Multiple sequence alignment - TraesCS4B01G024700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G024700 chr4B 100.000 3667 0 0 1 3667 17490778 17494444 0.000000e+00 6772.0
1 TraesCS4B01G024700 chr4B 80.165 363 58 13 1926 2283 17998467 17998820 3.630000e-65 259.0
2 TraesCS4B01G024700 chr4B 84.337 166 18 6 471 630 19034568 19034731 4.900000e-34 156.0
3 TraesCS4B01G024700 chr4B 85.470 117 14 2 2849 2965 17491063 17491176 6.430000e-23 119.0
4 TraesCS4B01G024700 chr4B 85.470 117 14 2 286 399 17493626 17493742 6.430000e-23 119.0
5 TraesCS4B01G024700 chr4B 91.304 69 5 1 1857 1925 17492587 17492654 3.900000e-15 93.5
6 TraesCS4B01G024700 chr4B 91.304 69 5 1 1810 1877 17492634 17492702 3.900000e-15 93.5
7 TraesCS4B01G024700 chr4D 92.480 1250 66 15 1726 2968 9435038 9436266 0.000000e+00 1762.0
8 TraesCS4B01G024700 chr4D 90.209 623 31 6 1124 1730 9434372 9434980 0.000000e+00 785.0
9 TraesCS4B01G024700 chr4D 92.443 397 20 6 1 392 9433008 9433399 3.200000e-155 558.0
10 TraesCS4B01G024700 chr4D 84.514 607 25 34 453 1029 9433420 9433987 1.500000e-148 536.0
11 TraesCS4B01G024700 chr4D 87.097 279 20 9 2985 3261 9436253 9436517 5.950000e-78 302.0
12 TraesCS4B01G024700 chr4D 79.452 365 59 13 1926 2283 9442175 9442530 1.020000e-60 244.0
13 TraesCS4B01G024700 chr4D 96.241 133 5 0 1 133 9402636 9402768 6.170000e-53 219.0
14 TraesCS4B01G024700 chr4D 85.965 114 9 5 2849 2958 9433289 9433399 8.320000e-22 115.0
15 TraesCS4B01G024700 chr4D 86.765 68 9 0 1810 1877 9435169 9435236 3.930000e-10 76.8
16 TraesCS4B01G024700 chr4D 73.077 286 43 20 3054 3316 20456652 20456926 1.830000e-08 71.3
17 TraesCS4B01G024700 chr4D 93.182 44 2 1 3614 3657 9437282 9437324 3.060000e-06 63.9
18 TraesCS4B01G024700 chr4A 85.803 1289 94 39 1727 2965 594037125 594035876 0.000000e+00 1284.0
19 TraesCS4B01G024700 chr4A 83.557 967 84 41 1 909 594039249 594038300 0.000000e+00 835.0
20 TraesCS4B01G024700 chr4A 85.565 575 32 18 1124 1675 594037865 594037319 4.140000e-154 555.0
21 TraesCS4B01G024700 chr4A 91.257 183 16 0 1926 2108 594028914 594028732 2.190000e-62 250.0
22 TraesCS4B01G024700 chr4A 91.971 137 11 0 286 422 594035989 594035853 3.740000e-45 193.0
23 TraesCS4B01G024700 chr4A 92.958 71 4 1 1857 1927 594037042 594036973 6.480000e-18 102.0
24 TraesCS4B01G024700 chr4A 90.698 43 4 0 3275 3317 729289007 729288965 1.420000e-04 58.4
25 TraesCS4B01G024700 chr7D 92.014 576 34 6 1810 2385 498829469 498830032 0.000000e+00 798.0
26 TraesCS4B01G024700 chr7D 92.040 201 15 1 1726 1926 498829338 498829537 7.750000e-72 281.0
27 TraesCS4B01G024700 chr7D 91.241 137 5 5 2392 2523 498830091 498830225 2.910000e-41 180.0
28 TraesCS4B01G024700 chr7D 83.422 187 23 7 3054 3235 100255100 100255283 2.270000e-37 167.0
29 TraesCS4B01G024700 chr5D 92.014 576 34 6 1810 2385 419400607 419401170 0.000000e+00 798.0
30 TraesCS4B01G024700 chr5D 92.040 201 15 1 1726 1926 419400476 419400675 7.750000e-72 281.0
31 TraesCS4B01G024700 chr5D 91.971 137 5 4 2392 2523 419401229 419401364 1.740000e-43 187.0
32 TraesCS4B01G024700 chr5D 93.878 49 3 0 3269 3317 394834428 394834380 1.410000e-09 75.0
33 TraesCS4B01G024700 chr5D 86.765 68 7 1 1810 1877 419400654 419400719 1.410000e-09 75.0
34 TraesCS4B01G024700 chr5D 97.143 35 1 0 3273 3307 487466410 487466444 3.950000e-05 60.2
35 TraesCS4B01G024700 chr2B 80.000 195 31 8 3052 3242 712965065 712965255 1.780000e-28 137.0
36 TraesCS4B01G024700 chr7B 83.333 138 17 5 3054 3188 55772174 55772308 4.970000e-24 122.0
37 TraesCS4B01G024700 chr7B 90.385 52 5 0 3266 3317 126083343 126083394 6.570000e-08 69.4
38 TraesCS4B01G024700 chr7B 89.796 49 5 0 3269 3317 450580359 450580311 3.060000e-06 63.9
39 TraesCS4B01G024700 chr7B 87.755 49 6 0 3269 3317 448732668 448732716 1.420000e-04 58.4
40 TraesCS4B01G024700 chr2D 75.728 206 26 13 3123 3317 160793756 160793564 8.440000e-12 82.4
41 TraesCS4B01G024700 chr5B 94.118 34 2 0 3269 3302 343830877 343830910 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G024700 chr4B 17490778 17494444 3666 False 1439.400000 6772 90.709600 1 3667 5 chr4B.!!$F3 3666
1 TraesCS4B01G024700 chr4D 9433008 9437324 4316 False 524.837500 1762 89.081875 1 3657 8 chr4D.!!$F4 3656
2 TraesCS4B01G024700 chr4A 594035853 594039249 3396 True 593.800000 1284 87.970800 1 2965 5 chr4A.!!$R3 2964
3 TraesCS4B01G024700 chr7D 498829338 498830225 887 False 419.666667 798 91.765000 1726 2523 3 chr7D.!!$F2 797
4 TraesCS4B01G024700 chr5D 419400476 419401364 888 False 335.250000 798 90.697500 1726 2523 4 chr5D.!!$F2 797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 1018 0.0293 CTGCAACGGTCAGGTTGTTG 59.971 55.0 7.21 0.22 46.93 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2822 3530 0.034476 CTGAGAGCTCCAGCACAACA 59.966 55.0 10.93 0.0 45.16 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 4.354893 ACATTTTGGCCATGAATGTGTT 57.645 36.364 31.47 17.06 41.14 3.32
81 82 9.912634 ATGAATGTGTTATTGGTAGTTTCAAAG 57.087 29.630 0.00 0.00 0.00 2.77
208 210 8.129211 GCAGAACAAATATAACTGTTGGGTATC 58.871 37.037 2.69 0.00 35.93 2.24
277 279 3.053395 ACCATGCTATTTCTCCCATGTGT 60.053 43.478 0.00 0.00 34.69 3.72
278 280 3.317149 CCATGCTATTTCTCCCATGTGTG 59.683 47.826 0.00 0.00 34.69 3.82
316 318 2.928676 GCACGATGCACCACACTATGG 61.929 57.143 0.00 0.00 44.12 2.74
346 352 5.197549 CAGTTTGTGATCTTGTGTACAACG 58.802 41.667 0.00 0.00 33.25 4.10
428 434 8.474710 TCAATCAGAATATCAGATGAGAGTGA 57.525 34.615 0.00 0.00 0.00 3.41
450 456 9.895138 AGTGACCTTTGTAAAAGTACTCTTTAA 57.105 29.630 0.00 0.00 42.26 1.52
658 699 0.542702 ACCCGACCCGAGACCTAAAA 60.543 55.000 0.00 0.00 0.00 1.52
659 700 0.609662 CCCGACCCGAGACCTAAAAA 59.390 55.000 0.00 0.00 0.00 1.94
744 785 1.439644 GGAGAGAAAGATCGCCGCT 59.560 57.895 0.00 0.00 29.11 5.52
749 790 1.884926 GAAAGATCGCCGCTCCAGG 60.885 63.158 0.00 0.00 0.00 4.45
778 832 2.047844 CACCACTCTCGGCAGGTG 60.048 66.667 0.00 0.00 44.72 4.00
779 833 2.524394 ACCACTCTCGGCAGGTGT 60.524 61.111 0.00 0.00 32.04 4.16
780 834 2.047844 CCACTCTCGGCAGGTGTG 60.048 66.667 0.00 0.00 0.00 3.82
781 835 2.737180 CACTCTCGGCAGGTGTGT 59.263 61.111 0.00 0.00 0.00 3.72
783 837 2.740055 CTCTCGGCAGGTGTGTGC 60.740 66.667 0.00 0.00 43.19 4.57
784 838 3.231889 CTCTCGGCAGGTGTGTGCT 62.232 63.158 0.00 0.00 43.45 4.40
785 839 1.877576 CTCTCGGCAGGTGTGTGCTA 61.878 60.000 0.00 0.00 43.45 3.49
786 840 1.005037 CTCGGCAGGTGTGTGCTAA 60.005 57.895 0.00 0.00 43.45 3.09
788 842 0.391130 TCGGCAGGTGTGTGCTAATC 60.391 55.000 0.00 0.00 43.45 1.75
789 843 0.391661 CGGCAGGTGTGTGCTAATCT 60.392 55.000 0.00 0.00 43.45 2.40
790 844 1.089920 GGCAGGTGTGTGCTAATCTG 58.910 55.000 0.00 0.00 43.45 2.90
