Multiple sequence alignment - TraesCS4B01G026300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G026300 chr4B 100.000 3523 0 0 4680 8202 19748478 19744956 0.000000e+00 6506.0
1 TraesCS4B01G026300 chr4B 100.000 3315 0 0 921 4235 19752237 19748923 0.000000e+00 6122.0
2 TraesCS4B01G026300 chr4B 100.000 531 0 0 1 531 19753157 19752627 0.000000e+00 981.0
3 TraesCS4B01G026300 chr4A 94.972 2645 92 16 1180 3796 593341928 593344559 0.000000e+00 4109.0
4 TraesCS4B01G026300 chr4A 93.996 1349 50 12 5107 6424 593345575 593346923 0.000000e+00 2013.0
5 TraesCS4B01G026300 chr4A 92.787 1331 35 15 6800 8100 593347106 593348405 0.000000e+00 1869.0
6 TraesCS4B01G026300 chr4A 93.878 392 23 1 3844 4235 593344556 593344946 2.550000e-164 590.0
7 TraesCS4B01G026300 chr4A 92.073 328 8 10 4760 5076 593345258 593345578 5.840000e-121 446.0
8 TraesCS4B01G026300 chr4A 93.617 188 12 0 6458 6645 593346921 593347108 1.740000e-71 281.0
9 TraesCS4B01G026300 chr4A 94.286 35 2 0 6073 6107 520683023 520683057 4.000000e-03 54.7
10 TraesCS4B01G026300 chr4D 94.909 2416 77 14 921 3301 10265816 10263412 0.000000e+00 3738.0
11 TraesCS4B01G026300 chr4D 93.675 1929 80 16 4740 6645 10262184 10260275 0.000000e+00 2848.0
12 TraesCS4B01G026300 chr4D 93.903 1427 37 14 6800 8202 10260277 10258877 0.000000e+00 2108.0
13 TraesCS4B01G026300 chr4D 93.474 521 30 2 3717 4235 10263147 10262629 0.000000e+00 771.0
14 TraesCS4B01G026300 chr4D 93.382 272 13 2 3422 3688 10263410 10263139 1.660000e-106 398.0
15 TraesCS4B01G026300 chr4D 92.079 202 8 7 307 506 10266496 10266301 2.250000e-70 278.0
16 TraesCS4B01G026300 chr4D 91.935 186 7 6 6629 6806 404108562 404108747 3.800000e-63 254.0
17 TraesCS4B01G026300 chr6D 91.818 220 13 3 2 221 308594332 308594546 1.340000e-77 302.0
18 TraesCS4B01G026300 chr6D 90.952 210 15 2 13 221 455563799 455563593 6.270000e-71 279.0
19 TraesCS4B01G026300 chr6D 94.767 172 3 4 6644 6809 271602774 271602945 6.310000e-66 263.0
20 TraesCS4B01G026300 chr6D 97.115 104 3 0 3087 3190 267532929 267532826 8.460000e-40 176.0
21 TraesCS4B01G026300 chr6D 96.154 104 4 0 3087 3190 296696672 296696775 3.940000e-38 171.0
22 TraesCS4B01G026300 chr3D 91.667 216 15 2 4 219 427078249 427078461 6.220000e-76 296.0
23 TraesCS4B01G026300 chr3D 80.556 108 19 1 6335 6440 149736869 149736976 1.900000e-11 82.4
24 TraesCS4B01G026300 chr3D 100.000 28 0 0 6073 6100 47604206 47604179 1.500000e-02 52.8
25 TraesCS4B01G026300 chr1A 90.950 221 15 3 2 221 586724605 586724821 8.050000e-75 292.0
26 TraesCS4B01G026300 chr1A 90.984 122 10 1 3087 3207 64565498 64565619 6.590000e-36 163.0
27 TraesCS4B01G026300 chr1A 97.222 36 1 0 6072 6107 19817989 19817954 2.470000e-05 62.1
28 TraesCS4B01G026300 chr2D 90.541 222 17 3 1 221 546582853 546583071 2.900000e-74 291.0
29 TraesCS4B01G026300 chr2D 90.000 220 19 2 2 221 566759576 566759792 1.740000e-71 281.0
30 TraesCS4B01G026300 chr2D 92.857 42 2 1 215 255 546583104 546583145 8.890000e-05 60.2
31 TraesCS4B01G026300 chr2A 90.411 219 18 2 3 221 674504722 674504507 1.350000e-72 285.0
32 TraesCS4B01G026300 chr2A 95.882 170 1 2 6640 6803 746756986 746757155 3.770000e-68 270.0
33 TraesCS4B01G026300 chr2A 94.220 173 6 2 6644 6812 310408098 310407926 2.270000e-65 261.0
34 TraesCS4B01G026300 chr2A 100.000 29 0 0 224 252 272150881 272150909 4.000000e-03 54.7
35 TraesCS4B01G026300 chr6A 90.610 213 16 2 10 221 602451031 602450822 6.270000e-71 279.0
36 TraesCS4B01G026300 chr6A 97.115 104 3 0 3087 3190 101300231 101300334 8.460000e-40 176.0
37 TraesCS4B01G026300 chr6A 97.115 104 3 0 3087 3190 381088822 381088719 8.460000e-40 176.0
38 TraesCS4B01G026300 chr6A 100.000 30 0 0 6073 6102 182322059 182322088 1.000000e-03 56.5
39 TraesCS4B01G026300 chr3B 89.908 218 19 2 4 221 237637155 237637369 2.250000e-70 278.0
40 TraesCS4B01G026300 chr3B 100.000 38 0 0 6073 6110 29598897 29598934 4.110000e-08 71.3
41 TraesCS4B01G026300 chr5D 95.322 171 2 2 6638 6802 274578182 274578012 4.880000e-67 267.0
42 TraesCS4B01G026300 chr2B 94.828 174 2 3 6644 6811 174794822 174794994 1.760000e-66 265.0
43 TraesCS4B01G026300 chr2B 96.875 32 1 0 224 255 422777727 422777696 4.000000e-03 54.7
44 TraesCS4B01G026300 chr2B 100.000 29 0 0 224 252 492355987 492356015 4.000000e-03 54.7
45 TraesCS4B01G026300 chr2B 94.286 35 2 0 6073 6107 604158058 604158024 4.000000e-03 54.7
46 TraesCS4B01G026300 chr7D 94.253 174 4 2 6636 6803 535309862 535309689 2.270000e-65 261.0
47 TraesCS4B01G026300 chr5B 91.414 198 6 7 6614 6804 591647050 591646857 2.270000e-65 261.0
48 TraesCS4B01G026300 chr5B 93.043 115 6 2 3087 3199 202220598 202220712 5.090000e-37 167.0
49 TraesCS4B01G026300 chr6B 91.848 184 9 2 6629 6806 568047051 568047234 1.370000e-62 252.0
50 TraesCS4B01G026300 chr1B 93.750 112 6 1 3087 3197 39380645 39380756 5.090000e-37 167.0
51 TraesCS4B01G026300 chr7A 100.000 33 0 0 6072 6104 355696623 355696591 2.470000e-05 62.1
52 TraesCS4B01G026300 chrUn 100.000 29 0 0 7631 7659 258472451 258472423 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G026300 chr4B 19744956 19753157 8201 True 4536.333333 6506 100.000000 1 8202 3 chr4B.!!$R1 8201
1 TraesCS4B01G026300 chr4A 593341928 593348405 6477 False 1551.333333 4109 93.553833 1180 8100 6 chr4A.!!$F2 6920
2 TraesCS4B01G026300 chr4D 10258877 10266496 7619 True 1690.166667 3738 93.570333 307 8202 6 chr4D.!!$R1 7895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.033796 CACCACATCCAGAAGGCCAT 60.034 55.000 5.01 0.00 33.74 4.40 F
1347 1419 0.324738 TCTCCGACTCCCTCAAGCAT 60.325 55.000 0.00 0.00 0.00 3.79 F
2187 2259 0.038709 GCATGGTGCCGCTGTTTAAA 60.039 50.000 0.00 0.00 37.42 1.52 F
3546 3655 1.089920 GACTGTGGGCTGTTAGCATG 58.910 55.000 2.99 0.00 44.75 4.06 F
4074 4183 0.601046 CAAGTTGACCTGCTCTGCGA 60.601 55.000 0.00 0.00 0.00 5.10 F
4080 4191 0.811915 GACCTGCTCTGCGAGACTTA 59.188 55.000 9.32 0.00 0.00 2.24 F
4226 4337 1.030457 ATTGCTAGGCATCTGCTTGC 58.970 50.000 1.70 5.15 38.76 4.01 F
5026 5148 2.048601 TGGGGTTTTGACGGAGACTTA 58.951 47.619 0.00 0.00 0.00 2.24 F
6233 6392 0.662374 GCTGCATGCATAATCACGGC 60.662 55.000 22.97 14.64 42.31 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1716 1.301479 GACCTTGGTGTCGGTGTCC 60.301 63.158 0.00 0.00 32.62 4.02 R
2906 2983 0.685458 ATAGGCTGGCAGCTTTTGGG 60.685 55.000 35.73 0.00 41.99 4.12 R
3995 4104 0.326264 GACAAGCCCTCACATGGACT 59.674 55.000 0.00 0.00 0.00 3.85 R
5005 5127 1.064825 AGTCTCCGTCAAAACCCCAT 58.935 50.000 0.00 0.00 0.00 4.00 R
5287 5423 1.067000 CATTCCAATTTGGCGGCTCAA 60.067 47.619 11.43 3.31 37.47 3.02 R
5878 6016 2.543777 TGTACCACTGCCACTTCTTC 57.456 50.000 0.00 0.00 0.00 2.87 R
6085 6228 1.304547 CACGGGCCCAATAAACCCA 60.305 57.895 24.92 0.00 44.49 4.51 R
6512 6673 0.107654 ATGAAACGGTAGGGAGCAGC 60.108 55.000 0.00 0.00 0.00 5.25 R
7805 7972 0.255890 AGCAACAAGACTGTGGTGGT 59.744 50.000 2.74 2.74 41.99 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.618890 TCTCCACTCCTATAAAAATCTGAATTG 57.381 33.333 0.00 0.00 0.00 2.32
31 32 8.752005 TCCACTCCTATAAAAATCTGAATTGG 57.248 34.615 0.00 0.00 0.00 3.16
32 33 8.336235 TCCACTCCTATAAAAATCTGAATTGGT 58.664 33.333 0.00 0.00 0.00 3.67
33 34 8.408601 CCACTCCTATAAAAATCTGAATTGGTG 58.591 37.037 0.00 0.00 0.00 4.17
34 35 9.177608 CACTCCTATAAAAATCTGAATTGGTGA 57.822 33.333 0.00 0.00 0.00 4.02
35 36 9.927081 ACTCCTATAAAAATCTGAATTGGTGAT 57.073 29.630 0.00 0.00 0.00 3.06
43 44 7.722949 AAATCTGAATTGGTGATAATGGTGT 57.277 32.000 0.00 0.00 0.00 4.16
44 45 6.704289 ATCTGAATTGGTGATAATGGTGTG 57.296 37.500 0.00 0.00 0.00 3.82
45 46 4.398988 TCTGAATTGGTGATAATGGTGTGC 59.601 41.667 0.00 0.00 0.00 4.57
46 47 3.446873 TGAATTGGTGATAATGGTGTGCC 59.553 43.478 0.00 0.00 0.00 5.01
47 48 2.897271 TTGGTGATAATGGTGTGCCT 57.103 45.000 0.00 0.00 35.27 4.75
48 49 2.897271 TGGTGATAATGGTGTGCCTT 57.103 45.000 0.00 0.00 35.27 4.35
49 50 2.722094 TGGTGATAATGGTGTGCCTTC 58.278 47.619 0.00 0.00 35.27 3.46
50 51 2.024414 GGTGATAATGGTGTGCCTTCC 58.976 52.381 0.00 0.00 35.27 3.46
51 52 2.620367 GGTGATAATGGTGTGCCTTCCA 60.620 50.000 0.00 0.00 38.14 3.53
52 53 3.290710 GTGATAATGGTGTGCCTTCCAT 58.709 45.455 0.00 0.00 45.06 3.41
53 54 3.316308 GTGATAATGGTGTGCCTTCCATC 59.684 47.826 4.54 0.00 42.73 3.51
54 55 3.202818 TGATAATGGTGTGCCTTCCATCT 59.797 43.478 4.54 0.00 42.73 2.90
55 56 2.610438 AATGGTGTGCCTTCCATCTT 57.390 45.000 4.54 0.00 42.73 2.40
56 57 2.610438 ATGGTGTGCCTTCCATCTTT 57.390 45.000 0.00 0.00 39.92 2.52
57 58 1.909700 TGGTGTGCCTTCCATCTTTC 58.090 50.000 0.00 0.00 35.27 2.62
58 59 1.144708 TGGTGTGCCTTCCATCTTTCA 59.855 47.619 0.00 0.00 35.27 2.69
59 60 2.225091 TGGTGTGCCTTCCATCTTTCAT 60.225 45.455 0.00 0.00 35.27 2.57
60 61 2.424956 GGTGTGCCTTCCATCTTTCATC 59.575 50.000 0.00 0.00 0.00 2.92
61 62 3.084039 GTGTGCCTTCCATCTTTCATCA 58.916 45.455 0.00 0.00 0.00 3.07
