Multiple sequence alignment - TraesCS4B01G025500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G025500 chr4B 100.000 5382 0 0 1 5382 18166744 18161363 0.000000e+00 9939.0
1 TraesCS4B01G025500 chr4A 95.526 2414 78 14 2274 4684 593916673 593919059 0.000000e+00 3832.0
2 TraesCS4B01G025500 chr4A 94.403 2269 95 14 1 2252 593914425 593916678 0.000000e+00 3458.0
3 TraesCS4B01G025500 chr4A 85.849 106 14 1 4804 4909 708693616 708693512 1.580000e-20 111.0
4 TraesCS4B01G025500 chr4D 95.660 2166 76 5 2274 4436 9498110 9495960 0.000000e+00 3463.0
5 TraesCS4B01G025500 chr4D 95.887 1556 56 7 375 1924 9499938 9498385 0.000000e+00 2512.0
6 TraesCS4B01G025500 chr4D 92.429 317 21 3 1 316 9500260 9499946 2.960000e-122 449.0
7 TraesCS4B01G025500 chr4D 94.366 284 15 1 1973 2255 9498385 9498102 8.280000e-118 435.0
8 TraesCS4B01G025500 chr4D 88.462 260 8 4 4434 4692 9495879 9495641 1.470000e-75 294.0
9 TraesCS4B01G025500 chr4D 90.566 159 14 1 4758 4916 9495417 9495260 5.460000e-50 209.0
10 TraesCS4B01G025500 chr4D 82.645 242 37 4 4911 5151 431198275 431198512 5.460000e-50 209.0
11 TraesCS4B01G025500 chr4D 94.595 74 3 1 5161 5233 9495264 9495191 4.410000e-21 113.0
12 TraesCS4B01G025500 chr1D 84.553 246 35 3 4905 5150 448244025 448243783 1.940000e-59 241.0
13 TraesCS4B01G025500 chr1A 84.519 239 35 2 4901 5139 544129071 544128835 9.010000e-58 235.0
14 TraesCS4B01G025500 chr5B 82.000 250 39 6 4908 5153 317297426 317297179 1.960000e-49 207.0
15 TraesCS4B01G025500 chr5B 72.280 671 138 30 3738 4380 7542081 7541431 1.200000e-36 165.0
16 TraesCS4B01G025500 chr3A 81.423 253 37 9 4911 5158 724826868 724826621 1.180000e-46 198.0
17 TraesCS4B01G025500 chr1B 80.992 242 44 2 4911 5151 323935890 323936130 1.980000e-44 191.0
18 TraesCS4B01G025500 chr3B 80.328 244 43 5 4910 5151 783000053 783000293 4.280000e-41 180.0
19 TraesCS4B01G025500 chr3D 80.672 238 34 10 4911 5141 92782917 92782685 1.990000e-39 174.0
20 TraesCS4B01G025500 chr7B 79.352 247 46 5 4911 5155 651171678 651171921 9.270000e-38 169.0
21 TraesCS4B01G025500 chr7A 77.358 212 31 9 4699 4909 25109681 25109876 5.700000e-20 110.0
22 TraesCS4B01G025500 chr6B 76.316 228 36 9 4693 4909 719905352 719905572 7.370000e-19 106.0
23 TraesCS4B01G025500 chrUn 82.075 106 18 1 4804 4909 90001285 90001181 7.420000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G025500 chr4B 18161363 18166744 5381 True 9939.000000 9939 100.000000 1 5382 1 chr4B.!!$R1 5381
1 TraesCS4B01G025500 chr4A 593914425 593919059 4634 False 3645.000000 3832 94.964500 1 4684 2 chr4A.!!$F1 4683
2 TraesCS4B01G025500 chr4D 9495191 9500260 5069 True 1067.857143 3463 93.137857 1 5233 7 chr4D.!!$R1 5232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 757 0.511221 GTGCGTGTGTGTGTGTATCC 59.489 55.000 0.00 0.0 0.00 2.59 F
1071 1084 0.106149 ACTCACCAGACACGGGAAAC 59.894 55.000 0.00 0.0 0.00 2.78 F
1590 1603 0.378257 CACGGGCAATCAGGAATTCG 59.622 55.000 0.00 0.0 0.00 3.34 F
2369 2390 1.280457 AGGTGGGTCTAGGCTTCTTG 58.720 55.000 0.00 0.0 0.00 3.02 F
3943 3967 1.228737 GGGCCAGGCTTACCAAACA 60.229 57.895 12.43 0.0 39.06 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 1756 0.114364 TGGCAGTAGACTCCTGTGGA 59.886 55.000 0.0 0.0 32.41 4.02 R
2601 2622 1.407989 CCATTCTTCCTGACAGCTCCC 60.408 57.143 0.0 0.0 0.00 4.30 R
3278 3299 0.249868 AAAAGCGAAAAGGGGCAAGC 60.250 50.000 0.0 0.0 0.00 4.01 R
4043 4067 0.321653 CCCGGTCTTTGGTCCTTCAG 60.322 60.000 0.0 0.0 0.00 3.02 R
5240 5506 0.034198 TCCCGCACGAATGTCTGAAA 59.966 50.000 0.0 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.765510 GTTCACCACTCCCACCTCTT 59.234 55.000 0.00 0.00 0.00 2.85
31 32 0.764890 CACCACTCCCACCTCTTTCA 59.235 55.000 0.00 0.00 0.00 2.69
38 39 5.303971 CACTCCCACCTCTTTCATATCATC 58.696 45.833 0.00 0.00 0.00 2.92
39 40 4.971282 ACTCCCACCTCTTTCATATCATCA 59.029 41.667 0.00 0.00 0.00 3.07
44 45 7.122650 TCCCACCTCTTTCATATCATCAAAAAC 59.877 37.037 0.00 0.00 0.00 2.43
71 72 2.422276 AAATCCGAGCTGCAAACAAC 57.578 45.000 1.02 0.00 0.00 3.32
73 74 0.877071 ATCCGAGCTGCAAACAACTG 59.123 50.000 1.02 0.00 0.00 3.16
75 76 1.283793 CGAGCTGCAAACAACTGGG 59.716 57.895 1.02 0.00 0.00 4.45
81 84 2.825205 CTGCAAACAACTGGGAAAAGG 58.175 47.619 0.00 0.00 0.00 3.11
117 120 2.029623 AGCCATCTGATGCCATTTCAC 58.970 47.619 12.17 0.00 0.00 3.18
130 133 4.698780 TGCCATTTCACTCATCTCTTCTTG 59.301 41.667 0.00 0.00 0.00 3.02
142 145 4.148128 TCTCTTCTTGCAGAATCATCCC 57.852 45.455 0.00 0.00 33.13 3.85
266 270 2.749839 TATTGCCGGCCAGCACAC 60.750 61.111 26.77 0.00 43.97 3.82
364 368 6.470877 CAGTTTTGTGTTTGTATGTGTGGTAC 59.529 38.462 0.00 0.00 0.00 3.34
390 398 1.199097 CCGTGTTATCTGGTTTGGTGC 59.801 52.381 0.00 0.00 0.00 5.01
589 597 1.202580 ACTGTCACCTTGTGCTGTCTC 60.203 52.381 0.00 0.00 32.98 3.36
710 718 2.625314 GGCTCTGGGCTTAAATCATTCC 59.375 50.000 0.00 0.00 41.46 3.01
724 732 4.785346 ATCATTCCTGATGGCTACTGTT 57.215 40.909 0.00 0.00 40.66 3.16
729 737 1.470098 CCTGATGGCTACTGTTTGTGC 59.530 52.381 0.00 0.00 0.00 4.57
745 757 0.511221 GTGCGTGTGTGTGTGTATCC 59.489 55.000 0.00 0.00 0.00 2.59
776 788 0.687427 AGAAGAGAGAGGGCCTGAGC 60.687 60.000 12.95 0.00 38.76 4.26
828 841 7.072454 AGGAATTACTATTGGTTGCATCCTCTA 59.928 37.037 14.81 5.74 0.00 2.43
936 949 2.289002 GCAGGCAGGTCAATTAGAATCG 59.711 50.000 0.00 0.00 0.00 3.34
943 956 5.294306 GCAGGTCAATTAGAATCGTGATTGA 59.706 40.000 0.00 5.37 36.47 2.57
1017 1030 9.302345 AGTTGTGACATGTCTAATTATTACTCG 57.698 33.333 25.55 0.00 0.00 4.18
1071 1084 0.106149 ACTCACCAGACACGGGAAAC 59.894 55.000 0.00 0.00 0.00 2.78
1425 1438 1.445410 TTCGGCGAGTGTTCCATCG 60.445 57.895 10.46 0.00 41.79 3.84
1461 1474 1.374758 GTCCCTGAGCCTCAACACG 60.375 63.158 0.00 0.00 0.00 4.49
1533 1546 1.272480 ACAACCCAATCTTACCAGGGC 60.272 52.381 0.00 0.00 45.45 5.19
1543 1556 2.039216 TCTTACCAGGGCGATGAAAACA 59.961 45.455 0.00 0.00 0.00 2.83
1590 1603 0.378257 CACGGGCAATCAGGAATTCG 59.622 55.000 0.00 0.00 0.00 3.34
1704 1717 4.624604 GCAGGAAAAATGGATGGCAAAGAT 60.625 41.667 0.00 0.00 0.00 2.40
1743 1756 3.151542 AGTGAGGGGGTATCTTCCAAT 57.848 47.619 0.00 0.00 0.00 3.16
1785 1798 2.099141 CGGAACCTGAGATTTCTGCA 57.901 50.000 0.00 0.00 0.00 4.41
1924 1938 9.162764 GATTTACCTTTGCTTGACTAATCACTA 57.837 33.333 0.00 0.00 33.38 2.74
