Multiple sequence alignment - TraesCS4B01G022300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G022300 chr4B 100.000 8261 0 0 1 8261 16064157 16055897 0.000000e+00 15256
1 TraesCS4B01G022300 chr4B 97.661 2309 38 2 3313 5605 17039692 17042000 0.000000e+00 3951
2 TraesCS4B01G022300 chr4B 95.769 2340 67 9 890 3199 17037356 17039693 0.000000e+00 3744
3 TraesCS4B01G022300 chr4B 95.145 1071 44 7 5838 6908 17042486 17043548 0.000000e+00 1683
4 TraesCS4B01G022300 chr4B 91.338 785 48 7 6907 7672 17043693 17044476 0.000000e+00 1055
5 TraesCS4B01G022300 chr4B 98.069 259 3 2 5590 5848 17042197 17042453 4.550000e-122 449
6 TraesCS4B01G022300 chr4B 95.000 160 8 0 727 886 17037010 17037169 1.380000e-62 252
7 TraesCS4B01G022300 chr4B 80.427 281 14 23 7708 7952 17044690 17044965 8.520000e-40 176
8 TraesCS4B01G022300 chr4B 85.802 162 9 7 1 151 17036745 17036903 8.580000e-35 159
9 TraesCS4B01G022300 chr4D 96.485 2105 54 9 3753 5848 8657411 8655318 0.000000e+00 3459
10 TraesCS4B01G022300 chr4D 91.583 1889 82 24 1 1817 8661077 8659194 0.000000e+00 2536
11 TraesCS4B01G022300 chr4D 96.286 1077 40 0 2123 3199 8658740 8657664 0.000000e+00 1768
12 TraesCS4B01G022300 chr4D 95.768 1016 40 3 5838 6852 8655285 8654272 0.000000e+00 1635
13 TraesCS4B01G022300 chr4D 91.457 714 46 3 6909 7608 8654109 8653397 0.000000e+00 966
14 TraesCS4B01G022300 chr4D 95.318 299 12 2 1827 2124 8659141 8658844 2.700000e-129 473
15 TraesCS4B01G022300 chr4D 97.287 258 7 0 3313 3570 8657665 8657408 9.840000e-119 438
16 TraesCS4B01G022300 chr4D 79.597 397 26 28 7708 8064 8652937 8652556 4.990000e-57 233
17 TraesCS4B01G022300 chr4D 83.529 255 26 7 833 1075 390036057 390036307 3.000000e-54 224
18 TraesCS4B01G022300 chr4D 92.857 126 7 2 3192 3315 367720763 367720888 1.830000e-41 182
19 TraesCS4B01G022300 chr4A 95.492 1819 51 5 4037 5848 594682915 594684709 0.000000e+00 2876
20 TraesCS4B01G022300 chr4A 95.362 1380 56 3 1827 3199 594680895 594682273 0.000000e+00 2187
21 TraesCS4B01G022300 chr4A 95.108 1022 40 6 5835 6852 594684739 594685754 0.000000e+00 1602
22 TraesCS4B01G022300 chr4A 91.304 1035 57 13 809 1814 594679809 594680839 0.000000e+00 1382
23 TraesCS4B01G022300 chr4A 92.177 882 27 7 1 840 594678765 594679646 0.000000e+00 1208
24 TraesCS4B01G022300 chr4A 92.532 616 37 4 6907 7515 594685866 594686479 0.000000e+00 874
25 TraesCS4B01G022300 chr4A 96.864 287 9 0 3753 4039 594682526 594682812 1.610000e-131 481
26 TraesCS4B01G022300 chr4A 95.736 258 11 0 3313 3570 594682272 594682529 4.610000e-112 416
27 TraesCS4B01G022300 chr4A 80.519 385 25 26 7710 8060 594700724 594701092 4.950000e-62 250
28 TraesCS4B01G022300 chr4A 85.520 221 15 6 7708 7928 594687303 594687506 1.810000e-51 215
29 TraesCS4B01G022300 chr4A 85.577 104 11 1 7413 7512 594700106 594700209 1.130000e-18 106
30 TraesCS4B01G022300 chr3B 85.366 369 35 7 833 1184 268961272 268961638 1.690000e-96 364
31 TraesCS4B01G022300 chr3B 92.105 190 15 0 3567 3756 764767597 764767786 1.370000e-67 268
32 TraesCS4B01G022300 chr3B 84.337 166 14 3 3567 3720 43319071 43319236 1.440000e-32 152
33 TraesCS4B01G022300 chr3B 81.865 193 19 5 3567 3747 763602901 763602713 1.860000e-31 148
34 TraesCS4B01G022300 chr1B 84.324 370 37 8 833 1184 299264606 299264240 7.940000e-90 342
35 TraesCS4B01G022300 chr5D 81.818 352 47 10 834 1184 440910991 440911326 6.310000e-71 279
36 TraesCS4B01G022300 chr5D 95.000 120 5 1 3196 3314 118840449 118840568 3.940000e-43 187
37 TraesCS4B01G022300 chr7D 92.632 190 14 0 3567 3756 390686590 390686401 2.940000e-69 274
38 TraesCS4B01G022300 chr7A 92.593 189 13 1 3566 3754 30660908 30660721 3.800000e-68 270
39 TraesCS4B01G022300 chr5B 95.238 168 8 0 3589 3756 634999011 634998844 4.920000e-67 267
40 TraesCS4B01G022300 chr5B 82.935 293 50 0 5870 6162 10446112 10445820 1.770000e-66 265
41 TraesCS4B01G022300 chr5B 91.623 191 15 1 3566 3756 270633570 270633759 6.360000e-66 263
42 TraesCS4B01G022300 chr1D 92.063 189 15 0 3567 3755 54972392 54972580 4.920000e-67 267
43 TraesCS4B01G022300 chr3D 91.579 190 15 1 3566 3755 395903899 395904087 2.290000e-65 261