62 63 3.507233 GTGTGCCTTCCATCTTTCATCAA 59.493 43.478 0.00 0.00 0.00 2.57
63 64 4.159135 GTGTGCCTTCCATCTTTCATCAAT 59.841 41.667 0.00 0.00 0.00 2.57
64 65 5.357878 GTGTGCCTTCCATCTTTCATCAATA 59.642 40.000 0.00 0.00 0.00 1.90
65 66 5.591472 TGTGCCTTCCATCTTTCATCAATAG 59.409 40.000 0.00 0.00 0.00 1.73
66 67 4.581824 TGCCTTCCATCTTTCATCAATAGC 59.418 41.667 0.00 0.00 0.00 2.97
67 68 4.022503 GCCTTCCATCTTTCATCAATAGCC 60.023 45.833 0.00 0.00 0.00 3.93
68 69 4.214971 CCTTCCATCTTTCATCAATAGCCG 59.785 45.833 0.00 0.00 0.00 5.52
69 70 4.422073 TCCATCTTTCATCAATAGCCGT 57.578 40.909 0.00 0.00 0.00 5.68
70 71 4.380531 TCCATCTTTCATCAATAGCCGTC 58.619 43.478 0.00 0.00 0.00 4.79
71 72 3.185188 CCATCTTTCATCAATAGCCGTCG 59.815 47.826 0.00 0.00 0.00 5.12
72 73 2.821546 TCTTTCATCAATAGCCGTCGG 58.178 47.619 6.99 6.99 0.00 4.79
73 74 2.429250 TCTTTCATCAATAGCCGTCGGA 59.571 45.455 17.49 0.00 0.00 4.55
74 75 3.069586 TCTTTCATCAATAGCCGTCGGAT 59.930 43.478 17.49 12.48 0.00 4.18
75 76 2.724977 TCATCAATAGCCGTCGGATC 57.275 50.000 17.49 0.00 0.00 3.36
76 77 2.239400 TCATCAATAGCCGTCGGATCT 58.761 47.619 17.49 6.01 0.00 2.75
77 78 3.418047 TCATCAATAGCCGTCGGATCTA 58.582 45.455 17.49 8.33 0.00 1.98
78 79 3.440522 TCATCAATAGCCGTCGGATCTAG 59.559 47.826 17.49 1.76 0.00 2.43
79 80 3.136009 TCAATAGCCGTCGGATCTAGA 57.864 47.619 17.49 4.45 0.00 2.43
80 81 3.687125 TCAATAGCCGTCGGATCTAGAT 58.313 45.455 17.49 4.47 0.00 1.98
81 82 3.690139 TCAATAGCCGTCGGATCTAGATC 59.310 47.826 22.41 22.41 37.11 2.75
82 83 3.637911 ATAGCCGTCGGATCTAGATCT 57.362 47.619 27.65 12.03 37.92 2.75
83 84 1.529226 AGCCGTCGGATCTAGATCTG 58.471 55.000 28.88 28.88 43.79 2.90
88 89 2.256117 TCGGATCTAGATCTGACGCA 57.744 50.000 31.88 16.03 45.50 5.24
89 90 2.784347 TCGGATCTAGATCTGACGCAT 58.216 47.619 31.88 0.00 45.50 4.73
90 91 3.939066 TCGGATCTAGATCTGACGCATA 58.061 45.455 31.88 15.08 45.50 3.14
91 92 3.685272 TCGGATCTAGATCTGACGCATAC 59.315 47.826 31.88 13.12 45.50 2.39
92 93 3.437049 CGGATCTAGATCTGACGCATACA 59.563 47.826 30.36 0.00 44.92 2.29
93 94 4.083271 CGGATCTAGATCTGACGCATACAA 60.083 45.833 30.36 0.00 44.92 2.41
94 95 5.562890 CGGATCTAGATCTGACGCATACAAA 60.563 44.000 30.36 0.00 44.92 2.83
95 96 5.861251 GGATCTAGATCTGACGCATACAAAG 59.139 44.000 27.65 0.00 37.92 2.77
96 97 4.611943 TCTAGATCTGACGCATACAAAGC 58.388 43.478 5.18 0.00 0.00 3.51
97 98 3.251479 AGATCTGACGCATACAAAGCA 57.749 42.857 0.00 0.00 0.00 3.91
98 99 3.599343 AGATCTGACGCATACAAAGCAA 58.401 40.909 0.00 0.00 0.00 3.91
99 100 4.002982 AGATCTGACGCATACAAAGCAAA 58.997 39.130 0.00 0.00 0.00 3.68
100 101 3.536158 TCTGACGCATACAAAGCAAAC 57.464 42.857 0.00 0.00 0.00 2.93
101 102 3.138304 TCTGACGCATACAAAGCAAACT 58.862 40.909 0.00 0.00 0.00 2.66
102 103 3.058983 TCTGACGCATACAAAGCAAACTG 60.059 43.478 0.00 0.00 0.00 3.16
103 104 2.616376 TGACGCATACAAAGCAAACTGT 59.384 40.909 0.00 0.00 0.00 3.55
104 105 3.066064 TGACGCATACAAAGCAAACTGTT 59.934 39.130 0.00 0.00 0.00 3.16
105 106 3.371168 ACGCATACAAAGCAAACTGTTG 58.629 40.909 0.00 0.00 37.83 3.33
127 128 4.191033 CAGTTTTGCAAATAGATGCCCA 57.809 40.909 13.65 0.00 45.83 5.36
128 129 3.928375 CAGTTTTGCAAATAGATGCCCAC 59.072 43.478 13.65 4.74 45.83 4.61
129 130 3.577848 AGTTTTGCAAATAGATGCCCACA 59.422 39.130 13.65 0.00 45.83 4.17
130 131 4.223477 AGTTTTGCAAATAGATGCCCACAT 59.777 37.500 13.65 0.00 45.83 3.21
131 132 4.822685 TTTGCAAATAGATGCCCACATT 57.177 36.364 8.05 0.00 45.83 2.71
132 133 4.822685 TTGCAAATAGATGCCCACATTT 57.177 36.364 0.00 0.00 45.83 2.32
133 134 4.822685 TGCAAATAGATGCCCACATTTT 57.177 36.364 0.00 0.00 45.83 1.82
134 135 5.163281 TGCAAATAGATGCCCACATTTTT 57.837 34.783 0.00 0.00 45.83 1.94
163 164 9.349713 TCTTCATATTTACAAACAACTCCTTGT 57.650 29.630 0.00 0.00 42.81 3.16
164 165 9.612620 CTTCATATTTACAAACAACTCCTTGTC 57.387 33.333 0.00 0.00 39.88 3.18
165 166 8.918202 TCATATTTACAAACAACTCCTTGTCT 57.082 30.769 0.00 0.00 39.88 3.41
166 167 8.999431 TCATATTTACAAACAACTCCTTGTCTC 58.001 33.333 0.00 0.00 39.88 3.36
167 168 9.003658 CATATTTACAAACAACTCCTTGTCTCT 57.996 33.333 0.00 0.00 39.88 3.10
168 169 6.920569 TTTACAAACAACTCCTTGTCTCTC 57.079 37.500 0.00 0.00 39.88 3.20
169 170 3.809905 ACAAACAACTCCTTGTCTCTCC 58.190 45.455 0.00 0.00 39.88 3.71
170 171 3.142174 CAAACAACTCCTTGTCTCTCCC 58.858 50.000 0.00 0.00 39.88 4.30
171 172 2.103153 ACAACTCCTTGTCTCTCCCA 57.897 50.000 0.00 0.00 35.57 4.37
172 173 2.408565 ACAACTCCTTGTCTCTCCCAA 58.591 47.619 0.00 0.00 35.57 4.12
173 174 2.982488 ACAACTCCTTGTCTCTCCCAAT 59.018 45.455 0.00 0.00 35.57 3.16
174 175 3.008485 ACAACTCCTTGTCTCTCCCAATC 59.992 47.826 0.00 0.00 35.57 2.67
175 176 2.907892 ACTCCTTGTCTCTCCCAATCA 58.092 47.619 0.00 0.00 0.00 2.57
176 177 2.836981 ACTCCTTGTCTCTCCCAATCAG 59.163 50.000 0.00 0.00 0.00 2.90
177 178 1.556911 TCCTTGTCTCTCCCAATCAGC 59.443 52.381 0.00 0.00 0.00 4.26
178 179 1.407989 CCTTGTCTCTCCCAATCAGCC 60.408 57.143 0.00 0.00 0.00 4.85
179 180 1.558756 CTTGTCTCTCCCAATCAGCCT 59.441 52.381 0.00 0.00 0.00 4.58
180 181 1.661463 TGTCTCTCCCAATCAGCCTT 58.339 50.000 0.00 0.00 0.00 4.35
181 182 1.280133 TGTCTCTCCCAATCAGCCTTG 59.720 52.381 0.00 0.00 0.00 3.61
182 183 1.280421 GTCTCTCCCAATCAGCCTTGT 59.720 52.381 0.00 0.00 0.00 3.16
183 184 1.556911 TCTCTCCCAATCAGCCTTGTC 59.443 52.381 0.00 0.00 0.00 3.18
184 185 1.558756 CTCTCCCAATCAGCCTTGTCT 59.441 52.381 0.00 0.00 0.00 3.41
185 186 1.556911 TCTCCCAATCAGCCTTGTCTC 59.443 52.381 0.00 0.00 0.00 3.36
186 187 1.558756 CTCCCAATCAGCCTTGTCTCT 59.441 52.381 0.00 0.00 0.00 3.10
187 188 1.280133 TCCCAATCAGCCTTGTCTCTG 59.720 52.381 0.00 0.00 0.00 3.35
188 189 1.093159 CCAATCAGCCTTGTCTCTGC 58.907 55.000 0.00 0.00 0.00 4.26
189 190 1.093159 CAATCAGCCTTGTCTCTGCC 58.907 55.000 0.00 0.00 0.00 4.85
190 191 0.034670 AATCAGCCTTGTCTCTGCCC 60.035 55.000 0.00 0.00 0.00 5.36
191 192 1.919600 ATCAGCCTTGTCTCTGCCCC 61.920 60.000 0.00 0.00 0.00 5.80
192 193 2.530151 AGCCTTGTCTCTGCCCCA 60.530 61.111 0.00 0.00 0.00 4.96
193 194 2.360475 GCCTTGTCTCTGCCCCAC 60.360 66.667 0.00 0.00 0.00 4.61
194 195 2.352805 CCTTGTCTCTGCCCCACC 59.647 66.667 0.00 0.00 0.00 4.61
195 196 2.528818 CCTTGTCTCTGCCCCACCA 61.529 63.158 0.00 0.00 0.00 4.17
196 197 1.302832 CTTGTCTCTGCCCCACCAC 60.303 63.158 0.00 0.00 0.00 4.16
197 198 2.055689 CTTGTCTCTGCCCCACCACA 62.056 60.000 0.00 0.00 0.00 4.17
198 199 1.426251 TTGTCTCTGCCCCACCACAT 61.426 55.000 0.00 0.00 0.00 3.21
199 200 1.078143 GTCTCTGCCCCACCACATC 60.078 63.158 0.00 0.00 0.00 3.06
200 201 2.273449 CTCTGCCCCACCACATCC 59.727 66.667 0.00 0.00 0.00 3.51
201 202 2.531428 TCTGCCCCACCACATCCA 60.531 61.111 0.00 0.00 0.00 3.41
202 203 2.044650 CTGCCCCACCACATCCAG 60.045 66.667 0.00 0.00 0.00 3.86
203 204 2.531428 TGCCCCACCACATCCAGA 60.531 61.111 0.00 0.00 0.00 3.86
204 205 2.141011 CTGCCCCACCACATCCAGAA 62.141 60.000 0.00 0.00 0.00 3.02
205 206 1.379044 GCCCCACCACATCCAGAAG 60.379 63.158 0.00 0.00 0.00 2.85
206 207 1.304282 CCCCACCACATCCAGAAGG 59.696 63.158 0.00 0.00 0.00 3.46
207 208 1.379044 CCCACCACATCCAGAAGGC 60.379 63.158 0.00 0.00 33.74 4.35
208 209 1.379044 CCACCACATCCAGAAGGCC 60.379 63.158 0.00 0.00 33.74 5.19
209 210 1.379916 CACCACATCCAGAAGGCCA 59.620 57.895 5.01 0.00 33.74 5.36
210 211 0.033796 CACCACATCCAGAAGGCCAT 60.034 55.000 5.01 0.00 33.74 4.40
211 212 0.033796 ACCACATCCAGAAGGCCATG 60.034 55.000 5.01 0.30 33.74 3.66
212 213 0.754217 CCACATCCAGAAGGCCATGG 60.754 60.000 7.63 7.63 37.97 3.66
216 217 2.473768 TCCAGAAGGCCATGGAACA 58.526 52.632 18.40 0.57 42.61 3.18
217 218 0.776810 TCCAGAAGGCCATGGAACAA 59.223 50.000 18.40 0.25 42.61 2.83
218 219 1.358787 TCCAGAAGGCCATGGAACAAT 59.641 47.619 18.40 0.20 42.61 2.71
219 220 2.621407 TCCAGAAGGCCATGGAACAATC 60.621 50.000 18.40 9.84 42.61 2.67
220 221 4.915515 TCCAGAAGGCCATGGAACAATCT 61.916 47.826 18.40 11.87 42.61 2.40
221 222 5.619870 TCCAGAAGGCCATGGAACAATCTA 61.620 45.833 18.40 0.00 42.61 1.98
222 223 7.054868 TCCAGAAGGCCATGGAACAATCTAA 62.055 44.000 18.40 4.84 42.61 2.10
223 224 8.291984 TCCAGAAGGCCATGGAACAATCTAAT 62.292 42.308 18.40 0.00 42.61 1.73
235 236 5.643379 AACAATCTAATGTTCCGTGCAAT 57.357 34.783 0.00 0.00 39.23 3.56
236 237 4.985413 ACAATCTAATGTTCCGTGCAATG 58.015 39.130 0.00 0.00 0.00 2.82
237 238 3.698029 ATCTAATGTTCCGTGCAATGC 57.302 42.857 0.00 0.00 0.00 3.56
238 239 2.431454 TCTAATGTTCCGTGCAATGCA 58.569 42.857 2.72 2.72 35.60 3.96
258 259 4.437239 GCACATGCATCTTACTAGTCAGT 58.563 43.478 0.00 0.00 41.59 3.41
259 260 5.592054 GCACATGCATCTTACTAGTCAGTA 58.408 41.667 0.00 0.00 41.59 2.74
260 261 5.460419 GCACATGCATCTTACTAGTCAGTAC 59.540 44.000 0.00 0.00 37.73 2.73
261 262 6.564328 CACATGCATCTTACTAGTCAGTACA 58.436 40.000 0.00 0.00 36.98 2.90
262 263 7.035612 CACATGCATCTTACTAGTCAGTACAA 58.964 38.462 0.00 0.00 36.98 2.41
263 264 7.545615 CACATGCATCTTACTAGTCAGTACAAA 59.454 37.037 0.00 0.00 36.98 2.83