1957 1971 4.608269 TCTCATGAAGATCCACAGACTCT 58.392 43.478 0.00 0.00 0.00 3.24
1959 1973 5.082251 TCATGAAGATCCACAGACTCTTG 57.918 43.478 0.00 0.00 29.64 3.02
1961 1975 4.527509 TGAAGATCCACAGACTCTTGTC 57.472 45.455 0.00 0.00 43.22 3.18
1962 1976 3.897505 TGAAGATCCACAGACTCTTGTCA 59.102 43.478 0.00 0.00 45.20 3.58
1963 1977 4.344968 TGAAGATCCACAGACTCTTGTCAA 59.655 41.667 0.00 0.00 45.20 3.18
2026 2043 8.767478 TTTTTATACTCCAGTCTAAAGTTCCG 57.233 34.615 0.00 0.00 31.35 4.30
2073 2092 3.314635 AGCTGCAGTTCAGAGTTTCTTTG 59.685 43.478 16.64 0.00 45.72 2.77
2095 2115 3.338818 TTTTCTCAAGAAACGCAGCTG 57.661 42.857 10.11 10.11 43.01 4.24
2252 2273 7.395206 TCATGATCCAAAGTTCATTCAGAATGT 59.605 33.333 20.49 1.33 38.76 2.71
2253 2274 7.528996 TGATCCAAAGTTCATTCAGAATGTT 57.471 32.000 20.49 7.24 38.76 2.71
2254 2275 7.954835 TGATCCAAAGTTCATTCAGAATGTTT 58.045 30.769 20.49 12.24 38.76 2.83
2255 2276 8.423349 TGATCCAAAGTTCATTCAGAATGTTTT 58.577 29.630 20.49 16.04 38.76 2.43
2256 2277 9.264719 GATCCAAAGTTCATTCAGAATGTTTTT 57.735 29.630 20.49 15.77 38.76 1.94
2287 2308 3.641436 GGTGAGGGAGAATGTTTGGTTTT 59.359 43.478 0.00 0.00 0.00 2.43
2342 2363 4.782156 AGAAGTCAGGAGAGATGGTTCAAT 59.218 41.667 0.00 0.00 0.00 2.57
2369 2390 1.280457 AGGTGGGTCTAGGCTTCTTG 58.720 55.000 0.00 0.00 0.00 3.02
2601 2622 4.797349 GGAACGTAAAAGGTACATCTCTCG 59.203 45.833 0.00 0.00 0.00 4.04
2625 2646 4.345257 GGAGCTGTCAGGAAGAATGGTATA 59.655 45.833 1.14 0.00 0.00 1.47
2832 2853 6.398918 ACTTACTACACATCACATCCTCAAC 58.601 40.000 0.00 0.00 0.00 3.18
2852 2873 5.818336 TCAACGAACTATTCTGAACACCAAA 59.182 36.000 0.00 0.00 0.00 3.28
3261 3282 5.365403 TTCACCCGTAAGTTGCTTATTTG 57.635 39.130 0.00 0.00 0.00 2.32
3278 3299 8.387354 TGCTTATTTGTCATATAATTATCGCCG 58.613 33.333 0.00 0.00 0.00 6.46
3665 3689 2.582728 TTGGCTTTGAAAGTGTGCAG 57.417 45.000 6.81 0.00 0.00 4.41
3705 3729 7.211573 ACTTTGCATTCTGTGAAATGAAATCA 58.788 30.769 0.98 0.00 38.64 2.57
3943 3967 1.228737 GGGCCAGGCTTACCAAACA 60.229 57.895 12.43 0.00 39.06 2.83
3949 3973 2.554032 CCAGGCTTACCAAACAAGTGAG 59.446 50.000 0.00 0.00 39.06 3.51
4043 4067 1.509923 GGCTTCATGAACCTGCTGC 59.490 57.895 15.36 11.16 0.00 5.25
4172 4196 1.063951 CGTGTCGTTGACGCTAGGAC 61.064 60.000 8.64 6.99 40.44 3.85
4266 4290 2.698797 AGGATATCTACAACACCACCGG 59.301 50.000 0.00 0.00 0.00 5.28
4345 4369 0.955428 TGGATCAACGGCAGCAGTTC 60.955 55.000 8.09 0.00 0.00 3.01
4399 4423 1.194547 TGAATGAACTGAAACGCTCGC 59.805 47.619 0.00 0.00 0.00 5.03
4414 4438 1.361668 CTCGCCGGTGAACATTGGAG 61.362 60.000 20.06 0.25 0.00 3.86
4451 4559 5.413309 TTTTGTAATTTGTAGGGCCATGG 57.587 39.130 7.63 7.63 0.00 3.66
4468 4576 2.684001 TGGTAATAACGTGCCTGGAG 57.316 50.000 0.00 0.00 0.00 3.86
4509 4617 6.540189 AGCTGTAGTTGCATTTGGTATAGAAG 59.460 38.462 0.00 0.00 0.00 2.85
4510 4618 6.538742 GCTGTAGTTGCATTTGGTATAGAAGA 59.461 38.462 0.00 0.00 0.00 2.87
4553 4661 9.273137 TGAAATGTATTATAAATTTGTGGGGGT 57.727 29.630 5.20 0.00 0.00 4.95
4554 4662 9.541143 GAAATGTATTATAAATTTGTGGGGGTG 57.459 33.333 5.20 0.00 0.00 4.61
4555 4663 7.610580 ATGTATTATAAATTTGTGGGGGTGG 57.389 36.000 0.00 0.00 0.00 4.61
4556 4664 5.900123 TGTATTATAAATTTGTGGGGGTGGG 59.100 40.000 0.00 0.00 0.00 4.61
4626 4734 7.254084 GGGTTATACGTGTAAAAGGTTATGACG 60.254 40.741 6.31 0.00 35.57 4.35
4648 4756 2.271800 GAGACGCACCATCCTGTAAAG 58.728 52.381 0.00 0.00 0.00 1.85
4692 4800 3.239449 TGGACAGTTATCTATCGGGCAT 58.761 45.455 0.00 0.00 0.00 4.40
4693 4801 4.412843 TGGACAGTTATCTATCGGGCATA 58.587 43.478 0.00 0.00 0.00 3.14
4694 4802 5.023452 TGGACAGTTATCTATCGGGCATAT 58.977 41.667 0.00 0.00 0.00 1.78
4696 4804 5.127194 GGACAGTTATCTATCGGGCATATGA 59.873 44.000 6.97 0.00 0.00 2.15
4697 4805 6.214191 ACAGTTATCTATCGGGCATATGAG 57.786 41.667 6.97 0.00 0.00 2.90
4698 4806 5.952347 ACAGTTATCTATCGGGCATATGAGA 59.048 40.000 6.97 2.65 0.00 3.27
4709 4946 5.127194 TCGGGCATATGAGAGGTAATATCAC 59.873 44.000 6.97 0.00 30.38 3.06
4710 4947 5.675538 GGGCATATGAGAGGTAATATCACC 58.324 45.833 6.97 0.00 39.02 4.02
4711 4948 5.352284 GGCATATGAGAGGTAATATCACCG 58.648 45.833 6.97 0.00 43.84 4.94
4732 4969 1.742831 GTGGTGCTTGAACTTGACACA 59.257 47.619 0.00 0.00 32.89 3.72
4748 4986 6.374333 ACTTGACACAATGTTCACTTTAGTGT 59.626 34.615 9.53 0.00 45.76 3.55
4756 4994 6.851222 ATGTTCACTTTAGTGTCTGAACTG 57.149 37.500 9.53 0.00 45.76 3.16
4757 4995 5.972935 TGTTCACTTTAGTGTCTGAACTGA 58.027 37.500 9.53 0.00 45.76 3.41
4759 4997 6.312918 TGTTCACTTTAGTGTCTGAACTGAAC 59.687 38.462 9.53 13.80 45.76 3.18
4760 4998 6.222038 TCACTTTAGTGTCTGAACTGAACT 57.778 37.500 9.53 0.00 45.76 3.01
4761 4999 6.640518 TCACTTTAGTGTCTGAACTGAACTT 58.359 36.000 9.53 0.00 45.76 2.66
4762 5000 6.535150 TCACTTTAGTGTCTGAACTGAACTTG 59.465 38.462 9.53 1.77 45.76 3.16
4802 5068 7.285401 AGTGGTTCTAAAACTTGACATGAACAT 59.715 33.333 0.00 0.00 35.45 2.71
4807 5073 3.648339 AACTTGACATGAACATGGTGC 57.352 42.857 17.25 8.17 42.91 5.01
4849 5115 0.747852 TTACGCTGATATGGCACCGA 59.252 50.000 0.00 0.00 0.00 4.69
4851 5117 0.106708 ACGCTGATATGGCACCGAAT 59.893 50.000 0.00 0.00 0.00 3.34
4854 5120 2.033299 CGCTGATATGGCACCGAATTTT 59.967 45.455 0.00 0.00 0.00 1.82
4862 5128 0.729140 GCACCGAATTTTGGCTGACG 60.729 55.000 2.31 0.00 0.00 4.35
4888 5154 0.606604 GGGTCCACTTCTAGCAACGA 59.393 55.000 0.00 0.00 0.00 3.85
4892 5158 2.599082 GTCCACTTCTAGCAACGAATCG 59.401 50.000 0.00 0.00 0.00 3.34
4894 5160 1.927174 CACTTCTAGCAACGAATCGGG 59.073 52.381 7.80 0.00 0.00 5.14
4909 5175 9.991388 CAACGAATCGGGATTTTAGTTAAATAA 57.009 29.630 7.80 0.00 36.59 1.40
4926 5192 8.373220 AGTTAAATAATACTACCTCCATTCGGG 58.627 37.037 0.00 0.00 38.37 5.14
4927 5193 6.758806 AAATAATACTACCTCCATTCGGGT 57.241 37.500 0.00 0.00 39.40 5.28
4928 5194 6.758806 AATAATACTACCTCCATTCGGGTT 57.241 37.500 0.00 0.00 37.07 4.11
4929 5195 6.758806 ATAATACTACCTCCATTCGGGTTT 57.241 37.500 0.00 0.00 37.07 3.27
4930 5196 7.860649 ATAATACTACCTCCATTCGGGTTTA 57.139 36.000 0.00 0.00 37.07 2.01
4931 5197 6.758806 AATACTACCTCCATTCGGGTTTAT 57.241 37.500 0.00 0.00 37.07 1.40
4932 5198 6.758806 ATACTACCTCCATTCGGGTTTATT 57.241 37.500 0.00 0.00 37.07 1.40
4933 5199 7.860649 ATACTACCTCCATTCGGGTTTATTA 57.139 36.000 0.00 0.00 37.07 0.98