791 845 1.611673 GGCAGGTGTGTGCTAATCTGT 60.612 52.381 0.00 0.00 43.45 3.41
792 846 1.734465 GCAGGTGTGTGCTAATCTGTC 59.266 52.381 0.00 0.00 40.54 3.51
793 847 2.350522 CAGGTGTGTGCTAATCTGTCC 58.649 52.381 0.00 0.00 0.00 4.02
794 848 2.027745 CAGGTGTGTGCTAATCTGTCCT 60.028 50.000 0.00 0.00 0.00 3.85
795 849 2.234908 AGGTGTGTGCTAATCTGTCCTC 59.765 50.000 0.00 0.00 0.00 3.71
797 851 2.996621 GTGTGTGCTAATCTGTCCTCAC 59.003 50.000 0.00 0.00 0.00 3.51
798 852 2.028112 TGTGTGCTAATCTGTCCTCACC 60.028 50.000 0.00 0.00 0.00 4.02
799 853 1.204704 TGTGCTAATCTGTCCTCACCG 59.795 52.381 0.00 0.00 0.00 4.94
841 918 4.931601 TGATAGCGATTAGGCTGCAATAAG 59.068 41.667 0.50 0.00 44.50 1.73
862 939 3.009473 AGTTTTGAAGCCCAGCTATCTGA 59.991 43.478 0.00 0.00 42.95 3.27
866 943 0.749649 AAGCCCAGCTATCTGACTCG 59.250 55.000 0.00 0.00 42.95 4.18
869 946 1.393603 CCCAGCTATCTGACTCGTCA 58.606 55.000 0.00 0.00 42.95 4.35
870 947 1.751351 CCCAGCTATCTGACTCGTCAA 59.249 52.381 1.02 0.00 42.95 3.18
873 950 4.320861 CCCAGCTATCTGACTCGTCAATAG 60.321 50.000 16.35 16.35 42.95 1.73
906 983 2.270986 CCCAGAAACCCAGCAGCAC 61.271 63.158 0.00 0.00 0.00 4.40
933 1010 1.595109 CAGTCTGCTGCAACGGTCA 60.595 57.895 3.02 0.00 35.77 4.02
935 1012 2.031012 TCTGCTGCAACGGTCAGG 59.969 61.111 3.02 0.00 32.41 3.86
936 1013 2.281070 CTGCTGCAACGGTCAGGT 60.281 61.111 3.02 0.00 32.41 4.00
937 1014 1.893808 CTGCTGCAACGGTCAGGTT 60.894 57.895 3.02 0.00 32.41 3.50
939 1016 2.186826 GCTGCAACGGTCAGGTTGT 61.187 57.895 7.21 0.00 46.93 3.32
940 1017 1.724582 GCTGCAACGGTCAGGTTGTT 61.725 55.000 7.21 0.00 46.93 2.83
941 1018 0.029300 CTGCAACGGTCAGGTTGTTG 59.971 55.000 7.21 0.22 46.93 3.33
942 1019 0.678366 TGCAACGGTCAGGTTGTTGT 60.678 50.000 7.21 0.00 46.93 3.32
943 1020 0.454196 GCAACGGTCAGGTTGTTGTT 59.546 50.000 7.21 0.00 46.93 2.83
944 1021 1.533129 GCAACGGTCAGGTTGTTGTTC 60.533 52.381 7.21 0.00 46.93 3.18
945 1022 2.014128 CAACGGTCAGGTTGTTGTTCT 58.986 47.619 0.00 0.00 41.77 3.01
946 1023 1.949465 ACGGTCAGGTTGTTGTTCTC 58.051 50.000 0.00 0.00 0.00 2.87
947 1024 1.485066 ACGGTCAGGTTGTTGTTCTCT 59.515 47.619 0.00 0.00 0.00 3.10
953 1030 6.238648 CGGTCAGGTTGTTGTTCTCTTTTTAT 60.239 38.462 0.00 0.00 0.00 1.40
962 1039 8.378172 TGTTGTTCTCTTTTTATCATCGTCTT 57.622 30.769 0.00 0.00 0.00 3.01
973 1050 1.081892 CATCGTCTTGGACAAGGCAG 58.918 55.000 15.94 9.15 42.86 4.85
977 1054 1.601759 TCTTGGACAAGGCAGCAGC 60.602 57.895 11.76 0.00 38.88 5.25
978 1055 1.900016 CTTGGACAAGGCAGCAGCA 60.900 57.895 2.65 0.00 44.61 4.41
979 1056 1.228644 TTGGACAAGGCAGCAGCAT 60.229 52.632 2.65 0.00 44.61 3.79
980 1057 0.038021 TTGGACAAGGCAGCAGCATA 59.962 50.000 2.65 0.00 44.61 3.14
1012 1097 3.356529 AGGCAAGGATGGTGAGTTTAG 57.643 47.619 0.00 0.00 0.00 1.85
1029 1114 5.799213 AGTTTAGTTCATCTCCCAGTTCAG 58.201 41.667 0.00 0.00 0.00 3.02
1032 1117 4.278975 AGTTCATCTCCCAGTTCAGTTC 57.721 45.455 0.00 0.00 0.00 3.01
1034 1119 2.907892 TCATCTCCCAGTTCAGTTCCT 58.092 47.619 0.00 0.00 0.00 3.36
1036 1121 2.103153 TCTCCCAGTTCAGTTCCTGT 57.897 50.000 0.00 0.00 32.61 4.00
1037 1122 1.694150 TCTCCCAGTTCAGTTCCTGTG 59.306 52.381 0.00 0.00 32.61 3.66
1039 1124 2.632996 CTCCCAGTTCAGTTCCTGTGTA 59.367 50.000 0.00 0.00 32.61 2.90
1040 1125 3.248024 TCCCAGTTCAGTTCCTGTGTAT 58.752 45.455 0.00 0.00 32.61 2.29
1041 1126 4.422057 TCCCAGTTCAGTTCCTGTGTATA 58.578 43.478 0.00 0.00 32.61 1.47
1042 1127 4.222145 TCCCAGTTCAGTTCCTGTGTATAC 59.778 45.833 0.00 0.00 32.61 1.47
1043 1128 4.223032 CCCAGTTCAGTTCCTGTGTATACT 59.777 45.833 4.17 0.00 32.61 2.12
1044 1129 5.421056 CCCAGTTCAGTTCCTGTGTATACTA 59.579 44.000 4.17 0.00 32.61 1.82
1045 1130 6.098409 CCCAGTTCAGTTCCTGTGTATACTAT 59.902 42.308 4.17 0.00 32.61 2.12
1047 1132 7.068839 CCAGTTCAGTTCCTGTGTATACTATCT 59.931 40.741 4.17 0.00 32.61 1.98
1051 1136 7.813331 TCAGTTCCTGTGTATACTATCTAGGT 58.187 38.462 4.17 0.00 32.61 3.08
1053 1138 8.353684 CAGTTCCTGTGTATACTATCTAGGTTG 58.646 40.741 4.17 0.00 0.00 3.77
1055 1140 8.693625 GTTCCTGTGTATACTATCTAGGTTGTT 58.306 37.037 4.17 0.00 0.00 2.83
1056 1141 8.834004 TCCTGTGTATACTATCTAGGTTGTTT 57.166 34.615 4.17 0.00 0.00 2.83
1057 1142 8.910944 TCCTGTGTATACTATCTAGGTTGTTTC 58.089 37.037 4.17 0.00 0.00 2.78
1058 1143 8.915036 CCTGTGTATACTATCTAGGTTGTTTCT 58.085 37.037 4.17 0.00 0.00 2.52
1064 1149 6.236558 ACTATCTAGGTTGTTTCTAAGGCC 57.763 41.667 0.00 0.00 0.00 5.19
1066 1151 5.780958 ATCTAGGTTGTTTCTAAGGCCTT 57.219 39.130 24.18 24.18 0.00 4.35
1069 1154 7.081857 TCTAGGTTGTTTCTAAGGCCTTTTA 57.918 36.000 26.08 9.53 0.00 1.52
1070 1155 7.696017 TCTAGGTTGTTTCTAAGGCCTTTTAT 58.304 34.615 26.08 0.31 0.00 1.40
1071 1156 8.168058 TCTAGGTTGTTTCTAAGGCCTTTTATT 58.832 33.333 26.08 0.00 0.00 1.40
1072 1157 6.993079 AGGTTGTTTCTAAGGCCTTTTATTG 58.007 36.000 26.08 9.33 0.00 1.90
1073 1158 6.553476 AGGTTGTTTCTAAGGCCTTTTATTGT 59.447 34.615 26.08 0.00 0.00 2.71
1074 1159 6.645003 GGTTGTTTCTAAGGCCTTTTATTGTG 59.355 38.462 26.08 5.81 0.00 3.33
1075 1160 7.430441 GTTGTTTCTAAGGCCTTTTATTGTGA 58.570 34.615 26.08 1.01 0.00 3.58
1076 1161 7.775053 TGTTTCTAAGGCCTTTTATTGTGAT 57.225 32.000 26.08 0.00 0.00 3.06
1077 1162 8.189119 TGTTTCTAAGGCCTTTTATTGTGATT 57.811 30.769 26.08 0.00 0.00 2.57
1078 1163 8.087750 TGTTTCTAAGGCCTTTTATTGTGATTG 58.912 33.333 26.08 0.00 0.00 2.67
1079 1164 7.775053 TTCTAAGGCCTTTTATTGTGATTGT 57.225 32.000 26.08 0.00 0.00 2.71
1080 1165 7.775053 TCTAAGGCCTTTTATTGTGATTGTT 57.225 32.000 26.08 0.00 0.00 2.83
1081 1166 8.189119 TCTAAGGCCTTTTATTGTGATTGTTT 57.811 30.769 26.08 0.00 0.00 2.83
1082 1167 8.303876 TCTAAGGCCTTTTATTGTGATTGTTTC 58.696 33.333 26.08 0.00 0.00 2.78
1083 1168 6.670695 AGGCCTTTTATTGTGATTGTTTCT 57.329 33.333 0.00 0.00 0.00 2.52
1084 1169 7.775053 AGGCCTTTTATTGTGATTGTTTCTA 57.225 32.000 0.00 0.00 0.00 2.10
1086 1171 8.306761 AGGCCTTTTATTGTGATTGTTTCTAAG 58.693 33.333 0.00 0.00 0.00 2.18
1089 1174 9.626045 CCTTTTATTGTGATTGTTTCTAAGGTC 57.374 33.333 0.00 0.00 0.00 3.85
1094 1179 7.873719 TTGTGATTGTTTCTAAGGTCTTTCA 57.126 32.000 0.00 0.00 0.00 2.69
1096 1181 7.054124 TGTGATTGTTTCTAAGGTCTTTCACT 58.946 34.615 0.00 0.00 32.93 3.41
1097 1182 7.012327 TGTGATTGTTTCTAAGGTCTTTCACTG 59.988 37.037 0.00 0.00 32.93 3.66
1099 1184 5.036117 TGTTTCTAAGGTCTTTCACTGCT 57.964 39.130 0.00 0.00 0.00 4.24
1100 1185 5.437060 TGTTTCTAAGGTCTTTCACTGCTT 58.563 37.500 0.00 0.00 0.00 3.91
1101 1186 5.885912 TGTTTCTAAGGTCTTTCACTGCTTT 59.114 36.000 0.00 0.00 0.00 3.51
1102 1187 6.183360 TGTTTCTAAGGTCTTTCACTGCTTTG 60.183 38.462 0.00 0.00 0.00 2.77
1104 1189 6.169557 TCTAAGGTCTTTCACTGCTTTGTA 57.830 37.500 0.00 0.00 0.00 2.41