264 265 7.761704 ACATGCATCTTACTAGTCAGTACAAAG 59.238 37.037 0.00 0.00 36.98 2.77
265 266 7.462571 TGCATCTTACTAGTCAGTACAAAGA 57.537 36.000 0.00 1.15 36.98 2.52
266 267 7.539436 TGCATCTTACTAGTCAGTACAAAGAG 58.461 38.462 0.00 0.00 36.98 2.85
267 268 7.393515 TGCATCTTACTAGTCAGTACAAAGAGA 59.606 37.037 0.00 0.00 36.98 3.10
268 269 8.244802 GCATCTTACTAGTCAGTACAAAGAGAA 58.755 37.037 0.00 0.00 36.98 2.87
272 273 9.413048 CTTACTAGTCAGTACAAAGAGAAAAGG 57.587 37.037 0.00 0.00 36.98 3.11
273 274 6.760291 ACTAGTCAGTACAAAGAGAAAAGGG 58.240 40.000 0.00 0.00 31.45 3.95
274 275 4.390264 AGTCAGTACAAAGAGAAAAGGGC 58.610 43.478 0.00 0.00 0.00 5.19
275 276 3.186613 GTCAGTACAAAGAGAAAAGGGCG 59.813 47.826 0.00 0.00 0.00 6.13
276 277 2.484264 CAGTACAAAGAGAAAAGGGCGG 59.516 50.000 0.00 0.00 0.00 6.13
277 278 2.370849 AGTACAAAGAGAAAAGGGCGGA 59.629 45.455 0.00 0.00 0.00 5.54
278 279 2.358322 ACAAAGAGAAAAGGGCGGAA 57.642 45.000 0.00 0.00 0.00 4.30
279 280 2.230660 ACAAAGAGAAAAGGGCGGAAG 58.769 47.619 0.00 0.00 0.00 3.46
280 281 1.541588 CAAAGAGAAAAGGGCGGAAGG 59.458 52.381 0.00 0.00 0.00 3.46
281 282 1.064825 AAGAGAAAAGGGCGGAAGGA 58.935 50.000 0.00 0.00 0.00 3.36
282 283 1.064825 AGAGAAAAGGGCGGAAGGAA 58.935 50.000 0.00 0.00 0.00 3.36
283 284 1.423921 AGAGAAAAGGGCGGAAGGAAA 59.576 47.619 0.00 0.00 0.00 3.13
284 285 2.158519 AGAGAAAAGGGCGGAAGGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
285 286 1.961394 AGAAAAGGGCGGAAGGAAAAC 59.039 47.619 0.00 0.00 0.00 2.43
286 287 1.684450 GAAAAGGGCGGAAGGAAAACA 59.316 47.619 0.00 0.00 0.00 2.83
287 288 1.783071 AAAGGGCGGAAGGAAAACAA 58.217 45.000 0.00 0.00 0.00 2.83
288 289 1.037493 AAGGGCGGAAGGAAAACAAC 58.963 50.000 0.00 0.00 0.00 3.32
289 290 1.170290 AGGGCGGAAGGAAAACAACG 61.170 55.000 0.00 0.00 0.00 4.10
290 291 1.449726 GGGCGGAAGGAAAACAACGT 61.450 55.000 0.00 0.00 0.00 3.99
291 292 0.382873 GGCGGAAGGAAAACAACGTT 59.617 50.000 0.00 0.00 0.00 3.99
292 293 1.603326 GGCGGAAGGAAAACAACGTTA 59.397 47.619 0.00 0.00 0.00 3.18
293 294 2.602933 GGCGGAAGGAAAACAACGTTAC 60.603 50.000 0.00 0.00 0.00 2.50
294 295 2.288729 GCGGAAGGAAAACAACGTTACT 59.711 45.455 0.00 0.00 0.00 2.24
295 296 3.242837 GCGGAAGGAAAACAACGTTACTT 60.243 43.478 0.00 0.00 0.00 2.24
296 297 4.731483 GCGGAAGGAAAACAACGTTACTTT 60.731 41.667 0.00 3.30 0.00 2.66
297 298 5.334319 CGGAAGGAAAACAACGTTACTTTT 58.666 37.500 13.12 13.12 0.00 2.27
298 299 5.801444 CGGAAGGAAAACAACGTTACTTTTT 59.199 36.000 14.01 13.01 0.00 1.94
299 300 6.021232 CGGAAGGAAAACAACGTTACTTTTTC 60.021 38.462 22.03 22.03 37.27 2.29
300 301 7.031372 GGAAGGAAAACAACGTTACTTTTTCT 58.969 34.615 25.54 20.55 37.84 2.52
301 302 7.543172 GGAAGGAAAACAACGTTACTTTTTCTT 59.457 33.333 24.09 24.09 36.04 2.52
302 303 9.558648 GAAGGAAAACAACGTTACTTTTTCTTA 57.441 29.630 23.98 0.00 34.30 2.10
303 304 9.563898 AAGGAAAACAACGTTACTTTTTCTTAG 57.436 29.630 23.28 4.38 37.84 2.18
304 305 8.186163 AGGAAAACAACGTTACTTTTTCTTAGG 58.814 33.333 25.54 6.81 37.84 2.69
305 306 7.433131 GGAAAACAACGTTACTTTTTCTTAGGG 59.567 37.037 25.54 6.47 37.84 3.53
391 394 5.775195 AGTAAAGAGGGGGTTGAATTGAAAG 59.225 40.000 0.00 0.00 0.00 2.62
397 400 3.895041 GGGGGTTGAATTGAAAGAAGTGA 59.105 43.478 0.00 0.00 0.00 3.41
419 422 3.146104 ACTGCCACTTATCTTGCAAGT 57.854 42.857 25.19 15.13 36.68 3.16
949 1021 2.695147 GGCGAAAGGGGATTGATTGATT 59.305 45.455 0.00 0.00 0.00 2.57
950 1022 3.491447 GGCGAAAGGGGATTGATTGATTG 60.491 47.826 0.00 0.00 0.00 2.67
951 1023 3.381272 GCGAAAGGGGATTGATTGATTGA 59.619 43.478 0.00 0.00 0.00 2.57
952 1024 4.038402 GCGAAAGGGGATTGATTGATTGAT 59.962 41.667 0.00 0.00 0.00 2.57
1347 1419 0.324738 TCTCCGACTCCCTCAAGCAT 60.325 55.000 0.00 0.00 0.00 3.79
1350 1422 1.227089 CGACTCCCTCAAGCATCCG 60.227 63.158 0.00 0.00 0.00 4.18
1371 1443 2.124942 GAGAAGGAGGCCAAGCGG 60.125 66.667 5.01 0.00 0.00 5.52
1644 1716 4.824166 CGCTACGTCGTGTCCCCG 62.824 72.222 8.47 0.00 0.00 5.73
1785 1857 3.382546 GCATCTATGGCAAGTTCATGGTT 59.617 43.478 0.00 0.00 0.00 3.67
2083 2155 1.066787 GTCTCCTCAAGTACTGGCCAC 60.067 57.143 0.00 0.00 0.00 5.01
2187 2259 0.038709 GCATGGTGCCGCTGTTTAAA 60.039 50.000 0.00 0.00 37.42 1.52
2280 2352 8.737168 TGTATCTGCTTGCTGTTATATTTCTT 57.263 30.769 0.00 0.00 0.00 2.52
2281 2353 8.830580 TGTATCTGCTTGCTGTTATATTTCTTC 58.169 33.333 0.00 0.00 0.00 2.87
2282 2354 6.349973 TCTGCTTGCTGTTATATTTCTTCG 57.650 37.500 0.00 0.00 0.00 3.79
2410 2482 1.478510 CACTCAGTGTAGGTGCTAGGG 59.521 57.143 0.00 0.00 0.00 3.53
2431 2504 5.105269 AGGGAAAAACCGTTATTTTGTGTGT 60.105 36.000 0.00 0.00 40.11 3.72
2464 2537 9.817365 CATCTGTCTGTTTGTGAAATAAACTAG 57.183 33.333 0.00 0.00 46.48 2.57
2572 2647 4.098807 AGGAAAAGCCGTTATTTTGTGTGT 59.901 37.500 0.00 0.00 43.43 3.72
2739 2814 3.029074 CAAACAAGTTCTTTCGTCAGCG 58.971 45.455 0.00 0.00 39.92 5.18
2771 2846 6.757897 TCTTGGCCTGTTTTGTATAAGATG 57.242 37.500 3.32 0.00 0.00 2.90
2781 2857 9.630098 CTGTTTTGTATAAGATGAACAAGCAAT 57.370 29.630 0.00 0.00 34.80 3.56
2855 2932 9.546428 AATTAGCATTTGTATGATTAAAAGGCC 57.454 29.630 0.00 0.00 40.44 5.19
2906 2983 9.632807 TTAAAATGTGAATAACAACCTACATGC 57.367 29.630 0.00 0.00 43.61 4.06
2956 3033 5.549742 TTGTTCCTGATTTGCCTTTGATT 57.450 34.783 0.00 0.00 0.00 2.57
2962 3039 5.047802 TCCTGATTTGCCTTTGATTGTCTTC 60.048 40.000 0.00 0.00 0.00 2.87
2964 3041 4.021192 TGATTTGCCTTTGATTGTCTTCCC 60.021 41.667 0.00 0.00 0.00 3.97
2973 3050 4.301072 TGATTGTCTTCCCTACCTTTGG 57.699 45.455 0.00 0.00 0.00 3.28
3041 3118 5.435686 TGCCTATATCACAAGTGGAAGTT 57.564 39.130 0.00 0.00 0.00 2.66
3102 3179 2.762535 TAAGTGTGTGGAAGCTAGCC 57.237 50.000 12.13 0.00 0.00 3.93
3190 3267 4.714802 ACTTGTTTGGGACTAAAGGCTTTT 59.285 37.500 18.93 0.00 0.00 2.27
3191 3268 5.894964 ACTTGTTTGGGACTAAAGGCTTTTA 59.105 36.000 18.93 0.70 0.00 1.52
3320 3425 6.371809 TTGTGTTACTGTGTGAAAGAATCC 57.628 37.500 0.00 0.00 0.00 3.01
3324 3429 7.936847 TGTGTTACTGTGTGAAAGAATCCTATT 59.063 33.333 0.00 0.00 0.00 1.73
3329 3434 5.559770 TGTGTGAAAGAATCCTATTCTGCA 58.440 37.500 3.04 2.98 0.00 4.41
3330 3435 6.003326 TGTGTGAAAGAATCCTATTCTGCAA 58.997 36.000 3.04 0.00 0.00 4.08
3406 3511 2.416701 CCACACGTTTCAACAGCCTTTT 60.417 45.455 0.00 0.00 0.00 2.27
3465 3570 5.009631 TGTCTGTATATTTTGGCACTTGCT 58.990 37.500 0.38 0.00 41.70 3.91
3546 3655 1.089920 GACTGTGGGCTGTTAGCATG 58.910 55.000 2.99 0.00 44.75 4.06
3548 3657 1.339438 ACTGTGGGCTGTTAGCATGAG 60.339 52.381 0.00 0.00 44.75 2.90
3566 3675 4.632327 TGAGGTTGTGTATGGATTGACA 57.368 40.909 0.00 0.00 0.00 3.58
3658 3767 3.370672 CAGATGTGCACAGTATTGCGTTA 59.629 43.478 25.84 0.00 46.20 3.18
3720 3829 5.222631 CCTAGTTTCATTGTTTGTCTTGGC 58.777 41.667 0.00 0.00 0.00 4.52
3924 4033 2.639065 GGTTAATTGGATCTGTGCCGA 58.361 47.619 0.00 0.00 0.00 5.54
3946 4055 2.620251 TTATGGATGAGCGGGAAGTG 57.380 50.000 0.00 0.00 0.00 3.16
3965 4074 4.096681 AGTGTGGATGTGGATAGAGAACA 58.903 43.478 0.00 0.00 0.00 3.18
3967 4076 5.190528 AGTGTGGATGTGGATAGAGAACAAT 59.809 40.000 0.00 0.00 0.00 2.71
4074 4183 0.601046 CAAGTTGACCTGCTCTGCGA 60.601 55.000 0.00 0.00 0.00 5.10
4080 4191 0.811915 GACCTGCTCTGCGAGACTTA 59.188 55.000 9.32 0.00 0.00 2.24
4084 4195 2.353208 CCTGCTCTGCGAGACTTAACTT 60.353 50.000 9.32 0.00 0.00 2.66
4101 4212 7.381323 ACTTAACTTGTACGCACCTATAAACT 58.619 34.615 0.00 0.00 0.00 2.66
4226 4337 1.030457 ATTGCTAGGCATCTGCTTGC 58.970 50.000 1.70 5.15 38.76 4.01
4707 4818 9.244799 CAGTTTTACCATCTTTTAACAAGAACC 57.755 33.333 4.82 0.00 0.00 3.62
4708 4819 8.973182 AGTTTTACCATCTTTTAACAAGAACCA 58.027 29.630 4.82 0.00 0.00 3.67
4709 4820 9.758651 GTTTTACCATCTTTTAACAAGAACCAT 57.241 29.630 4.82 0.00 0.00 3.55
4710 4821 9.974980 TTTTACCATCTTTTAACAAGAACCATC 57.025 29.630 4.82 0.00 0.00 3.51
4711 4822 6.590234 ACCATCTTTTAACAAGAACCATCC 57.410 37.500 4.82 0.00 0.00 3.51
4712 4823 6.074648 ACCATCTTTTAACAAGAACCATCCA 58.925 36.000 4.82 0.00 0.00 3.41
4713 4824 6.015434 ACCATCTTTTAACAAGAACCATCCAC 60.015 38.462 4.82 0.00 0.00 4.02
4714 4825 6.015519 CCATCTTTTAACAAGAACCATCCACA 60.016 38.462 4.82 0.00 0.00 4.17
4716 4827 7.411486 TCTTTTAACAAGAACCATCCACAAA 57.589 32.000 0.00 0.00 0.00 2.83
4717 4828 7.262048 TCTTTTAACAAGAACCATCCACAAAC 58.738 34.615 0.00 0.00 0.00 2.93
4718 4829 6.531503 TTTAACAAGAACCATCCACAAACA 57.468 33.333 0.00 0.00 0.00 2.83
4719 4830 6.531503 TTAACAAGAACCATCCACAAACAA 57.468 33.333 0.00 0.00 0.00 2.83
4720 4831 5.612725 AACAAGAACCATCCACAAACAAT 57.387 34.783 0.00 0.00 0.00 2.71
4721 4832 5.612725 ACAAGAACCATCCACAAACAATT 57.387 34.783 0.00 0.00 0.00 2.32
4722 4833 5.988287 ACAAGAACCATCCACAAACAATTT 58.012 33.333 0.00 0.00 0.00 1.82
4723 4834 7.118496 ACAAGAACCATCCACAAACAATTTA 57.882 32.000 0.00 0.00 0.00 1.40
4724 4835 7.560368 ACAAGAACCATCCACAAACAATTTAA 58.440 30.769 0.00 0.00 0.00 1.52
4725 4836 7.494298 ACAAGAACCATCCACAAACAATTTAAC 59.506 33.333 0.00 0.00 0.00 2.01