4934 5200 6.170846 ACTACCTCCATTCGGGTTTATTAG 57.829 41.667 0.00 0.00 37.07 1.73
4935 5201 4.432980 ACCTCCATTCGGGTTTATTAGG 57.567 45.455 0.00 0.00 38.11 2.69
4936 5202 3.146847 CCTCCATTCGGGTTTATTAGGC 58.853 50.000 0.00 0.00 38.11 3.93
4937 5203 3.434453 CCTCCATTCGGGTTTATTAGGCA 60.434 47.826 0.00 0.00 38.11 4.75
4938 5204 3.547746 TCCATTCGGGTTTATTAGGCAC 58.452 45.455 0.00 0.00 38.11 5.01
4939 5205 3.201266 TCCATTCGGGTTTATTAGGCACT 59.799 43.478 0.00 0.00 39.66 4.40
4940 5206 3.564225 CCATTCGGGTTTATTAGGCACTC 59.436 47.826 0.00 0.00 41.75 3.51
4941 5207 4.451900 CATTCGGGTTTATTAGGCACTCT 58.548 43.478 0.00 0.00 41.75 3.24
4942 5208 5.454187 CCATTCGGGTTTATTAGGCACTCTA 60.454 44.000 0.00 0.00 41.75 2.43
4943 5209 4.931661 TCGGGTTTATTAGGCACTCTAG 57.068 45.455 0.00 0.00 41.75 2.43
4944 5210 4.284178 TCGGGTTTATTAGGCACTCTAGT 58.716 43.478 0.00 0.00 41.75 2.57
4945 5211 5.448654 TCGGGTTTATTAGGCACTCTAGTA 58.551 41.667 0.00 0.00 41.75 1.82
4946 5212 6.073314 TCGGGTTTATTAGGCACTCTAGTAT 58.927 40.000 0.00 0.00 41.75 2.12
4947 5213 6.552350 TCGGGTTTATTAGGCACTCTAGTATT 59.448 38.462 0.00 0.00 41.75 1.89
4948 5214 7.070322 TCGGGTTTATTAGGCACTCTAGTATTT 59.930 37.037 0.00 0.00 41.75 1.40
4949 5215 7.713942 CGGGTTTATTAGGCACTCTAGTATTTT 59.286 37.037 0.00 0.00 41.75 1.82
4954 5220 9.774413 TTATTAGGCACTCTAGTATTTTAAGCC 57.226 33.333 0.00 0.00 41.75 4.35
4955 5221 5.693769 AGGCACTCTAGTATTTTAAGCCA 57.306 39.130 0.00 0.00 41.88 4.75
4956 5222 5.675538 AGGCACTCTAGTATTTTAAGCCAG 58.324 41.667 0.00 0.00 41.88 4.85
4957 5223 5.425539 AGGCACTCTAGTATTTTAAGCCAGA 59.574 40.000 0.00 0.00 41.88 3.86
4958 5224 5.524281 GGCACTCTAGTATTTTAAGCCAGAC 59.476 44.000 0.00 0.00 39.35 3.51
4959 5225 6.342111 GCACTCTAGTATTTTAAGCCAGACT 58.658 40.000 0.00 0.00 0.00 3.24
4960 5226 6.819146 GCACTCTAGTATTTTAAGCCAGACTT 59.181 38.462 0.00 0.00 42.76 3.01
4961 5227 7.334671 GCACTCTAGTATTTTAAGCCAGACTTT 59.665 37.037 0.00 0.00 39.97 2.66
4962 5228 8.660373 CACTCTAGTATTTTAAGCCAGACTTTG 58.340 37.037 0.00 0.00 39.97 2.77
4963 5229 8.594550 ACTCTAGTATTTTAAGCCAGACTTTGA 58.405 33.333 0.00 0.00 39.97 2.69
4964 5230 9.092876 CTCTAGTATTTTAAGCCAGACTTTGAG 57.907 37.037 0.00 0.00 39.97 3.02
4965 5231 6.502136 AGTATTTTAAGCCAGACTTTGAGC 57.498 37.500 0.00 0.00 39.97 4.26
4966 5232 6.003950 AGTATTTTAAGCCAGACTTTGAGCA 58.996 36.000 0.00 0.00 39.97 4.26
4967 5233 5.990120 ATTTTAAGCCAGACTTTGAGCAT 57.010 34.783 0.00 0.00 39.97 3.79
4968 5234 5.376854 TTTTAAGCCAGACTTTGAGCATC 57.623 39.130 0.00 0.00 39.97 3.91
4969 5235 1.831580 AAGCCAGACTTTGAGCATCC 58.168 50.000 0.00 0.00 33.71 3.51
4970 5236 0.694771 AGCCAGACTTTGAGCATCCA 59.305 50.000 0.00 0.00 0.00 3.41
4971 5237 1.284198 AGCCAGACTTTGAGCATCCAT 59.716 47.619 0.00 0.00 0.00 3.41
4972 5238 2.507058 AGCCAGACTTTGAGCATCCATA 59.493 45.455 0.00 0.00 0.00 2.74
4973 5239 3.137913 AGCCAGACTTTGAGCATCCATAT 59.862 43.478 0.00 0.00 0.00 1.78
4974 5240 3.252701 GCCAGACTTTGAGCATCCATATG 59.747 47.826 0.00 0.00 36.09 1.78
4975 5241 4.711399 CCAGACTTTGAGCATCCATATGA 58.289 43.478 3.65 0.00 34.84 2.15
4976 5242 4.514441 CCAGACTTTGAGCATCCATATGAC 59.486 45.833 3.65 0.00 34.84 3.06
4977 5243 5.366460 CAGACTTTGAGCATCCATATGACT 58.634 41.667 3.65 0.00 34.84 3.41
4978 5244 6.463472 CCAGACTTTGAGCATCCATATGACTA 60.463 42.308 3.65 0.00 34.84 2.59
4979 5245 6.988580 CAGACTTTGAGCATCCATATGACTAA 59.011 38.462 3.65 0.00 34.84 2.24
4980 5246 7.660617 CAGACTTTGAGCATCCATATGACTAAT 59.339 37.037 3.65 0.00 34.84 1.73
4981 5247 8.874156 AGACTTTGAGCATCCATATGACTAATA 58.126 33.333 3.65 0.00 34.84 0.98
4982 5248 9.494271 GACTTTGAGCATCCATATGACTAATAA 57.506 33.333 3.65 0.00 34.84 1.40
4983 5249 9.851686 ACTTTGAGCATCCATATGACTAATAAA 57.148 29.630 3.65 0.00 34.84 1.40
5018 5284 7.748031 TGTGCTACAAAAAGTACATTGTTTG 57.252 32.000 14.31 11.16 40.14 2.93
5019 5285 7.539436 TGTGCTACAAAAAGTACATTGTTTGA 58.461 30.769 14.31 0.62 40.14 2.69
5020 5286 8.194104 TGTGCTACAAAAAGTACATTGTTTGAT 58.806 29.630 14.31 4.90 40.14 2.57
5021 5287 9.030301 GTGCTACAAAAAGTACATTGTTTGATT 57.970 29.630 14.31 0.47 40.14 2.57
5022 5288 9.593134 TGCTACAAAAAGTACATTGTTTGATTT 57.407 25.926 14.31 0.00 40.14 2.17
5023 5289 9.848172 GCTACAAAAAGTACATTGTTTGATTTG 57.152 29.630 14.31 5.62 40.14 2.32
5036 5302 9.801714 CATTGTTTGATTTGTATTTGAAAGAGC 57.198 29.630 0.00 0.00 0.00 4.09
5037 5303 9.768662 ATTGTTTGATTTGTATTTGAAAGAGCT 57.231 25.926 0.00 0.00 0.00 4.09
5038 5304 9.598517 TTGTTTGATTTGTATTTGAAAGAGCTT 57.401 25.926 0.00 0.00 0.00 3.74
5039 5305 9.598517 TGTTTGATTTGTATTTGAAAGAGCTTT 57.401 25.926 0.00 0.00 35.14 3.51
5041 5307 8.816640 TTGATTTGTATTTGAAAGAGCTTTCC 57.183 30.769 17.57 5.25 46.15 3.13
5042 5308 7.083858 TGATTTGTATTTGAAAGAGCTTTCCG 58.916 34.615 17.57 0.00 46.15 4.30
5043 5309 6.627395 TTTGTATTTGAAAGAGCTTTCCGA 57.373 33.333 17.57 8.57 46.15 4.55
5044 5310 5.607119 TGTATTTGAAAGAGCTTTCCGAC 57.393 39.130 17.57 11.40 46.15 4.79
5045 5311 5.060506 TGTATTTGAAAGAGCTTTCCGACA 58.939 37.500 17.57 13.25 46.15 4.35
5046 5312 5.529430 TGTATTTGAAAGAGCTTTCCGACAA 59.471 36.000 17.57 5.82 46.15 3.18
5047 5313 5.712152 ATTTGAAAGAGCTTTCCGACAAT 57.288 34.783 17.57 9.47 46.15 2.71
5048 5314 6.817765 ATTTGAAAGAGCTTTCCGACAATA 57.182 33.333 17.57 0.00 46.15 1.90
5049 5315 6.817765 TTTGAAAGAGCTTTCCGACAATAT 57.182 33.333 17.57 0.00 46.15 1.28
5050 5316 7.915293 TTTGAAAGAGCTTTCCGACAATATA 57.085 32.000 17.57 0.00 46.15 0.86
5051 5317 7.915293 TTGAAAGAGCTTTCCGACAATATAA 57.085 32.000 17.57 2.60 46.15 0.98
5052 5318 8.506168 TTGAAAGAGCTTTCCGACAATATAAT 57.494 30.769 17.57 0.00 46.15 1.28
5053 5319 8.506168 TGAAAGAGCTTTCCGACAATATAATT 57.494 30.769 17.57 0.00 46.15 1.40
5054 5320 8.956426 TGAAAGAGCTTTCCGACAATATAATTT 58.044 29.630 17.57 0.00 46.15 1.82
5055 5321 9.788960 GAAAGAGCTTTCCGACAATATAATTTT 57.211 29.630 11.04 0.00 42.20 1.82
5056 5322 9.573133 AAAGAGCTTTCCGACAATATAATTTTG 57.427 29.630 0.00 0.00 0.00 2.44
5057 5323 8.506168 AGAGCTTTCCGACAATATAATTTTGA 57.494 30.769 0.00 0.00 0.00 2.69
5058 5324 9.125026 AGAGCTTTCCGACAATATAATTTTGAT 57.875 29.630 0.00 0.00 0.00 2.57
5059 5325 9.173939 GAGCTTTCCGACAATATAATTTTGATG 57.826 33.333 0.00 0.00 0.00 3.07
5060 5326 8.902806 AGCTTTCCGACAATATAATTTTGATGA 58.097 29.630 0.00 0.00 0.00 2.92