44 TraesCS4B01G022300 chr3D 91.803 183 15 0 3591 3773 317203560 317203378 1.060000e-63 255
45 TraesCS4B01G022300 chr6A 90.860 186 15 2 1000 1184 432569750 432569934 1.780000e-61 248
46 TraesCS4B01G022300 chr6A 95.833 120 4 1 3197 3315 147303778 147303659 8.460000e-45 193
47 TraesCS4B01G022300 chr6A 90.580 138 7 6 3194 3327 8390570 8390435 2.370000e-40 178
48 TraesCS4B01G022300 chr6B 96.581 117 4 0 3198 3314 683214230 683214114 2.350000e-45 195
49 TraesCS4B01G022300 chr2B 96.581 117 4 0 3198 3314 49975893 49975777 2.350000e-45 195
50 TraesCS4B01G022300 chr2B 95.833 120 5 0 3195 3314 50150301 50150420 2.350000e-45 195
51 TraesCS4B01G022300 chr2D 94.958 119 5 1 3197 3314 12692358 12692240 1.420000e-42 185
52 TraesCS4B01G022300 chr2A 94.958 119 5 1 3197 3314 78845571 78845689 1.420000e-42 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G022300 chr4B 16055897 16064157 8260 True 15256.000 15256 100.000000 1 8261 1 chr4B.!!$R1 8260
1 TraesCS4B01G022300 chr4B 17036745 17044965 8220 False 1433.625 3951 92.401375 1 7952 8 chr4B.!!$F1 7951
2 TraesCS4B01G022300 chr4D 8652556 8661077 8521 True 1438.500 3459 92.972625 1 8064 8 chr4D.!!$R1 8063
3 TraesCS4B01G022300 chr4A 594678765 594687506 8741 False 1249.000 2876 93.343889 1 7928 9 chr4A.!!$F1 7927

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 890 2.685897 TGACTGTTTTTAGGTGGTGCAC 59.314 45.455 8.80 8.80 0.00 4.57 F
1657 2147 2.522680 GGGCAATCTGGGGGATGC 60.523 66.667 0.00 0.00 34.45 3.91 F
2970 3616 0.680061 GGAGCGGGGTTCCACTATAG 59.320 60.000 0.00 0.00 33.06 1.31 F
3290 3936 0.836606 TTGAGTGTCAGCTTGGGACA 59.163 50.000 1.42 1.42 42.62 4.02 F
4705 5475 0.459237 CTGCCGAGGTCAACTAGCTG 60.459 60.000 0.00 0.00 35.60 4.24 F
5168 5939 0.107017 GCTGCAGCAAAGGATCCCTA 60.107 55.000 33.36 0.00 41.59 3.53 F
6741 7773 0.035317 CTGCAGGCTTCACTGTACCA 59.965 55.000 5.57 0.00 40.59 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 2856 2.267324 GACCCAGAGCCTGCAGTC 59.733 66.667 13.81 0.00 0.00 3.51 R
3301 3947 0.257039 TGGTACCTACTCCCTCCGTC 59.743 60.000 14.36 0.00 0.00 4.79 R
3847 4504 0.823356 TTTGAGGCTTGAGGGTGTGC 60.823 55.000 0.00 0.00 0.00 4.57 R
4774 5544 3.011818 CAGCAGCACATTCCTGTATTCA 58.988 45.455 0.00 0.00 33.14 2.57 R
6630 7662 0.595588 CATTGTACGCAACTGGCCAA 59.404 50.000 7.01 0.00 40.31 4.52 R
6988 8178 0.250234 TGAAGGCCCTCGTGAATCTG 59.750 55.000 0.00 0.00 0.00 2.90 R
7647 9123 0.025898 GAATTACTCGCCGCGGAAAC 59.974 55.000 33.48 10.82 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 114 2.830923 TCCATCATTTGTTTGGCCGATT 59.169 40.909 0.00 0.00 0.00 3.34
368 390 3.243336 ACACTCTTGTCTCGTATTTCGC 58.757 45.455 0.00 0.00 39.67 4.70
447 476 4.141551 TGCTTGTCATCTGAGCCATATTCT 60.142 41.667 0.00 0.00 35.59 2.40
581 630 7.141758 TCCTTCTACCATTCATTTAGCATCT 57.858 36.000 0.00 0.00 0.00 2.90
604 656 3.588842 CCCCATCTTCTATATTGGGCTGA 59.411 47.826 2.72 0.00 46.26 4.26
746 829 7.005296 AGAGAGTTTCCTGTTAGTTCTACTCA 58.995 38.462 0.00 0.00 34.66 3.41
807 890 2.685897 TGACTGTTTTTAGGTGGTGCAC 59.314 45.455 8.80 8.80 0.00 4.57
858 1135 4.771590 TGGAAGAATGTGAATGCAGAAC 57.228 40.909 0.00 0.00 0.00 3.01
1292 1761 9.819267 AGTTCTAGTATTTAGGTGCATACTTTC 57.181 33.333 1.03 0.00 37.40 2.62
1306 1775 9.000486 GGTGCATACTTTCTTACTTTTACTCTT 58.000 33.333 0.00 0.00 0.00 2.85
1412 1881 9.926158 AAATAGCAACATGTTGATGTGATTTTA 57.074 25.926 36.65 16.95 42.30 1.52
1585 2075 8.782533 AGATGAATCGAAACAACAAACTTAAC 57.217 30.769 0.00 0.00 0.00 2.01
1619 2109 6.319658 GCACCTCCTAGATCAAAATGAAATCA 59.680 38.462 0.00 0.00 0.00 2.57
1657 2147 2.522680 GGGCAATCTGGGGGATGC 60.523 66.667 0.00 0.00 34.45 3.91
1740 2230 4.158394 CCATTCTTGGTAGATGTGGGTTTG 59.842 45.833 0.00 0.00 38.30 2.93
1881 2415 6.596888 GCATATTCTCATTAGCTGCCATTCTA 59.403 38.462 0.00 0.00 0.00 2.10
2217 2856 5.846203 ACTCTTGGATTTTGTTTGGTCATG 58.154 37.500 0.00 0.00 0.00 3.07
2363 3002 9.681062 CCTTAATCTTCAGGAACCTTATTTGTA 57.319 33.333 0.00 0.00 30.81 2.41
2457 3097 2.436417 ACAACGAGCAAACATAGCCAT 58.564 42.857 0.00 0.00 0.00 4.40
2550 3190 1.740296 AACGTACCATGCACCGAGC 60.740 57.895 0.00 0.00 45.96 5.03