4726 4837 7.360113 AGAACCATCCACAAACAATTTAACT 57.640 32.000 0.00 0.00 0.00 2.24
4727 4838 7.791029 AGAACCATCCACAAACAATTTAACTT 58.209 30.769 0.00 0.00 0.00 2.66
4728 4839 7.926018 AGAACCATCCACAAACAATTTAACTTC 59.074 33.333 0.00 0.00 0.00 3.01
4729 4840 6.521162 ACCATCCACAAACAATTTAACTTCC 58.479 36.000 0.00 0.00 0.00 3.46
4730 4841 5.931724 CCATCCACAAACAATTTAACTTCCC 59.068 40.000 0.00 0.00 0.00 3.97
4731 4842 6.239572 CCATCCACAAACAATTTAACTTCCCT 60.240 38.462 0.00 0.00 0.00 4.20
4732 4843 7.039363 CCATCCACAAACAATTTAACTTCCCTA 60.039 37.037 0.00 0.00 0.00 3.53
4733 4844 8.531146 CATCCACAAACAATTTAACTTCCCTAT 58.469 33.333 0.00 0.00 0.00 2.57
4734 4845 8.117813 TCCACAAACAATTTAACTTCCCTATC 57.882 34.615 0.00 0.00 0.00 2.08
4735 4846 7.726291 TCCACAAACAATTTAACTTCCCTATCA 59.274 33.333 0.00 0.00 0.00 2.15
4736 4847 8.028938 CCACAAACAATTTAACTTCCCTATCAG 58.971 37.037 0.00 0.00 0.00 2.90
4737 4848 8.576442 CACAAACAATTTAACTTCCCTATCAGT 58.424 33.333 0.00 0.00 0.00 3.41
4738 4849 8.793592 ACAAACAATTTAACTTCCCTATCAGTC 58.206 33.333 0.00 0.00 0.00 3.51
4791 4902 2.097629 CCAAACTGAGCTCTGCATCATG 59.902 50.000 19.49 11.23 0.00 3.07
5005 5127 9.202273 GTAATTTTCACCAGAATGCAATGTTAA 57.798 29.630 0.00 0.00 32.89 2.01
5007 5129 7.655236 TTTTCACCAGAATGCAATGTTAATG 57.345 32.000 0.00 0.00 32.89 1.90
5026 5148 2.048601 TGGGGTTTTGACGGAGACTTA 58.951 47.619 0.00 0.00 0.00 2.24
5098 5220 3.662759 TGAACCCAAACACTTTCCTCT 57.337 42.857 0.00 0.00 0.00 3.69
5287 5423 3.350163 CCCATTGCCAGGACCCCT 61.350 66.667 0.00 0.00 0.00 4.79
5412 5549 5.221966 ACCCTTGTTTGGCACTACTTATGTA 60.222 40.000 0.00 0.00 0.00 2.29
5419 5556 6.671614 TTGGCACTACTTATGTATTTTCGG 57.328 37.500 0.00 0.00 0.00 4.30
5532 5669 7.236847 TGGAGTTCTTTTAATTGGAGGAGAGTA 59.763 37.037 0.00 0.00 0.00 2.59
5558 5695 4.996788 AGCCCATCAAGAAGCTTTATTG 57.003 40.909 15.60 15.60 29.27 1.90
5563 5700 7.124750 AGCCCATCAAGAAGCTTTATTGTTAAT 59.875 33.333 19.11 8.05 29.27 1.40
5646 5783 3.457234 CGCTTCCTGATAACTGCACATA 58.543 45.455 0.00 0.00 0.00 2.29
5713 5850 9.109393 GCTTTGACCTATTTGATGATACAGTTA 57.891 33.333 0.00 0.00 0.00 2.24
5758 5895 2.939103 CGATTGCCCTTTCTCCTGTAAG 59.061 50.000 0.00 0.00 0.00 2.34
6011 6149 3.664107 AGCAAGCTATTTGTTCTGTCGA 58.336 40.909 0.00 0.00 39.08 4.20
6038 6181 2.093075 CAGTTGTGCTCATCAGATCCCT 60.093 50.000 0.00 0.00 0.00 4.20
6085 6228 2.816411 TGTCAAATACTCCCTCCGTCT 58.184 47.619 0.00 0.00 0.00 4.18
6141 6284 2.038033 CCGTTTTTCTCCCCACTAGACA 59.962 50.000 0.00 0.00 0.00 3.41
6147 6290 0.904649 CTCCCCACTAGACATGTGCA 59.095 55.000 1.15 0.00 34.38 4.57
6224 6382 2.577059 GCAACCAGCTGCATGCAT 59.423 55.556 27.27 3.95 45.94 3.96
6225 6383 1.811195 GCAACCAGCTGCATGCATA 59.189 52.632 27.27 0.00 45.94 3.14
6227 6385 1.202486 GCAACCAGCTGCATGCATAAT 60.202 47.619 27.27 7.26 45.94 1.28
6228 6386 2.739292 CAACCAGCTGCATGCATAATC 58.261 47.619 22.97 10.78 45.94 1.75
6229 6387 2.061509 ACCAGCTGCATGCATAATCA 57.938 45.000 22.97 0.00 45.94 2.57
6230 6388 1.679680 ACCAGCTGCATGCATAATCAC 59.320 47.619 22.97 6.84 45.94 3.06
6233 6392 0.662374 GCTGCATGCATAATCACGGC 60.662 55.000 22.97 14.64 42.31 5.68
6259 6418 1.828660 GGCTAGCGCTGGAGGAGTA 60.829 63.158 26.32 0.00 36.09 2.59
6324 6483 4.139786 CTGGCATGCTCCATAATAACTGT 58.860 43.478 18.92 0.00 35.22 3.55
6367 6528 0.953471 TGCTCGGAAATCACGGGTTG 60.953 55.000 0.00 0.00 33.53 3.77
6431 6592 1.064537 GGCCCAATAAACCCGGACTTA 60.065 52.381 0.73 0.00 0.00 2.24
6460 6621 7.352738 AGTAGTTAGTGCTAGTGGTATTACCT 58.647 38.462 13.90 0.00 39.58 3.08
6461 6622 6.466885 AGTTAGTGCTAGTGGTATTACCTG 57.533 41.667 13.90 3.57 39.58 4.00
6499 6660 3.648683 ATGGTATAGCTACCCCTTCCA 57.351 47.619 10.90 3.12 46.01 3.53
6512 6673 5.959583 ACCCCTTCCAAATAGAGAACTAG 57.040 43.478 0.00 0.00 31.78 2.57
6535 6696 3.035363 TGCTCCCTACCGTTTCATCATA 58.965 45.455 0.00 0.00 0.00 2.15
6537 6698 3.069729 GCTCCCTACCGTTTCATCATACT 59.930 47.826 0.00 0.00 0.00 2.12
6611 6772 1.594397 GCAGTTTCTTGCTGGTTTTGC 59.406 47.619 0.00 0.00 40.89 3.68
6637 6798 5.164606 AGAACCACGTTTGATTACACAAC 57.835 39.130 0.00 0.00 0.00 3.32
6639 6800 3.547746 ACCACGTTTGATTACACAACCT 58.452 40.909 0.00 0.00 0.00 3.50
6645 6806 6.412653 CACGTTTGATTACACAACCTTTGTAC 59.587 38.462 0.00 0.00 43.23 2.90
6646 6807 6.316890 ACGTTTGATTACACAACCTTTGTACT 59.683 34.615 0.00 0.00 43.23 2.73
6647 6808 6.849305 CGTTTGATTACACAACCTTTGTACTC 59.151 38.462 0.00 0.00 43.23 2.59
6648 6809 6.870971 TTGATTACACAACCTTTGTACTCC 57.129 37.500 0.00 0.00 43.23 3.85
6649 6810 5.310451 TGATTACACAACCTTTGTACTCCC 58.690 41.667 0.00 0.00 43.23 4.30
6650 6811 5.072600 TGATTACACAACCTTTGTACTCCCT 59.927 40.000 0.00 0.00 43.23 4.20
6651 6812 3.487120 ACACAACCTTTGTACTCCCTC 57.513 47.619 0.00 0.00 43.23 4.30
6652 6813 2.105993 ACACAACCTTTGTACTCCCTCC 59.894 50.000 0.00 0.00 43.23 4.30
6653 6814 1.346722 ACAACCTTTGTACTCCCTCCG 59.653 52.381 0.00 0.00 43.27 4.63
6654 6815 1.346722 CAACCTTTGTACTCCCTCCGT 59.653 52.381 0.00 0.00 0.00 4.69
6655 6816 1.725803 ACCTTTGTACTCCCTCCGTT 58.274 50.000 0.00 0.00 0.00 4.44
6656 6817 1.622312 ACCTTTGTACTCCCTCCGTTC 59.378 52.381 0.00 0.00 0.00 3.95
6657 6818 1.066358 CCTTTGTACTCCCTCCGTTCC 60.066 57.143 0.00 0.00 0.00 3.62
6658 6819 1.900486 CTTTGTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
6659 6820 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
6660 6821 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
6661 6822 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
6662 6823 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
6663 6824 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
6664 6825 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
6665 6826 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
6666 6827 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
6667 6828 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
6668 6829 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
6669 6830 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
6670 6831 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
6671 6832 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
6672 6833 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
6673 6834 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
6674 6835 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
6675 6836 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
6676 6837 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
6677 6838 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
6690 6851 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
6691 6852 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
6692 6853 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
6693 6854 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
6694 6855 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
6695 6856 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
6696 6857 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
6697 6858 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
6698 6859 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
6700 6861 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
6701 6862 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
6702 6863 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
6703 6864 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
6704 6865 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
6705 6866 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
6706 6867 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
6707 6868 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
6708 6869 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
6709 6870 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
6710 6871 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
6711 6872 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
6712 6873 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
6713 6874 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
6714 6875 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
6715 6876 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
6716 6877 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
6717 6878 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
6718 6879 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
6719 6880 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
6720 6881 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
6721 6882 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
6722 6883 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
6723 6884 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
6724 6885 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