5061 5327 9.683069 GCTTTCCGACAATATAATTTTGATGAT 57.317 29.630 0.00 0.00 0.00 2.45
5122 5388 8.862325 AAAATTTTAGCCTAAAATGAAAGGGG 57.138 30.769 20.16 0.00 44.98 4.79
5123 5389 7.568128 AATTTTAGCCTAAAATGAAAGGGGT 57.432 32.000 20.16 2.71 44.98 4.95
5124 5390 6.599356 TTTTAGCCTAAAATGAAAGGGGTC 57.401 37.500 5.54 0.00 33.08 4.46
5125 5391 2.723273 AGCCTAAAATGAAAGGGGTCG 58.277 47.619 0.00 0.00 33.17 4.79
5126 5392 2.041216 AGCCTAAAATGAAAGGGGTCGT 59.959 45.455 0.00 0.00 33.17 4.34
5127 5393 3.264964 AGCCTAAAATGAAAGGGGTCGTA 59.735 43.478 0.00 0.00 33.17 3.43
5128 5394 4.011698 GCCTAAAATGAAAGGGGTCGTAA 58.988 43.478 0.00 0.00 33.17 3.18
5129 5395 4.643334 GCCTAAAATGAAAGGGGTCGTAAT 59.357 41.667 0.00 0.00 33.17 1.89
5130 5396 5.824097 GCCTAAAATGAAAGGGGTCGTAATA 59.176 40.000 0.00 0.00 33.17 0.98
5131 5397 6.319405 GCCTAAAATGAAAGGGGTCGTAATAA 59.681 38.462 0.00 0.00 33.17 1.40
5132 5398 7.148035 GCCTAAAATGAAAGGGGTCGTAATAAA 60.148 37.037 0.00 0.00 33.17 1.40
5133 5399 8.909923 CCTAAAATGAAAGGGGTCGTAATAAAT 58.090 33.333 0.00 0.00 0.00 1.40
5134 5400 9.946165 CTAAAATGAAAGGGGTCGTAATAAATC 57.054 33.333 0.00 0.00 0.00 2.17
5135 5401 6.954487 AATGAAAGGGGTCGTAATAAATCC 57.046 37.500 0.00 0.00 0.00 3.01
5136 5402 4.444536 TGAAAGGGGTCGTAATAAATCCG 58.555 43.478 0.00 0.00 0.00 4.18
5137 5403 3.480505 AAGGGGTCGTAATAAATCCGG 57.519 47.619 0.00 0.00 0.00 5.14
5138 5404 2.681422 AGGGGTCGTAATAAATCCGGA 58.319 47.619 6.61 6.61 0.00 5.14
5139 5405 2.366590 AGGGGTCGTAATAAATCCGGAC 59.633 50.000 6.12 0.00 0.00 4.79
5140 5406 2.397549 GGGTCGTAATAAATCCGGACG 58.602 52.381 6.12 4.43 34.90 4.79
5141 5407 2.397549 GGTCGTAATAAATCCGGACGG 58.602 52.381 6.12 3.96 34.38 4.79
5153 5419 3.331478 TCCGGACGGAGAGAGTATATC 57.669 52.381 9.76 0.00 39.76 1.63
5154 5420 2.905085 TCCGGACGGAGAGAGTATATCT 59.095 50.000 9.76 0.00 39.34 1.98
5171 5437 7.635648 AGTATATCTCTATGACTACTGGTCCC 58.364 42.308 0.00 0.00 43.89 4.46
5173 5439 2.508716 TCTCTATGACTACTGGTCCCGT 59.491 50.000 0.00 0.00 43.89 5.28
5183 5449 0.811915 CTGGTCCCGTCTGTCAGTAG 59.188 60.000 0.00 0.00 0.00 2.57
5233 5499 1.080434 GAAGCGTGCGAGAGACCTT 60.080 57.895 0.00 0.00 0.00 3.50
5234 5500 0.667792 GAAGCGTGCGAGAGACCTTT 60.668 55.000 0.00 0.00 0.00 3.11
5235 5501 0.249911 AAGCGTGCGAGAGACCTTTT 60.250 50.000 0.00 0.00 0.00 2.27
5236 5502 0.249911 AGCGTGCGAGAGACCTTTTT 60.250 50.000 0.00 0.00 0.00 1.94
5256 5522 3.519908 TTCTTTTCAGACATTCGTGCG 57.480 42.857 0.00 0.00 0.00 5.34
5257 5523 1.798223 TCTTTTCAGACATTCGTGCGG 59.202 47.619 0.00 0.00 0.00 5.69
5258 5524 0.871722 TTTTCAGACATTCGTGCGGG 59.128 50.000 0.00 0.00 0.00 6.13
5259 5525 0.034198 TTTCAGACATTCGTGCGGGA 59.966 50.000 0.00 0.00 0.00 5.14
5260 5526 0.389817 TTCAGACATTCGTGCGGGAG 60.390 55.000 0.00 0.00 0.00 4.30
5261 5527 1.215382 CAGACATTCGTGCGGGAGA 59.785 57.895 0.00 0.00 0.00 3.71
5262 5528 1.078759 CAGACATTCGTGCGGGAGAC 61.079 60.000 0.00 0.00 0.00 3.36
5274 5540 3.713650 GGAGACCTGTGCTAGCCA 58.286 61.111 13.29 8.94 0.00 4.75
5275 5541 1.219393 GGAGACCTGTGCTAGCCAC 59.781 63.158 13.29 11.02 44.90 5.01
5276 5542 1.261238 GGAGACCTGTGCTAGCCACT 61.261 60.000 13.29 3.63 44.92 4.00
5277 5543 0.174617 GAGACCTGTGCTAGCCACTC 59.825 60.000 13.29 8.94 44.92 3.51
5278 5544 0.252012 AGACCTGTGCTAGCCACTCT 60.252 55.000 13.29 6.94 44.92 3.24
5279 5545 0.610687 GACCTGTGCTAGCCACTCTT 59.389 55.000 13.29 0.00 44.92 2.85
5280 5546 1.002544 GACCTGTGCTAGCCACTCTTT 59.997 52.381 13.29 0.00 44.92 2.52
5281 5547 1.421646 ACCTGTGCTAGCCACTCTTTT 59.578 47.619 13.29 0.00 44.92 2.27
5282 5548 2.158608 ACCTGTGCTAGCCACTCTTTTT 60.159 45.455 13.29 0.00 44.92 1.94
5306 5572 2.185004 TTGAGGGAAACTGTGCTAGC 57.815 50.000 8.10 8.10 0.00 3.42
5307 5573 0.324943 TGAGGGAAACTGTGCTAGCC 59.675 55.000 13.29 4.15 0.00 3.93
5308 5574 0.324943 GAGGGAAACTGTGCTAGCCA 59.675 55.000 13.29 8.94 0.00 4.75
5309 5575 0.036875 AGGGAAACTGTGCTAGCCAC 59.963 55.000 13.29 11.02 44.90 5.01
5310 5576 0.036875 GGGAAACTGTGCTAGCCACT 59.963 55.000 13.29 0.00 44.92 4.00
5311 5577 1.443802 GGAAACTGTGCTAGCCACTC 58.556 55.000 13.29 4.37 44.92 3.51
5312 5578 1.071605 GAAACTGTGCTAGCCACTCG 58.928 55.000 13.29 8.48 44.92 4.18
5313 5579 0.679505 AAACTGTGCTAGCCACTCGA 59.320 50.000 13.29 0.00 44.92 4.04
5314 5580 0.679505 AACTGTGCTAGCCACTCGAA 59.320 50.000 13.29 0.00 44.92 3.71
5315 5581 0.038159 ACTGTGCTAGCCACTCGAAC 60.038 55.000 13.29 1.91 44.92 3.95
5316 5582 0.038251 CTGTGCTAGCCACTCGAACA 60.038 55.000 13.29 6.94 44.92 3.18
5317 5583 0.319555 TGTGCTAGCCACTCGAACAC 60.320 55.000 13.29 0.32 44.92 3.32
5318 5584 0.319555 GTGCTAGCCACTCGAACACA 60.320 55.000 13.29 0.00 41.35 3.72
5319 5585 0.391228 TGCTAGCCACTCGAACACAA 59.609 50.000 13.29 0.00 0.00 3.33
5320 5586 1.202592 TGCTAGCCACTCGAACACAAA 60.203 47.619 13.29 0.00 0.00 2.83
5321 5587 1.194772 GCTAGCCACTCGAACACAAAC 59.805 52.381 2.29 0.00 0.00 2.93
5322 5588 1.798813 CTAGCCACTCGAACACAAACC 59.201 52.381 0.00 0.00 0.00 3.27
5323 5589 0.180406 AGCCACTCGAACACAAACCT 59.820 50.000 0.00 0.00 0.00 3.50
5324 5590 1.021968 GCCACTCGAACACAAACCTT 58.978 50.000 0.00 0.00 0.00 3.50
5325 5591 1.404035 GCCACTCGAACACAAACCTTT 59.596 47.619 0.00 0.00 0.00 3.11
5326 5592 2.614983 GCCACTCGAACACAAACCTTTA 59.385 45.455 0.00 0.00 0.00 1.85
5327 5593 3.252458 GCCACTCGAACACAAACCTTTAT 59.748 43.478 0.00 0.00 0.00 1.40
5328 5594 4.783242 CCACTCGAACACAAACCTTTATG 58.217 43.478 0.00 0.00 0.00 1.90
5329 5595 4.513692 CCACTCGAACACAAACCTTTATGA 59.486 41.667 0.00 0.00 0.00 2.15
5330 5596 5.334105 CCACTCGAACACAAACCTTTATGAG 60.334 44.000 0.00 0.00 0.00 2.90
5331 5597 5.465390 CACTCGAACACAAACCTTTATGAGA 59.535 40.000 0.00 0.00 0.00 3.27
5332 5598 6.147821 CACTCGAACACAAACCTTTATGAGAT 59.852 38.462 0.00 0.00 0.00 2.75
5333 5599 7.330946 CACTCGAACACAAACCTTTATGAGATA 59.669 37.037 0.00 0.00 0.00 1.98
5334 5600 7.876068 ACTCGAACACAAACCTTTATGAGATAA 59.124 33.333 0.00 0.00 0.00 1.75
5335 5601 8.025243 TCGAACACAAACCTTTATGAGATAAC 57.975 34.615 0.00 0.00 0.00 1.89
5336 5602 7.658167 TCGAACACAAACCTTTATGAGATAACA 59.342 33.333 0.00 0.00 0.00 2.41
5337 5603 8.286800 CGAACACAAACCTTTATGAGATAACAA 58.713 33.333 0.00 0.00 0.00 2.83
5338 5604 9.959749 GAACACAAACCTTTATGAGATAACAAA 57.040 29.630 0.00 0.00 0.00 2.83