1105 1190 6.588204 TCTAAGGTCTTTCACTGCTTTGTAA 58.412 36.000 0.00 0.00 0.00 2.41
1107 1192 5.757850 AGGTCTTTCACTGCTTTGTAAAG 57.242 39.130 0.05 0.05 39.03 1.85
1122 1502 7.966157 CTTTGTAAAGCTGATTGATGATCAC 57.034 36.000 0.00 0.00 39.83 3.06
1174 1554 9.724839 TTATTTTGCGTGGCTTAACTAATAATC 57.275 29.630 0.00 0.00 0.00 1.75
1181 1561 6.147821 CGTGGCTTAACTAATAATCTCCATGG 59.852 42.308 4.97 4.97 0.00 3.66
1258 1638 7.148557 GGTGACATAGCTGTTAAGAGAAAGAAC 60.149 40.741 3.33 0.00 35.14 3.01
1282 1662 1.143838 TGGCGCGTCAGCATTCTAT 59.856 52.632 10.57 0.00 45.49 1.98
1296 1676 6.489022 TCAGCATTCTATAGCGAGGTTAGTAA 59.511 38.462 0.00 0.00 35.48 2.24
1310 1690 8.062448 GCGAGGTTAGTAATGATGTGAATAAAC 58.938 37.037 0.00 0.00 0.00 2.01
1363 1751 5.445939 CGCATTACTTGTTGACCTGATGTAC 60.446 44.000 0.00 0.00 0.00 2.90
1378 1766 7.175104 ACCTGATGTACATGGTTGTTTAATCT 58.825 34.615 14.43 0.00 37.28 2.40
1379 1767 8.325787 ACCTGATGTACATGGTTGTTTAATCTA 58.674 33.333 14.43 0.00 37.28 1.98
1380 1768 9.342308 CCTGATGTACATGGTTGTTTAATCTAT 57.658 33.333 14.43 0.00 37.28 1.98
1440 1828 7.005296 TGCTAACAAAAATAAGGTGGGAAGTA 58.995 34.615 0.00 0.00 0.00 2.24
1480 1868 8.810652 TTGTTTGTTTGGATTTATGCTACTTC 57.189 30.769 0.00 0.00 0.00 3.01
1490 1878 8.352201 TGGATTTATGCTACTTCAAATATGCAC 58.648 33.333 0.00 0.00 33.16 4.57
1536 1924 9.238368 CCTTTCCTGTAATAAACATACAAGGAA 57.762 33.333 0.00 0.00 38.39 3.36
1635 2038 7.933577 TGATAATCTGTCCAACTATAAGCCAAG 59.066 37.037 0.00 0.00 0.00 3.61
1652 2055 4.282195 AGCCAAGTATCTATCTGTACTGCC 59.718 45.833 0.00 0.00 31.83 4.85
1676 2079 2.028476 TCCGGACGAATTTGAGATGTGT 60.028 45.455 0.00 0.00 0.00 3.72
1678 2081 3.424829 CCGGACGAATTTGAGATGTGTTG 60.425 47.826 0.00 0.00 0.00 3.33
1680 2083 3.058293 GGACGAATTTGAGATGTGTTGCA 60.058 43.478 0.00 0.00 0.00 4.08
1682 2085 5.163764 GGACGAATTTGAGATGTGTTGCATA 60.164 40.000 0.00 0.00 38.06 3.14
1687 2171 8.898792 CGAATTTGAGATGTGTTGCATATATTG 58.101 33.333 0.00 0.00 38.06 1.90
1710 2194 4.495184 GGTGTTGTCTGTAAACCTTTGACG 60.495 45.833 0.00 0.00 0.00 4.35
1711 2195 4.093850 GTGTTGTCTGTAAACCTTTGACGT 59.906 41.667 0.00 0.00 0.00 4.34
1729 2275 3.467803 ACGTCCATTAAGGCATTAGCTC 58.532 45.455 0.00 0.00 41.70 4.09
1760 2306 5.488919 TCATAGGTCCAGAGGTTTGAGAAAT 59.511 40.000 0.00 0.00 0.00 2.17
1761 2307 4.731313 AGGTCCAGAGGTTTGAGAAATT 57.269 40.909 0.00 0.00 0.00 1.82
1814 2360 8.409358 ACTTGAAGCATCACTAAATAAACCTT 57.591 30.769 0.00 0.00 34.61 3.50
1830 2376 7.894376 ATAAACCTTTTTGTCATTGCTGATG 57.106 32.000 0.00 0.00 37.08 3.07
1861 2407 7.942341 TGGAATCAGTATTGTCTTGTTAACCTT 59.058 33.333 2.48 0.00 0.00 3.50
1867 2413 9.233232 CAGTATTGTCTTGTTAACCTTTTTGTC 57.767 33.333 2.48 0.00 0.00 3.18
1872 2418 7.831753 TGTCTTGTTAACCTTTTTGTCATTGA 58.168 30.769 2.48 0.00 0.00 2.57
1877 2423 8.815141 TGTTAACCTTTTTGTCATTGATGATG 57.185 30.769 2.48 0.00 39.30 3.07
1905 2496 8.784043 ACTTGGAATCAGTATTGTCTTGTTAAC 58.216 33.333 0.00 0.00 0.00 2.01
1946 2537 1.798735 CAGGCAATTGAGCTGGACG 59.201 57.895 10.34 0.00 34.17 4.79
2080 2671 6.072286 GGTTAAAAGGTTACTACAGGAAAGGC 60.072 42.308 0.00 0.00 0.00 4.35
2135 2726 2.427506 CTAGTTTTCCTGACCTGCACC 58.572 52.381 0.00 0.00 0.00 5.01
2149 2740 3.201297 CACCTGTGTGTGTGCGCA 61.201 61.111 5.66 5.66 37.72 6.09
2161 2752 4.758251 TGCGCATCACCACCTCCG 62.758 66.667 5.66 0.00 0.00 4.63
2165 2756 3.716195 CATCACCACCTCCGCCCA 61.716 66.667 0.00 0.00 0.00 5.36
2171 2762 1.351017 CACCACCTCCGCCCATATAAT 59.649 52.381 0.00 0.00 0.00 1.28
2189 2780 2.634815 ATTCTGCCTAGCTGTCCATG 57.365 50.000 0.00 0.00 0.00 3.66
2193 2784 2.837591 TCTGCCTAGCTGTCCATGTTTA 59.162 45.455 0.00 0.00 0.00 2.01
2194 2785 2.939103 CTGCCTAGCTGTCCATGTTTAC 59.061 50.000 0.00 0.00 0.00 2.01
2212 2803 5.526111 TGTTTACAGGAGTACAAAGAAGCAC 59.474 40.000 0.00 0.00 0.00 4.40
2249 2840 0.606673 GGACTGAAACTGGACCCTGC 60.607 60.000 0.00 0.00 0.00 4.85
2283 2874 5.755409 TGGAGAAAGTATTCCAGTAAGCA 57.245 39.130 0.00 0.00 36.12 3.91
2308 2899 8.306761 CACCTAAATTATGTTTCAGCCTTTTCT 58.693 33.333 0.00 0.00 0.00 2.52
2309 2900 8.870116 ACCTAAATTATGTTTCAGCCTTTTCTT 58.130 29.630 0.00 0.00 0.00 2.52
2310 2901 9.358872 CCTAAATTATGTTTCAGCCTTTTCTTC 57.641 33.333 0.00 0.00 0.00 2.87
2381 2972 3.561143 TGCTTGTGTTTGTGAGGGTAAT 58.439 40.909 0.00 0.00 0.00 1.89
2416 3061 3.375299 CCTAGATTGAAGGGCTGAAAACG 59.625 47.826 0.00 0.00 0.00 3.60
2422 3067 2.498078 TGAAGGGCTGAAAACGGTTTTT 59.502 40.909 18.93 2.52 37.65 1.94
2481 3131 4.590850 AAGGATGACTTGCCAGAAAAAC 57.409 40.909 0.00 0.00 38.21 2.43
2499 3149 2.712057 ACAGAAAATGCTTCAAGCCG 57.288 45.000 7.01 0.00 41.51 5.52
2654 3311 7.966204 CCCGTTTTGTACACAATATTTAGGAAG 59.034 37.037 0.00 0.00 35.55 3.46
2688 3353 5.776744 AGCTGTGAGATTGGTTTTTGAATC 58.223 37.500 0.00 0.00 0.00 2.52
2694 3359 0.319125 TTGGTTTTTGAATCGCGCCC 60.319 50.000 0.00 0.00 0.00 6.13
2722 3387 7.759489 ACAGCTTGGTTCTGTTTTATATTCA 57.241 32.000 0.00 0.00 41.61 2.57
2724 3389 7.029563 CAGCTTGGTTCTGTTTTATATTCACC 58.970 38.462 0.00 0.00 0.00 4.02
2727 3392 7.870445 GCTTGGTTCTGTTTTATATTCACCAAA 59.130 33.333 0.00 0.00 41.37 3.28
2728 3393 9.757227 CTTGGTTCTGTTTTATATTCACCAAAA 57.243 29.630 0.00 0.00 41.37 2.44
2822 3530 9.996554 TTTATGTATGATCTTACGGTTCATGAT 57.003 29.630 12.61 2.99 35.75 2.45
2823 3531 7.895975 ATGTATGATCTTACGGTTCATGATG 57.104 36.000 12.61 0.00 35.75 3.07
2824 3532 6.816136 TGTATGATCTTACGGTTCATGATGT 58.184 36.000 12.61 0.00 35.75 3.06
2887 3595 4.186159 TGATGCATCACACTATGACACTG 58.814 43.478 25.42 0.00 41.24 3.66
2892 3600 4.619160 GCATCACACTATGACACTGTCAGA 60.619 45.833 16.80 11.68 46.04 3.27
2897 3605 6.208599 TCACACTATGACACTGTCAGATTGTA 59.791 38.462 22.24 12.48 42.58 2.41
2908 3616 8.097038 ACACTGTCAGATTGTAATCTTGTGTAT 58.903 33.333 19.29 7.04 42.96 2.29
2928 3636 7.225931 TGTGTATAACAGTTCCTTTTCACTGAC 59.774 37.037 6.32 0.00 42.74 3.51
2953 3661 5.683876 AGTTAGAAGCATTGCCTCTCTAA 57.316 39.130 12.94 14.75 31.34 2.10
2954 3662 6.054860 AGTTAGAAGCATTGCCTCTCTAAA 57.945 37.500 12.94 0.43 31.34 1.85
2955 3663 5.877564 AGTTAGAAGCATTGCCTCTCTAAAC 59.122 40.000 12.94 11.86 31.34 2.01
2956 3664 4.566426 AGAAGCATTGCCTCTCTAAACT 57.434 40.909 4.70 0.00 0.00 2.66
2957 3665 4.512484 AGAAGCATTGCCTCTCTAAACTC 58.488 43.478 4.70 0.00 0.00 3.01
2958 3666 3.988976 AGCATTGCCTCTCTAAACTCA 57.011 42.857 4.70 0.00 0.00 3.41
2959 3667 3.604582 AGCATTGCCTCTCTAAACTCAC 58.395 45.455 4.70 0.00 0.00 3.51
2960 3668 3.008375 AGCATTGCCTCTCTAAACTCACA 59.992 43.478 4.70 0.00 0.00 3.58
2961 3669 3.753272 GCATTGCCTCTCTAAACTCACAA 59.247 43.478 0.00 0.00 0.00 3.33
2962 3670 4.142730 GCATTGCCTCTCTAAACTCACAAG 60.143 45.833 0.00 0.00 0.00 3.16