6756 6917 9.476928 AATATGTCTATATACAGGTGGTAGTCC 57.523 37.037 0.00 0.00 34.92 3.85
6757 6918 6.270219 TGTCTATATACAGGTGGTAGTCCA 57.730 41.667 0.00 0.00 42.05 4.02
6758 6919 6.860034 TGTCTATATACAGGTGGTAGTCCAT 58.140 40.000 0.00 0.00 46.20 3.41
6759 6920 7.302948 TGTCTATATACAGGTGGTAGTCCATT 58.697 38.462 0.00 0.00 46.20 3.16
6760 6921 7.787904 TGTCTATATACAGGTGGTAGTCCATTT 59.212 37.037 0.00 0.00 46.20 2.32
6761 6922 8.088981 GTCTATATACAGGTGGTAGTCCATTTG 58.911 40.741 0.00 0.00 46.20 2.32
6762 6923 8.008332 TCTATATACAGGTGGTAGTCCATTTGA 58.992 37.037 7.55 0.00 46.20 2.69
6763 6924 5.772393 ATACAGGTGGTAGTCCATTTGAA 57.228 39.130 7.55 0.00 46.20 2.69
6764 6925 4.447138 ACAGGTGGTAGTCCATTTGAAA 57.553 40.909 7.55 0.00 46.20 2.69
6765 6926 4.998051 ACAGGTGGTAGTCCATTTGAAAT 58.002 39.130 7.55 0.00 46.20 2.17
6766 6927 5.010282 ACAGGTGGTAGTCCATTTGAAATC 58.990 41.667 0.00 0.00 46.20 2.17
6767 6928 5.222130 ACAGGTGGTAGTCCATTTGAAATCT 60.222 40.000 0.00 0.00 46.20 2.40
6768 6929 5.355350 CAGGTGGTAGTCCATTTGAAATCTC 59.645 44.000 0.00 0.00 46.20 2.75
6769 6930 5.251700 AGGTGGTAGTCCATTTGAAATCTCT 59.748 40.000 0.00 0.00 46.20 3.10
6770 6931 6.443849 AGGTGGTAGTCCATTTGAAATCTCTA 59.556 38.462 0.00 0.00 46.20 2.43
6771 6932 7.037586 AGGTGGTAGTCCATTTGAAATCTCTAA 60.038 37.037 0.00 0.00 46.20 2.10
6772 6933 7.610305 GGTGGTAGTCCATTTGAAATCTCTAAA 59.390 37.037 0.00 0.00 46.20 1.85
6773 6934 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
6774 6935 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
6778 6939 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
6779 6940 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
6797 6958 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
6798 6959 7.510675 AGACAAATATTTAGGAACAGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
6799 6960 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
6800 6961 7.182930 AGACAAATATTTAGGAACAGAGGGAGT 59.817 37.037 0.00 0.00 0.00 3.85
6801 6962 8.388656 ACAAATATTTAGGAACAGAGGGAGTA 57.611 34.615 0.00 0.00 0.00 2.59
7172 7333 2.649034 CTGTTGCTGCCAAGGCTG 59.351 61.111 12.96 12.97 42.51 4.85
7250 7411 1.608109 TCGTTAGTGGTTGCGTCACTA 59.392 47.619 8.81 8.81 42.91 2.74
7253 7414 2.074547 TAGTGGTTGCGTCACTAAGC 57.925 50.000 10.02 0.00 42.59 3.09
7254 7415 0.393077 AGTGGTTGCGTCACTAAGCT 59.607 50.000 4.87 0.00 42.91 3.74
7255 7416 1.616865 AGTGGTTGCGTCACTAAGCTA 59.383 47.619 4.87 0.00 42.91 3.32
7370 7531 5.858381 TCTATGAGATGCATTACCACCTTC 58.142 41.667 0.00 0.00 38.44 3.46
7442 7603 7.496529 AAGATGGAATATGTTTGTGTATCGG 57.503 36.000 0.00 0.00 0.00 4.18
7447 7608 6.537301 TGGAATATGTTTGTGTATCGGACTTC 59.463 38.462 0.00 0.00 0.00 3.01
7464 7625 5.619086 CGGACTTCCAATTGTTTATGGACAC 60.619 44.000 4.43 0.00 45.14 3.67
7501 7662 6.973229 AATTTCAAGCAAACCTTATGATGC 57.027 33.333 0.00 0.00 39.06 3.91
7653 7814 4.962836 GGTGCTGGTGCTGGTGCT 62.963 66.667 0.00 0.00 40.48 4.40
7654 7815 3.667282 GTGCTGGTGCTGGTGCTG 61.667 66.667 0.00 0.00 40.48 4.41
7655 7816 4.960866 TGCTGGTGCTGGTGCTGG 62.961 66.667 0.00 0.00 40.48 4.85
7656 7817 4.962836 GCTGGTGCTGGTGCTGGT 62.963 66.667 0.00 0.00 40.48 4.00
7657 7818 2.981909 CTGGTGCTGGTGCTGGTG 60.982 66.667 0.00 0.00 40.48 4.17
7761 7925 3.347216 GAAACATGATGGTGGTAGCAGT 58.653 45.455 0.00 0.00 0.00 4.40
7804 7971 3.665675 AACGAGGTCCTGCGATGGC 62.666 63.158 15.00 0.00 40.52 4.40
7806 7973 2.512515 GAGGTCCTGCGATGGCAC 60.513 66.667 0.00 0.00 46.21 5.01
7843 8010 3.632145 TGCTTTGTTCAACTCCTTTCTCC 59.368 43.478 0.00 0.00 0.00 3.71
7878 8045 9.745018 ATGATTATGAATGAATAATCGGACCTT 57.255 29.630 12.55 0.00 46.08 3.50
8084 8276 4.164030 TGTGGTTGATGCTGATACCATAGT 59.836 41.667 0.00 0.00 42.21 2.12
8100 8292 9.726438 GATACCATAGTAATAAAATGGCTCACT 57.274 33.333 0.54 0.00 43.33 3.41
8143 8336 3.561143 TGCAGATGTTGTAGGTTTTGGT 58.439 40.909 0.00 0.00 0.00 3.67
8158 8351 2.149383 TGGTGGAAGCAGTGCCTCT 61.149 57.895 12.58 0.00 40.88 3.69
8159 8352 1.376553 GGTGGAAGCAGTGCCTCTC 60.377 63.158 12.58 6.20 0.00 3.20
8173 8366 3.984186 CTCTCCCTCCCCCTCGCAA 62.984 68.421 0.00 0.00 0.00 4.85
8182 8375 2.586245 CCCTCGCAAGCTGGATCA 59.414 61.111 0.00 0.00 33.51 2.92
8186 8379 1.065102 CCTCGCAAGCTGGATCAAATG 59.935 52.381 0.00 0.00 33.51 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.618890 CAATTCAGATTTTTATAGGAGTGGAGA 57.381 33.333 0.00 0.00 0.00 3.71
5 6 8.844244 CCAATTCAGATTTTTATAGGAGTGGAG 58.156 37.037 0.00 0.00 0.00 3.86
6 7 8.336235 ACCAATTCAGATTTTTATAGGAGTGGA 58.664 33.333 0.00 0.00 0.00 4.02
7 8 8.408601 CACCAATTCAGATTTTTATAGGAGTGG 58.591 37.037 0.00 0.00 0.00 4.00
8 9 9.177608 TCACCAATTCAGATTTTTATAGGAGTG 57.822 33.333 0.00 0.00 0.00 3.51
9 10 9.927081 ATCACCAATTCAGATTTTTATAGGAGT 57.073 29.630 0.00 0.00 0.00 3.85
17 18 8.596293 ACACCATTATCACCAATTCAGATTTTT 58.404 29.630 0.00 0.00 0.00 1.94
18 19 8.036575 CACACCATTATCACCAATTCAGATTTT 58.963 33.333 0.00 0.00 0.00 1.82
19 20 7.549839 CACACCATTATCACCAATTCAGATTT 58.450 34.615 0.00 0.00 0.00 2.17
20 21 6.406177 GCACACCATTATCACCAATTCAGATT 60.406 38.462 0.00 0.00 0.00 2.40
21 22 5.068198 GCACACCATTATCACCAATTCAGAT 59.932 40.000 0.00 0.00 0.00 2.90
22 23 4.398988 GCACACCATTATCACCAATTCAGA 59.601 41.667 0.00 0.00 0.00 3.27
23 24 4.440525 GGCACACCATTATCACCAATTCAG 60.441 45.833 0.00 0.00 35.26 3.02
24 25 3.446873 GGCACACCATTATCACCAATTCA 59.553 43.478 0.00 0.00 35.26 2.57
25 26 3.701040 AGGCACACCATTATCACCAATTC 59.299 43.478 0.00 0.00 39.06 2.17
26 27 3.711863 AGGCACACCATTATCACCAATT 58.288 40.909 0.00 0.00 39.06 2.32
27 28 3.386932 AGGCACACCATTATCACCAAT 57.613 42.857 0.00 0.00 39.06 3.16
28 29 2.897271 AGGCACACCATTATCACCAA 57.103 45.000 0.00 0.00 39.06 3.67
29 30 2.620367 GGAAGGCACACCATTATCACCA 60.620 50.000 0.00 0.00 39.06 4.17
30 31 2.024414 GGAAGGCACACCATTATCACC 58.976 52.381 0.00 0.00 39.06 4.02
31 32 2.722094 TGGAAGGCACACCATTATCAC 58.278 47.619 0.00 0.00 39.06 3.06
32 33 3.202818 AGATGGAAGGCACACCATTATCA 59.797 43.478 10.44 0.00 44.62 2.15
33 34 3.825328 AGATGGAAGGCACACCATTATC 58.175 45.455 10.44 1.66 44.62 1.75
34 35 3.959495 AGATGGAAGGCACACCATTAT 57.041 42.857 10.44 2.52 44.62 1.28
35 36 3.737559 AAGATGGAAGGCACACCATTA 57.262 42.857 10.44 0.00 44.62 1.90
36 37 2.610438 AAGATGGAAGGCACACCATT 57.390 45.000 10.44 0.00 44.62 3.16
37 38 2.225091 TGAAAGATGGAAGGCACACCAT 60.225 45.455 9.23 9.23 46.46 3.55
38 39 1.144708 TGAAAGATGGAAGGCACACCA 59.855 47.619 0.00 0.00 40.63 4.17
39 40 1.909700 TGAAAGATGGAAGGCACACC 58.090 50.000 0.00 0.00 0.00 4.16
40 41 3.084039 TGATGAAAGATGGAAGGCACAC 58.916 45.455 0.00 0.00 0.00 3.82
41 42 3.438216 TGATGAAAGATGGAAGGCACA 57.562 42.857 0.00 0.00 0.00 4.57
42 43 4.996788 ATTGATGAAAGATGGAAGGCAC 57.003 40.909 0.00 0.00 0.00 5.01
43 44 4.581824 GCTATTGATGAAAGATGGAAGGCA 59.418 41.667 0.00 0.00 0.00 4.75
44 45 4.022503 GGCTATTGATGAAAGATGGAAGGC 60.023 45.833 0.00 0.00 0.00 4.35
45 46 4.214971 CGGCTATTGATGAAAGATGGAAGG 59.785 45.833 0.00 0.00 0.00 3.46
46 47 4.818546 ACGGCTATTGATGAAAGATGGAAG 59.181 41.667 0.00 0.00 0.00 3.46
47 48 4.780815 ACGGCTATTGATGAAAGATGGAA 58.219 39.130 0.00 0.00 0.00 3.53
48 49 4.380531 GACGGCTATTGATGAAAGATGGA 58.619 43.478 0.00 0.00 0.00 3.41
49 50 3.185188 CGACGGCTATTGATGAAAGATGG 59.815 47.826 0.00 0.00 0.00 3.51
50 51 3.185188 CCGACGGCTATTGATGAAAGATG 59.815 47.826 0.00 0.00 0.00 2.90
51 52 3.069586 TCCGACGGCTATTGATGAAAGAT 59.930 43.478 9.66 0.00 0.00 2.40
52 53 2.429250 TCCGACGGCTATTGATGAAAGA 59.571 45.455 9.66 0.00 0.00 2.52
53 54 2.821546 TCCGACGGCTATTGATGAAAG 58.178 47.619 9.66 0.00 0.00 2.62
54 55 2.971660 TCCGACGGCTATTGATGAAA 57.028 45.000 9.66 0.00 0.00 2.69
55 56 2.628178 AGATCCGACGGCTATTGATGAA 59.372 45.455 9.66 0.00 0.00 2.57
56 57 2.239400 AGATCCGACGGCTATTGATGA 58.761 47.619 9.66 0.00 0.00 2.92
57 58 2.732412 AGATCCGACGGCTATTGATG 57.268 50.000 9.66 0.00 0.00 3.07
58 59 3.687125 TCTAGATCCGACGGCTATTGAT 58.313 45.455 9.66 0.00 0.00 2.57
59 60 3.136009 TCTAGATCCGACGGCTATTGA 57.864 47.619 9.66 0.00 0.00 2.57
60 61 3.692101 AGATCTAGATCCGACGGCTATTG 59.308 47.826 25.88 0.00 38.58 1.90
61 62 3.692101 CAGATCTAGATCCGACGGCTATT 59.308 47.826 25.88 3.81 38.58 1.73
62 63 3.055021 TCAGATCTAGATCCGACGGCTAT 60.055 47.826 25.88 0.00 38.58 2.97
63 64 2.302157 TCAGATCTAGATCCGACGGCTA 59.698 50.000 25.88 5.01 38.58 3.93
64 65 1.072489 TCAGATCTAGATCCGACGGCT 59.928 52.381 25.88 0.00 38.58 5.52
65 66 1.198178 GTCAGATCTAGATCCGACGGC 59.802 57.143 25.86 13.36 36.06 5.68
68 69 1.874231 TGCGTCAGATCTAGATCCGAC 59.126 52.381 28.37 28.37 40.24 4.79
69 70 2.256117 TGCGTCAGATCTAGATCCGA 57.744 50.000 25.88 19.84 38.58 4.55
70 71 3.437049 TGTATGCGTCAGATCTAGATCCG 59.563 47.826 25.88 22.34 38.58 4.18
71 72 5.378292 TTGTATGCGTCAGATCTAGATCC 57.622 43.478 25.88 12.81 38.58 3.36
72 73 5.344665 GCTTTGTATGCGTCAGATCTAGATC 59.655 44.000 22.92 22.92 38.09 2.75