5339 5605 9.965824 AACACAAACCTTTATGAGATAACAAAG 57.034 29.630 0.00 0.00 0.00 2.77
5344 5610 6.625873 CCTTTATGAGATAACAAAGGCCTC 57.374 41.667 5.23 0.00 40.29 4.70
5345 5611 6.360618 CCTTTATGAGATAACAAAGGCCTCT 58.639 40.000 5.23 0.00 40.29 3.69
5346 5612 6.830838 CCTTTATGAGATAACAAAGGCCTCTT 59.169 38.462 5.23 0.00 40.29 2.85
5347 5613 7.993183 CCTTTATGAGATAACAAAGGCCTCTTA 59.007 37.037 5.23 2.54 40.29 2.10
5348 5614 9.566432 CTTTATGAGATAACAAAGGCCTCTTAT 57.434 33.333 5.23 7.87 32.01 1.73
5349 5615 9.920946 TTTATGAGATAACAAAGGCCTCTTATT 57.079 29.630 5.23 0.78 32.01 1.40
5350 5616 9.561069 TTATGAGATAACAAAGGCCTCTTATTC 57.439 33.333 5.23 8.70 32.01 1.75
5351 5617 7.200434 TGAGATAACAAAGGCCTCTTATTCT 57.800 36.000 5.23 4.63 32.01 2.40
5352 5618 7.633789 TGAGATAACAAAGGCCTCTTATTCTT 58.366 34.615 5.23 0.00 32.01 2.52
5353 5619 8.768397 TGAGATAACAAAGGCCTCTTATTCTTA 58.232 33.333 5.23 0.00 32.01 2.10
5354 5620 9.614792 GAGATAACAAAGGCCTCTTATTCTTAA 57.385 33.333 5.23 0.00 32.01 1.85
5357 5623 9.700831 ATAACAAAGGCCTCTTATTCTTAATGT 57.299 29.630 5.23 0.00 32.01 2.71
5359 5625 8.507524 ACAAAGGCCTCTTATTCTTAATGTAC 57.492 34.615 5.23 0.00 32.01 2.90
5360 5626 8.329502 ACAAAGGCCTCTTATTCTTAATGTACT 58.670 33.333 5.23 0.00 32.01 2.73
5361 5627 8.831550 CAAAGGCCTCTTATTCTTAATGTACTC 58.168 37.037 5.23 0.00 32.01 2.59
5362 5628 7.922699 AGGCCTCTTATTCTTAATGTACTCT 57.077 36.000 0.00 0.00 0.00 3.24
5363 5629 9.435570 AAGGCCTCTTATTCTTAATGTACTCTA 57.564 33.333 5.23 0.00 0.00 2.43
5364 5630 9.435570 AGGCCTCTTATTCTTAATGTACTCTAA 57.564 33.333 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.148967 GCAGCTCGGATTTTTAAGTAGTTTTTG 60.149 37.037 0.00 0.00 0.00 2.44
39 40 6.861572 GCAGCTCGGATTTTTAAGTAGTTTTT 59.138 34.615 0.00 0.00 0.00 1.94
44 45 5.545658 TTGCAGCTCGGATTTTTAAGTAG 57.454 39.130 0.00 0.00 0.00 2.57
50 51 3.123050 GTTGTTTGCAGCTCGGATTTTT 58.877 40.909 0.00 0.00 0.00 1.94
71 72 6.052360 GCTAGATAGAAACTCCTTTTCCCAG 58.948 44.000 0.00 0.00 44.32 4.45
73 74 5.104485 TGGCTAGATAGAAACTCCTTTTCCC 60.104 44.000 0.00 0.00 44.32 3.97
75 76 5.525745 GCTGGCTAGATAGAAACTCCTTTTC 59.474 44.000 0.00 0.00 43.67 2.29
81 84 4.283212 AGATGGCTGGCTAGATAGAAACTC 59.717 45.833 0.00 0.00 0.00 3.01
130 133 2.414481 CGATGATTCGGGATGATTCTGC 59.586 50.000 0.00 0.00 41.74 4.26
142 145 2.321060 GCGTGCACCGATGATTCG 59.679 61.111 12.15 0.00 45.08 3.34
223 227 4.769688 TGTCTGATCAATTATTGACGGCT 58.230 39.130 10.02 0.00 43.48 5.52
227 231 9.941664 CAATACCTTGTCTGATCAATTATTGAC 57.058 33.333 10.02 5.37 43.48 3.18
266 270 6.470235 GCCTGTTCTTGAATGAAATACGATTG 59.530 38.462 0.00 0.00 0.00 2.67
364 368 0.537188 ACCAGATAACACGGCCTCTG 59.463 55.000 9.86 9.86 35.88 3.35
390 398 0.681175 CCAAAGCCACCCAAAGGAAG 59.319 55.000 0.00 0.00 36.73 3.46
485 493 1.733526 GTTCTTGGCCGTTTGCACT 59.266 52.632 0.00 0.00 43.89 4.40
538 546 2.147958 TGTTTGCAGGCTAAAGGTACG 58.852 47.619 0.00 0.00 0.00 3.67
583 591 2.376808 ATGCTCAGGAAACGAGACAG 57.623 50.000 0.00 0.00 34.36 3.51
589 597 1.197721 GACACCAATGCTCAGGAAACG 59.802 52.381 0.00 0.00 0.00 3.60
707 715 3.411446 CACAAACAGTAGCCATCAGGAA 58.589 45.455 0.00 0.00 36.89 3.36
710 718 1.129251 CGCACAAACAGTAGCCATCAG 59.871 52.381 0.00 0.00 0.00 2.90
724 732 1.595328 GATACACACACACACGCACAA 59.405 47.619 0.00 0.00 0.00 3.33
729 737 1.792367 CACAGGATACACACACACACG 59.208 52.381 0.00 0.00 41.41 4.49
796 809 9.646522 ATGCAACCAATAGTAATTCCTTATCTT 57.353 29.630 0.00 0.00 0.00 2.40
936 949 5.504665 CCACTTGTGAAGTCAACTCAATCAC 60.505 44.000 1.89 6.54 40.46 3.06
943 956 2.418368 TGCCACTTGTGAAGTCAACT 57.582 45.000 1.89 0.00 40.46 3.16
1017 1030 2.434359 CTTTCGTCACCCGGGCTC 60.434 66.667 24.08 10.44 37.11 4.70
1071 1084 3.566261 GGCACGGGATATGATGCG 58.434 61.111 0.00 0.00 39.02 4.73
1103 1116 5.963176 TGCATTGTTTGAATAGAGCAAGA 57.037 34.783 0.00 0.00 0.00 3.02
1167 1180 2.099263 CAGCTCCATGAAATTCTGCTGG 59.901 50.000 0.00 9.21 41.59 4.85
1266 1279 4.033009 TCCTCATATCTTTGACAGGAGCA 58.967 43.478 0.00 0.00 0.00 4.26
1331 1344 1.134280 GGATGAGATCACCACCACCAG 60.134 57.143 0.00 0.00 0.00 4.00
1461 1474 2.283145 ATGAAGGTGCCAGGATATGC 57.717 50.000 0.00 0.00 0.00 3.14
1533 1546 7.911727 TGCATATTCTTCATTCTGTTTTCATCG 59.088 33.333 0.00 0.00 0.00 3.84
1543 1556 5.282055 TCCGACTGCATATTCTTCATTCT 57.718 39.130 0.00 0.00 0.00 2.40
1590 1603 5.178797 TCTTGTGCTGCCTTTAGATACTTC 58.821 41.667 0.00 0.00 0.00 3.01
1629 1642 6.426937 GCTTTATACTCTTCCAAACACTGACA 59.573 38.462 0.00 0.00 0.00 3.58
1704 1717 1.879380 CTTTTCAACACCTCATCGGCA 59.121 47.619 0.00 0.00 35.61 5.69
1743 1756 0.114364 TGGCAGTAGACTCCTGTGGA 59.886 55.000 0.00 0.00 32.41 4.02
1785 1798 1.696336 TGGAGCTCTTGTTTCTCAGCT 59.304 47.619 14.64 0.00 35.13 4.24
1924 1938 7.877097 GTGGATCTTCATGAGAATTACAGCTAT 59.123 37.037 0.00 0.00 38.06 2.97
2005 2022 7.568349 TCTACGGAACTTTAGACTGGAGTATA 58.432 38.462 0.00 0.00 0.00 1.47
2006 2023 6.421485 TCTACGGAACTTTAGACTGGAGTAT 58.579 40.000 0.00 0.00 0.00 2.12
2053 2072 4.889832 ACAAAGAAACTCTGAACTGCAG 57.110 40.909 13.48 13.48 46.31 4.41
2073 2092 3.483558 CAGCTGCGTTTCTTGAGAAAAAC 59.516 43.478 0.00 4.40 44.58 2.43
2095 2115 7.995289 TGACTTCTGAGATATGAGAAACTCTC 58.005 38.462 0.00 0.00 43.65 3.20
2221 2242 2.304470 TGAACTTTGGATCATGACCCGA 59.696 45.455 0.37 0.00 0.00 5.14
2260 2281 4.100808 CCAAACATTCTCCCTCACCAAAAA 59.899 41.667 0.00 0.00 0.00 1.94
2261 2282 3.640967 CCAAACATTCTCCCTCACCAAAA 59.359 43.478 0.00 0.00 0.00 2.44
2262 2283 3.230134 CCAAACATTCTCCCTCACCAAA 58.770 45.455 0.00 0.00 0.00 3.28
2263 2284 2.176798 ACCAAACATTCTCCCTCACCAA 59.823 45.455 0.00 0.00 0.00 3.67
2264 2285 1.780309 ACCAAACATTCTCCCTCACCA 59.220 47.619 0.00 0.00 0.00 4.17
2265 2286 2.586648 ACCAAACATTCTCCCTCACC 57.413 50.000 0.00 0.00 0.00 4.02
2266 2287 4.937201 AAAACCAAACATTCTCCCTCAC 57.063 40.909 0.00 0.00 0.00 3.51
2267 2288 6.609616 AGTTAAAAACCAAACATTCTCCCTCA 59.390 34.615 0.00 0.00 0.00 3.86
2268 2289 7.050970 AGTTAAAAACCAAACATTCTCCCTC 57.949 36.000 0.00 0.00 0.00 4.30
2269 2290 8.002459 TCTAGTTAAAAACCAAACATTCTCCCT 58.998 33.333 0.00 0.00 0.00 4.20
2270 2291 8.173542 TCTAGTTAAAAACCAAACATTCTCCC 57.826 34.615 0.00 0.00 0.00 4.30
2287 2308 7.582719 AGCCCCATGTATGAATTTCTAGTTAA 58.417 34.615 0.00 0.00 0.00 2.01
