 58.696 43.478 0.00 0.00 37.08 4.18
1437 1611 8.957466 GTATTAACCTAGAAAATTGAGCCAGTT 58.043 33.333 0.00 0.00 0.00 3.16
1463 1638 4.636206 GGAAAGCCCATTACTGTCAAGTAG 59.364 45.833 0.00 0.00 36.16 2.57
1464 1639 4.585879 GGAAAGCCCATTACTGTCAAGTA 58.414 43.478 0.00 0.00 34.69 2.24
1465 1640 3.421844 GGAAAGCCCATTACTGTCAAGT 58.578 45.455 0.00 0.00 36.20 3.16
1481 1656 6.391227 AACAGTGTCAAATAAGTGGGAAAG 57.609 37.500 0.00 0.00 0.00 2.62
1482 1657 9.226606 CTATAACAGTGTCAAATAAGTGGGAAA 57.773 33.333 0.00 0.00 0.00 3.13
1517 1692 7.664758 ACCTCTGTAACTTAATGTAAGACGTT 58.335 34.615 2.11 0.00 39.09 3.99
1548 1723 4.698276 CATACTACACTGTGCGTTTTGAC 58.302 43.478 7.90 0.00 0.00 3.18
1551 1726 3.399330 AGCATACTACACTGTGCGTTTT 58.601 40.909 7.90 0.00 42.18 2.43
1561 1736 9.534565 TCATTTTGAGAAGATAGCATACTACAC 57.465 33.333 0.00 0.00 0.00 2.90
1573 1748 7.176690 ACCGGTGTTTATTCATTTTGAGAAGAT 59.823 33.333 6.12 0.00 0.00 2.40
1594 1769 5.365895 AGAGGAAATACTAATTAGCACCGGT 59.634 40.000 12.54 0.00 0.00 5.28
1596 1771 6.750148 AGAGAGGAAATACTAATTAGCACCG 58.250 40.000 12.54 0.00 0.00 4.94
1630 1810 8.862325 TGCATTGGAATCTCTAAAAAGACTTA 57.138 30.769 0.00 0.00 0.00 2.24
1638 1818 6.946340 TGTAGTCTGCATTGGAATCTCTAAA 58.054 36.000 0.00 0.00 0.00 1.85
1654 1834 5.109210 TCATTTTGCTCCGTATGTAGTCTG 58.891 41.667 0.00 0.00 0.00 3.51
1660 1840 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1714 1894 7.154191 AGGGATTTCAACATGGACTACATAT 57.846 36.000 0.00 0.00 37.84 1.78
1736 1916 7.758076 CCGTTCCTAAATAAAAGCCTTTTTAGG 59.242 37.037 15.54 15.54 46.30 2.69
1801 1981 7.498443 AGGCTACAAACTAAAGAACGCTATAT 58.502 34.615 0.00 0.00 0.00 0.86
1802 1982 6.870769 AGGCTACAAACTAAAGAACGCTATA 58.129 36.000 0.00 0.00 0.00 1.31
1803 1983 5.731591 AGGCTACAAACTAAAGAACGCTAT 58.268 37.500 0.00 0.00 0.00 2.97
1804 1984 5.143376 AGGCTACAAACTAAAGAACGCTA 57.857 39.130 0.00 0.00 0.00 4.26
1805 1985 3.995048 GAGGCTACAAACTAAAGAACGCT 59.005 43.478 0.00 0.00 0.00 5.07
1806 1986 3.744426 TGAGGCTACAAACTAAAGAACGC 59.256 43.478 0.00 0.00 0.00 4.84
1807 1987 7.201530 CCTTATGAGGCTACAAACTAAAGAACG 60.202 40.741 0.00 0.00 35.94 3.95
1812 1992 7.067008 GCATTCCTTATGAGGCTACAAACTAAA 59.933 37.037 0.00 0.00 43.21 1.85
1826 2006 8.579850 AAAAATACTGTGAGCATTCCTTATGA 57.420 30.769 0.00 0.00 36.26 2.15
1830 2010 6.151817 GGAGAAAAATACTGTGAGCATTCCTT 59.848 38.462 0.00 0.00 0.00 3.36