2963 3671 3.045601 TGCCTCTCTAAACTCACAAGC 57.954 47.619 0.00 0.00 0.00 4.01
2964 3672 2.289694 TGCCTCTCTAAACTCACAAGCC 60.290 50.000 0.00 0.00 0.00 4.35
2965 3673 2.937433 GCCTCTCTAAACTCACAAGCCC 60.937 54.545 0.00 0.00 0.00 5.19
2966 3674 2.611518 CTCTCTAAACTCACAAGCCCG 58.388 52.381 0.00 0.00 0.00 6.13
2967 3675 1.275291 TCTCTAAACTCACAAGCCCGG 59.725 52.381 0.00 0.00 0.00 5.73
2968 3676 1.002087 CTCTAAACTCACAAGCCCGGT 59.998 52.381 0.00 0.00 0.00 5.28
2969 3677 1.418637 TCTAAACTCACAAGCCCGGTT 59.581 47.619 0.00 0.00 0.00 4.44
2970 3678 1.804748 CTAAACTCACAAGCCCGGTTC 59.195 52.381 0.00 0.00 0.00 3.62
2971 3679 0.182775 AAACTCACAAGCCCGGTTCT 59.817 50.000 0.00 0.00 0.00 3.01
2972 3680 0.250338 AACTCACAAGCCCGGTTCTC 60.250 55.000 0.00 0.00 0.00 2.87
2973 3681 1.738099 CTCACAAGCCCGGTTCTCG 60.738 63.158 0.00 0.00 38.88 4.04
2974 3682 3.423154 CACAAGCCCGGTTCTCGC 61.423 66.667 0.00 0.00 37.59 5.03
2975 3683 3.936203 ACAAGCCCGGTTCTCGCA 61.936 61.111 0.00 0.00 37.59 5.10
2976 3684 2.668212 CAAGCCCGGTTCTCGCAA 60.668 61.111 0.00 0.00 37.59 4.85
2977 3685 2.112297 AAGCCCGGTTCTCGCAAA 59.888 55.556 0.00 0.00 37.59 3.68
2978 3686 1.527380 AAGCCCGGTTCTCGCAAAA 60.527 52.632 0.00 0.00 37.59 2.44
2979 3687 1.104577 AAGCCCGGTTCTCGCAAAAA 61.105 50.000 0.00 0.00 37.59 1.94
2998 3706 3.200918 AAAAACTCACAAGCCCGGT 57.799 47.368 0.00 0.00 0.00 5.28
3019 3727 6.760298 CCGGTATCAATCAGAATATCAGATGG 59.240 42.308 0.00 0.00 0.00 3.51
3025 3733 7.157347 TCAATCAGAATATCAGATGGCACTAC 58.843 38.462 0.00 0.00 0.00 2.73
3050 3759 4.618920 AAAAAGACCTCACTATCCGTGT 57.381 40.909 0.00 0.00 44.16 4.49
3081 3790 3.429141 GACGTCGAGGTCGGAGCA 61.429 66.667 21.13 0.00 40.29 4.26
3118 3827 1.589993 CGACATCGCGCTGGATTCT 60.590 57.895 15.16 0.00 0.00 2.40
3140 3849 1.112113 CGGAATCGGAGAGGGAAGAA 58.888 55.000 0.00 0.00 43.63 2.52
3144 3853 2.080654 ATCGGAGAGGGAAGAAGAGG 57.919 55.000 0.00 0.00 43.63 3.69
3149 3858 0.324830 AGAGGGAAGAAGAGGGGACG 60.325 60.000 0.00 0.00 0.00 4.79
3159 3868 3.700831 GAGGGGACGGAGCGAGAGA 62.701 68.421 0.00 0.00 0.00 3.10
3160 3869 3.213402 GGGGACGGAGCGAGAGAG 61.213 72.222 0.00 0.00 0.00 3.20
3161 3870 3.213402 GGGACGGAGCGAGAGAGG 61.213 72.222 0.00 0.00 0.00 3.69
3162 3871 2.124653 GGACGGAGCGAGAGAGGA 60.125 66.667 0.00 0.00 0.00 3.71
3163 3872 1.527380 GGACGGAGCGAGAGAGGAT 60.527 63.158 0.00 0.00 0.00 3.24
3164 3873 1.652012 GACGGAGCGAGAGAGGATG 59.348 63.158 0.00 0.00 0.00 3.51
3165 3874 1.791103 GACGGAGCGAGAGAGGATGG 61.791 65.000 0.00 0.00 0.00 3.51
3166 3875 1.826054 CGGAGCGAGAGAGGATGGT 60.826 63.158 0.00 0.00 0.00 3.55
3167 3876 1.739049 GGAGCGAGAGAGGATGGTG 59.261 63.158 0.00 0.00 0.00 4.17
3168 3877 1.739049 GAGCGAGAGAGGATGGTGG 59.261 63.158 0.00 0.00 0.00 4.61
3169 3878 0.753479 GAGCGAGAGAGGATGGTGGA 60.753 60.000 0.00 0.00 0.00 4.02
3170 3879 0.754957 AGCGAGAGAGGATGGTGGAG 60.755 60.000 0.00 0.00 0.00 3.86
3171 3880 1.040339 GCGAGAGAGGATGGTGGAGT 61.040 60.000 0.00 0.00 0.00 3.85
3172 3881 0.743688 CGAGAGAGGATGGTGGAGTG 59.256 60.000 0.00 0.00 0.00 3.51
3178 3887 1.686052 GAGGATGGTGGAGTGAGCTAG 59.314 57.143 0.00 0.00 0.00 3.42
3183 3892 0.537653 GGTGGAGTGAGCTAGGGTTC 59.462 60.000 0.00 0.00 0.00 3.62
3235 3945 4.388499 ACGTGGGGTCGGTGATGC 62.388 66.667 0.00 0.00 34.94 3.91
3242 3952 4.760047 GTCGGTGATGCGCTGGGT 62.760 66.667 9.73 0.00 0.00 4.51
3250 3960 1.996786 GATGCGCTGGGTTGACATGG 61.997 60.000 9.73 0.00 0.00 3.66
3251 3961 2.359850 GCGCTGGGTTGACATGGA 60.360 61.111 0.00 0.00 0.00 3.41
3261 3971 2.592861 GACATGGAGGATGCGCCC 60.593 66.667 4.18 0.00 37.37 6.13
3275 3985 4.218686 GCCCGGGCCACCCAATAT 62.219 66.667 36.64 0.00 45.83 1.28
3276 3986 2.606449 CCCGGGCCACCCAATATT 59.394 61.111 8.08 0.00 45.83 1.28
3277 3987 1.075600 CCCGGGCCACCCAATATTT 60.076 57.895 8.08 0.00 45.83 1.40
3278 3988 1.398958 CCCGGGCCACCCAATATTTG 61.399 60.000 8.08 0.00 45.83 2.32
3294 4004 5.983333 ATATTTGGGCTAGATATGAGGGG 57.017 43.478 0.00 0.00 0.00 4.79
3295 4005 1.362224 TTGGGCTAGATATGAGGGGC 58.638 55.000 0.00 0.00 0.00 5.80
3296 4006 0.904865 TGGGCTAGATATGAGGGGCG 60.905 60.000 0.00 0.00 0.00 6.13
3302 4012 2.607750 ATATGAGGGGCGCCGGAT 60.608 61.111 22.54 8.61 0.00 4.18
3324 4456 3.972276 CGGGCGTTTGGTTGGTGG 61.972 66.667 0.00 0.00 0.00 4.61
3331 4463 0.688087 GTTTGGTTGGTGGGGTGGAA 60.688 55.000 0.00 0.00 0.00 3.53
3334 4466 1.364317 TGGTTGGTGGGGTGGAATGA 61.364 55.000 0.00 0.00 0.00 2.57
3340 4472 1.580059 GTGGGGTGGAATGACTAGGA 58.420 55.000 0.00 0.00 0.00 2.94
3367 4547 1.422388 CATGGAGATACGATGTGGCG 58.578 55.000 0.00 0.00 31.59 5.69
3371 4551 1.202371 GGAGATACGATGTGGCGAACA 60.202 52.381 0.00 0.00 44.79 3.18
3382 4562 2.735857 GCGAACACGCCGGTTAGT 60.736 61.111 1.90 0.00 45.62 2.24
3415 4597 1.295423 GGTTTGAGGCGCCTGTCTA 59.705 57.895 38.41 15.38 0.00 2.59
3419 4601 1.605058 TTGAGGCGCCTGTCTAGGTC 61.605 60.000 38.41 17.98 46.41 3.85
3420 4602 1.755008 GAGGCGCCTGTCTAGGTCT 60.755 63.158 38.41 5.11 46.41 3.85
3470 4652 1.984026 GTCCGGACGTAAAGGGGGA 60.984 63.158 20.85 0.00 0.00 4.81
3473 4655 1.122227 CCGGACGTAAAGGGGGATTA 58.878 55.000 0.00 0.00 0.00 1.75
3474 4656 1.069668 CCGGACGTAAAGGGGGATTAG 59.930 57.143 0.00 0.00 0.00 1.73
3483 4665 4.271016 GGGGATTAGGGCGCCCAG 62.271 72.222 45.13 0.00 43.89 4.45
3497 4679 1.365633 CCCAGCCGTAGATGCTCTC 59.634 63.158 0.00 0.00 36.81 3.20
3498 4680 1.007964 CCAGCCGTAGATGCTCTCG 60.008 63.158 0.00 0.00 36.81 4.04
3513 4695 2.289506 GCTCTCGGTACTCCCTTTGTTT 60.290 50.000 0.00 0.00 0.00 2.83
3514 4696 3.806157 GCTCTCGGTACTCCCTTTGTTTT 60.806 47.826 0.00 0.00 0.00 2.43
3516 4698 4.383173 TCTCGGTACTCCCTTTGTTTTTC 58.617 43.478 0.00 0.00 0.00 2.29
3517 4699 4.102054 TCTCGGTACTCCCTTTGTTTTTCT 59.898 41.667 0.00 0.00 0.00 2.52
3521 4703 7.678837 TCGGTACTCCCTTTGTTTTTCTATAA 58.321 34.615 0.00 0.00 0.00 0.98
3523 4705 8.953313 CGGTACTCCCTTTGTTTTTCTATAAAT 58.047 33.333 0.00 0.00 0.00 1.40
3572 4754 9.709495 TTCACATTTCCTATTCCTTTTGATTTG 57.291 29.630 0.00 0.00 0.00 2.32
3573 4755 9.087871 TCACATTTCCTATTCCTTTTGATTTGA 57.912 29.630 0.00 0.00 0.00 2.69
3574 4756 9.709495 CACATTTCCTATTCCTTTTGATTTGAA 57.291 29.630 0.00 0.00 0.00 2.69
3587 4769 9.419737 CCTTTTGATTTGAAAATTGTGTAAACG 57.580 29.630 0.00 0.00 0.00 3.60
3588 4770 9.965748 CTTTTGATTTGAAAATTGTGTAAACGT 57.034 25.926 0.00 0.00 0.00 3.99
3592 4774 9.746711 TGATTTGAAAATTGTGTAAACGTTTTG 57.253 25.926 20.19 0.00 0.00 2.44
3593 4775 7.994851 TTTGAAAATTGTGTAAACGTTTTGC 57.005 28.000 20.19 12.93 0.00 3.68
3594 4776 6.706055 TGAAAATTGTGTAAACGTTTTGCA 57.294 29.167 20.19 15.35 0.00 4.08
3595 4777 6.526222 TGAAAATTGTGTAAACGTTTTGCAC 58.474 32.000 27.10 27.10 0.00 4.57