2342 2363 2.829023 CCTAGACCCACCTAGAAACCA 58.171 52.381 0.00 0.00 38.68 3.67
2369 2390 6.103330 GGTATATAGGCAGCTAAGCTTTCTC 58.897 44.000 3.20 0.00 36.40 2.87
2521 2542 4.096382 TGACTTTCTTCTGAACTTTGTGGC 59.904 41.667 0.00 0.00 31.02 5.01
2601 2622 1.407989 CCATTCTTCCTGACAGCTCCC 60.408 57.143 0.00 0.00 0.00 4.30
2726 2747 4.567747 CCCTGTTTAGCCTGTGTTAAGGAT 60.568 45.833 0.00 0.00 40.02 3.24
2832 2853 5.924475 AGTTTGGTGTTCAGAATAGTTCG 57.076 39.130 0.00 0.00 34.02 3.95
3261 3282 4.494199 GGCAAGCGGCGATAATTATATGAC 60.494 45.833 12.98 0.00 46.16 3.06
3278 3299 0.249868 AAAAGCGAAAAGGGGCAAGC 60.250 50.000 0.00 0.00 0.00 4.01
3430 3451 4.395959 AACAAGGCATGCCAATCATTAG 57.604 40.909 37.18 18.68 38.92 1.73
3431 3452 4.955450 ACTAACAAGGCATGCCAATCATTA 59.045 37.500 37.18 23.71 38.92 1.90
3544 3565 6.073167 TCGACATACTACATGCTAGTAAGAGC 60.073 42.308 17.11 11.07 43.16 4.09
3548 3569 8.509690 GGTTATCGACATACTACATGCTAGTAA 58.490 37.037 14.85 4.08 34.18 2.24
3665 3689 4.067896 TGCAAAGTCTTCCAGAAGTCATC 58.932 43.478 7.26 0.00 39.38 2.92
3943 3967 3.068590 CCATGTTGGCTTTGAACTCACTT 59.931 43.478 0.00 0.00 0.00 3.16
3949 3973 3.367703 CCATCTCCATGTTGGCTTTGAAC 60.368 47.826 0.00 0.00 37.47 3.18
4005 4029 3.479269 CGTCGGAGTTTGCCTCGC 61.479 66.667 0.00 0.00 41.46 5.03
4043 4067 0.321653 CCCGGTCTTTGGTCCTTCAG 60.322 60.000 0.00 0.00 0.00 3.02
4141 4165 1.151777 ACGACACGTTGCTGTTCTGG 61.152 55.000 0.00 0.00 36.35 3.86
4153 4177 1.063951 GTCCTAGCGTCAACGACACG 61.064 60.000 6.75 0.00 43.02 4.49
4237 4261 4.902448 GTGTTGTAGATATCCTCTTCCCCT 59.098 45.833 0.00 0.00 35.28 4.79
4313 4337 1.519455 GATCCAGCTGGTTCGTCGG 60.519 63.158 31.58 4.18 36.34 4.79
4399 4423 0.392998 CTCCCTCCAATGTTCACCGG 60.393 60.000 0.00 0.00 0.00 5.28
4451 4559 2.608090 GCTTCTCCAGGCACGTTATTAC 59.392 50.000 0.00 0.00 0.00 1.89
4468 4576 4.708726 ACAGCTACAATTTCCATGCTTC 57.291 40.909 0.00 0.00 0.00 3.86
4509 4617 3.176924 TCATGCTATACCCCCTCTCTC 57.823 52.381 0.00 0.00 0.00 3.20
4510 4618 3.637821 TTCATGCTATACCCCCTCTCT 57.362 47.619 0.00 0.00 0.00 3.10
4556 4664 0.925221 TATTTACCCCACCCCCACCC 60.925 60.000 0.00 0.00 0.00 4.61
4596 4704 6.990341 ACCTTTTACACGTATAACCCATTC 57.010 37.500 0.00 0.00 0.00 2.67
4626 4734 1.327690 TACAGGATGGTGCGTCTCCC 61.328 60.000 0.00 0.00 43.62 4.30
4634 4742 4.630069 CCGTAACTTCTTTACAGGATGGTG 59.370 45.833 0.00 0.00 43.62 4.17
4663 4771 7.039644 CCCGATAGATAACTGTCCAGAAGTATT 60.040 40.741 0.40 0.00 39.76 1.89
4674 4782 5.952347 TCTCATATGCCCGATAGATAACTGT 59.048 40.000 0.00 0.00 39.76 3.55
4692 4800 4.770531 CCACCGGTGATATTACCTCTCATA 59.229 45.833 36.07 0.00 38.62 2.15
4693 4801 3.578716 CCACCGGTGATATTACCTCTCAT 59.421 47.826 36.07 0.00 38.62 2.90
4694 4802 2.963101 CCACCGGTGATATTACCTCTCA 59.037 50.000 36.07 0.00 38.62 3.27
4696 4804 3.042059 ACCACCGGTGATATTACCTCT 57.958 47.619 36.07 1.67 38.62 3.69
4709 4946 0.817634 TCAAGTTCAAGCACCACCGG 60.818 55.000 0.00 0.00 0.00 5.28
4710 4947 0.307760 GTCAAGTTCAAGCACCACCG 59.692 55.000 0.00 0.00 0.00 4.94
4711 4948 1.065551 GTGTCAAGTTCAAGCACCACC 59.934 52.381 0.00 0.00 0.00 4.61
4771 5037 7.639113 TGTCAAGTTTTAGAACCACTTTGAT 57.361 32.000 3.05 0.00 36.39 2.57
4777 5043 6.791303 TGTTCATGTCAAGTTTTAGAACCAC 58.209 36.000 0.00 0.00 36.39 4.16
4779 5045 6.863126 CCATGTTCATGTCAAGTTTTAGAACC 59.137 38.462 11.13 0.00 36.39 3.62
4788 5054 2.867624 AGCACCATGTTCATGTCAAGT 58.132 42.857 11.13 0.57 0.00 3.16
4802 5068 4.016444 GTCTTCAAATGGGATTAGCACCA 58.984 43.478 0.00 0.00 41.76 4.17
4807 5073 9.931210 GTAATTTACGTCTTCAAATGGGATTAG 57.069 33.333 0.00 0.00 0.00 1.73
4849 5115 0.968405 ATGCCACGTCAGCCAAAATT 59.032 45.000 4.72 0.00 0.00 1.82
4851 5117 1.659233 CATGCCACGTCAGCCAAAA 59.341 52.632 4.72 0.00 0.00 2.44
4854 5120 4.720902 CCCATGCCACGTCAGCCA 62.721 66.667 4.72 0.00 0.00 4.75
4909 5175 6.758806 AATAAACCCGAATGGAGGTAGTAT 57.241 37.500 0.00 0.00 37.49 2.12
4916 5182 3.564225 GTGCCTAATAAACCCGAATGGAG 59.436 47.826 0.00 0.00 37.49 3.86
4917 5183 3.201266 AGTGCCTAATAAACCCGAATGGA 59.799 43.478 0.00 0.00 37.49 3.41
4918 5184 3.551846 AGTGCCTAATAAACCCGAATGG 58.448 45.455 0.00 0.00 41.37 3.16
4919 5185 4.451900 AGAGTGCCTAATAAACCCGAATG 58.548 43.478 0.00 0.00 0.00 2.67
4920 5186 4.772886 AGAGTGCCTAATAAACCCGAAT 57.227 40.909 0.00 0.00 0.00 3.34
4921 5187 4.713321 ACTAGAGTGCCTAATAAACCCGAA 59.287 41.667 0.00 0.00 0.00 4.30
4922 5188 4.284178 ACTAGAGTGCCTAATAAACCCGA 58.716 43.478 0.00 0.00 0.00 5.14
4923 5189 4.667519 ACTAGAGTGCCTAATAAACCCG 57.332 45.455 0.00 0.00 0.00 5.28
4924 5190 8.975663 AAAATACTAGAGTGCCTAATAAACCC 57.024 34.615 0.00 0.00 0.00 4.11
4928 5194 9.774413 GGCTTAAAATACTAGAGTGCCTAATAA 57.226 33.333 0.00 0.00 35.44 1.40
4929 5195 8.930527 TGGCTTAAAATACTAGAGTGCCTAATA 58.069 33.333 0.00 0.00 38.70 0.98
4930 5196 7.802117 TGGCTTAAAATACTAGAGTGCCTAAT 58.198 34.615 0.00 0.00 38.70 1.73
4931 5197 7.125204 TCTGGCTTAAAATACTAGAGTGCCTAA 59.875 37.037 0.00 0.00 38.70 2.69
4932 5198 6.610020 TCTGGCTTAAAATACTAGAGTGCCTA 59.390 38.462 0.00 0.00 38.70 3.93
4933 5199 5.425539 TCTGGCTTAAAATACTAGAGTGCCT 59.574 40.000 0.00 0.00 38.70 4.75
4934 5200 5.524281 GTCTGGCTTAAAATACTAGAGTGCC 59.476 44.000 0.00 0.00 38.42 5.01
4935 5201 6.342111 AGTCTGGCTTAAAATACTAGAGTGC 58.658 40.000 0.00 0.00 0.00 4.40
4936 5202 8.660373 CAAAGTCTGGCTTAAAATACTAGAGTG 58.340 37.037 0.00 0.00 36.17 3.51
4937 5203 8.594550 TCAAAGTCTGGCTTAAAATACTAGAGT 58.405 33.333 0.00 0.00 36.17 3.24
4938 5204 9.092876 CTCAAAGTCTGGCTTAAAATACTAGAG 57.907 37.037 0.00 0.00 36.17 2.43
4939 5205 7.549488 GCTCAAAGTCTGGCTTAAAATACTAGA 59.451 37.037 0.00 0.00 36.17 2.43
4940 5206 7.334421 TGCTCAAAGTCTGGCTTAAAATACTAG 59.666 37.037 0.00 0.00 36.17 2.57
4941 5207 7.165485 TGCTCAAAGTCTGGCTTAAAATACTA 58.835 34.615 0.00 0.00 36.17 1.82
4942 5208 6.003950 TGCTCAAAGTCTGGCTTAAAATACT 58.996 36.000 0.00 0.00 36.17 2.12
4943 5209 6.254281 TGCTCAAAGTCTGGCTTAAAATAC 57.746 37.500 0.00 0.00 36.17 1.89
4944 5210 6.095440 GGATGCTCAAAGTCTGGCTTAAAATA 59.905 38.462 0.00 0.00 36.17 1.40
4945 5211 5.105595 GGATGCTCAAAGTCTGGCTTAAAAT 60.106 40.000 0.00 0.00 36.17 1.82
4946 5212 4.218417 GGATGCTCAAAGTCTGGCTTAAAA 59.782 41.667 0.00 0.00 36.17 1.52
4947 5213 3.758554 GGATGCTCAAAGTCTGGCTTAAA 59.241 43.478 0.00 0.00 36.17 1.52