2095 2275 1.550524 ACTTCAGGCATCTAACTGCGA 59.449 47.619 0.00 0.00 43.23 5.10
2176 2356 2.770164 AGGTATCAGAACACAGCCAC 57.230 50.000 0.00 0.00 0.00 5.01
2274 2454 2.106566 TGGAACTGCAAAAGCCAAAGA 58.893 42.857 0.00 0.00 0.00 2.52
2730 2912 9.021807 AGAAAAGGCATTCAGATGAATATATGG 57.978 33.333 7.71 0.00 42.41 2.74
2748 2930 5.230097 CGAAAGAAACAACTGAAGAAAAGGC 59.770 40.000 0.00 0.00 0.00 4.35
2857 3040 8.091449 TGCAACGACATCCCTTAAATTATTTTT 58.909 29.630 0.00 0.00 0.00 1.94
2884 3067 5.900123 ACTACTACTACATGATTCCTTGGCT 59.100 40.000 0.00 0.00 0.00 4.75
2890 3073 8.693625 AGTTACCAACTACTACTACATGATTCC 58.306 37.037 0.00 0.00 40.69 3.01
3225 3408 5.736951 AGTGAATTACTCTGTCAGAAGCT 57.263 39.130 3.67 0.00 33.17 3.74
3289 3472 7.264373 AGCTATGACTAAATGCATAAACCAC 57.736 36.000 0.00 0.00 0.00 4.16
3313 3496 4.968719 ACACTCCCACTCATACCATATCAA 59.031 41.667 0.00 0.00 0.00 2.57
3321 3504 4.694037 GGTTTGTAACACTCCCACTCATAC 59.306 45.833 0.00 0.00 0.00 2.39
3363 3546 1.429423 GCATGAAAGTGGCTACCGC 59.571 57.895 0.00 0.00 0.00 5.68
3364 3547 0.676466 TGGCATGAAAGTGGCTACCG 60.676 55.000 0.00 0.00 44.29 4.02
3490 3673 6.440328 ACCATCTTTTGCTGTTACCCATATTT 59.560 34.615 0.00 0.00 0.00 1.40
3904 4087 1.140852 TCACTACAACAGCTGCAGGTT 59.859 47.619 17.45 9.21 0.00 3.50
4644 4840 7.066163 CCATCTAACTCTTTGTTGTGCATATCA 59.934 37.037 0.00 0.00 39.55 2.15
4701 4897 2.032799 TGTGTCATCCGTTTGCAACTTC 59.967 45.455 0.00 0.00 0.00 3.01
4705 4901 0.306228 CGTGTGTCATCCGTTTGCAA 59.694 50.000 0.00 0.00 0.00 4.08
4713 4909 0.037697 TGCTGTACCGTGTGTCATCC 60.038 55.000 0.00 0.00 0.00 3.51
4962 5158 1.153249 ACCATAACGGCCACCATCG 60.153 57.895 2.24 0.00 39.03 3.84
5055 5251 0.817634 CAAAGCGGTCACCACCAGAA 60.818 55.000 0.00 0.00 44.02 3.02
5094 5290 2.185867 GCATAACGGTCCGGAGCA 59.814 61.111 31.39 14.37 0.00 4.26
5100 5296 0.802494 CACTTGGTGCATAACGGTCC 59.198 55.000 0.00 0.00 0.00 4.46
5188 5384 1.227380 CACTCCTGTCATAGGCGCC 60.227 63.158 21.89 21.89 46.87 6.53
5189 5385 1.227380 CCACTCCTGTCATAGGCGC 60.227 63.158 0.00 0.00 46.87 6.53
5190 5386 1.227380 GCCACTCCTGTCATAGGCG 60.227 63.158 0.00 0.00 46.87 5.52
5259 5455 1.144057 GTCCCTGTCATAGCCACCG 59.856 63.158 0.00 0.00 0.00 4.94
5408 5604 2.280797 TGCAGCAACAGGTCGGTC 60.281 61.111 0.00 0.00 0.00 4.79
5409 5605 2.281070 CTGCAGCAACAGGTCGGT 60.281 61.111 0.00 0.00 33.85 4.69