2736 3382 4.527509 ATCTCTGCACTATCCCGTAATG 57.472 45.455 0.00 0.00 0.00 1.90
2970 3616 0.680061 GGAGCGGGGTTCCACTATAG 59.320 60.000 0.00 0.00 33.06 1.31
3199 3845 5.928264 AGCACCAAATGAGCTTTTTCAATAC 59.072 36.000 0.00 0.00 34.37 1.89
3200 3846 5.928264 GCACCAAATGAGCTTTTTCAATACT 59.072 36.000 0.00 0.00 0.00 2.12
3201 3847 6.089954 GCACCAAATGAGCTTTTTCAATACTC 59.910 38.462 0.00 0.00 0.00 2.59
3202 3848 6.587608 CACCAAATGAGCTTTTTCAATACTCC 59.412 38.462 0.00 0.00 0.00 3.85
3203 3849 6.101997 CCAAATGAGCTTTTTCAATACTCCC 58.898 40.000 0.00 0.00 0.00 4.30
3204 3850 6.071165 CCAAATGAGCTTTTTCAATACTCCCT 60.071 38.462 0.00 0.00 0.00 4.20
3205 3851 6.765915 AATGAGCTTTTTCAATACTCCCTC 57.234 37.500 0.00 0.00 0.00 4.30
3206 3852 4.589908 TGAGCTTTTTCAATACTCCCTCC 58.410 43.478 0.00 0.00 0.00 4.30
3207 3853 3.610911 AGCTTTTTCAATACTCCCTCCG 58.389 45.455 0.00 0.00 0.00 4.63
3208 3854 3.009143 AGCTTTTTCAATACTCCCTCCGT 59.991 43.478 0.00 0.00 0.00 4.69
3209 3855 3.374367 GCTTTTTCAATACTCCCTCCGTC 59.626 47.826 0.00 0.00 0.00 4.79
3210 3856 4.833390 CTTTTTCAATACTCCCTCCGTCT 58.167 43.478 0.00 0.00 0.00 4.18
3211 3857 3.887621 TTTCAATACTCCCTCCGTCTG 57.112 47.619 0.00 0.00 0.00 3.51
3212 3858 2.820728 TCAATACTCCCTCCGTCTGA 57.179 50.000 0.00 0.00 0.00 3.27
3213 3859 3.095912 TCAATACTCCCTCCGTCTGAA 57.904 47.619 0.00 0.00 0.00 3.02
3214 3860 3.437213 TCAATACTCCCTCCGTCTGAAA 58.563 45.455 0.00 0.00 0.00 2.69
3215 3861 3.835978 TCAATACTCCCTCCGTCTGAAAA 59.164 43.478 0.00 0.00 0.00 2.29
3216 3862 4.285003 TCAATACTCCCTCCGTCTGAAAAA 59.715 41.667 0.00 0.00 0.00 1.94
3217 3863 2.841442 ACTCCCTCCGTCTGAAAAAG 57.159 50.000 0.00 0.00 0.00 2.27
3218 3864 1.270893 ACTCCCTCCGTCTGAAAAAGC 60.271 52.381 0.00 0.00 0.00 3.51
3219 3865 1.002544 CTCCCTCCGTCTGAAAAAGCT 59.997 52.381 0.00 0.00 0.00 3.74
3220 3866 1.420138 TCCCTCCGTCTGAAAAAGCTT 59.580 47.619 0.00 0.00 0.00 3.74
3221 3867 1.537202 CCCTCCGTCTGAAAAAGCTTG 59.463 52.381 0.00 0.00 0.00 4.01
3222 3868 2.222027 CCTCCGTCTGAAAAAGCTTGT 58.778 47.619 0.00 0.00 0.00 3.16
3223 3869 2.224314 CCTCCGTCTGAAAAAGCTTGTC 59.776 50.000 0.00 1.07 0.00 3.18
3224 3870 2.218603 TCCGTCTGAAAAAGCTTGTCC 58.781 47.619 0.00 0.00 0.00 4.02
3225 3871 1.266989 CCGTCTGAAAAAGCTTGTCCC 59.733 52.381 0.00 0.00 0.00 4.46
3226 3872 2.222027 CGTCTGAAAAAGCTTGTCCCT 58.778 47.619 0.00 0.00 0.00 4.20
3227 3873 2.224314 CGTCTGAAAAAGCTTGTCCCTC 59.776 50.000 0.00 0.00 0.00 4.30
3228 3874 3.214328 GTCTGAAAAAGCTTGTCCCTCA 58.786 45.455 0.00 0.00 0.00 3.86
3229 3875 3.632145 GTCTGAAAAAGCTTGTCCCTCAA 59.368 43.478 0.00 0.00 34.61 3.02
3230 3876 4.097892 GTCTGAAAAAGCTTGTCCCTCAAA 59.902 41.667 0.00 0.00 35.48 2.69
3231 3877 4.895297 TCTGAAAAAGCTTGTCCCTCAAAT 59.105 37.500 0.00 0.00 35.48 2.32
3232 3878 4.947645 TGAAAAAGCTTGTCCCTCAAATG 58.052 39.130 0.00 0.00 35.48 2.32
3233 3879 4.202243 TGAAAAAGCTTGTCCCTCAAATGG 60.202 41.667 0.00 0.00 35.48 3.16
3234 3880 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
3235 3881 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
3236 3882 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
3237 3883 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3238 3884 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
3239 3885 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3240 3886 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
3241 3887 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
3242 3888 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
3243 3889 7.392766 TTGTCCCTCAAATGGATGTATCTAT 57.607 36.000 0.00 0.00 33.65 1.98
3244 3890 7.009179 TGTCCCTCAAATGGATGTATCTATC 57.991 40.000 0.00 0.00 33.65 2.08
3245 3891 6.558394 TGTCCCTCAAATGGATGTATCTATCA 59.442 38.462 0.00 0.00 33.65 2.15
3246 3892 6.876257 GTCCCTCAAATGGATGTATCTATCAC 59.124 42.308 0.00 0.00 33.65 3.06
3247 3893 6.013379 TCCCTCAAATGGATGTATCTATCACC 60.013 42.308 0.00 0.00 0.00 4.02
3248 3894 6.239973 CCCTCAAATGGATGTATCTATCACCA 60.240 42.308 0.00 0.00 0.00 4.17
3249 3895 7.226441 CCTCAAATGGATGTATCTATCACCAA 58.774 38.462 0.00 0.00 0.00 3.67