4948 5214 3.244875 TGGATGCTCAAAGTCTGGCTTAA 60.245 43.478 0.00 0.00 36.17 1.85
4949 5215 2.305635 TGGATGCTCAAAGTCTGGCTTA 59.694 45.455 0.00 0.00 36.17 3.09
4950 5216 1.074405 TGGATGCTCAAAGTCTGGCTT 59.926 47.619 0.00 0.00 39.52 4.35
4951 5217 0.694771 TGGATGCTCAAAGTCTGGCT 59.305 50.000 0.00 0.00 0.00 4.75
4952 5218 1.760192 ATGGATGCTCAAAGTCTGGC 58.240 50.000 0.00 0.00 0.00 4.85
4953 5219 4.514441 GTCATATGGATGCTCAAAGTCTGG 59.486 45.833 2.13 0.00 32.62 3.86
4954 5220 5.366460 AGTCATATGGATGCTCAAAGTCTG 58.634 41.667 2.13 0.00 32.62 3.51
4955 5221 5.627182 AGTCATATGGATGCTCAAAGTCT 57.373 39.130 2.13 0.00 32.62 3.24
4956 5222 7.976135 ATTAGTCATATGGATGCTCAAAGTC 57.024 36.000 2.13 0.00 32.62 3.01
4957 5223 9.851686 TTTATTAGTCATATGGATGCTCAAAGT 57.148 29.630 2.13 0.00 32.62 2.66
4992 5258 9.457110 CAAACAATGTACTTTTTGTAGCACATA 57.543 29.630 8.97 0.00 35.09 2.29
4993 5259 8.194104 TCAAACAATGTACTTTTTGTAGCACAT 58.806 29.630 8.97 0.00 35.09 3.21
4994 5260 7.539436 TCAAACAATGTACTTTTTGTAGCACA 58.461 30.769 8.97 0.00 35.09 4.57
4995 5261 7.979115 TCAAACAATGTACTTTTTGTAGCAC 57.021 32.000 8.97 0.00 35.09 4.40
4996 5262 9.593134 AAATCAAACAATGTACTTTTTGTAGCA 57.407 25.926 8.97 0.00 35.09 3.49
4997 5263 9.848172 CAAATCAAACAATGTACTTTTTGTAGC 57.152 29.630 8.97 0.00 35.09 3.58
5010 5276 9.801714 GCTCTTTCAAATACAAATCAAACAATG 57.198 29.630 0.00 0.00 0.00 2.82
5011 5277 9.768662 AGCTCTTTCAAATACAAATCAAACAAT 57.231 25.926 0.00 0.00 0.00 2.71
5012 5278 9.598517 AAGCTCTTTCAAATACAAATCAAACAA 57.401 25.926 0.00 0.00 0.00 2.83
5013 5279 9.598517 AAAGCTCTTTCAAATACAAATCAAACA 57.401 25.926 0.00 0.00 0.00 2.83
5029 5295 9.788960 AAAATTATATTGTCGGAAAGCTCTTTC 57.211 29.630 12.61 12.61 46.03 2.62
5030 5296 9.573133 CAAAATTATATTGTCGGAAAGCTCTTT 57.427 29.630 0.00 0.00 35.14 2.52
5031 5297 8.956426 TCAAAATTATATTGTCGGAAAGCTCTT 58.044 29.630 0.00 0.00 0.00 2.85
5032 5298 8.506168 TCAAAATTATATTGTCGGAAAGCTCT 57.494 30.769 0.00 0.00 0.00 4.09
5033 5299 9.173939 CATCAAAATTATATTGTCGGAAAGCTC 57.826 33.333 0.00 0.00 0.00 4.09
5034 5300 8.902806 TCATCAAAATTATATTGTCGGAAAGCT 58.097 29.630 0.00 0.00 0.00 3.74
5035 5301 9.683069 ATCATCAAAATTATATTGTCGGAAAGC 57.317 29.630 0.00 0.00 0.00 3.51
5096 5362 9.952030 CCCCTTTCATTTTAGGCTAAAATTTTA 57.048 29.630 32.33 21.58 43.71 1.52
5097 5363 8.444783 ACCCCTTTCATTTTAGGCTAAAATTTT 58.555 29.630 32.33 17.40 43.71 1.82
5098 5364 7.984475 ACCCCTTTCATTTTAGGCTAAAATTT 58.016 30.769 32.33 18.01 43.71 1.82
5099 5365 7.568128 ACCCCTTTCATTTTAGGCTAAAATT 57.432 32.000 32.33 19.81 43.71 1.82
5100 5366 6.127451 CGACCCCTTTCATTTTAGGCTAAAAT 60.127 38.462 30.29 30.29 46.23 1.82
5101 5367 5.184287 CGACCCCTTTCATTTTAGGCTAAAA 59.816 40.000 28.87 28.87 41.38 1.52
5102 5368 4.703093 CGACCCCTTTCATTTTAGGCTAAA 59.297 41.667 15.49 15.49 0.00 1.85
5103 5369 4.263594 ACGACCCCTTTCATTTTAGGCTAA 60.264 41.667 2.04 2.04 0.00 3.09
5104 5370 3.264964 ACGACCCCTTTCATTTTAGGCTA 59.735 43.478 0.00 0.00 0.00 3.93
5105 5371 2.041216 ACGACCCCTTTCATTTTAGGCT 59.959 45.455 0.00 0.00 0.00 4.58
5106 5372 2.443416 ACGACCCCTTTCATTTTAGGC 58.557 47.619 0.00 0.00 0.00 3.93
5107 5373 7.868906 TTATTACGACCCCTTTCATTTTAGG 57.131 36.000 0.00 0.00 0.00 2.69
5108 5374 9.946165 GATTTATTACGACCCCTTTCATTTTAG 57.054 33.333 0.00 0.00 0.00 1.85
5109 5375 8.905850 GGATTTATTACGACCCCTTTCATTTTA 58.094 33.333 0.00 0.00 0.00 1.52
5110 5376 7.415877 CGGATTTATTACGACCCCTTTCATTTT 60.416 37.037 0.00 0.00 0.00 1.82
5111 5377 6.038936 CGGATTTATTACGACCCCTTTCATTT 59.961 38.462 0.00 0.00 0.00 2.32
5112 5378 5.529800 CGGATTTATTACGACCCCTTTCATT 59.470 40.000 0.00 0.00 0.00 2.57
5113 5379 5.061179 CGGATTTATTACGACCCCTTTCAT 58.939 41.667 0.00 0.00 0.00 2.57
5114 5380 4.444536 CGGATTTATTACGACCCCTTTCA 58.555 43.478 0.00 0.00 0.00 2.69
5115 5381 3.811497 CCGGATTTATTACGACCCCTTTC 59.189 47.826 0.00 0.00 0.00 2.62
5116 5382 3.455543 TCCGGATTTATTACGACCCCTTT 59.544 43.478 0.00 0.00 0.00 3.11
5117 5383 3.040477 TCCGGATTTATTACGACCCCTT 58.960 45.455 0.00 0.00 0.00 3.95
5118 5384 2.366590 GTCCGGATTTATTACGACCCCT 59.633 50.000 7.81 0.00 0.00 4.79
5119 5385 2.759191 GTCCGGATTTATTACGACCCC 58.241 52.381 7.81 0.00 0.00 4.95
5120 5386 2.397549 CGTCCGGATTTATTACGACCC 58.602 52.381 7.81 0.00 35.66 4.46
5121 5387 2.034558 TCCGTCCGGATTTATTACGACC 59.965 50.000 7.81 0.00 39.76 4.79
5122 5388 3.003689 TCTCCGTCCGGATTTATTACGAC 59.996 47.826 7.81 0.00 44.24 4.34
5123 5389 3.213506 TCTCCGTCCGGATTTATTACGA 58.786 45.455 7.81 0.00 44.24 3.43
5124 5390 3.251729 TCTCTCCGTCCGGATTTATTACG 59.748 47.826 7.81 4.79 44.24 3.18
5125 5391 4.277921 ACTCTCTCCGTCCGGATTTATTAC 59.722 45.833 7.81 0.00 44.24 1.89
5126 5392 4.467769 ACTCTCTCCGTCCGGATTTATTA 58.532 43.478 7.81 0.00 44.24 0.98
5127 5393 3.297736 ACTCTCTCCGTCCGGATTTATT 58.702 45.455 7.81 0.00 44.24 1.40
5128 5394 2.946785 ACTCTCTCCGTCCGGATTTAT 58.053 47.619 7.81 0.00 44.24 1.40
5129 5395 2.431954 ACTCTCTCCGTCCGGATTTA 57.568 50.000 7.81 0.00 44.24 1.40
5130 5396 2.431954 TACTCTCTCCGTCCGGATTT 57.568 50.000 7.81 0.00 44.24 2.17
5131 5397 2.660670 ATACTCTCTCCGTCCGGATT 57.339 50.000 7.81 0.00 44.24 3.01
5132 5398 3.520317 AGATATACTCTCTCCGTCCGGAT 59.480 47.826 7.81 0.00 44.24 4.18
5133 5399 2.905085 AGATATACTCTCTCCGTCCGGA 59.095 50.000 0.00 0.00 42.90 5.14
5134 5400 3.264104 GAGATATACTCTCTCCGTCCGG 58.736 54.545 0.00 0.00 45.97 5.14
5159 5425 0.810016 GACAGACGGGACCAGTAGTC 59.190 60.000 11.98 11.98 45.51 2.59
5160 5426 0.111832 TGACAGACGGGACCAGTAGT 59.888 55.000 0.00 0.00 0.00 2.73
5161 5427 0.811915 CTGACAGACGGGACCAGTAG 59.188 60.000 0.00 0.00 0.00 2.57
5162 5428 0.111832 ACTGACAGACGGGACCAGTA 59.888 55.000 10.08 0.00 36.44 2.74
5163 5429 0.111832 TACTGACAGACGGGACCAGT 59.888 55.000 10.08 0.00 40.66 4.00
5164 5430 0.811915 CTACTGACAGACGGGACCAG 59.188 60.000 10.08 0.00 0.00 4.00
5165 5431 0.402887 TCTACTGACAGACGGGACCA 59.597 55.000 10.08 0.00 0.00 4.02
5171 5437 4.768130 TTTCCTTCTCTACTGACAGACG 57.232 45.455 10.08 0.00 0.00 4.18
5173 5439 7.303182 TCAATTTTCCTTCTCTACTGACAGA 57.697 36.000 10.08 0.00 0.00 3.41
5233 5499 4.732923 CGCACGAATGTCTGAAAAGAAAAA 59.267 37.500 0.00 0.00 0.00 1.94
5234 5500 4.278858 CGCACGAATGTCTGAAAAGAAAA 58.721 39.130 0.00 0.00 0.00 2.29