5410 5606 2.281070 ACTGCAGCAACAGGTCGG 60.281 61.111 15.27 0.00 42.21 4.79
5411 5607 2.661566 CGACTGCAGCAACAGGTCG 61.662 63.158 15.27 17.43 42.21 4.79
5449 5645 4.322650 GCCATGCCAAACTGGAAAGAATTA 60.323 41.667 0.00 0.00 40.96 1.40
5451 5647 2.027837 GCCATGCCAAACTGGAAAGAAT 60.028 45.455 0.00 0.00 40.96 2.40
5452 5648 1.344114 GCCATGCCAAACTGGAAAGAA 59.656 47.619 0.00 0.00 40.96 2.52
5524 5720 2.749621 CACTGCCCAAGGAGTAACATTC 59.250 50.000 0.00 0.00 0.00 2.67
5536 5732 2.303175 GTAAACTCAACCACTGCCCAA 58.697 47.619 0.00 0.00 0.00 4.12
5537 5733 1.477923 GGTAAACTCAACCACTGCCCA 60.478 52.381 0.00 0.00 36.96 5.36
5539 5735 1.244816 GGGTAAACTCAACCACTGCC 58.755 55.000 0.00 0.00 38.87 4.85
5541 5737 1.880027 GCTGGGTAAACTCAACCACTG 59.120 52.381 0.00 0.00 38.87 3.66
5542 5738 1.493022 TGCTGGGTAAACTCAACCACT 59.507 47.619 0.00 0.00 38.87 4.00
5543 5739 1.880027 CTGCTGGGTAAACTCAACCAC 59.120 52.381 0.00 0.00 38.87 4.16
5544 5740 1.771854 TCTGCTGGGTAAACTCAACCA 59.228 47.619 0.00 0.00 38.87 3.67
5545 5741 2.152016 GTCTGCTGGGTAAACTCAACC 58.848 52.381 0.00 0.00 36.19 3.77
5546 5742 2.808543 CAGTCTGCTGGGTAAACTCAAC 59.191 50.000 0.00 0.00 39.01 3.18
5547 5743 2.438021 ACAGTCTGCTGGGTAAACTCAA 59.562 45.455 0.00 0.00 46.62 3.02
5548 5744 2.047061 ACAGTCTGCTGGGTAAACTCA 58.953 47.619 0.00 0.00 46.62 3.41
5549 5745 2.841442 ACAGTCTGCTGGGTAAACTC 57.159 50.000 0.00 0.00 46.62 3.01
5602 5799 1.750778 CAAAGGTGACAACAGCCAACT 59.249 47.619 0.00 0.00 44.43 3.16
5604 5801 0.459489 GCAAAGGTGACAACAGCCAA 59.541 50.000 0.00 0.00 44.43 4.52
5610 5807 2.229792 TCATCCAGCAAAGGTGACAAC 58.770 47.619 0.00 0.00 32.22 3.32
5611 5808 2.655090 TCATCCAGCAAAGGTGACAA 57.345 45.000 0.00 0.00 32.22 3.18
5612 5809 2.439409 CATCATCCAGCAAAGGTGACA 58.561 47.619 0.00 0.00 32.22 3.58
5613 5810 1.747355 CCATCATCCAGCAAAGGTGAC 59.253 52.381 0.00 0.00 32.22 3.67
5614 5811 1.355381 ACCATCATCCAGCAAAGGTGA 59.645 47.619 0.00 0.00 32.22 4.02
5615 5812 1.843368 ACCATCATCCAGCAAAGGTG 58.157 50.000 0.00 0.00 0.00 4.00
5626 5823 4.576053 TGCAGCAGTACATAAACCATCATC 59.424 41.667 0.00 0.00 0.00 2.92
5644 5841 6.093219 AGTTCGGATTGATAATATCATGCAGC 59.907 38.462 3.54 0.00 39.39 5.25
5664 5862 3.624861 AGCAGCAGGATTTCATAAGTTCG 59.375 43.478 0.00 0.00 0.00 3.95
5699 5897 2.366533 CAGAGCAGCAGGAATTCACAT 58.633 47.619 7.93 0.00 0.00 3.21
5701 5899 0.450983 GCAGAGCAGCAGGAATTCAC 59.549 55.000 7.93 0.00 0.00 3.18