3596 4778 6.145534 TGAAAATTGTGTAAACGTTTTGCACA 59.854 30.769 30.04 30.04 35.02 4.57
3597 4779 5.694674 AATTGTGTAAACGTTTTGCACAG 57.305 34.783 30.86 0.00 36.74 3.66
3598 4780 3.138205 TGTGTAAACGTTTTGCACAGG 57.862 42.857 30.04 0.00 33.32 4.00
3599 4781 2.747989 TGTGTAAACGTTTTGCACAGGA 59.252 40.909 30.04 17.77 33.32 3.86
3600 4782 3.103007 GTGTAAACGTTTTGCACAGGAC 58.897 45.455 28.03 16.81 0.00 3.85
3601 4783 2.223066 TGTAAACGTTTTGCACAGGACG 60.223 45.455 20.19 8.29 41.00 4.79
3602 4784 4.211986 ACGTTTTGCACAGGACGT 57.788 50.000 9.36 9.36 43.12 4.34
3603 4785 1.654317 AACGTTTTGCACAGGACGTA 58.346 45.000 13.90 0.00 46.66 3.57
3604 4786 1.873698 ACGTTTTGCACAGGACGTAT 58.126 45.000 12.46 0.00 45.68 3.06
3605 4787 3.029320 ACGTTTTGCACAGGACGTATA 57.971 42.857 12.46 0.00 45.68 1.47
3606 4788 3.391965 ACGTTTTGCACAGGACGTATAA 58.608 40.909 12.46 0.00 45.68 0.98
3607 4789 3.808726 ACGTTTTGCACAGGACGTATAAA 59.191 39.130 12.46 0.00 45.68 1.40
3608 4790 4.084223 ACGTTTTGCACAGGACGTATAAAG 60.084 41.667 12.46 0.00 45.68 1.85
3609 4791 4.668177 CGTTTTGCACAGGACGTATAAAGG 60.668 45.833 0.00 0.00 0.00 3.11
3610 4792 2.018542 TGCACAGGACGTATAAAGGC 57.981 50.000 0.00 0.00 0.00 4.35
3611 4793 1.553248 TGCACAGGACGTATAAAGGCT 59.447 47.619 0.00 0.00 0.00 4.58
3612 4794 1.933853 GCACAGGACGTATAAAGGCTG 59.066 52.381 0.00 0.00 0.00 4.85
3641 4823 2.227388 GAGTGGTCCTCTGCATTTTGTG 59.773 50.000 0.00 0.00 37.22 3.33
3642 4824 1.956477 GTGGTCCTCTGCATTTTGTGT 59.044 47.619 0.00 0.00 0.00 3.72
3648 4830 3.318839 TCCTCTGCATTTTGTGTCTTTGG 59.681 43.478 0.00 0.00 0.00 3.28
3649 4831 3.318839 CCTCTGCATTTTGTGTCTTTGGA 59.681 43.478 0.00 0.00 0.00 3.53
3650 4832 4.543692 CTCTGCATTTTGTGTCTTTGGAG 58.456 43.478 0.00 0.00 0.00 3.86
3651 4833 3.054878 CTGCATTTTGTGTCTTTGGAGC 58.945 45.455 0.00 0.00 0.00 4.70
3652 4834 2.053627 GCATTTTGTGTCTTTGGAGCG 58.946 47.619 0.00 0.00 0.00 5.03
3653 4835 2.287547 GCATTTTGTGTCTTTGGAGCGA 60.288 45.455 0.00 0.00 0.00 4.93
3654 4836 3.300009 CATTTTGTGTCTTTGGAGCGAC 58.700 45.455 0.00 0.00 0.00 5.19
3656 4838 2.325583 TTGTGTCTTTGGAGCGACTT 57.674 45.000 0.00 0.00 0.00 3.01
3657 4839 2.325583 TGTGTCTTTGGAGCGACTTT 57.674 45.000 0.00 0.00 0.00 2.66
3658 4840 2.639065 TGTGTCTTTGGAGCGACTTTT 58.361 42.857 0.00 0.00 0.00 2.27
3659 4841 2.612212 TGTGTCTTTGGAGCGACTTTTC 59.388 45.455 0.00 0.00 0.00 2.29
3660 4842 2.612212 GTGTCTTTGGAGCGACTTTTCA 59.388 45.455 0.00 0.00 0.00 2.69
3661 4843 2.872245 TGTCTTTGGAGCGACTTTTCAG 59.128 45.455 0.00 0.00 0.00 3.02
3662 4844 2.872858 GTCTTTGGAGCGACTTTTCAGT 59.127 45.455 0.00 0.00 35.17 3.41
3663 4845 4.056050 GTCTTTGGAGCGACTTTTCAGTA 58.944 43.478 0.00 0.00 31.22 2.74
3664 4846 4.691216 GTCTTTGGAGCGACTTTTCAGTAT 59.309 41.667 0.00 0.00 31.22 2.12
3665 4847 5.179555 GTCTTTGGAGCGACTTTTCAGTATT 59.820 40.000 0.00 0.00 31.22 1.89
3666 4848 5.408604 TCTTTGGAGCGACTTTTCAGTATTC 59.591 40.000 0.00 0.00 31.22 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.566724 TCATGGCCAAAATGTTTCCTCC 59.433 45.455 10.96 0.00 0.00 4.30
133 134 1.891150 CTGCTCCCAGTCTGCATTTTT 59.109 47.619 0.00 0.00 36.07 1.94
163 164 1.615392 GCTTCCATGTTTGCAGAGGTT 59.385 47.619 0.00 0.00 0.00 3.50
227 229 6.658816 TCAACAGTGACCTATAATTGCATGTT 59.341 34.615 0.00 0.00 0.00 2.71
228 230 6.179756 TCAACAGTGACCTATAATTGCATGT 58.820 36.000 0.00 0.00 0.00 3.21
242 244 1.949525 AGCATGGTGTTCAACAGTGAC 59.050 47.619 0.00 0.00 31.90 3.67
244 246 4.771590 AATAGCATGGTGTTCAACAGTG 57.228 40.909 7.89 0.00 0.00 3.66
277 279 5.034554 GTGCAGACGAAATTCAAGAATCA 57.965 39.130 0.00 0.00 0.00 2.57
316 318 5.207768 CACAAGATCACAAACTGTTAGTGC 58.792 41.667 0.00 0.00 33.44 4.40
346 352 2.546789 ACTTGATCGGTGAAAACGAACC 59.453 45.455 0.00 0.00 44.20 3.62
359 365 3.624861 AGGCAATGCTTCTAACTTGATCG 59.375 43.478 4.82 0.00 0.00 3.69
492 498 5.765677 CGACTATGTCTCCCAAATCTCTCTA 59.234 44.000 0.00 0.00 0.00 2.43
498 534 2.128035 CGCGACTATGTCTCCCAAATC 58.872 52.381 0.00 0.00 0.00 2.17
499 535 1.806623 GCGCGACTATGTCTCCCAAAT 60.807 52.381 12.10 0.00 0.00 2.32
597 633 2.102394 CTGAATCAGCAGCGATGCGG 62.102 60.000 21.29 20.56 40.27 5.69
658 699 2.746277 GGAACTGTGGCGGCGATT 60.746 61.111 12.98 0.00 0.00 3.34
659 700 3.665675 GAGGAACTGTGGCGGCGAT 62.666 63.158 12.98 0.00 41.55 4.58
700 741 3.695825 GTGGGAGGGGGAGGAGGA 61.696 72.222 0.00 0.00 0.00 3.71
701 742 4.825679 GGTGGGAGGGGGAGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
702 743 4.825679 GGGTGGGAGGGGGAGGAG 62.826 77.778 0.00 0.00 0.00 3.69
732 773 2.187946 CCTGGAGCGGCGATCTTT 59.812 61.111 25.16 0.00 0.00 2.52
744 785 4.779733 GGAGTCGAGGGCCCTGGA 62.780 72.222 34.59 32.57 0.00 3.86
749 790 4.083862 GTGGTGGAGTCGAGGGCC 62.084 72.222 0.00 0.00 0.00 5.80
778 832 2.622436 GGTGAGGACAGATTAGCACAC 58.378 52.381 0.00 0.00 0.00 3.82
779 833 1.204704 CGGTGAGGACAGATTAGCACA 59.795 52.381 0.00 0.00 0.00 4.57
780 834 1.927895 CGGTGAGGACAGATTAGCAC 58.072 55.000 0.00 0.00 0.00 4.40
781 835 0.175760 GCGGTGAGGACAGATTAGCA 59.824 55.000 0.00 0.00 0.00 3.49
783 837 2.271800 GTTGCGGTGAGGACAGATTAG 58.728 52.381 0.00 0.00 0.00 1.73
784 838 1.403647 CGTTGCGGTGAGGACAGATTA 60.404 52.381 0.00 0.00 0.00 1.75
785 839 0.670546 CGTTGCGGTGAGGACAGATT 60.671 55.000 0.00 0.00 0.00 2.40
786 840 1.079819 CGTTGCGGTGAGGACAGAT 60.080 57.895 0.00 0.00 0.00 2.90
788 842 0.670546 ATTCGTTGCGGTGAGGACAG 60.671 55.000 0.00 0.00 0.00 3.51
789 843 0.250124 AATTCGTTGCGGTGAGGACA 60.250 50.000 0.00 0.00 0.00 4.02
790 844 0.872388 AAATTCGTTGCGGTGAGGAC 59.128 50.000 0.00 0.00 0.00 3.85
791 845 0.871722 CAAATTCGTTGCGGTGAGGA 59.128 50.000 0.00 0.00 0.00 3.71
792 846 3.383026 CAAATTCGTTGCGGTGAGG 57.617 52.632 0.00 0.00 0.00 3.86
841 918 3.127721 GTCAGATAGCTGGGCTTCAAAAC 59.872 47.826 8.37 0.00 42.53 2.43
862 939 2.159282 CGGCCTGTTACTATTGACGAGT 60.159 50.000 0.00 0.00 0.00 4.18
866 943 3.063588 GCTTTCGGCCTGTTACTATTGAC 59.936 47.826 0.00 0.00 34.27 3.18
918 995 2.031012 CCTGACCGTTGCAGCAGA 59.969 61.111 0.24 0.00 32.06 4.26
920 997 2.186160 CAACCTGACCGTTGCAGCA 61.186 57.895 0.24 0.00 36.96 4.41
921 998 1.724582 AACAACCTGACCGTTGCAGC 61.725 55.000 1.51 0.00 45.75 5.25
922 999 0.029300 CAACAACCTGACCGTTGCAG 59.971 55.000 1.51 0.00 45.75 4.41
923 1000 0.678366 ACAACAACCTGACCGTTGCA 60.678 50.000 0.00 0.00 45.75 4.08
924 1001 0.454196 AACAACAACCTGACCGTTGC 59.546 50.000 0.00 0.00 45.75 4.17
925 1002 2.014128 AGAACAACAACCTGACCGTTG 58.986 47.619 0.00 0.00 46.94 4.10
927 1004 1.485066 AGAGAACAACAACCTGACCGT 59.515 47.619 0.00 0.00 0.00 4.83
933 1010 7.228706 ACGATGATAAAAAGAGAACAACAACCT 59.771 33.333 0.00 0.00 0.00 3.50
935 1012 8.283291 AGACGATGATAAAAAGAGAACAACAAC 58.717 33.333 0.00 0.00 0.00 3.32