5235 5501 3.303725 CCGCACGAATGTCTGAAAAGAAA 60.304 43.478 0.00 0.00 0.00 2.52
5236 5502 2.223144 CCGCACGAATGTCTGAAAAGAA 59.777 45.455 0.00 0.00 0.00 2.52
5237 5503 1.798223 CCGCACGAATGTCTGAAAAGA 59.202 47.619 0.00 0.00 0.00 2.52
5238 5504 1.135972 CCCGCACGAATGTCTGAAAAG 60.136 52.381 0.00 0.00 0.00 2.27
5239 5505 0.871722 CCCGCACGAATGTCTGAAAA 59.128 50.000 0.00 0.00 0.00 2.29
5240 5506 0.034198 TCCCGCACGAATGTCTGAAA 59.966 50.000 0.00 0.00 0.00 2.69
5241 5507 0.389817 CTCCCGCACGAATGTCTGAA 60.390 55.000 0.00 0.00 0.00 3.02
5242 5508 1.215382 CTCCCGCACGAATGTCTGA 59.785 57.895 0.00 0.00 0.00 3.27
5243 5509 1.078759 GTCTCCCGCACGAATGTCTG 61.079 60.000 0.00 0.00 0.00 3.51
5244 5510 1.215647 GTCTCCCGCACGAATGTCT 59.784 57.895 0.00 0.00 0.00 3.41
5245 5511 1.810030 GGTCTCCCGCACGAATGTC 60.810 63.158 0.00 0.00 0.00 3.06
5246 5512 2.264794 GGTCTCCCGCACGAATGT 59.735 61.111 0.00 0.00 0.00 2.71
5247 5513 1.811266 CAGGTCTCCCGCACGAATG 60.811 63.158 0.00 0.00 35.12 2.67
5248 5514 2.283529 ACAGGTCTCCCGCACGAAT 61.284 57.895 0.00 0.00 35.12 3.34
5249 5515 2.915659 ACAGGTCTCCCGCACGAA 60.916 61.111 0.00 0.00 35.12 3.85
5250 5516 3.680786 CACAGGTCTCCCGCACGA 61.681 66.667 0.00 0.00 35.12 4.35
5252 5518 2.564553 CTAGCACAGGTCTCCCGCAC 62.565 65.000 0.00 0.00 35.12 5.34
5253 5519 2.283604 TAGCACAGGTCTCCCGCA 60.284 61.111 0.00 0.00 35.12 5.69
5254 5520 2.496817 CTAGCACAGGTCTCCCGC 59.503 66.667 0.00 0.00 35.12 6.13
5255 5521 2.496817 GCTAGCACAGGTCTCCCG 59.503 66.667 10.63 0.00 35.12 5.14
5256 5522 1.990060 TGGCTAGCACAGGTCTCCC 60.990 63.158 18.24 0.00 0.00 4.30
5257 5523 1.219393 GTGGCTAGCACAGGTCTCC 59.781 63.158 18.24 0.00 0.00 3.71
5258 5524 0.174617 GAGTGGCTAGCACAGGTCTC 59.825 60.000 18.24 10.84 0.00 3.36
5259 5525 0.252012 AGAGTGGCTAGCACAGGTCT 60.252 55.000 18.24 13.01 0.00 3.85
5260 5526 0.610687 AAGAGTGGCTAGCACAGGTC 59.389 55.000 18.24 11.17 0.00 3.85
5261 5527 1.059913 AAAGAGTGGCTAGCACAGGT 58.940 50.000 18.24 2.65 0.00 4.00
5262 5528 2.191128 AAAAGAGTGGCTAGCACAGG 57.809 50.000 18.24 0.00 0.00 4.00
5284 5550 3.317993 GCTAGCACAGTTTCCCTCAAAAA 59.682 43.478 10.63 0.00 0.00 1.94
5285 5551 2.884639 GCTAGCACAGTTTCCCTCAAAA 59.115 45.455 10.63 0.00 0.00 2.44
5286 5552 2.504367 GCTAGCACAGTTTCCCTCAAA 58.496 47.619 10.63 0.00 0.00 2.69
5287 5553 1.271379 GGCTAGCACAGTTTCCCTCAA 60.271 52.381 18.24 0.00 0.00 3.02
5288 5554 0.324943 GGCTAGCACAGTTTCCCTCA 59.675 55.000 18.24 0.00 0.00 3.86
5289 5555 0.324943 TGGCTAGCACAGTTTCCCTC 59.675 55.000 18.24 0.00 0.00 4.30
5290 5556 0.036875 GTGGCTAGCACAGTTTCCCT 59.963 55.000 18.24 0.00 0.00 4.20
5291 5557 0.036875 AGTGGCTAGCACAGTTTCCC 59.963 55.000 18.24 0.00 0.00 3.97
5292 5558 1.443802 GAGTGGCTAGCACAGTTTCC 58.556 55.000 18.24 0.00 0.00 3.13
5293 5559 1.071605 CGAGTGGCTAGCACAGTTTC 58.928 55.000 18.24 8.98 0.00 2.78
5294 5560 0.679505 TCGAGTGGCTAGCACAGTTT 59.320 50.000 18.24 1.34 0.00 2.66
5295 5561 0.679505 TTCGAGTGGCTAGCACAGTT 59.320 50.000 18.24 3.73 0.00 3.16
5296 5562 0.038159 GTTCGAGTGGCTAGCACAGT 60.038 55.000 18.24 14.49 0.00 3.55
5297 5563 0.038251 TGTTCGAGTGGCTAGCACAG 60.038 55.000 18.24 10.76 0.00 3.66
5298 5564 0.319555 GTGTTCGAGTGGCTAGCACA 60.320 55.000 18.24 9.44 0.00 4.57
5299 5565 0.319555 TGTGTTCGAGTGGCTAGCAC 60.320 55.000 18.24 12.66 0.00 4.40
5300 5566 0.391228 TTGTGTTCGAGTGGCTAGCA 59.609 50.000 18.24 0.00 0.00 3.49
5301 5567 1.194772 GTTTGTGTTCGAGTGGCTAGC 59.805 52.381 6.04 6.04 0.00 3.42
5302 5568 1.798813 GGTTTGTGTTCGAGTGGCTAG 59.201 52.381 0.00 0.00 0.00 3.42
5303 5569 1.414919 AGGTTTGTGTTCGAGTGGCTA 59.585 47.619 0.00 0.00 0.00 3.93
5304 5570 0.180406 AGGTTTGTGTTCGAGTGGCT 59.820 50.000 0.00 0.00 0.00 4.75
5305 5571 1.021968 AAGGTTTGTGTTCGAGTGGC 58.978 50.000 0.00 0.00 0.00 5.01
5306 5572 4.513692 TCATAAAGGTTTGTGTTCGAGTGG 59.486 41.667 0.00 0.00 32.07 4.00
5307 5573 5.465390 TCTCATAAAGGTTTGTGTTCGAGTG 59.535 40.000 0.00 0.00 32.07 3.51
5308 5574 5.607477 TCTCATAAAGGTTTGTGTTCGAGT 58.393 37.500 0.00 0.00 32.07 4.18
5309 5575 6.727824 ATCTCATAAAGGTTTGTGTTCGAG 57.272 37.500 0.00 0.00 32.07 4.04
5310 5576 7.658167 TGTTATCTCATAAAGGTTTGTGTTCGA 59.342 33.333 0.00 0.00 32.07 3.71
5311 5577 7.802738 TGTTATCTCATAAAGGTTTGTGTTCG 58.197 34.615 0.00 0.00 32.07 3.95
5312 5578 9.959749 TTTGTTATCTCATAAAGGTTTGTGTTC 57.040 29.630 0.00 0.00 32.07 3.18
5313 5579 9.965824 CTTTGTTATCTCATAAAGGTTTGTGTT 57.034 29.630 0.00 0.00 32.07 3.32
5314 5580 8.576442 CCTTTGTTATCTCATAAAGGTTTGTGT 58.424 33.333 0.00 0.00 42.53 3.72
5315 5581 7.542130 GCCTTTGTTATCTCATAAAGGTTTGTG 59.458 37.037 14.05 0.00 46.81 3.33
5316 5582 7.309805 GGCCTTTGTTATCTCATAAAGGTTTGT 60.310 37.037 14.05 0.00 46.81 2.83
5317 5583 7.035612 GGCCTTTGTTATCTCATAAAGGTTTG 58.964 38.462 14.05 0.00 46.81 2.93
5318 5584 6.954102 AGGCCTTTGTTATCTCATAAAGGTTT 59.046 34.615 0.00 3.03 46.81 3.27
5319 5585 6.494059 AGGCCTTTGTTATCTCATAAAGGTT 58.506 36.000 0.00 3.31 46.81 3.50
5320 5586 6.069381 AGAGGCCTTTGTTATCTCATAAAGGT 60.069 38.462 6.77 0.00 46.81 3.50
5322 5588 7.872113 AAGAGGCCTTTGTTATCTCATAAAG 57.128 36.000 6.77 0.00 0.00 1.85
5323 5589 9.920946 AATAAGAGGCCTTTGTTATCTCATAAA 57.079 29.630 6.77 0.00 33.94 1.40
5324 5590 9.561069 GAATAAGAGGCCTTTGTTATCTCATAA 57.439 33.333 6.77 0.00 33.94 1.90
5325 5591 8.938883 AGAATAAGAGGCCTTTGTTATCTCATA 58.061 33.333 6.77 0.00 33.94 2.15
5326 5592 7.810260 AGAATAAGAGGCCTTTGTTATCTCAT 58.190 34.615 6.77 0.00 33.94 2.90
5327 5593 7.200434 AGAATAAGAGGCCTTTGTTATCTCA 57.800 36.000 6.77 0.00 33.94 3.27
5328 5594 9.614792 TTAAGAATAAGAGGCCTTTGTTATCTC 57.385 33.333 6.77 10.74 33.94 2.75
5331 5597 9.700831 ACATTAAGAATAAGAGGCCTTTGTTAT 57.299 29.630 6.77 8.40 33.94 1.89
5333 5599 8.957466 GTACATTAAGAATAAGAGGCCTTTGTT 58.043 33.333 6.77 8.01 33.94 2.83
5334 5600 8.329502 AGTACATTAAGAATAAGAGGCCTTTGT 58.670 33.333 6.77 0.00 33.94 2.83
5335 5601 8.738645 AGTACATTAAGAATAAGAGGCCTTTG 57.261 34.615 6.77 0.00 33.94 2.77
5336 5602 8.773216 AGAGTACATTAAGAATAAGAGGCCTTT 58.227 33.333 6.77 0.00 33.94 3.11
5337 5603 8.325477 AGAGTACATTAAGAATAAGAGGCCTT 57.675 34.615 6.77 0.00 36.43 4.35
5338 5604 7.922699 AGAGTACATTAAGAATAAGAGGCCT 57.077 36.000 3.86 3.86 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.