3250 3896 7.389884 CCTCAAATGGATGTATCTATCACCAAG 59.610 40.741 0.00 0.00 0.00 3.61
3251 3897 7.805163 TCAAATGGATGTATCTATCACCAAGT 58.195 34.615 0.00 0.00 0.00 3.16
3252 3898 8.274322 TCAAATGGATGTATCTATCACCAAGTT 58.726 33.333 0.00 0.00 0.00 2.66
3253 3899 9.559732 CAAATGGATGTATCTATCACCAAGTTA 57.440 33.333 0.00 0.00 0.00 2.24
3254 3900 9.784531 AAATGGATGTATCTATCACCAAGTTAG 57.215 33.333 0.00 0.00 0.00 2.34
3255 3901 7.914427 TGGATGTATCTATCACCAAGTTAGT 57.086 36.000 0.00 0.00 0.00 2.24
3256 3902 7.726216 TGGATGTATCTATCACCAAGTTAGTG 58.274 38.462 0.00 0.00 36.54 2.74
3257 3903 6.647067 GGATGTATCTATCACCAAGTTAGTGC 59.353 42.308 0.00 0.00 35.14 4.40
3258 3904 6.791867 TGTATCTATCACCAAGTTAGTGCT 57.208 37.500 0.00 0.00 35.14 4.40
3259 3905 7.891498 TGTATCTATCACCAAGTTAGTGCTA 57.109 36.000 0.00 0.00 35.14 3.49
3260 3906 7.941919 TGTATCTATCACCAAGTTAGTGCTAG 58.058 38.462 6.11 6.11 35.99 3.42
3261 3907 7.778382 TGTATCTATCACCAAGTTAGTGCTAGA 59.222 37.037 14.52 14.52 43.34 2.43
3262 3908 7.847711 ATCTATCACCAAGTTAGTGCTAGAT 57.152 36.000 16.95 16.95 43.27 1.98
3263 3909 8.941995 ATCTATCACCAAGTTAGTGCTAGATA 57.058 34.615 19.61 4.12 45.19 1.98
3264 3910 8.167605 TCTATCACCAAGTTAGTGCTAGATAC 57.832 38.462 9.90 0.00 37.79 2.24
3265 3911 6.791867 ATCACCAAGTTAGTGCTAGATACA 57.208 37.500 0.00 0.00 35.14 2.29
3266 3912 6.791867 TCACCAAGTTAGTGCTAGATACAT 57.208 37.500 0.00 0.00 35.14 2.29
3267 3913 6.806751 TCACCAAGTTAGTGCTAGATACATC 58.193 40.000 0.00 0.00 35.14 3.06
3268 3914 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3269 3915 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3270 3916 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
3271 3917 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
3272 3918 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
3273 3919 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
3274 3920 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
3275 3921 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
3276 3922 6.491714 AGTGCTAGATACATCCATTTGAGT 57.508 37.500 0.00 0.00 0.00 3.41
3277 3923 6.286758 AGTGCTAGATACATCCATTTGAGTG 58.713 40.000 0.00 0.00 0.00 3.51
3278 3924 6.051717 GTGCTAGATACATCCATTTGAGTGT 58.948 40.000 0.00 0.00 0.00 3.55
3279 3925 6.201806 GTGCTAGATACATCCATTTGAGTGTC 59.798 42.308 0.00 0.00 0.00 3.67
3280 3926 6.127083 TGCTAGATACATCCATTTGAGTGTCA 60.127 38.462 0.00 0.00 0.00 3.58
3281 3927 6.423302 GCTAGATACATCCATTTGAGTGTCAG 59.577 42.308 0.00 0.00 0.00 3.51
3282 3928 5.121811 AGATACATCCATTTGAGTGTCAGC 58.878 41.667 0.00 0.00 0.00 4.26
3283 3929 3.430042 ACATCCATTTGAGTGTCAGCT 57.570 42.857 0.00 0.00 0.00 4.24
3284 3930 3.759581 ACATCCATTTGAGTGTCAGCTT 58.240 40.909 0.00 0.00 0.00 3.74
3285 3931 3.504906 ACATCCATTTGAGTGTCAGCTTG 59.495 43.478 0.00 0.00 0.00 4.01
3286 3932 2.507484 TCCATTTGAGTGTCAGCTTGG 58.493 47.619 0.00 0.00 0.00 3.61
3287 3933 1.542915 CCATTTGAGTGTCAGCTTGGG 59.457 52.381 0.00 0.00 0.00 4.12
3288 3934 2.507484 CATTTGAGTGTCAGCTTGGGA 58.493 47.619 0.00 0.00 0.00 4.37
3289 3935 1.967319 TTTGAGTGTCAGCTTGGGAC 58.033 50.000 0.00 0.00 35.83 4.46
3290 3936 0.836606 TTGAGTGTCAGCTTGGGACA 59.163 50.000 1.42 1.42 42.62 4.02
3312 3958 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
3313 3959 1.631405 TTTTTCGGACGGAGGGAGTA 58.369 50.000 0.00 0.00 0.00 2.59
3420 4066 2.301870 AGTATTGTTTGGAGAGGCACGA 59.698 45.455 0.00 0.00 0.00 4.35
3462 4108 1.269309 GCAGAGTTACGGATCGCTGAT 60.269 52.381 13.02 0.00 34.36 2.90
3624 4281 1.593196 CGGACTTTTCTGAAGCACCA 58.407 50.000 0.00 0.00 0.00 4.17
3647 4304 6.039616 CAGTGCTTATTTCTACAGGAGAGAC 58.960 44.000 0.00 0.00 34.93 3.36
3702 4359 4.962693 CACCGATGCTTAAGAAAAGTCTG 58.037 43.478 6.67 0.00 33.05 3.51
3726 4383 7.275920 TGGTTTATTTCTCTAAGCATCTCTCC 58.724 38.462 0.00 0.00 0.00 3.71
3847 4504 2.754472 TGACCTGACATGACTTGAACG 58.246 47.619 0.00 0.00 0.00 3.95
3851 4508 1.866601 CTGACATGACTTGAACGCACA 59.133 47.619 0.00 0.00 0.00 4.57
4335 5103 8.485976 TCTTTTTGTTGGGTAATTCAAAACTG 57.514 30.769 0.00 0.00 38.76 3.16
4705 5475 0.459237 CTGCCGAGGTCAACTAGCTG 60.459 60.000 0.00 0.00 35.60 4.24