73 74 5.221322 TGCTTTGTATGCGTCAGATCTAGAT 60.221 40.000 4.47 4.47 0.00 1.98
74 75 4.097892 TGCTTTGTATGCGTCAGATCTAGA 59.902 41.667 0.00 0.00 0.00 2.43
75 76 4.363138 TGCTTTGTATGCGTCAGATCTAG 58.637 43.478 0.00 0.00 0.00 2.43
76 77 4.385358 TGCTTTGTATGCGTCAGATCTA 57.615 40.909 0.00 0.00 0.00 1.98
77 78 3.251479 TGCTTTGTATGCGTCAGATCT 57.749 42.857 0.00 0.00 0.00 2.75
78 79 4.091424 GTTTGCTTTGTATGCGTCAGATC 58.909 43.478 0.00 0.00 0.00 2.75
79 80 3.753272 AGTTTGCTTTGTATGCGTCAGAT 59.247 39.130 0.00 0.00 0.00 2.90
80 81 3.058983 CAGTTTGCTTTGTATGCGTCAGA 60.059 43.478 0.00 0.00 0.00 3.27
81 82 3.228749 CAGTTTGCTTTGTATGCGTCAG 58.771 45.455 0.00 0.00 0.00 3.51
82 83 2.616376 ACAGTTTGCTTTGTATGCGTCA 59.384 40.909 0.00 0.00 0.00 4.35
83 84 3.268013 ACAGTTTGCTTTGTATGCGTC 57.732 42.857 0.00 0.00 0.00 5.19
84 85 3.371168 CAACAGTTTGCTTTGTATGCGT 58.629 40.909 0.00 0.00 0.00 5.24
104 105 3.587923 GGCATCTATTTGCAAAACTGCA 58.412 40.909 25.98 10.04 44.59 4.41
105 106 2.931969 GGGCATCTATTTGCAAAACTGC 59.068 45.455 17.19 19.65 44.59 4.40
106 107 3.928375 GTGGGCATCTATTTGCAAAACTG 59.072 43.478 17.19 11.77 44.59 3.16
107 108 3.577848 TGTGGGCATCTATTTGCAAAACT 59.422 39.130 17.19 2.94 44.59 2.66
108 109 3.924144 TGTGGGCATCTATTTGCAAAAC 58.076 40.909 17.19 6.93 44.59 2.43
109 110 4.822685 ATGTGGGCATCTATTTGCAAAA 57.177 36.364 17.19 0.00 44.59 2.44
110 111 4.822685 AATGTGGGCATCTATTTGCAAA 57.177 36.364 15.44 15.44 44.59 3.68
111 112 4.822685 AAATGTGGGCATCTATTTGCAA 57.177 36.364 0.00 0.00 44.59 4.08
112 113 4.822685 AAAATGTGGGCATCTATTTGCA 57.177 36.364 0.00 0.00 44.59 4.08
137 138 9.349713 ACAAGGAGTTGTTTGTAAATATGAAGA 57.650 29.630 0.00 0.00 45.00 2.87
153 154 3.008375 TGATTGGGAGAGACAAGGAGTTG 59.992 47.826 0.00 0.00 39.82 3.16
154 155 3.251484 TGATTGGGAGAGACAAGGAGTT 58.749 45.455 0.00 0.00 0.00 3.01
155 156 2.836981 CTGATTGGGAGAGACAAGGAGT 59.163 50.000 0.00 0.00 0.00 3.85
156 157 2.419851 GCTGATTGGGAGAGACAAGGAG 60.420 54.545 0.00 0.00 0.00 3.69
157 158 1.556911 GCTGATTGGGAGAGACAAGGA 59.443 52.381 0.00 0.00 0.00 3.36
158 159 1.407989 GGCTGATTGGGAGAGACAAGG 60.408 57.143 0.00 0.00 0.00 3.61
159 160 1.558756 AGGCTGATTGGGAGAGACAAG 59.441 52.381 0.00 0.00 0.00 3.16
160 161 1.661463 AGGCTGATTGGGAGAGACAA 58.339 50.000 0.00 0.00 0.00 3.18
161 162 1.280133 CAAGGCTGATTGGGAGAGACA 59.720 52.381 0.00 0.00 0.00 3.41
162 163 1.280421 ACAAGGCTGATTGGGAGAGAC 59.720 52.381 0.00 0.00 34.36 3.36
163 164 1.556911 GACAAGGCTGATTGGGAGAGA 59.443 52.381 0.00 0.00 34.36 3.10
164 165 1.558756 AGACAAGGCTGATTGGGAGAG 59.441 52.381 0.00 0.00 34.36 3.20
165 166 1.556911 GAGACAAGGCTGATTGGGAGA 59.443 52.381 0.00 0.00 34.36 3.71
166 167 1.558756 AGAGACAAGGCTGATTGGGAG 59.441 52.381 0.00 0.00 34.36 4.30
167 168 1.280133 CAGAGACAAGGCTGATTGGGA 59.720 52.381 0.00 0.00 34.36 4.37
168 169 1.747709 CAGAGACAAGGCTGATTGGG 58.252 55.000 0.00 0.00 34.36 4.12
169 170 1.093159 GCAGAGACAAGGCTGATTGG 58.907 55.000 0.00 0.00 34.36 3.16
170 171 1.093159 GGCAGAGACAAGGCTGATTG 58.907 55.000 0.00 0.00 34.06 2.67
171 172 0.034670 GGGCAGAGACAAGGCTGATT 60.035 55.000 0.00 0.00 34.06 2.57
172 173 1.606531 GGGCAGAGACAAGGCTGAT 59.393 57.895 0.00 0.00 34.06 2.90
173 174 2.596851 GGGGCAGAGACAAGGCTGA 61.597 63.158 0.00 0.00 34.06 4.26
174 175 2.045536 GGGGCAGAGACAAGGCTG 60.046 66.667 0.00 0.00 35.28 4.85
175 176 2.530151 TGGGGCAGAGACAAGGCT 60.530 61.111 0.00 0.00 0.00 4.58
176 177 2.360475 GTGGGGCAGAGACAAGGC 60.360 66.667 0.00 0.00 0.00 4.35
177 178 2.352805 GGTGGGGCAGAGACAAGG 59.647 66.667 0.00 0.00 0.00 3.61
178 179 1.302832 GTGGTGGGGCAGAGACAAG 60.303 63.158 0.00 0.00 0.00 3.16
179 180 1.426251 ATGTGGTGGGGCAGAGACAA 61.426 55.000 0.00 0.00 0.00 3.18
180 181 1.841302 GATGTGGTGGGGCAGAGACA 61.841 60.000 0.00 0.00 0.00 3.41
181 182 1.078143 GATGTGGTGGGGCAGAGAC 60.078 63.158 0.00 0.00 0.00 3.36
182 183 2.300967 GGATGTGGTGGGGCAGAGA 61.301 63.158 0.00 0.00 0.00 3.10
183 184 2.273449 GGATGTGGTGGGGCAGAG 59.727 66.667 0.00 0.00 0.00 3.35
184 185 2.531428 TGGATGTGGTGGGGCAGA 60.531 61.111 0.00 0.00 0.00 4.26
185 186 2.044650 CTGGATGTGGTGGGGCAG 60.045 66.667 0.00 0.00 0.00 4.85
186 187 2.141011 CTTCTGGATGTGGTGGGGCA 62.141 60.000 0.00 0.00 0.00 5.36
187 188 1.379044 CTTCTGGATGTGGTGGGGC 60.379 63.158 0.00 0.00 0.00 5.80
188 189 1.304282 CCTTCTGGATGTGGTGGGG 59.696 63.158 0.00 0.00 34.57 4.96
189 190 1.379044 GCCTTCTGGATGTGGTGGG 60.379 63.158 0.00 0.00 34.57 4.61
190 191 1.379044 GGCCTTCTGGATGTGGTGG 60.379 63.158 0.00 0.00 34.57 4.61
191 192 0.033796 ATGGCCTTCTGGATGTGGTG 60.034 55.000 3.32 0.00 34.57 4.17
192 193 0.033796 CATGGCCTTCTGGATGTGGT 60.034 55.000 3.32 0.00 34.57 4.16
193 194 0.754217 CCATGGCCTTCTGGATGTGG 60.754 60.000 12.64 0.38 34.24 4.17
194 195 0.256752 TCCATGGCCTTCTGGATGTG 59.743 55.000 15.63 0.92 36.63 3.21
195 196 1.002069 TTCCATGGCCTTCTGGATGT 58.998 50.000 18.94 0.00 41.09 3.06
196 197 1.341285 TGTTCCATGGCCTTCTGGATG 60.341 52.381 18.94 7.21 41.09 3.51
197 198 1.002069 TGTTCCATGGCCTTCTGGAT 58.998 50.000 18.94 0.00 41.09 3.41
198 199 0.776810 TTGTTCCATGGCCTTCTGGA 59.223 50.000 15.63 15.63 39.78 3.86
199 200 1.753073 GATTGTTCCATGGCCTTCTGG 59.247 52.381 6.96 8.83 0.00 3.86
200 201 2.731572 AGATTGTTCCATGGCCTTCTG 58.268 47.619 6.96 0.00 0.00 3.02
201 202 4.591321 TTAGATTGTTCCATGGCCTTCT 57.409 40.909 6.96 7.24 0.00 2.85
202 203 4.646492 ACATTAGATTGTTCCATGGCCTTC 59.354 41.667 6.96 0.00 0.00 3.46
203 204 4.613437 ACATTAGATTGTTCCATGGCCTT 58.387 39.130 6.96 0.00 0.00 4.35
204 205 4.255510 ACATTAGATTGTTCCATGGCCT 57.744 40.909 6.96 0.00 0.00 5.19
205 206 4.936891 GAACATTAGATTGTTCCATGGCC 58.063 43.478 6.96 0.00 46.30 5.36
213 214 5.401550 CATTGCACGGAACATTAGATTGTT 58.598 37.500 0.00 0.00 42.37 2.83
214 215 4.675146 GCATTGCACGGAACATTAGATTGT 60.675 41.667 3.15 0.00 0.00 2.71
215 216 3.792956 GCATTGCACGGAACATTAGATTG 59.207 43.478 3.15 0.00 0.00 2.67
216 217 3.443329 TGCATTGCACGGAACATTAGATT 59.557 39.130 7.38 0.00 31.71 2.40
217 218 3.016031 TGCATTGCACGGAACATTAGAT 58.984 40.909 7.38 0.00 31.71 1.98
218 219 2.431454 TGCATTGCACGGAACATTAGA 58.569 42.857 7.38 0.00 31.71 2.10
219 220 2.917701 TGCATTGCACGGAACATTAG 57.082 45.000 7.38 0.00 31.71 1.73
233 234 7.633553 TACTGACTAGTAAGATGCATGTGCATT 60.634 37.037 20.29 9.98 47.00 3.56
235 236 4.081476 ACTGACTAGTAAGATGCATGTGCA 60.081 41.667 14.67 10.44 45.28 4.57
236 237 4.437239 ACTGACTAGTAAGATGCATGTGC 58.563 43.478 14.67 0.00 37.14 4.57
237 238 6.564328 TGTACTGACTAGTAAGATGCATGTG 58.436 40.000 14.67 0.00 40.89 3.21
238 239 6.775594 TGTACTGACTAGTAAGATGCATGT 57.224 37.500 14.67 0.00 40.89 3.21
239 240 7.976175 TCTTTGTACTGACTAGTAAGATGCATG 59.024 37.037 14.67 6.13 40.89 4.06
240 241 8.067751 TCTTTGTACTGACTAGTAAGATGCAT 57.932 34.615 14.67 0.00 40.89 3.96
241 242 7.393515 TCTCTTTGTACTGACTAGTAAGATGCA 59.606 37.037 14.67 6.65 40.89 3.96
242 243 7.763356 TCTCTTTGTACTGACTAGTAAGATGC 58.237 38.462 14.67 4.22 40.89 3.91
246 247 9.413048 CCTTTTCTCTTTGTACTGACTAGTAAG 57.587 37.037 5.61 5.61 40.89 2.34
247 248 8.365647 CCCTTTTCTCTTTGTACTGACTAGTAA 58.634 37.037 0.00 0.00 40.89 2.24
248 249 7.525029 GCCCTTTTCTCTTTGTACTGACTAGTA 60.525 40.741 0.00 0.00 38.36 1.82
249 250 6.741801 GCCCTTTTCTCTTTGTACTGACTAGT 60.742 42.308 0.00 0.00 40.99 2.57
250 251 5.639931 GCCCTTTTCTCTTTGTACTGACTAG 59.360 44.000 0.00 0.00 0.00 2.57
251 252 5.548406 GCCCTTTTCTCTTTGTACTGACTA 58.452 41.667 0.00 0.00 0.00 2.59
252 253 4.390264 GCCCTTTTCTCTTTGTACTGACT 58.610 43.478 0.00 0.00 0.00 3.41
253 254 3.186613 CGCCCTTTTCTCTTTGTACTGAC 59.813 47.826 0.00 0.00 0.00 3.51
254 255 3.399330 CGCCCTTTTCTCTTTGTACTGA 58.601 45.455 0.00 0.00 0.00 3.41
255 256 2.484264 CCGCCCTTTTCTCTTTGTACTG 59.516 50.000 0.00 0.00 0.00 2.74
256 257 2.370849 TCCGCCCTTTTCTCTTTGTACT 59.629 45.455 0.00 0.00 0.00 2.73
257 258 2.774687 TCCGCCCTTTTCTCTTTGTAC 58.225 47.619 0.00 0.00 0.00 2.90
258 259 3.408634 CTTCCGCCCTTTTCTCTTTGTA 58.591 45.455 0.00 0.00 0.00 2.41
259 260 2.230660 CTTCCGCCCTTTTCTCTTTGT 58.769 47.619 0.00 0.00 0.00 2.83
260 261 1.541588 CCTTCCGCCCTTTTCTCTTTG 59.458 52.381 0.00 0.00 0.00 2.77
261 262 1.423921 TCCTTCCGCCCTTTTCTCTTT 59.576 47.619 0.00 0.00 0.00 2.52
262 263 1.064825 TCCTTCCGCCCTTTTCTCTT 58.935 50.000 0.00 0.00 0.00 2.85
263 264 1.064825 TTCCTTCCGCCCTTTTCTCT 58.935 50.000 0.00 0.00 0.00 3.10
264 265 1.905637 TTTCCTTCCGCCCTTTTCTC 58.094 50.000 0.00 0.00 0.00 2.87
265 266 1.961394 GTTTTCCTTCCGCCCTTTTCT 59.039 47.619 0.00 0.00 0.00 2.52
266 267 1.684450 TGTTTTCCTTCCGCCCTTTTC 59.316 47.619 0.00 0.00 0.00 2.29
267 268 1.783071 TGTTTTCCTTCCGCCCTTTT 58.217 45.000 0.00 0.00 0.00 2.27
268 269 1.411246 GTTGTTTTCCTTCCGCCCTTT 59.589 47.619 0.00 0.00 0.00 3.11
269 270 1.037493 GTTGTTTTCCTTCCGCCCTT 58.963 50.000 0.00 0.00 0.00 3.95
270 271 1.170290 CGTTGTTTTCCTTCCGCCCT 61.170 55.000 0.00 0.00 0.00 5.19