936 1013 8.378172 AGACGATGATAAAAAGAGAACAACAA 57.622 30.769 0.00 0.00 0.00 2.83
937 1014 7.962964 AGACGATGATAAAAAGAGAACAACA 57.037 32.000 0.00 0.00 0.00 3.33
938 1015 7.746475 CCAAGACGATGATAAAAAGAGAACAAC 59.254 37.037 0.00 0.00 0.00 3.32
939 1016 7.659799 TCCAAGACGATGATAAAAAGAGAACAA 59.340 33.333 0.00 0.00 0.00 2.83
940 1017 7.117812 GTCCAAGACGATGATAAAAAGAGAACA 59.882 37.037 0.00 0.00 0.00 3.18
941 1018 7.117812 TGTCCAAGACGATGATAAAAAGAGAAC 59.882 37.037 0.00 0.00 34.95 3.01
942 1019 7.158697 TGTCCAAGACGATGATAAAAAGAGAA 58.841 34.615 0.00 0.00 34.95 2.87
943 1020 6.697395 TGTCCAAGACGATGATAAAAAGAGA 58.303 36.000 0.00 0.00 34.95 3.10
944 1021 6.968131 TGTCCAAGACGATGATAAAAAGAG 57.032 37.500 0.00 0.00 34.95 2.85
945 1022 6.371548 CCTTGTCCAAGACGATGATAAAAAGA 59.628 38.462 8.59 0.00 40.79 2.52
946 1023 6.546395 CCTTGTCCAAGACGATGATAAAAAG 58.454 40.000 8.59 0.00 40.79 2.27
947 1024 5.106317 GCCTTGTCCAAGACGATGATAAAAA 60.106 40.000 8.59 0.00 40.79 1.94
953 1030 0.684535 TGCCTTGTCCAAGACGATGA 59.315 50.000 8.59 0.00 40.79 2.92
962 1039 0.393402 CTATGCTGCTGCCTTGTCCA 60.393 55.000 13.47 0.00 38.71 4.02
973 1050 0.035881 TATGGAGCCTGCTATGCTGC 59.964 55.000 7.13 7.13 46.14 5.25
977 1054 0.689055 TGCCTATGGAGCCTGCTATG 59.311 55.000 0.00 0.00 0.00 2.23
978 1055 1.350351 CTTGCCTATGGAGCCTGCTAT 59.650 52.381 0.00 0.00 0.00 2.97
979 1056 0.761187 CTTGCCTATGGAGCCTGCTA 59.239 55.000 0.00 0.00 0.00 3.49
980 1057 1.530771 CTTGCCTATGGAGCCTGCT 59.469 57.895 0.00 0.00 0.00 4.24
1012 1097 3.008485 AGGAACTGAACTGGGAGATGAAC 59.992 47.826 0.00 0.00 37.18 3.18
1029 1114 8.235359 ACAACCTAGATAGTATACACAGGAAC 57.765 38.462 5.50 0.00 0.00 3.62
1032 1117 8.915036 AGAAACAACCTAGATAGTATACACAGG 58.085 37.037 5.50 6.23 0.00 4.00
1037 1122 9.911138 GCCTTAGAAACAACCTAGATAGTATAC 57.089 37.037 0.00 0.00 0.00 1.47
1039 1124 7.790314 AGGCCTTAGAAACAACCTAGATAGTAT 59.210 37.037 0.00 0.00 0.00 2.12
1040 1125 7.130775 AGGCCTTAGAAACAACCTAGATAGTA 58.869 38.462 0.00 0.00 0.00 1.82
1041 1126 5.965091 AGGCCTTAGAAACAACCTAGATAGT 59.035 40.000 0.00 0.00 0.00 2.12
1042 1127 6.487299 AGGCCTTAGAAACAACCTAGATAG 57.513 41.667 0.00 0.00 0.00 2.08
1043 1128 6.886178 AAGGCCTTAGAAACAACCTAGATA 57.114 37.500 18.87 0.00 0.00 1.98
1044 1129 5.780958 AAGGCCTTAGAAACAACCTAGAT 57.219 39.130 18.87 0.00 0.00 1.98
1045 1130 5.578157 AAAGGCCTTAGAAACAACCTAGA 57.422 39.130 20.84 0.00 0.00 2.43
1047 1132 7.726738 ACAATAAAAGGCCTTAGAAACAACCTA 59.273 33.333 20.84 0.00 0.00 3.08
1051 1136 7.589958 TCACAATAAAAGGCCTTAGAAACAA 57.410 32.000 20.84 0.00 0.00 2.83
1053 1138 8.088365 ACAATCACAATAAAAGGCCTTAGAAAC 58.912 33.333 20.84 0.00 0.00 2.78
1055 1140 7.775053 ACAATCACAATAAAAGGCCTTAGAA 57.225 32.000 20.84 7.67 0.00 2.10
1056 1141 7.775053 AACAATCACAATAAAAGGCCTTAGA 57.225 32.000 20.84 10.31 0.00 2.10
1057 1142 8.306761 AGAAACAATCACAATAAAAGGCCTTAG 58.693 33.333 20.84 9.20 0.00 2.18
1058 1143 8.189119 AGAAACAATCACAATAAAAGGCCTTA 57.811 30.769 20.84 3.94 0.00 2.69
1059 1144 7.066307 AGAAACAATCACAATAAAAGGCCTT 57.934 32.000 13.78 13.78 0.00 4.35
1060 1145 6.670695 AGAAACAATCACAATAAAAGGCCT 57.329 33.333 0.00 0.00 0.00 5.19
1061 1146 7.545615 CCTTAGAAACAATCACAATAAAAGGCC 59.454 37.037 0.00 0.00 0.00 5.19
1069 1154 8.352942 GTGAAAGACCTTAGAAACAATCACAAT 58.647 33.333 0.00 0.00 34.95 2.71
1070 1155 7.556275 AGTGAAAGACCTTAGAAACAATCACAA 59.444 33.333 0.00 0.00 36.74 3.33
1071 1156 7.012327 CAGTGAAAGACCTTAGAAACAATCACA 59.988 37.037 0.00 0.00 36.74 3.58
1072 1157 7.355778 CAGTGAAAGACCTTAGAAACAATCAC 58.644 38.462 0.00 0.00 35.03 3.06
1073 1158 6.017109 GCAGTGAAAGACCTTAGAAACAATCA 60.017 38.462 0.00 0.00 0.00 2.57
1074 1159 6.205658 AGCAGTGAAAGACCTTAGAAACAATC 59.794 38.462 0.00 0.00 0.00 2.67
1075 1160 6.064717 AGCAGTGAAAGACCTTAGAAACAAT 58.935 36.000 0.00 0.00 0.00 2.71
1076 1161 5.437060 AGCAGTGAAAGACCTTAGAAACAA 58.563 37.500 0.00 0.00 0.00 2.83
1077 1162 5.036117 AGCAGTGAAAGACCTTAGAAACA 57.964 39.130 0.00 0.00 0.00 2.83
1078 1163 6.183360 ACAAAGCAGTGAAAGACCTTAGAAAC 60.183 38.462 0.00 0.00 0.00 2.78
1079 1164 5.885912 ACAAAGCAGTGAAAGACCTTAGAAA 59.114 36.000 0.00 0.00 0.00 2.52
1080 1165 5.437060 ACAAAGCAGTGAAAGACCTTAGAA 58.563 37.500 0.00 0.00 0.00 2.10
1081 1166 5.036117 ACAAAGCAGTGAAAGACCTTAGA 57.964 39.130 0.00 0.00 0.00 2.10
1082 1167 6.861065 TTACAAAGCAGTGAAAGACCTTAG 57.139 37.500 0.00 0.00 0.00 2.18
1083 1168 7.259290 CTTTACAAAGCAGTGAAAGACCTTA 57.741 36.000 0.00 0.00 30.29 2.69
1084 1169 6.136541 CTTTACAAAGCAGTGAAAGACCTT 57.863 37.500 0.00 0.00 30.29 3.50
1097 1182 6.471519 GTGATCATCAATCAGCTTTACAAAGC 59.528 38.462 17.04 17.04 45.06 3.51
1109 1194 5.120054 AGGTTCATGGTGATCATCAATCA 57.880 39.130 13.76 0.00 42.21 2.57
1110 1195 5.359009 ACAAGGTTCATGGTGATCATCAATC 59.641 40.000 13.76 0.00 32.92 2.67
1112 1197 4.665451 ACAAGGTTCATGGTGATCATCAA 58.335 39.130 13.76 0.00 32.92 2.57
1113 1198 4.305539 ACAAGGTTCATGGTGATCATCA 57.694 40.909 11.92 11.92 32.92 3.07
1115 1200 4.191544 CGTACAAGGTTCATGGTGATCAT 58.808 43.478 0.00 0.00 36.31 2.45
1116 1201 3.007506 ACGTACAAGGTTCATGGTGATCA 59.992 43.478 0.00 0.00 0.00 2.92
1117 1202 3.596214 ACGTACAAGGTTCATGGTGATC 58.404 45.455 0.00 0.00 0.00 2.92
1121 1501 3.243267 GCAAAACGTACAAGGTTCATGGT 60.243 43.478 0.00 0.00 0.00 3.55
1122 1502 3.243234 TGCAAAACGTACAAGGTTCATGG 60.243 43.478 0.00 0.00 0.00 3.66
1174 1554 3.565764 TGCTCATCCTAAACCATGGAG 57.434 47.619 21.47 5.19 35.63 3.86
1181 1561 8.897752 ACTTTTATCATCTTGCTCATCCTAAAC 58.102 33.333 0.00 0.00 0.00 2.01
1282 1662 6.459670 TTCACATCATTACTAACCTCGCTA 57.540 37.500 0.00 0.00 0.00 4.26
1296 1676 4.455533 ACGTGCACAGTTTATTCACATCAT 59.544 37.500 18.64 0.00 0.00 2.45
1310 1690 2.263077 GAGTATTCCTCACGTGCACAG 58.737 52.381 18.64 12.16 40.17 3.66
1337 1717 3.064207 TCAGGTCAACAAGTAATGCGAC 58.936 45.455 0.00 0.00 35.20 5.19
1338 1718 3.394674 TCAGGTCAACAAGTAATGCGA 57.605 42.857 0.00 0.00 0.00 5.10
1339 1719 3.436704 ACATCAGGTCAACAAGTAATGCG 59.563 43.478 0.00 0.00 0.00 4.73
1480 1868 1.334994 TTTGCGCACGTGCATATTTG 58.665 45.000 37.03 21.91 45.78 2.32
1536 1924 6.820656 CCTCTGTACAACATAAGCAGAATCTT 59.179 38.462 0.00 0.00 36.02 2.40
1635 2038 4.083217 CGGAGTGGCAGTACAGATAGATAC 60.083 50.000 5.21 0.00 0.00 2.24
1652 2055 2.363788 TCTCAAATTCGTCCGGAGTG 57.636 50.000 3.06 0.00 0.00 3.51
1676 2079 7.929941 TTACAGACAACACCAATATATGCAA 57.070 32.000 0.00 0.00 0.00 4.08
1678 2081 7.067008 AGGTTTACAGACAACACCAATATATGC 59.933 37.037 0.00 0.00 0.00 3.14
1680 2083 9.528489 AAAGGTTTACAGACAACACCAATATAT 57.472 29.630 0.00 0.00 0.00 0.86
1682 2085 7.504238 TCAAAGGTTTACAGACAACACCAATAT 59.496 33.333 0.00 0.00 0.00 1.28