5168 5939 0.107017 GCTGCAGCAAAGGATCCCTA 60.107 55.000 33.36 0.00 41.59 3.53
5172 5943 3.290710 TGCAGCAAAGGATCCCTAAATC 58.709 45.455 8.55 0.00 31.13 2.17
5440 6211 5.187772 ACTGAAGTGTGGAGATATTGCAGTA 59.812 40.000 0.00 0.00 31.81 2.74
5858 6884 7.310664 ACAGTGCATTTTATTGATGACTTCTG 58.689 34.615 0.00 0.00 0.00 3.02
5905 6931 5.416271 TCTTTACCACCTATGTTCTGACC 57.584 43.478 0.00 0.00 0.00 4.02
5926 6952 1.007118 TCAGGATGGGCTAGTCTGTCA 59.993 52.381 0.00 0.00 36.16 3.58
5929 6955 1.346068 GGATGGGCTAGTCTGTCATCC 59.654 57.143 13.28 13.28 44.45 3.51
5930 6956 1.346068 GATGGGCTAGTCTGTCATCCC 59.654 57.143 0.00 0.00 0.00 3.85
6007 7033 6.481313 TGAGAATGAAAGAAGATAGCGATTGG 59.519 38.462 0.00 0.00 0.00 3.16
6008 7034 5.762218 AGAATGAAAGAAGATAGCGATTGGG 59.238 40.000 0.00 0.00 0.00 4.12
6094 7120 0.179113 GCTCTGTGCTAGCACCTCTC 60.179 60.000 37.90 23.30 45.63 3.20
6098 7124 0.826715 TGTGCTAGCACCTCTCATCC 59.173 55.000 37.90 16.00 45.63 3.51
6301 7330 9.628746 TGTATGTGATCATTTTGTCTGAAATTG 57.371 29.630 0.00 0.00 35.70 2.32
6319 7348 7.038659 TGAAATTGTTCTTTTATAATGGGCGG 58.961 34.615 0.00 0.00 34.60 6.13
6331 7360 8.655651 TTTATAATGGGCGGAATTTGAATTTC 57.344 30.769 0.00 0.00 0.00 2.17
6356 7385 1.798626 TCCTCATGTGCTAGCTCCAT 58.201 50.000 17.23 14.63 0.00 3.41
6629 7661 5.045012 AGATACGACACTGGTGGTCTATA 57.955 43.478 5.70 0.00 37.20 1.31
6630 7662 5.632118 AGATACGACACTGGTGGTCTATAT 58.368 41.667 5.70 0.00 37.20 0.86
6637 7669 2.439507 ACTGGTGGTCTATATTGGCCAG 59.560 50.000 10.94 11.85 45.26 4.85
6717 7749 2.137810 TTGGCCTTAAAGAATCCCCG 57.862 50.000 3.32 0.00 0.00 5.73
6741 7773 0.035317 CTGCAGGCTTCACTGTACCA 59.965 55.000 5.57 0.00 40.59 3.25
6802 7834 1.337354 TGCGTCTTCTGCCGTTATTCA 60.337 47.619 0.00 0.00 0.00 2.57
6824 7856 6.805215 CAGGACTTTCCCTGCACAGGTTAA 62.805 50.000 15.39 6.76 46.16 2.01
6853 7885 9.638239 TGATTTCTTTAACAATTGGTAGAATGC 57.362 29.630 10.83 6.14 0.00 3.56
6854 7886 8.687824 ATTTCTTTAACAATTGGTAGAATGCG 57.312 30.769 10.83 0.00 0.00 4.73
6855 7887 6.811253 TCTTTAACAATTGGTAGAATGCGT 57.189 33.333 10.83 0.00 0.00 5.24
6856 7888 7.209471 TCTTTAACAATTGGTAGAATGCGTT 57.791 32.000 10.83 0.00 0.00 4.84
6859 7891 7.861176 TTAACAATTGGTAGAATGCGTTTTC 57.139 32.000 10.83 0.00 0.00 2.29
6861 7893 5.460646 ACAATTGGTAGAATGCGTTTTCTG 58.539 37.500 10.83 0.00 36.63 3.02
6863 7895 2.544480 GGTAGAATGCGTTTTCTGCC 57.456 50.000 16.36 16.36 46.58 4.85
6864 7896 1.202031 GGTAGAATGCGTTTTCTGCCG 60.202 52.381 16.36 0.00 44.84 5.69
6865 7897 1.463444 GTAGAATGCGTTTTCTGCCGT 59.537 47.619 10.94 0.00 36.63 5.68
6866 7898 0.951558 AGAATGCGTTTTCTGCCGTT 59.048 45.000 0.00 0.00 34.68 4.44
6975 8165 2.094494 GGACAGAGAAGACGAGCAATCA 60.094 50.000 0.00 0.00 0.00 2.57
6978 8168 2.094286 CAGAGAAGACGAGCAATCAGGT 60.094 50.000 0.00 0.00 0.00 4.00
6987 8177 3.181471 ACGAGCAATCAGGTAGAATGGAG 60.181 47.826 0.00 0.00 0.00 3.86
6988 8178 3.137533 GAGCAATCAGGTAGAATGGAGC 58.862 50.000 0.00 0.00 0.00 4.70
7057 8247 3.589988 GAATCCGCCGATGACATATCTT 58.410 45.455 0.00 0.00 0.00 2.40
7064 8254 4.035091 CGCCGATGACATATCTTTGGAAAA 59.965 41.667 0.00 0.00 36.14 2.29
7122 8312 0.610687 GCAGCTCAGGTGAACCTAGT 59.389 55.000 8.42 0.00 46.65 2.57
7185 8375 1.831652 CGACACTGAAAGGGCTCCCT 61.832 60.000 0.54 0.54 45.89 4.20
7234 8424 0.462047 ACTCGGTTTCATGATCGGGC 60.462 55.000 11.70 0.00 0.00 6.13
7254 8444 1.803519 GCAGAAGAGAGGCGTGTCG 60.804 63.158 0.00 0.00 0.00 4.35
7340 8530 4.110482 GACCAAGATACACACATACGGAC 58.890 47.826 0.00 0.00 0.00 4.79
7391 8584 2.031944 GGAGTGTCGCCTGTTTTTCTTC 60.032 50.000 0.00 0.00 0.00 2.87
7397 8590 4.035208 TGTCGCCTGTTTTTCTTCTCTTTC 59.965 41.667 0.00 0.00 0.00 2.62
7428 8621 0.459237 TGTTTGCCTGTTTGGTTGCG 60.459 50.000 0.00 0.00 38.35 4.85
7458 8655 5.108027 GCAATTTTGTGTTTAAATCGACGCT 60.108 36.000 0.00 0.00 0.00 5.07
7460 8657 7.357695 GCAATTTTGTGTTTAAATCGACGCTTA 60.358 33.333 0.00 0.00 0.00 3.09
7545 8757 4.798387 CCTCAGTTAAACAAGTTGTTGTGC 59.202 41.667 21.53 13.64 46.68 4.57
7608 9049 0.249120 CGACTGTTATGTGCCCCTGA 59.751 55.000 0.00 0.00 0.00 3.86