271 272 1.284715 CGTTGTTTTCCTTCCGCCC 59.715 57.895 0.00 0.00 0.00 6.13
272 273 0.382873 AACGTTGTTTTCCTTCCGCC 59.617 50.000 0.00 0.00 0.00 6.13
273 274 2.288729 AGTAACGTTGTTTTCCTTCCGC 59.711 45.455 11.99 0.00 0.00 5.54
274 275 4.541085 AAGTAACGTTGTTTTCCTTCCG 57.459 40.909 11.99 0.00 0.00 4.30
275 276 7.031372 AGAAAAAGTAACGTTGTTTTCCTTCC 58.969 34.615 26.27 13.50 39.64 3.46
276 277 8.456904 AAGAAAAAGTAACGTTGTTTTCCTTC 57.543 30.769 26.27 19.13 39.64 3.46
277 278 9.563898 CTAAGAAAAAGTAACGTTGTTTTCCTT 57.436 29.630 26.27 22.82 39.64 3.36
278 279 8.186163 CCTAAGAAAAAGTAACGTTGTTTTCCT 58.814 33.333 26.27 21.12 39.64 3.36
279 280 7.433131 CCCTAAGAAAAAGTAACGTTGTTTTCC 59.567 37.037 26.27 15.77 39.64 3.13
280 281 8.183536 TCCCTAAGAAAAAGTAACGTTGTTTTC 58.816 33.333 24.45 24.45 39.28 2.29
281 282 8.054152 TCCCTAAGAAAAAGTAACGTTGTTTT 57.946 30.769 11.99 13.40 0.00 2.43
282 283 7.628769 TCCCTAAGAAAAAGTAACGTTGTTT 57.371 32.000 11.99 7.82 0.00 2.83
283 284 7.628769 TTCCCTAAGAAAAAGTAACGTTGTT 57.371 32.000 11.99 1.07 0.00 2.83
284 285 7.628769 TTTCCCTAAGAAAAAGTAACGTTGT 57.371 32.000 11.99 0.00 41.56 3.32
302 303 8.474831 GCCAATAATAGTAACATTGTTTTCCCT 58.525 33.333 7.45 2.33 0.00 4.20
303 304 8.474831 AGCCAATAATAGTAACATTGTTTTCCC 58.525 33.333 7.45 0.00 0.00 3.97
304 305 9.869757 AAGCCAATAATAGTAACATTGTTTTCC 57.130 29.630 7.45 0.00 0.00 3.13
358 361 2.375509 CCCCCTCTTTACTCCAACTGTT 59.624 50.000 0.00 0.00 0.00 3.16
397 400 3.891366 ACTTGCAAGATAAGTGGCAGTTT 59.109 39.130 32.50 1.82 37.03 2.66
1350 1422 4.760047 TTGGCCTCCTTCTCGCGC 62.760 66.667 3.32 0.00 0.00 6.86
1644 1716 1.301479 GACCTTGGTGTCGGTGTCC 60.301 63.158 0.00 0.00 32.62 4.02
1785 1857 4.444838 CGGATGAACGGGCGGTGA 62.445 66.667 0.00 0.00 0.00 4.02
2083 2155 4.337555 CACCTCCTTCTGGCAATTTATGAG 59.662 45.833 0.00 0.00 0.00 2.90
2240 2312 9.791820 CAAGCAGATACAAAATGATCAAACATA 57.208 29.630 0.00 0.00 0.00 2.29
2241 2313 7.277098 GCAAGCAGATACAAAATGATCAAACAT 59.723 33.333 0.00 0.00 0.00 2.71
2250 2322 9.740239 AATATAACAGCAAGCAGATACAAAATG 57.260 29.630 0.00 0.00 0.00 2.32
2294 2366 6.481976 CAGATTTGCCTACGTAACCATATTCA 59.518 38.462 0.00 0.00 0.00 2.57
2394 2466 3.695830 TTTTCCCTAGCACCTACACTG 57.304 47.619 0.00 0.00 0.00 3.66
2410 2482 6.635166 ACACACACAAAATAACGGTTTTTC 57.365 33.333 0.00 0.00 0.00 2.29
2431 2504 4.048504 CACAAACAGACAGATGACGTACA 58.951 43.478 0.00 0.00 0.00 2.90
2572 2647 1.866601 CAAACAGACAGATGACGCACA 59.133 47.619 0.00 0.00 0.00 4.57
2628 2703 6.101734 AGCCTTTCCATATCTAACTGGATGAA 59.898 38.462 0.00 0.00 41.09 2.57
2760 2835 7.936496 TGGATTGCTTGTTCATCTTATACAA 57.064 32.000 0.00 0.00 0.00 2.41
2761 2836 7.774625 TCATGGATTGCTTGTTCATCTTATACA 59.225 33.333 0.00 0.00 0.00 2.29
2771 2846 4.437930 GCTGTAGTCATGGATTGCTTGTTC 60.438 45.833 0.00 0.00 0.00 3.18
2781 2857 3.814625 TGTTTTGTGCTGTAGTCATGGA 58.185 40.909 0.00 0.00 0.00 3.41
2855 2932 5.738118 ATTTTTCACAAACACTGGCAATG 57.262 34.783 0.00 0.00 0.00 2.82
2906 2983 0.685458 ATAGGCTGGCAGCTTTTGGG 60.685 55.000 35.73 0.00 41.99 4.12
2956 3033 3.720002 AGAAACCAAAGGTAGGGAAGACA 59.280 43.478 0.00 0.00 33.12 3.41
2962 3039 7.444629 GTTTACTAAGAAACCAAAGGTAGGG 57.555 40.000 0.00 0.00 33.12 3.53
2973 3050 6.263617 TGGTGGTTGATGGTTTACTAAGAAAC 59.736 38.462 0.00 0.00 38.38 2.78
3089 3166 1.134007 CATGGATGGCTAGCTTCCACA 60.134 52.381 29.94 15.43 42.09 4.17
3102 3179 1.407618 CATGGTTCTGGCACATGGATG 59.592 52.381 7.68 0.00 38.58 3.51
3212 3313 7.823149 ACAAACACTATTCGGTATTCACTAC 57.177 36.000 0.00 0.00 0.00 2.73
3283 3388 7.868922 CACAGTAACACAAATACCTAGTACACA 59.131 37.037 0.00 0.00 0.00 3.72
3284 3389 7.869429 ACACAGTAACACAAATACCTAGTACAC 59.131 37.037 0.00 0.00 0.00 2.90
3287 3392 8.180706 TCACACAGTAACACAAATACCTAGTA 57.819 34.615 0.00 0.00 0.00 1.82
3306 3411 5.559770 TGCAGAATAGGATTCTTTCACACA 58.440 37.500 0.00 0.00 0.00 3.72
3320 3425 9.941325 AAGACATCCTATCTAATTGCAGAATAG 57.059 33.333 0.00 0.00 0.00 1.73
3373 3478 4.202172 TGAAACGTGTGGATCAGACACTAA 60.202 41.667 19.47 4.11 41.37 2.24
3389 3494 3.192633 AGAACAAAAGGCTGTTGAAACGT 59.807 39.130 23.90 0.00 39.63 3.99
3391 3496 4.201714 GCAAGAACAAAAGGCTGTTGAAAC 60.202 41.667 23.90 13.22 39.63 2.78
3437 3542 7.246674 AGTGCCAAAATATACAGACAATACG 57.753 36.000 0.00 0.00 0.00 3.06
3546 3655 5.185454 TCATGTCAATCCATACACAACCTC 58.815 41.667 0.00 0.00 0.00 3.85
3548 3657 5.640732 GTTCATGTCAATCCATACACAACC 58.359 41.667 0.00 0.00 0.00 3.77
3658 3767 3.008330 AGTGTAGCTTGATCTACGACGT 58.992 45.455 5.52 5.52 41.29 4.34
3683 3792 4.887071 TGAAACTAGGCAGCAAAAGAAAGA 59.113 37.500 0.00 0.00 0.00 2.52
3684 3793 5.186996 TGAAACTAGGCAGCAAAAGAAAG 57.813 39.130 0.00 0.00 0.00 2.62
3685 3794 5.789643 ATGAAACTAGGCAGCAAAAGAAA 57.210 34.783 0.00 0.00 0.00 2.52
3686 3795 5.068987 ACAATGAAACTAGGCAGCAAAAGAA 59.931 36.000 0.00 0.00 0.00 2.52
3833 3942 7.664318 AGATTTACATTCAAACCGGTCTTACTT 59.336 33.333 8.04 0.00 0.00 2.24
3901 4010 1.065551 GCACAGATCCAATTAACCCGC 59.934 52.381 0.00 0.00 0.00 6.13
3924 4033 3.885297 CACTTCCCGCTCATCCATAAAAT 59.115 43.478 0.00 0.00 0.00 1.82
3946 4055 7.275920 AGTAATTGTTCTCTATCCACATCCAC 58.724 38.462 0.00 0.00 0.00 4.02
3993 4102 1.145738 ACAAGCCCTCACATGGACTTT 59.854 47.619 0.00 0.00 0.00 2.66
3995 4104 0.326264 GACAAGCCCTCACATGGACT 59.674 55.000 0.00 0.00 0.00 3.85
4074 4183 5.656213 ATAGGTGCGTACAAGTTAAGTCT 57.344 39.130 5.86 0.00 0.00 3.24
4080 4191 5.544650 ACAGTTTATAGGTGCGTACAAGTT 58.455 37.500 5.86 0.00 0.00 2.66
4084 4195 3.680937 GCAACAGTTTATAGGTGCGTACA 59.319 43.478 5.86 0.00 0.00 2.90
4683 4794 9.758651 ATGGTTCTTGTTAAAAGATGGTAAAAC 57.241 29.630 0.00 0.00 0.00 2.43
4706 4817 5.931724 GGGAAGTTAAATTGTTTGTGGATGG 59.068 40.000 0.00 0.00 0.00 3.51
4707 4818 6.758254 AGGGAAGTTAAATTGTTTGTGGATG 58.242 36.000 0.00 0.00 0.00 3.51
4708 4819 6.994421 AGGGAAGTTAAATTGTTTGTGGAT 57.006 33.333 0.00 0.00 0.00 3.41
4709 4820 7.726291 TGATAGGGAAGTTAAATTGTTTGTGGA 59.274 33.333 0.00 0.00 0.00 4.02
4710 4821 7.891561 TGATAGGGAAGTTAAATTGTTTGTGG 58.108 34.615 0.00 0.00 0.00 4.17
4711 4822 8.576442 ACTGATAGGGAAGTTAAATTGTTTGTG 58.424 33.333 0.00 0.00 0.00 3.33
4712 4823 8.706322 ACTGATAGGGAAGTTAAATTGTTTGT 57.294 30.769 0.00 0.00 0.00 2.83
4713 4824 8.792633 TGACTGATAGGGAAGTTAAATTGTTTG 58.207 33.333 0.00 0.00 0.00 2.93
4714 4825 8.934023 TGACTGATAGGGAAGTTAAATTGTTT 57.066 30.769 0.00 0.00 0.00 2.83
4716 4827 9.533831 AATTGACTGATAGGGAAGTTAAATTGT 57.466 29.630 0.00 0.00 29.23 2.71
4723 4834 9.170890 TGGATATAATTGACTGATAGGGAAGTT 57.829 33.333 0.00 0.00 0.00 2.66
4724 4835 8.742125 TGGATATAATTGACTGATAGGGAAGT 57.258 34.615 0.00 0.00 0.00 3.01
4791 4902 5.005779 CACCATCGTTGCAAATAGTAGACTC 59.994 44.000 0.00 0.00 0.00 3.36
4950 5069 6.377146 ACATAAAAGAAAATGCCCATACTCGT 59.623 34.615 0.00 0.00 0.00 4.18
5005 5127 1.064825 AGTCTCCGTCAAAACCCCAT 58.935 50.000 0.00 0.00 0.00 4.00
5007 5129 2.038164 ACTAAGTCTCCGTCAAAACCCC 59.962 50.000 0.00 0.00 0.00 4.95
5026 5148 5.480422 AGAAAAGTTTGAAGTTTGACCCACT 59.520 36.000 0.00 0.00 32.20 4.00
5234 5370 9.533831 ACAATTTAACTTCCCTATCAGTCAAAT 57.466 29.630 0.00 0.00 0.00 2.32
5235 5371 8.792633 CACAATTTAACTTCCCTATCAGTCAAA 58.207 33.333 0.00 0.00 0.00 2.69
5287 5423 1.067000 CATTCCAATTTGGCGGCTCAA 60.067 47.619 11.43 3.31 37.47 3.02
5445 5582 5.477984 ACATCCACAAACAATGCTCATAAGT 59.522 36.000 0.00 0.00 0.00 2.24
5532 5669 3.166560 AGCTTCTTGATGGGCTTTCTT 57.833 42.857 0.00 0.00 0.00 2.52
5563 5700 7.612244 GTGACAGGCACTCCTAATATCTATAGA 59.388 40.741 4.57 4.57 41.93 1.98
5646 5783 3.681593 TGTAGCAAAGAAACCCGCTTAT 58.318 40.909 0.00 0.00 35.93 1.73
5713 5850 8.952278 TCGGAAAGCATGTTATAAAGTACAAAT 58.048 29.630 0.00 0.00 0.00 2.32
5737 5874 2.691409 TACAGGAGAAAGGGCAATCG 57.309 50.000 0.00 0.00 0.00 3.34
5758 5895 3.769844 TGACACCTAACCAGGATCTCTTC 59.230 47.826 0.00 0.00 45.91 2.87
5878 6016 2.543777 TGTACCACTGCCACTTCTTC 57.456 50.000 0.00 0.00 0.00 2.87
5996 6134 6.096036 ACTGACAGATCGACAGAACAAATAG 58.904 40.000 10.08 0.00 39.43 1.73
6011 6149 3.260128 TCTGATGAGCACAACTGACAGAT 59.740 43.478 10.08 0.00 0.00 2.90
6038 6181 3.827817 AGTCCGACATCCCAGGATATA 57.172 47.619 0.00 0.00 36.34 0.86
6053 6196 4.442706 AGTATTTGACATGCCTTAGTCCG 58.557 43.478 0.00 0.00 33.89 4.79
6085 6228 1.304547 CACGGGCCCAATAAACCCA 60.305 57.895 24.92 0.00 44.49 4.51
6141 6284 2.569059 CGAGGGAAATCAGATGCACAT 58.431 47.619 0.00 0.00 0.00 3.21
6147 6290 1.709994 GGGGGCGAGGGAAATCAGAT 61.710 60.000 0.00 0.00 0.00 2.90
6233 6392 1.550524 TCCAGCGCTAGCCATATTAGG 59.449 52.381 10.99 2.58 46.67 2.69
6259 6418 1.068588 GTGCATGCAGCCAATCATCAT 59.931 47.619 23.41 0.00 44.83 2.45
6324 6483 4.218200 CCAACAACCAATCACATTAGCTCA 59.782 41.667 0.00 0.00 0.00 4.26
6367 6528 5.358160 ACCAAGGCAGAATATTAAAGCTGAC 59.642 40.000 6.16 3.39 36.65 3.51
6431 6592 3.011482 ACCACTAGCACTAACTACTCCCT 59.989 47.826 0.00 0.00 0.00 4.20