5706 5904 3.630013 ACCGCAGAGCAGCAGGAA 61.630 61.111 0.00 0.00 34.07 3.36
5721 5919 2.502295 GAGCCATCAGATTCATCCACC 58.498 52.381 0.00 0.00 0.00 4.61
5798 5996 1.068753 CCAGGTCATAGCAGGCTCG 59.931 63.158 0.00 0.00 0.00 5.03
5830 6028 1.073763 AGCAACCACATTCAGTAGCCA 59.926 47.619 0.00 0.00 0.00 4.75
5848 6053 2.294233 TGAAATCCTGCACAAGTTCAGC 59.706 45.455 3.13 0.00 0.00 4.26
5895 6100 2.493675 TCACTCTTCTCCAAGTCATCCG 59.506 50.000 0.00 0.00 0.00 4.18
5897 6102 3.259374 TGGTCACTCTTCTCCAAGTCATC 59.741 47.826 0.00 0.00 0.00 2.92
5924 6129 2.854963 TGCTCTGTCTCAAAGCAACAT 58.145 42.857 0.00 0.00 42.71 2.71
5930 6135 5.624344 AAACATGATGCTCTGTCTCAAAG 57.376 39.130 0.00 0.00 0.00 2.77
5931 6136 5.278610 CCAAAACATGATGCTCTGTCTCAAA 60.279 40.000 0.00 0.00 0.00 2.69
5934 6139 3.427233 GCCAAAACATGATGCTCTGTCTC 60.427 47.826 0.00 0.00 0.00 3.36
5950 6155 0.316841 GACAAGCCCATTCGCCAAAA 59.683 50.000 0.00 0.00 0.00 2.44
5955 6160 0.960364 TGGAAGACAAGCCCATTCGC 60.960 55.000 0.00 0.00 0.00 4.70
5967 6172 6.715344 TGTAAATAACACGTGATGGAAGAC 57.285 37.500 25.01 11.72 31.43 3.01
5968 6173 7.731882 TTTGTAAATAACACGTGATGGAAGA 57.268 32.000 25.01 0.00 38.00 2.87
5969 6174 8.020819 ACATTTGTAAATAACACGTGATGGAAG 58.979 33.333 25.01 0.00 38.00 3.46
5971 6176 7.441890 ACATTTGTAAATAACACGTGATGGA 57.558 32.000 25.01 4.15 38.00 3.41
6040 6282 4.814234 ACTCGAGTACATTTTTCACAGCAA 59.186 37.500 18.46 0.00 0.00 3.91
6086 6328 9.261318 GTGTTTTGAATCAAAAAGTAAGTTTGC 57.739 29.630 21.03 6.99 43.50 3.68
6108 6350 7.434013 GTGAATCCGTAAAACTTCAAATGTGTT 59.566 33.333 0.00 0.00 30.06 3.32
6110 6352 6.362283 GGTGAATCCGTAAAACTTCAAATGTG 59.638 38.462 0.00 0.00 30.06 3.21
6112 6354 6.442952 TGGTGAATCCGTAAAACTTCAAATG 58.557 36.000 0.00 0.00 39.52 2.32
6113 6355 6.642707 TGGTGAATCCGTAAAACTTCAAAT 57.357 33.333 0.00 0.00 39.52 2.32
6117 6655 4.412207 GCATGGTGAATCCGTAAAACTTC 58.588 43.478 0.00 0.00 39.52 3.01
6127 6665 2.425143 TTCAGAGGCATGGTGAATCC 57.575 50.000 0.00 0.00 0.00 3.01
6153 7042 4.501743 CCCTCTCGGAAGTTATAAAGAGGC 60.502 50.000 17.82 0.00 45.57 4.70
6156 7045 3.067742 CGCCCTCTCGGAAGTTATAAAGA 59.932 47.826 0.00 0.00 0.00 2.52
6158 7047 2.482490 GCGCCCTCTCGGAAGTTATAAA 60.482 50.000 0.00 0.00 0.00 1.40
6159 7048 1.068127 GCGCCCTCTCGGAAGTTATAA 59.932 52.381 0.00 0.00 0.00 0.98
6161 7050 1.442148 GCGCCCTCTCGGAAGTTAT 59.558 57.895 0.00 0.00 0.00 1.89