7609 9050 1.338674 CGACTGTTATGTGCCCCTGAA 60.339 52.381 0.00 0.00 0.00 3.02
7610 9051 2.790433 GACTGTTATGTGCCCCTGAAA 58.210 47.619 0.00 0.00 0.00 2.69
7611 9052 3.356290 GACTGTTATGTGCCCCTGAAAT 58.644 45.455 0.00 0.00 0.00 2.17
7612 9053 4.523083 GACTGTTATGTGCCCCTGAAATA 58.477 43.478 0.00 0.00 0.00 1.40
7613 9054 5.129368 ACTGTTATGTGCCCCTGAAATAT 57.871 39.130 0.00 0.00 0.00 1.28
7647 9123 7.244800 GCTTTTACAGCGAGGAATACATCCG 62.245 48.000 0.00 0.00 46.01 4.18
7678 9155 1.413077 GAGTAATTCTGGACGGAGGGG 59.587 57.143 0.00 0.00 0.00 4.79
7711 9622 3.740115 AGTTGTGAAACTGAATAGCCGT 58.260 40.909 0.00 0.00 38.04 5.68
7866 9799 1.296068 GCTCTGTTGCTGGCTCTCT 59.704 57.895 0.00 0.00 0.00 3.10
7872 9805 2.149383 TTGCTGGCTCTCTGGTGGT 61.149 57.895 0.00 0.00 0.00 4.16
7952 9916 2.653953 ATTTATGGACGGGCGGACGG 62.654 60.000 0.00 0.00 38.39 4.79
7980 9955 1.226030 CTTTTGCTTTGGCCTGCTGC 61.226 55.000 3.32 3.86 37.74 5.25
7989 9964 3.134127 GCCTGCTGCCCGGTTTAG 61.134 66.667 0.00 0.00 0.00 1.85
7993 9968 0.240945 CTGCTGCCCGGTTTAGTTTG 59.759 55.000 0.00 0.00 0.00 2.93
7994 9969 0.179015 TGCTGCCCGGTTTAGTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
7995 9970 0.240145 GCTGCCCGGTTTAGTTTGAC 59.760 55.000 0.00 0.00 0.00 3.18
7996 9971 0.515564 CTGCCCGGTTTAGTTTGACG 59.484 55.000 0.00 0.00 0.00 4.35
7997 9972 0.885596 TGCCCGGTTTAGTTTGACGG 60.886 55.000 0.00 0.00 43.89 4.79
7998 9973 1.871077 CCCGGTTTAGTTTGACGGC 59.129 57.895 0.00 0.00 42.99 5.68
7999 9974 0.604511 CCCGGTTTAGTTTGACGGCT 60.605 55.000 0.00 0.00 42.99 5.52
8000 9975 0.794473 CCGGTTTAGTTTGACGGCTC 59.206 55.000 0.00 0.00 37.93 4.70
8001 9976 0.794473 CGGTTTAGTTTGACGGCTCC 59.206 55.000 0.00 0.00 0.00 4.70
8002 9977 0.794473 GGTTTAGTTTGACGGCTCCG 59.206 55.000 6.79 6.79 46.03 4.63
8014 9989 1.349259 CGGCTCCGTTAACGTTCCTG 61.349 60.000 25.15 13.71 37.74 3.86
8016 9991 1.632948 GCTCCGTTAACGTTCCTGCC 61.633 60.000 25.15 4.18 37.74 4.85
8019 9994 0.037605 CCGTTAACGTTCCTGCCTCT 60.038 55.000 25.15 0.00 37.74 3.69
8031 10006 1.891150 CCTGCCTCTGCACAAGAATTT 59.109 47.619 0.00 0.00 44.23 1.82
8032 10007 2.352421 CCTGCCTCTGCACAAGAATTTG 60.352 50.000 0.00 0.00 44.23 2.32
8033 10008 2.555325 CTGCCTCTGCACAAGAATTTGA 59.445 45.455 0.00 0.00 44.23 2.69
8034 10009 2.294233 TGCCTCTGCACAAGAATTTGAC 59.706 45.455 0.00 0.00 44.23 3.18
8035 10010 2.555757 GCCTCTGCACAAGAATTTGACT 59.444 45.455 0.00 0.00 37.73 3.41
8036 10011 3.005155 GCCTCTGCACAAGAATTTGACTT 59.995 43.478 0.00 0.00 37.73 3.01
8037 10012 4.500375 GCCTCTGCACAAGAATTTGACTTT 60.500 41.667 0.00 0.00 37.73 2.66
8038 10013 5.218139 CCTCTGCACAAGAATTTGACTTTC 58.782 41.667 0.00 0.00 37.73 2.62
8043 10018 6.498304 TGCACAAGAATTTGACTTTCTTCTC 58.502 36.000 0.00 0.00 40.53 2.87
8045 10020 7.148018 TGCACAAGAATTTGACTTTCTTCTCTT 60.148 33.333 0.00 0.00 40.53 2.85
8051 10026 4.918810 TTGACTTTCTTCTCTTTTGGCC 57.081 40.909 0.00 0.00 0.00 5.36
8061 10036 0.675633 TCTTTTGGCCAAGAAGCAGC 59.324 50.000 24.20 0.00 29.41 5.25
8064 10039 2.091102 TTTGGCCAAGAAGCAGCAGC 62.091 55.000 19.48 0.00 42.56 5.25
8065 10040 2.987547 GGCCAAGAAGCAGCAGCA 60.988 61.111 3.17 0.00 45.49 4.41
8066 10041 2.567049 GCCAAGAAGCAGCAGCAG 59.433 61.111 3.17 0.00 45.49 4.24
8067 10042 2.567049 CCAAGAAGCAGCAGCAGC 59.433 61.111 3.17 0.46 45.49 5.25
8068 10043 2.265904 CCAAGAAGCAGCAGCAGCA 61.266 57.895 12.92 0.00 45.49 4.41
8069 10044 1.210413 CAAGAAGCAGCAGCAGCAG 59.790 57.895 12.92 0.00 45.49 4.24
8070 10045 1.072678 AAGAAGCAGCAGCAGCAGA 59.927 52.632 12.92 0.00 45.49 4.26
8071 10046 0.536687 AAGAAGCAGCAGCAGCAGAA 60.537 50.000 12.92 0.00 45.49 3.02
8072 10047 0.956410 AGAAGCAGCAGCAGCAGAAG 60.956 55.000 12.92 0.00 45.49 2.85
8073 10048 0.954449 GAAGCAGCAGCAGCAGAAGA 60.954 55.000 12.92 0.00 45.49 2.87
8074 10049 0.536687 AAGCAGCAGCAGCAGAAGAA 60.537 50.000 12.92 0.00 45.49 2.52
8075 10050 0.322636 AGCAGCAGCAGCAGAAGAAT 60.323 50.000 12.92 0.00 45.49 2.40
8076 10051 0.526662 GCAGCAGCAGCAGAAGAATT 59.473 50.000 4.63 0.00 45.49 2.17
8077 10052 1.732732 GCAGCAGCAGCAGAAGAATTG 60.733 52.381 4.63 0.00 45.49 2.32
8078 10053 1.810755 CAGCAGCAGCAGAAGAATTGA 59.189 47.619 3.17 0.00 45.49 2.57