6499 6660 4.294347 AGGGAGCAGCTAGTTCTCTATTT 58.706 43.478 0.00 0.00 36.40 1.40
6512 6673 0.107654 ATGAAACGGTAGGGAGCAGC 60.108 55.000 0.00 0.00 0.00 5.25
6535 6696 6.015010 AGAGTAGCATGAAACAGACTAACAGT 60.015 38.462 0.00 0.00 0.00 3.55
6537 6698 6.346477 AGAGTAGCATGAAACAGACTAACA 57.654 37.500 0.00 0.00 0.00 2.41
6611 6772 6.950545 TGTGTAATCAAACGTGGTTCTTAAG 58.049 36.000 0.00 0.00 0.00 1.85
6637 6798 1.066358 GGAACGGAGGGAGTACAAAGG 60.066 57.143 0.00 0.00 0.00 3.11
6639 6800 2.019807 AGGAACGGAGGGAGTACAAA 57.980 50.000 0.00 0.00 0.00 2.83
6645 6806 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
6646 6807 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
6647 6808 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6648 6809 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
6649 6810 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
6650 6811 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
6651 6812 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
6664 6825 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
6665 6826 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
6666 6827 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
6667 6828 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
6668 6829 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
6669 6830 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
6670 6831 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
6671 6832 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
6672 6833 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
6673 6834 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
6674 6835 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
6675 6836 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
6676 6837 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
6677 6838 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
6678 6839 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
6679 6840 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
6680 6841 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
6681 6842 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
6682 6843 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
6683 6844 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
6684 6845 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
6685 6846 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
6686 6847 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
6687 6848 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
6688 6849 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
6689 6850 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
6690 6851 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
6691 6852 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
6692 6853 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
6693 6854 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
6694 6855 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
6695 6856 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
6696 6857 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
6697 6858 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
6698 6859 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
6699 6860 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
6700 6861 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
6701 6862 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
6702 6863 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
6730 6891 9.476928 GGACTACCACCTGTATATAGACATATT 57.523 37.037 0.00 0.00 35.97 1.28
6731 6892 8.621073 TGGACTACCACCTGTATATAGACATAT 58.379 37.037 0.00 0.00 41.77 1.78
6732 6893 7.992295 TGGACTACCACCTGTATATAGACATA 58.008 38.462 0.00 0.00 41.77 2.29
6733 6894 6.860034 TGGACTACCACCTGTATATAGACAT 58.140 40.000 0.00 0.00 41.77 3.06
6734 6895 6.270219 TGGACTACCACCTGTATATAGACA 57.730 41.667 0.00 0.00 41.77 3.41
6752 6913 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
6753 6914 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
6771 6932 9.025041 CCCTCTGTTCCTAAATATTTGTCTTTT 57.975 33.333 11.05 0.00 0.00 2.27
6772 6933 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
6773 6934 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
6774 6935 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
6775 6936 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
6776 6937 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
6782 6943 8.875168 CAGAATATACTCCCTCTGTTCCTAAAT 58.125 37.037 0.00 0.00 32.38 1.40
6783 6944 7.844779 ACAGAATATACTCCCTCTGTTCCTAAA 59.155 37.037 0.54 0.00 44.71 1.85
6784 6945 7.287927 CACAGAATATACTCCCTCTGTTCCTAA 59.712 40.741 3.27 0.00 44.71 2.69
6785 6946 6.778069 CACAGAATATACTCCCTCTGTTCCTA 59.222 42.308 3.27 0.00 44.71 2.94
6786 6947 5.600484 CACAGAATATACTCCCTCTGTTCCT 59.400 44.000 3.27 0.00 44.71 3.36
6787 6948 5.598830 TCACAGAATATACTCCCTCTGTTCC 59.401 44.000 3.27 0.00 44.71 3.62
6788 6949 6.716934 TCACAGAATATACTCCCTCTGTTC 57.283 41.667 3.27 0.00 44.71 3.18
6789 6950 6.463614 GCATCACAGAATATACTCCCTCTGTT 60.464 42.308 3.27 0.00 44.71 3.16
6791 6952 5.011431 TGCATCACAGAATATACTCCCTCTG 59.989 44.000 0.00 0.00 40.92 3.35
6792 6953 5.150715 TGCATCACAGAATATACTCCCTCT 58.849 41.667 0.00 0.00 0.00 3.69
6793 6954 5.474578 TGCATCACAGAATATACTCCCTC 57.525 43.478 0.00 0.00 0.00 4.30
6794 6955 5.280368 CCATGCATCACAGAATATACTCCCT 60.280 44.000 0.00 0.00 0.00 4.20
6795 6956 4.940046 CCATGCATCACAGAATATACTCCC 59.060 45.833 0.00 0.00 0.00 4.30
6796 6957 4.394300 GCCATGCATCACAGAATATACTCC 59.606 45.833 0.00 0.00 0.00 3.85
6797 6958 4.394300 GGCCATGCATCACAGAATATACTC 59.606 45.833 0.00 0.00 0.00 2.59
6798 6959 4.202493 TGGCCATGCATCACAGAATATACT 60.202 41.667 0.00 0.00 0.00 2.12
6799 6960 4.074259 TGGCCATGCATCACAGAATATAC 58.926 43.478 0.00 0.00 0.00 1.47
6800 6961 4.074259 GTGGCCATGCATCACAGAATATA 58.926 43.478 9.72 0.00 0.00 0.86
6801 6962 2.889045 GTGGCCATGCATCACAGAATAT 59.111 45.455 9.72 0.00 0.00 1.28
6849 7010 9.965748 CCTGCCAAAAATAAATAAACATTAACG 57.034 29.630 0.00 0.00 0.00 3.18
6868 7029 2.979676 CGCTCAGCAACCTGCCAA 60.980 61.111 0.00 0.00 46.52 4.52
6916 7077 3.296322 TTTTGGGCAATCAAGCTTACG 57.704 42.857 0.00 0.00 34.17 3.18
7088 7249 7.035612 TCTTTGGCTTTTTCTTCTTTCTCAAC 58.964 34.615 0.00 0.00 0.00 3.18
7172 7333 1.205417 CAAAACCATGTCATCCCCAGC 59.795 52.381 0.00 0.00 0.00 4.85
7370 7531 5.741388 AAAACAAAGACTCAGCAGTACAG 57.259 39.130 0.00 0.00 30.63 2.74
7442 7603 6.575162 AGTGTCCATAAACAATTGGAAGTC 57.425 37.500 10.83 0.00 43.42 3.01
7501 7662 6.072119 TGTCTACTTATATGGATGCTGGTACG 60.072 42.308 0.00 0.00 0.00 3.67
7647 7808 1.965930 GATGAACGCACCAGCACCA 60.966 57.895 0.00 0.00 42.27 4.17
7648 7809 1.237285 AAGATGAACGCACCAGCACC 61.237 55.000 0.00 0.00 42.27 5.01
7649 7810 1.438651 TAAGATGAACGCACCAGCAC 58.561 50.000 0.00 0.00 42.27 4.40
7650 7811 2.093500 AGATAAGATGAACGCACCAGCA 60.093 45.455 0.00 0.00 42.27 4.41
7651 7812 2.555199 AGATAAGATGAACGCACCAGC 58.445 47.619 0.00 0.00 37.42 4.85
7652 7813 4.631377 TCAAAGATAAGATGAACGCACCAG 59.369 41.667 0.00 0.00 0.00 4.00
7653 7814 4.574892 TCAAAGATAAGATGAACGCACCA 58.425 39.130 0.00 0.00 0.00 4.17
7654 7815 5.504665 CCATCAAAGATAAGATGAACGCACC 60.505 44.000 4.12 0.00 43.28 5.01
7655 7816 5.505286 CCATCAAAGATAAGATGAACGCAC 58.495 41.667 4.12 0.00 43.28 5.34
7656 7817 4.035558 GCCATCAAAGATAAGATGAACGCA 59.964 41.667 4.12 0.00 43.28 5.24
7657 7818 4.274459 AGCCATCAAAGATAAGATGAACGC 59.726 41.667 4.12 0.17 43.28 4.84
7658 7819 5.998454 AGCCATCAAAGATAAGATGAACG 57.002 39.130 4.12 0.00 43.28 3.95
7761 7925 4.655963 GCATAGATAGGAAGAATTGGCCA 58.344 43.478 0.00 0.00 0.00 5.36
7804 7971 0.381801 GCAACAAGACTGTGGTGGTG 59.618 55.000 1.87 1.87 36.67 4.17
7805 7972 0.255890 AGCAACAAGACTGTGGTGGT 59.744 50.000 2.74 2.74 41.99 4.16
7806 7973 1.392589 AAGCAACAAGACTGTGGTGG 58.607 50.000 5.28 0.00 36.67 4.61
7878 8045 7.180051 AGGGCAAACAATGAAGGATTAATACAA 59.820 33.333 0.00 0.00 0.00 2.41
7917 8088 2.292828 ACTTGCACTAGCCCAATTGT 57.707 45.000 4.43 0.00 41.13 2.71
7931 8102 3.142174 AGCTCACTGGTTTTCTACTTGC 58.858 45.455 0.00 0.00 0.00 4.01
8084 8276 7.195374 ACTCCTACAGTGAGCCATTTTATTA 57.805 36.000 0.00 0.00 32.26 0.98
8100 8292 5.237815 CAGCTGATTACAACAACTCCTACA 58.762 41.667 8.42 0.00 0.00 2.74
8143 8336 2.596851 GGGAGAGGCACTGCTTCCA 61.597 63.158 9.43 0.00 41.55 3.53
8170 8363 2.490903 ACTGTCATTTGATCCAGCTTGC 59.509 45.455 0.00 0.00 0.00 4.01
8173 8366 3.944015 GCTAACTGTCATTTGATCCAGCT 59.056 43.478 0.00 0.00 0.00 4.24
8175 8368 3.242543 GCGCTAACTGTCATTTGATCCAG 60.243 47.826 0.00 0.00 0.00 3.86
8182 8375 2.373540 TACCGCGCTAACTGTCATTT 57.626 45.000 5.56 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.