6162 7051 2.890371 GCGCCCTCTCGGAAGTTA 59.110 61.111 0.00 0.00 0.00 2.24
6170 9457 3.064987 TTCTACAGCGCGCCCTCTC 62.065 63.158 30.33 0.00 0.00 3.20
6177 9464 2.158959 CCTTCGGTTCTACAGCGCG 61.159 63.158 0.00 0.00 46.41 6.86
6180 9467 0.171903 TACGCCTTCGGTTCTACAGC 59.828 55.000 0.00 0.00 40.69 4.40
6186 9474 0.100146 ATCTCGTACGCCTTCGGTTC 59.900 55.000 11.24 0.00 40.69 3.62
6198 9486 3.994392 GGCAACAAGAGTTCAATCTCGTA 59.006 43.478 0.00 0.00 39.21 3.43
6200 9488 2.159787 CGGCAACAAGAGTTCAATCTCG 60.160 50.000 0.00 0.00 39.21 4.04
6202 9490 2.808543 GACGGCAACAAGAGTTCAATCT 59.191 45.455 0.00 0.00 35.28 2.40
6203 9491 2.411547 CGACGGCAACAAGAGTTCAATC 60.412 50.000 0.00 0.00 35.28 2.67
6207 9509 1.204312 GCGACGGCAACAAGAGTTC 59.796 57.895 0.00 0.00 39.62 3.01
6246 9548 0.453282 CGCATGAACTCTTGTTGCCG 60.453 55.000 0.00 0.00 36.39 5.69
6247 9549 0.874390 TCGCATGAACTCTTGTTGCC 59.126 50.000 0.00 0.00 36.39 4.52
6250 9552 1.129251 CGCATCGCATGAACTCTTGTT 59.871 47.619 0.00 0.00 39.42 2.83
6251 9553 0.723414 CGCATCGCATGAACTCTTGT 59.277 50.000 0.00 0.00 0.00 3.16
6253 9555 1.284657 CTCGCATCGCATGAACTCTT 58.715 50.000 0.00 0.00 0.00 2.85
6254 9556 0.529337 CCTCGCATCGCATGAACTCT 60.529 55.000 0.00 0.00 0.00 3.24
6255 9557 0.528466 TCCTCGCATCGCATGAACTC 60.528 55.000 0.00 0.00 0.00 3.01
6256 9558 0.807667 GTCCTCGCATCGCATGAACT 60.808 55.000 0.00 0.00 0.00 3.01
6257 9559 1.638467 GTCCTCGCATCGCATGAAC 59.362 57.895 0.00 0.00 0.00 3.18
6258 9560 1.878069 CGTCCTCGCATCGCATGAA 60.878 57.895 0.00 0.00 0.00 2.57
6259 9561 2.278792 CGTCCTCGCATCGCATGA 60.279 61.111 0.00 0.00 0.00 3.07
6269 9571 4.907034 ATAGTGCGCGCGTCCTCG 62.907 66.667 32.35 3.26 40.37 4.63
6270 9572 3.323136 CATAGTGCGCGCGTCCTC 61.323 66.667 32.35 15.24 0.00 3.71
6271 9573 4.873129 CCATAGTGCGCGCGTCCT 62.873 66.667 32.35 26.90 0.00 3.85
6273 9575 2.658593 ATCCATAGTGCGCGCGTC 60.659 61.111 32.35 23.18 0.00 5.19
6274 9576 2.961721 CATCCATAGTGCGCGCGT 60.962 61.111 32.35 18.96 0.00 6.01
6275 9577 4.360027 GCATCCATAGTGCGCGCG 62.360 66.667 28.44 28.44 32.29 6.86
6280 9582 0.941463 CGTCTCCGCATCCATAGTGC 60.941 60.000 0.00 0.00 39.18 4.40
6281 9583 0.319040 CCGTCTCCGCATCCATAGTG 60.319 60.000 0.00 0.00 0.00 2.74
6282 9584 2.041976 CCGTCTCCGCATCCATAGT 58.958 57.895 0.00 0.00 0.00 2.12
6284 9586 2.734591 GCCGTCTCCGCATCCATA 59.265 61.111 0.00 0.00 0.00 2.74