8079 10054 2.228103 CAGCAGCAGCAGAAGAATTGAA 59.772 45.455 3.17 0.00 45.49 2.69
8080 10055 2.889045 AGCAGCAGCAGAAGAATTGAAA 59.111 40.909 3.17 0.00 45.49 2.69
8081 10056 2.985139 GCAGCAGCAGAAGAATTGAAAC 59.015 45.455 0.00 0.00 41.58 2.78
8082 10057 3.231965 CAGCAGCAGAAGAATTGAAACG 58.768 45.455 0.00 0.00 0.00 3.60
8083 10058 3.058708 CAGCAGCAGAAGAATTGAAACGA 60.059 43.478 0.00 0.00 0.00 3.85
8084 10059 3.755378 AGCAGCAGAAGAATTGAAACGAT 59.245 39.130 0.00 0.00 0.00 3.73
8085 10060 4.094212 GCAGCAGAAGAATTGAAACGATC 58.906 43.478 0.00 0.00 0.00 3.69
8086 10061 4.656041 CAGCAGAAGAATTGAAACGATCC 58.344 43.478 0.00 0.00 0.00 3.36
8087 10062 3.691609 AGCAGAAGAATTGAAACGATCCC 59.308 43.478 0.00 0.00 0.00 3.85
8088 10063 3.485877 GCAGAAGAATTGAAACGATCCCG 60.486 47.826 0.00 0.00 42.50 5.14
8099 10074 1.794222 CGATCCCGTGAAACAAGGC 59.206 57.895 0.00 0.00 35.74 4.35
8100 10075 0.953471 CGATCCCGTGAAACAAGGCA 60.953 55.000 0.00 0.00 35.74 4.75
8101 10076 1.463674 GATCCCGTGAAACAAGGCAT 58.536 50.000 0.00 0.00 35.74 4.40
8102 10077 1.818674 GATCCCGTGAAACAAGGCATT 59.181 47.619 0.00 0.00 35.74 3.56
8103 10078 2.570415 TCCCGTGAAACAAGGCATTA 57.430 45.000 0.00 0.00 35.74 1.90
8104 10079 2.432444 TCCCGTGAAACAAGGCATTAG 58.568 47.619 0.00 0.00 35.74 1.73
8105 10080 2.159382 CCCGTGAAACAAGGCATTAGT 58.841 47.619 0.00 0.00 35.74 2.24
8106 10081 2.095263 CCCGTGAAACAAGGCATTAGTG 60.095 50.000 0.00 0.00 35.74 2.74
8107 10082 2.552315 CCGTGAAACAAGGCATTAGTGT 59.448 45.455 0.00 0.00 35.74 3.55
8108 10083 3.554524 CGTGAAACAAGGCATTAGTGTG 58.445 45.455 0.00 0.00 35.74 3.82
8109 10084 3.609175 CGTGAAACAAGGCATTAGTGTGG 60.609 47.826 0.00 0.00 35.74 4.17
8110 10085 3.317993 GTGAAACAAGGCATTAGTGTGGT 59.682 43.478 0.00 0.00 36.32 4.16
8111 10086 3.317711 TGAAACAAGGCATTAGTGTGGTG 59.682 43.478 0.00 0.00 0.00 4.17
8112 10087 1.909700 ACAAGGCATTAGTGTGGTGG 58.090 50.000 0.00 0.00 0.00 4.61
8113 10088 1.176527 CAAGGCATTAGTGTGGTGGG 58.823 55.000 0.00 0.00 0.00 4.61
8114 10089 0.611896 AAGGCATTAGTGTGGTGGGC 60.612 55.000 0.00 0.00 0.00 5.36
8115 10090 1.000896 GGCATTAGTGTGGTGGGCT 60.001 57.895 0.00 0.00 0.00 5.19
8116 10091 1.315257 GGCATTAGTGTGGTGGGCTG 61.315 60.000 0.00 0.00 0.00 4.85
8117 10092 1.315257 GCATTAGTGTGGTGGGCTGG 61.315 60.000 0.00 0.00 0.00 4.85
8118 10093 1.000896 ATTAGTGTGGTGGGCTGGC 60.001 57.895 0.00 0.00 0.00 4.85
8119 10094 2.499303 ATTAGTGTGGTGGGCTGGCC 62.499 60.000 14.23 14.23 0.00 5.36
8126 10101 4.329545 GTGGGCTGGCCTCGTTCA 62.330 66.667 21.72 0.00 36.10 3.18
8127 10102 4.020617 TGGGCTGGCCTCGTTCAG 62.021 66.667 21.72 0.00 36.10 3.02
8128 10103 3.706373 GGGCTGGCCTCGTTCAGA 61.706 66.667 13.80 0.00 36.10 3.27
8129 10104 2.586792 GGCTGGCCTCGTTCAGAT 59.413 61.111 3.32 0.00 33.11 2.90
8130 10105 1.078143 GGCTGGCCTCGTTCAGATT 60.078 57.895 3.32 0.00 33.11 2.40
8131 10106 1.092345 GGCTGGCCTCGTTCAGATTC 61.092 60.000 3.32 0.00 33.11 2.52
8132 10107 1.424493 GCTGGCCTCGTTCAGATTCG 61.424 60.000 3.32 0.00 33.11 3.34
8133 10108 0.807667 CTGGCCTCGTTCAGATTCGG 60.808 60.000 3.32 0.00 33.11 4.30
8134 10109 1.218316 GGCCTCGTTCAGATTCGGT 59.782 57.895 0.00 0.00 0.00 4.69
8135 10110 0.391263 GGCCTCGTTCAGATTCGGTT 60.391 55.000 0.00 0.00 0.00 4.44
8136 10111 1.000145 GCCTCGTTCAGATTCGGTTC 59.000 55.000 0.00 0.00 0.00 3.62
8137 10112 1.641577 CCTCGTTCAGATTCGGTTCC 58.358 55.000 0.00 0.00 0.00 3.62
8138 10113 1.067142 CCTCGTTCAGATTCGGTTCCA 60.067 52.381 0.00 0.00 0.00 3.53
8139 10114 2.418746 CCTCGTTCAGATTCGGTTCCAT 60.419 50.000 0.00 0.00 0.00 3.41
8140 10115 2.860735 CTCGTTCAGATTCGGTTCCATC 59.139 50.000 0.00 0.00 0.00 3.51
8141 10116 2.232696 TCGTTCAGATTCGGTTCCATCA 59.767 45.455 0.00 0.00 0.00 3.07
8142 10117 3.000041 CGTTCAGATTCGGTTCCATCAA 59.000 45.455 0.00 0.00 0.00 2.57
8143 10118 3.181520 CGTTCAGATTCGGTTCCATCAAC 60.182 47.826 0.00 0.00 0.00 3.18
8144 10119 2.616960 TCAGATTCGGTTCCATCAACG 58.383 47.619 0.00 0.00 35.59 4.10
8145 10120 2.232696 TCAGATTCGGTTCCATCAACGA 59.767 45.455 0.00 0.00 35.59 3.85
8146 10121 2.348666 CAGATTCGGTTCCATCAACGAC 59.651 50.000 0.00 0.00 35.59 4.34