1687 2171 4.495184 CGTCAAAGGTTTACAGACAACACC 60.495 45.833 0.00 0.00 0.00 4.16
1710 2194 3.817647 CTGGAGCTAATGCCTTAATGGAC 59.182 47.826 0.00 0.00 40.80 4.02
1711 2195 3.748668 GCTGGAGCTAATGCCTTAATGGA 60.749 47.826 0.00 0.00 40.80 3.41
1729 2275 1.411977 CTCTGGACCTATGACTGCTGG 59.588 57.143 0.00 0.00 0.00 4.85
1760 2306 4.282449 TCAGTATGAACCTGAGAACCGAAA 59.718 41.667 0.00 0.00 45.97 3.46
1761 2307 3.830178 TCAGTATGAACCTGAGAACCGAA 59.170 43.478 0.00 0.00 45.97 4.30
1814 2360 5.534278 TCCAAGTACATCAGCAATGACAAAA 59.466 36.000 6.14 0.00 38.83 2.44
1830 2376 7.907214 ACAAGACAATACTGATTCCAAGTAC 57.093 36.000 0.00 0.00 0.00 2.73
1861 2407 7.757941 TCCAAGTACATCATCAATGACAAAA 57.242 32.000 0.00 0.00 40.03 2.44
1863 2409 7.611079 TGATTCCAAGTACATCATCAATGACAA 59.389 33.333 0.00 0.00 40.03 3.18
1867 2413 7.563888 ACTGATTCCAAGTACATCATCAATG 57.436 36.000 0.00 0.00 41.48 2.82
1872 2418 8.489489 AGACAATACTGATTCCAAGTACATCAT 58.511 33.333 0.00 0.00 0.00 2.45
1877 2423 7.907214 ACAAGACAATACTGATTCCAAGTAC 57.093 36.000 0.00 0.00 0.00 2.73
1905 2496 5.706833 TGCATATCAGCAATAACATACAGGG 59.293 40.000 0.00 0.00 42.46 4.45
1946 2537 0.248498 TACAGCGTCGCATCACTAGC 60.248 55.000 21.09 0.00 0.00 3.42
2026 2617 2.288152 CCGCAGTTTTATGCAGGTGTTT 60.288 45.455 0.00 0.00 46.87 2.83
2080 2671 2.202716 AGCGACATGAGAGCAGCG 60.203 61.111 0.00 0.00 0.00 5.18
2135 2726 1.082561 GTGATGCGCACACACACAG 60.083 57.895 30.97 0.00 46.91 3.66
2148 2739 1.695114 TATGGGCGGAGGTGGTGATG 61.695 60.000 0.00 0.00 0.00 3.07
2149 2740 0.768221 ATATGGGCGGAGGTGGTGAT 60.768 55.000 0.00 0.00 0.00 3.06
2161 2752 3.944015 CAGCTAGGCAGAATTATATGGGC 59.056 47.826 0.00 0.00 0.00 5.36
2163 2754 5.181748 GGACAGCTAGGCAGAATTATATGG 58.818 45.833 0.00 0.00 0.00 2.74
2165 2756 6.013032 ACATGGACAGCTAGGCAGAATTATAT 60.013 38.462 0.00 0.00 0.00 0.86
2171 2762 1.279496 ACATGGACAGCTAGGCAGAA 58.721 50.000 0.00 0.00 0.00 3.02
2189 2780 5.333111 CGTGCTTCTTTGTACTCCTGTAAAC 60.333 44.000 0.00 0.00 0.00 2.01
2193 2784 2.102588 ACGTGCTTCTTTGTACTCCTGT 59.897 45.455 0.00 0.00 0.00 4.00
2194 2785 2.476619 CACGTGCTTCTTTGTACTCCTG 59.523 50.000 0.82 0.00 0.00 3.86
2249 2840 3.403038 ACTTTCTCCATCTCGGTGTTTG 58.597 45.455 0.00 0.00 35.57 2.93
2283 2874 8.422577 AGAAAAGGCTGAAACATAATTTAGGT 57.577 30.769 0.00 0.00 0.00 3.08
2309 2900 9.862149 AGTTGGAGTTTCCTTCTTTTTATTAGA 57.138 29.630 0.00 0.00 37.46 2.10
2311 2902 9.074576 GGAGTTGGAGTTTCCTTCTTTTTATTA 57.925 33.333 0.00 0.00 37.46 0.98
2312 2903 7.785028 AGGAGTTGGAGTTTCCTTCTTTTTATT 59.215 33.333 0.00 0.00 38.13 1.40
2313 2904 7.298374 AGGAGTTGGAGTTTCCTTCTTTTTAT 58.702 34.615 0.00 0.00 38.13 1.40
2317 2908 4.446455 GGAGGAGTTGGAGTTTCCTTCTTT 60.446 45.833 0.00 0.00 41.32 2.52
2381 2972 7.068593 CCCTTCAATCTAGGCATCAAATGTAAA 59.931 37.037 0.00 0.00 0.00 2.01
2481 3131 2.589014 GACGGCTTGAAGCATTTTCTG 58.411 47.619 19.89 1.93 44.75 3.02
2499 3149 2.744741 GCCTGTTTTTCTCTAGCTGGAC 59.255 50.000 0.00 0.00 0.00 4.02
2615 3271 4.678622 ACAAAACGGGAAATTCAGTGAAC 58.321 39.130 7.96 0.00 0.00 3.18
2654 3311 1.199327 TCTCACAGCTACAGTGTACGC 59.801 52.381 13.61 13.61 38.16 4.42
2688 3353 2.480555 CAAGCTGTAAAGGGCGCG 59.519 61.111 0.00 0.00 0.00 6.86
2720 3385 7.589958 ACCAAGTTACATACATTTTTGGTGA 57.410 32.000 5.29 0.00 43.59 4.02
2721 3386 7.923344 TGAACCAAGTTACATACATTTTTGGTG 59.077 33.333 6.75 0.00 44.24 4.17
2722 3387 8.012957 TGAACCAAGTTACATACATTTTTGGT 57.987 30.769 0.44 0.44 46.25 3.67
2724 3389 9.528018 AACTGAACCAAGTTACATACATTTTTG 57.472 29.630 0.00 0.00 38.62 2.44
2730 3395 9.562408 TGATAAAACTGAACCAAGTTACATACA 57.438 29.630 0.00 0.00 39.48 2.29
2779 3445 9.507329 CATACATAAATTTGGTGATAGCTAGGT 57.493 33.333 0.00 0.00 0.00 3.08
2822 3530 0.034476 CTGAGAGCTCCAGCACAACA 59.966 55.000 10.93 0.00 45.16 3.33
2823 3531 0.319728 TCTGAGAGCTCCAGCACAAC 59.680 55.000 21.00 2.44 45.16 3.32
2824 3532 1.051008 TTCTGAGAGCTCCAGCACAA 58.949 50.000 21.00 11.67 45.16 3.33
2892 3600 9.959721 AGGAACTGTTATACACAAGATTACAAT 57.040 29.630 0.00 0.00 37.18 2.71
2897 3605 9.349713 TGAAAAGGAACTGTTATACACAAGATT 57.650 29.630 0.00 0.00 35.03 2.40
2908 3616 5.105567 TGGTCAGTGAAAAGGAACTGTTA 57.894 39.130 0.00 0.00 43.49 2.41
2917 3625 5.296780 TGCTTCTAACTTGGTCAGTGAAAAG 59.703 40.000 12.97 12.97 35.12 2.27
2928 3636 3.350833 AGAGGCAATGCTTCTAACTTGG 58.649 45.455 18.46 0.00 43.05 3.61
2953 3661 0.250338 GAGAACCGGGCTTGTGAGTT 60.250 55.000 6.32 0.00 0.00 3.01
2954 3662 1.371558 GAGAACCGGGCTTGTGAGT 59.628 57.895 6.32 0.00 0.00 3.41
2955 3663 1.738099 CGAGAACCGGGCTTGTGAG 60.738 63.158 6.32 0.00 33.91 3.51
2956 3664 2.342279 CGAGAACCGGGCTTGTGA 59.658 61.111 6.32 0.00 33.91 3.58
2957 3665 3.423154 GCGAGAACCGGGCTTGTG 61.423 66.667 6.32 0.00 39.04 3.33
2958 3666 2.951475 TTTGCGAGAACCGGGCTTGT 62.951 55.000 6.32 0.00 39.04 3.16
2959 3667 1.791103 TTTTGCGAGAACCGGGCTTG 61.791 55.000 6.32 7.99 39.04 4.01
2960 3668 1.104577 TTTTTGCGAGAACCGGGCTT 61.105 50.000 6.32 0.00 39.04 4.35
2961 3669 1.527380 TTTTTGCGAGAACCGGGCT 60.527 52.632 6.32 1.63 39.04 5.19
2962 3670 3.035727 TTTTTGCGAGAACCGGGC 58.964 55.556 6.32 0.00 39.04 6.13
2980 3688 2.351706 TACCGGGCTTGTGAGTTTTT 57.648 45.000 6.32 0.00 0.00 1.94
2981 3689 2.224670 TGATACCGGGCTTGTGAGTTTT 60.225 45.455 6.32 0.00 0.00 2.43
2982 3690 1.349688 TGATACCGGGCTTGTGAGTTT 59.650 47.619 6.32 0.00 0.00 2.66
2983 3691 0.981183 TGATACCGGGCTTGTGAGTT 59.019 50.000 6.32 0.00 0.00 3.01
2998 3706 7.914859 AGTGCCATCTGATATTCTGATTGATA 58.085 34.615 0.00 0.00 33.58 2.15
3047 3756 0.667792 GTCGACAAGGAGCTGGACAC 60.668 60.000 11.55 0.00 0.00 3.67
3050 3759 1.863662 GACGTCGACAAGGAGCTGGA 61.864 60.000 17.16 0.00 0.00 3.86
3118 3827 2.107726 TCTTCCCTCTCCGATTCCGATA 59.892 50.000 0.00 0.00 38.22 2.92
3140 3849 3.707640 CTCTCGCTCCGTCCCCTCT 62.708 68.421 0.00 0.00 0.00 3.69
3144 3853 2.969300 ATCCTCTCTCGCTCCGTCCC 62.969 65.000 0.00 0.00 0.00 4.46
3149 3858 1.739049 CACCATCCTCTCTCGCTCC 59.261 63.158 0.00 0.00 0.00 4.70
3159 3868 1.690845 CCTAGCTCACTCCACCATCCT 60.691 57.143 0.00 0.00 0.00 3.24
3160 3869 0.755686 CCTAGCTCACTCCACCATCC 59.244 60.000 0.00 0.00 0.00 3.51
3161 3870 0.755686 CCCTAGCTCACTCCACCATC 59.244 60.000 0.00 0.00 0.00 3.51
3162 3871 0.043334 ACCCTAGCTCACTCCACCAT 59.957 55.000 0.00 0.00 0.00 3.55
3163 3872 0.178903 AACCCTAGCTCACTCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
3164 3873 0.537653 GAACCCTAGCTCACTCCACC 59.462 60.000 0.00 0.00 0.00 4.61
3165 3874 0.173708 CGAACCCTAGCTCACTCCAC 59.826 60.000 0.00 0.00 0.00 4.02
3166 3875 0.970937 CCGAACCCTAGCTCACTCCA 60.971 60.000 0.00 0.00 0.00 3.86