6285 9587 4.592192 CGCCGTCTCCGCATCCAT 62.592 66.667 0.00 0.00 0.00 3.41
6288 9590 4.492160 TGTCGCCGTCTCCGCATC 62.492 66.667 0.00 0.00 0.00 3.91
6289 9591 4.796231 GTGTCGCCGTCTCCGCAT 62.796 66.667 0.00 0.00 0.00 4.73
6297 9599 3.735029 GGAGAGACGTGTCGCCGT 61.735 66.667 19.21 0.00 45.18 5.68
6298 9600 4.477975 GGGAGAGACGTGTCGCCG 62.478 72.222 25.27 0.00 34.09 6.46
6300 9602 2.179517 CAGGGAGAGACGTGTCGC 59.820 66.667 7.95 7.95 34.09 5.19
6301 9603 1.210413 CACAGGGAGAGACGTGTCG 59.790 63.158 7.10 0.00 37.36 4.35
6302 9604 1.080434 GCACAGGGAGAGACGTGTC 60.080 63.158 4.17 4.17 37.36 3.67
6303 9605 2.920645 CGCACAGGGAGAGACGTGT 61.921 63.158 0.00 0.00 39.78 4.49
6304 9606 2.126307 CGCACAGGGAGAGACGTG 60.126 66.667 0.00 0.00 0.00 4.49
6305 9607 4.057428 GCGCACAGGGAGAGACGT 62.057 66.667 0.30 0.00 0.00 4.34
6306 9608 4.056125 TGCGCACAGGGAGAGACG 62.056 66.667 5.66 0.00 0.00 4.18
6307 9609 2.433318 GTGCGCACAGGGAGAGAC 60.433 66.667 34.52 3.30 0.00 3.36
6308 9610 4.056125 CGTGCGCACAGGGAGAGA 62.056 66.667 37.03 0.00 0.00 3.10
6309 9611 4.363990 ACGTGCGCACAGGGAGAG 62.364 66.667 37.03 22.26 35.97 3.20
6310 9612 4.357947 GACGTGCGCACAGGGAGA 62.358 66.667 37.03 0.00 35.97 3.71
6322 9624 2.583319 ATGCGATGCGAGGACGTG 60.583 61.111 0.00 0.00 41.98 4.49
6323 9625 2.583319 CATGCGATGCGAGGACGT 60.583 61.111 0.00 0.00 41.98 4.34
6347 9649 4.329392 GGGAACAAGGTTTCGGATAAGAA 58.671 43.478 0.00 0.00 0.00 2.52
6356 9658 1.520494 GAGACGGGGAACAAGGTTTC 58.480 55.000 0.00 0.00 0.00 2.78
6364 9666 0.691332 AAGAAAGGGAGACGGGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
6375 9677 3.456380 TCAATTGGGAGGAAGAAAGGG 57.544 47.619 5.42 0.00 0.00 3.95
6385 9687 0.832626 GGGCCCATTTCAATTGGGAG 59.167 55.000 19.95 0.00 45.50 4.30
6386 9688 0.620121 GGGGCCCATTTCAATTGGGA 60.620 55.000 26.86 0.00 45.50 4.37
6387 9689 1.914475 GGGGCCCATTTCAATTGGG 59.086 57.895 26.86 12.47 45.43 4.12
6389 9691 1.153389 GCGGGGCCCATTTCAATTG 60.153 57.895 26.86 3.34 0.00 2.32
6390 9692 2.366393 GGCGGGGCCCATTTCAATT 61.366 57.895 26.86 0.00 44.06 2.32
6391 9693 2.763710 GGCGGGGCCCATTTCAAT 60.764 61.111 26.86 0.00 44.06 2.57
6413 9715 0.756903 TTCCTTGTATAGCGGGAGGC 59.243 55.000 0.00 0.00 44.05 4.70
6414 9716 2.632996 TCATTCCTTGTATAGCGGGAGG 59.367 50.000 0.00 0.00 0.00 4.30
6415 9717 3.069586 TGTCATTCCTTGTATAGCGGGAG 59.930 47.826 0.00 0.00 0.00 4.30
6416 9718 3.035363 TGTCATTCCTTGTATAGCGGGA 58.965 45.455 0.00 0.00 0.00 5.14
6429 9731 8.787852 GGATTAGGATTATTTGTCTGTCATTCC 58.212 37.037 0.00 0.00 0.00 3.01
6430 9732 9.342308 TGGATTAGGATTATTTGTCTGTCATTC 57.658 33.333 0.00 0.00 0.00 2.67
6431 9733 9.125026 GTGGATTAGGATTATTTGTCTGTCATT 57.875 33.333 0.00 0.00 0.00 2.57
6433 9735 7.861629 AGTGGATTAGGATTATTTGTCTGTCA 58.138 34.615 0.00 0.00 0.00 3.58
6434 9736 7.442666 GGAGTGGATTAGGATTATTTGTCTGTC 59.557 40.741 0.00 0.00 0.00 3.51
6435 9737 7.283329 GGAGTGGATTAGGATTATTTGTCTGT 58.717 38.462 0.00 0.00 0.00 3.41
6436 9738 6.425114 CGGAGTGGATTAGGATTATTTGTCTG 59.575 42.308 0.00 0.00 0.00 3.51
6437 9739 6.525629 CGGAGTGGATTAGGATTATTTGTCT 58.474 40.000 0.00 0.00 0.00 3.41
6438 9740 5.179555 GCGGAGTGGATTAGGATTATTTGTC 59.820 44.000 0.00 0.00 0.00 3.18
6440 9742 4.455877 GGCGGAGTGGATTAGGATTATTTG 59.544 45.833 0.00 0.00 0.00 2.32
6441 9743 4.351111 AGGCGGAGTGGATTAGGATTATTT 59.649 41.667 0.00 0.00 0.00 1.40
6442 9744 3.910627 AGGCGGAGTGGATTAGGATTATT 59.089 43.478 0.00 0.00 0.00 1.40
6443 9745 3.521727 AGGCGGAGTGGATTAGGATTAT 58.478 45.455 0.00 0.00 0.00 1.28
6444 9746 2.972348 AGGCGGAGTGGATTAGGATTA 58.028 47.619 0.00 0.00 0.00 1.75
6445 9747 1.807814 AGGCGGAGTGGATTAGGATT 58.192 50.000 0.00 0.00 0.00 3.01
6446 9748 1.807814 AAGGCGGAGTGGATTAGGAT 58.192 50.000 0.00 0.00 0.00 3.24
6447 9749 1.580059 AAAGGCGGAGTGGATTAGGA 58.420 50.000 0.00 0.00 0.00 2.94
6448 9750 2.017049 CAAAAGGCGGAGTGGATTAGG 58.983 52.381 0.00 0.00 0.00 2.69
6449 9751 2.711542 ACAAAAGGCGGAGTGGATTAG 58.288 47.619 0.00 0.00 0.00 1.73
6484 9786 1.303799 CCTGCCTGAGCACACATCAC 61.304 60.000 0.00 0.00 46.52 3.06
6485 9787 1.002990 CCTGCCTGAGCACACATCA 60.003 57.895 0.00 0.00 46.52 3.07
6486 9788 0.607489 AACCTGCCTGAGCACACATC 60.607 55.000 0.00 0.00 46.52 3.06
6487 9789 0.178981 AAACCTGCCTGAGCACACAT 60.179 50.000 0.00 0.00 46.52 3.21
6488 9790 1.102809 CAAACCTGCCTGAGCACACA 61.103 55.000 0.00 0.00 46.52 3.72
6489 9791 1.656441 CAAACCTGCCTGAGCACAC 59.344 57.895 0.00 0.00 46.52 3.82
6490 9792 2.195567 GCAAACCTGCCTGAGCACA 61.196 57.895 0.00 0.00 46.52 4.57
6491 9793 2.647297 GCAAACCTGCCTGAGCAC 59.353 61.111 0.00 0.00 46.52 4.40
6518 9820 1.404047 GCCCCCAATTTCATGTGAACG 60.404 52.381 0.00 0.00 33.13 3.95
6531 9833 4.652131 ACGTGAATGCGCCCCCAA 62.652 61.111 4.18 0.00 34.88 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.