3167 3876 0.683504 TCCGAACCCTAGCTCACTCC 60.684 60.000 0.00 0.00 0.00 3.85
3168 3877 0.741915 CTCCGAACCCTAGCTCACTC 59.258 60.000 0.00 0.00 0.00 3.51
3169 3878 0.331954 TCTCCGAACCCTAGCTCACT 59.668 55.000 0.00 0.00 0.00 3.41
3170 3879 0.741915 CTCTCCGAACCCTAGCTCAC 59.258 60.000 0.00 0.00 0.00 3.51
3171 3880 0.395862 CCTCTCCGAACCCTAGCTCA 60.396 60.000 0.00 0.00 0.00 4.26
3172 3881 1.110518 CCCTCTCCGAACCCTAGCTC 61.111 65.000 0.00 0.00 0.00 4.09
3178 3887 3.459063 CGTCCCCTCTCCGAACCC 61.459 72.222 0.00 0.00 0.00 4.11
3183 3892 2.797278 CCCAATCGTCCCCTCTCCG 61.797 68.421 0.00 0.00 0.00 4.63
3218 3928 4.388499 GCATCACCGACCCCACGT 62.388 66.667 0.00 0.00 0.00 4.49
3232 3942 2.048023 CCATGTCAACCCAGCGCAT 61.048 57.895 11.47 0.00 0.00 4.73
3235 3945 1.746615 CCTCCATGTCAACCCAGCG 60.747 63.158 0.00 0.00 0.00 5.18
3238 3948 0.034186 GCATCCTCCATGTCAACCCA 60.034 55.000 0.00 0.00 34.56 4.51
3242 3952 1.451927 GGCGCATCCTCCATGTCAA 60.452 57.895 10.83 0.00 34.56 3.18
3270 3980 6.125029 CCCCTCATATCTAGCCCAAATATTG 58.875 44.000 0.00 0.00 0.00 1.90
3271 3981 5.340360 GCCCCTCATATCTAGCCCAAATATT 60.340 44.000 0.00 0.00 0.00 1.28
3272 3982 4.166919 GCCCCTCATATCTAGCCCAAATAT 59.833 45.833 0.00 0.00 0.00 1.28
3273 3983 3.523564 GCCCCTCATATCTAGCCCAAATA 59.476 47.826 0.00 0.00 0.00 1.40
3274 3984 2.310052 GCCCCTCATATCTAGCCCAAAT 59.690 50.000 0.00 0.00 0.00 2.32
3275 3985 1.705186 GCCCCTCATATCTAGCCCAAA 59.295 52.381 0.00 0.00 0.00 3.28
3276 3986 1.362224 GCCCCTCATATCTAGCCCAA 58.638 55.000 0.00 0.00 0.00 4.12
3277 3987 0.904865 CGCCCCTCATATCTAGCCCA 60.905 60.000 0.00 0.00 0.00 5.36
3278 3988 1.901085 CGCCCCTCATATCTAGCCC 59.099 63.158 0.00 0.00 0.00 5.19
3279 3989 1.219393 GCGCCCCTCATATCTAGCC 59.781 63.158 0.00 0.00 0.00 3.93
3280 3990 1.219393 GGCGCCCCTCATATCTAGC 59.781 63.158 18.11 0.00 0.00 3.42
3281 3991 1.513158 CGGCGCCCCTCATATCTAG 59.487 63.158 23.46 0.00 0.00 2.43
3282 3992 1.982395 CCGGCGCCCCTCATATCTA 60.982 63.158 23.46 0.00 0.00 1.98
3283 3993 3.314331 CCGGCGCCCCTCATATCT 61.314 66.667 23.46 0.00 0.00 1.98
3284 3994 1.327690 TATCCGGCGCCCCTCATATC 61.328 60.000 23.46 0.00 0.00 1.63
3285 3995 1.305802 TATCCGGCGCCCCTCATAT 60.306 57.895 23.46 7.90 0.00 1.78
3286 3996 1.982395 CTATCCGGCGCCCCTCATA 60.982 63.158 23.46 10.70 0.00 2.15
3287 3997 3.314331 CTATCCGGCGCCCCTCAT 61.314 66.667 23.46 10.06 0.00 2.90
3302 4012 3.956314 AACCAAACGCCCGGGCTA 61.956 61.111 41.01 0.00 39.32 3.93
3320 4452 0.546598 CCTAGTCATTCCACCCCACC 59.453 60.000 0.00 0.00 0.00 4.61
3322 4454 2.587060 ATCCTAGTCATTCCACCCCA 57.413 50.000 0.00 0.00 0.00 4.96
3324 4456 3.053619 ACCAAATCCTAGTCATTCCACCC 60.054 47.826 0.00 0.00 0.00 4.61
3340 4472 4.103153 ACATCGTATCTCCATGGACCAAAT 59.897 41.667 11.44 4.96 0.00 2.32
3349 4481 1.328279 TCGCCACATCGTATCTCCAT 58.672 50.000 0.00 0.00 0.00 3.41
3350 4482 1.107945 TTCGCCACATCGTATCTCCA 58.892 50.000 0.00 0.00 0.00 3.86
3367 4547 3.866356 GGACTAACCGGCGTGTTC 58.134 61.111 15.24 4.19 0.00 3.18
3379 4559 2.658422 GGTCAAACGCCCGGACTA 59.342 61.111 0.73 0.00 0.00 2.59
3387 4567 1.281656 CCTCAAACCGGTCAAACGC 59.718 57.895 8.04 0.00 0.00 4.84
3457 4639 1.202734 GCCCTAATCCCCCTTTACGTC 60.203 57.143 0.00 0.00 0.00 4.34
3458 4640 0.841961 GCCCTAATCCCCCTTTACGT 59.158 55.000 0.00 0.00 0.00 3.57
3459 4641 0.250166 CGCCCTAATCCCCCTTTACG 60.250 60.000 0.00 0.00 0.00 3.18
3463 4645 3.499029 GGCGCCCTAATCCCCCTT 61.499 66.667 18.11 0.00 0.00 3.95
3467 4649 4.956932 GCTGGGCGCCCTAATCCC 62.957 72.222 43.34 21.72 40.47 3.85
3485 4667 5.924433 AGGGAGTACCGAGAGCATCTACG 62.924 56.522 0.00 0.00 45.80 3.51
3488 4670 0.553819 AGGGAGTACCGAGAGCATCT 59.446 55.000 0.00 0.00 46.96 2.90
3497 4679 7.910441 TTATAGAAAAACAAAGGGAGTACCG 57.090 36.000 0.00 0.00 46.96 4.02
3546 4728 9.709495 CAAATCAAAAGGAATAGGAAATGTGAA 57.291 29.630 0.00 0.00 0.00 3.18
3548 4730 9.709495 TTCAAATCAAAAGGAATAGGAAATGTG 57.291 29.630 0.00 0.00 0.00 3.21
3561 4743 9.419737 CGTTTACACAATTTTCAAATCAAAAGG 57.580 29.630 0.00 0.00 0.00 3.11
3562 4744 9.965748 ACGTTTACACAATTTTCAAATCAAAAG 57.034 25.926 0.00 0.00 0.00 2.27
3568 4750 8.230486 TGCAAAACGTTTACACAATTTTCAAAT 58.770 25.926 15.03 0.00 0.00 2.32
3572 4754 6.526222 TGTGCAAAACGTTTACACAATTTTC 58.474 32.000 31.51 14.91 35.64 2.29
3573 4755 6.401581 CCTGTGCAAAACGTTTACACAATTTT 60.402 34.615 32.19 9.84 37.10 1.82
3574 4756 5.062809 CCTGTGCAAAACGTTTACACAATTT 59.937 36.000 32.19 10.44 37.10 1.82
3576 4758 4.109050 CCTGTGCAAAACGTTTACACAAT 58.891 39.130 32.19 11.66 37.10 2.71
3577 4759 3.190744 TCCTGTGCAAAACGTTTACACAA 59.809 39.130 32.19 23.21 37.10 3.33
3578 4760 2.747989 TCCTGTGCAAAACGTTTACACA 59.252 40.909 31.39 31.39 36.53 3.72
3580 4762 2.223066 CGTCCTGTGCAAAACGTTTACA 60.223 45.455 15.03 13.84 0.00 2.41
3581 4763 2.223089 ACGTCCTGTGCAAAACGTTTAC 60.223 45.455 15.03 9.66 45.21 2.01
3582 4764 2.008329 ACGTCCTGTGCAAAACGTTTA 58.992 42.857 15.03 0.00 45.21 2.01
3583 4765 0.806241 ACGTCCTGTGCAAAACGTTT 59.194 45.000 7.96 7.96 45.21 3.60
3584 4766 1.654317 TACGTCCTGTGCAAAACGTT 58.346 45.000 11.75 0.00 45.21 3.99
3585 4767 4.211986 ACGTCCTGTGCAAAACGT 57.788 50.000 0.82 0.82 42.96 3.99
3586 4768 4.391358 CTTTATACGTCCTGTGCAAAACG 58.609 43.478 0.00 0.00 40.77 3.60
3587 4769 4.719040 CCTTTATACGTCCTGTGCAAAAC 58.281 43.478 0.00 0.00 0.00 2.43
3588 4770 3.189702 GCCTTTATACGTCCTGTGCAAAA 59.810 43.478 0.00 0.00 0.00 2.44
3589 4771 2.745281 GCCTTTATACGTCCTGTGCAAA 59.255 45.455 0.00 0.00 0.00 3.68
3590 4772 2.027561 AGCCTTTATACGTCCTGTGCAA 60.028 45.455 0.00 0.00 0.00 4.08
3591 4773 1.553248 AGCCTTTATACGTCCTGTGCA 59.447 47.619 0.00 0.00 0.00 4.57
3592 4774 1.933853 CAGCCTTTATACGTCCTGTGC 59.066 52.381 0.00 0.00 0.00 4.57
3593 4775 3.187700 GACAGCCTTTATACGTCCTGTG 58.812 50.000 0.00 0.00 34.05 3.66
3594 4776 2.167900 GGACAGCCTTTATACGTCCTGT 59.832 50.000 0.00 0.00 42.37 4.00
3595 4777 2.798499 CGGACAGCCTTTATACGTCCTG 60.798 54.545 0.00 0.00 43.27 3.86
3596 4778 1.407979 CGGACAGCCTTTATACGTCCT 59.592 52.381 0.00 0.00 43.27 3.85
3597 4779 1.849097 CGGACAGCCTTTATACGTCC 58.151 55.000 0.00 0.00 42.25 4.79
3598 4780 1.206523 GCGGACAGCCTTTATACGTC 58.793 55.000 0.00 0.00 40.81 4.34
3599 4781 3.357504 GCGGACAGCCTTTATACGT 57.642 52.632 0.00 0.00 40.81 3.57
3610 4792 2.430921 GACCACTCGTGCGGACAG 60.431 66.667 8.11 6.43 0.00 3.51
3611 4793 3.986006 GGACCACTCGTGCGGACA 61.986 66.667 8.11 0.00 0.00 4.02
3612 4794 3.628280 GAGGACCACTCGTGCGGAC 62.628 68.421 0.00 0.00 37.99 4.79
3641 4823 2.872858 ACTGAAAAGTCGCTCCAAAGAC 59.127 45.455 0.00 0.00 37.63 3.01
3642 4824 3.194005 ACTGAAAAGTCGCTCCAAAGA 57.806 42.857 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.