8147 10122 1.664151 GATTCGGTTCCATCAACGACC 59.336 52.381 0.00 0.00 35.59 4.79
8148 10123 0.682852 TTCGGTTCCATCAACGACCT 59.317 50.000 0.00 0.00 35.59 3.85
8149 10124 0.245539 TCGGTTCCATCAACGACCTC 59.754 55.000 0.00 0.00 35.59 3.85
8150 10125 1.076533 CGGTTCCATCAACGACCTCG 61.077 60.000 0.00 0.00 46.33 4.63
8170 10145 3.485947 GTGCTTTCACGCCAATAATGA 57.514 42.857 0.00 0.00 32.98 2.57
8171 10146 3.171277 GTGCTTTCACGCCAATAATGAC 58.829 45.455 0.00 0.00 32.98 3.06
8172 10147 3.081061 TGCTTTCACGCCAATAATGACT 58.919 40.909 0.00 0.00 0.00 3.41
8173 10148 4.094294 GTGCTTTCACGCCAATAATGACTA 59.906 41.667 0.00 0.00 32.98 2.59
8174 10149 4.881273 TGCTTTCACGCCAATAATGACTAT 59.119 37.500 0.00 0.00 0.00 2.12
8175 10150 6.018262 GTGCTTTCACGCCAATAATGACTATA 60.018 38.462 0.00 0.00 32.98 1.31
8176 10151 6.710295 TGCTTTCACGCCAATAATGACTATAT 59.290 34.615 0.00 0.00 0.00 0.86
8177 10152 7.875554 TGCTTTCACGCCAATAATGACTATATA 59.124 33.333 0.00 0.00 0.00 0.86
8178 10153 8.883731 GCTTTCACGCCAATAATGACTATATAT 58.116 33.333 0.00 0.00 0.00 0.86
8180 10155 9.719355 TTTCACGCCAATAATGACTATATATGT 57.281 29.630 0.00 0.00 0.00 2.29
8219 10194 8.984891 TCAATTACATTAGTGGCTTGATTTTG 57.015 30.769 0.00 0.00 0.00 2.44
8220 10195 8.801299 TCAATTACATTAGTGGCTTGATTTTGA 58.199 29.630 0.00 0.00 0.00 2.69
8221 10196 9.079833 CAATTACATTAGTGGCTTGATTTTGAG 57.920 33.333 0.00 0.00 0.00 3.02
8222 10197 7.994425 TTACATTAGTGGCTTGATTTTGAGA 57.006 32.000 0.00 0.00 0.00 3.27
8223 10198 8.579850 TTACATTAGTGGCTTGATTTTGAGAT 57.420 30.769 0.00 0.00 0.00 2.75
8224 10199 7.472334 ACATTAGTGGCTTGATTTTGAGATT 57.528 32.000 0.00 0.00 0.00 2.40
8225 10200 7.318141 ACATTAGTGGCTTGATTTTGAGATTG 58.682 34.615 0.00 0.00 0.00 2.67
8226 10201 7.177216 ACATTAGTGGCTTGATTTTGAGATTGA 59.823 33.333 0.00 0.00 0.00 2.57
8227 10202 7.707624 TTAGTGGCTTGATTTTGAGATTGAT 57.292 32.000 0.00 0.00 0.00 2.57
8228 10203 6.600882 AGTGGCTTGATTTTGAGATTGATT 57.399 33.333 0.00 0.00 0.00 2.57
8229 10204 7.001099 AGTGGCTTGATTTTGAGATTGATTT 57.999 32.000 0.00 0.00 0.00 2.17
8230 10205 8.125978 AGTGGCTTGATTTTGAGATTGATTTA 57.874 30.769 0.00 0.00 0.00 1.40
8231 10206 8.248945 AGTGGCTTGATTTTGAGATTGATTTAG 58.751 33.333 0.00 0.00 0.00 1.85
8232 10207 7.009907 GTGGCTTGATTTTGAGATTGATTTAGC 59.990 37.037 0.00 0.00 0.00 3.09
8233 10208 6.197842 GGCTTGATTTTGAGATTGATTTAGCG 59.802 38.462 0.00 0.00 0.00 4.26
8234 10209 6.968904 GCTTGATTTTGAGATTGATTTAGCGA 59.031 34.615 0.00 0.00 0.00 4.93
8235 10210 7.646922 GCTTGATTTTGAGATTGATTTAGCGAT 59.353 33.333 0.00 0.00 0.00 4.58
8236 10211 8.845942 TTGATTTTGAGATTGATTTAGCGATG 57.154 30.769 0.00 0.00 0.00 3.84
8237 10212 7.420002 TGATTTTGAGATTGATTTAGCGATGG 58.580 34.615 0.00 0.00 0.00 3.51
8238 10213 5.756195 TTTGAGATTGATTTAGCGATGGG 57.244 39.130 0.00 0.00 0.00 4.00
8239 10214 4.422073 TGAGATTGATTTAGCGATGGGT 57.578 40.909 0.00 0.00 0.00 4.51
8240 10215 4.780815 TGAGATTGATTTAGCGATGGGTT 58.219 39.130 0.00 0.00 0.00 4.11
8241 10216 5.192927 TGAGATTGATTTAGCGATGGGTTT 58.807 37.500 0.00 0.00 0.00 3.27
8242 10217 5.652014 TGAGATTGATTTAGCGATGGGTTTT 59.348 36.000 0.00 0.00 0.00 2.43
8243 10218 6.136541 AGATTGATTTAGCGATGGGTTTTC 57.863 37.500 0.00 0.00 0.00 2.29
8244 10219 5.652014 AGATTGATTTAGCGATGGGTTTTCA 59.348 36.000 0.00 0.00 0.00 2.69
8245 10220 5.713792 TTGATTTAGCGATGGGTTTTCAA 57.286 34.783 0.00 0.00 0.00 2.69
8246 10221 5.713792 TGATTTAGCGATGGGTTTTCAAA 57.286 34.783 0.00 0.00 0.00 2.69
8247 10222 6.279513 TGATTTAGCGATGGGTTTTCAAAT 57.720 33.333 0.00 0.00 0.00 2.32
8248 10223 6.098679 TGATTTAGCGATGGGTTTTCAAATG 58.901 36.000 0.00 0.00 0.00 2.32
8249 10224 5.713792 TTTAGCGATGGGTTTTCAAATGA 57.286 34.783 0.00 0.00 0.00 2.57
8250 10225 5.913137 TTAGCGATGGGTTTTCAAATGAT 57.087 34.783 0.00 0.00 0.00 2.45
8251 10226 4.806640 AGCGATGGGTTTTCAAATGATT 57.193 36.364 0.00 0.00 0.00 2.57
8252 10227 5.151297 AGCGATGGGTTTTCAAATGATTT 57.849 34.783 0.00 0.00 0.00 2.17
8253 10228 5.550290 AGCGATGGGTTTTCAAATGATTTT 58.450 33.333 0.00 0.00 0.00 1.82
8254 10229 5.997129 AGCGATGGGTTTTCAAATGATTTTT 59.003 32.000 0.00 0.00 0.00 1.94
8255 10230 6.073112 AGCGATGGGTTTTCAAATGATTTTTG 60.073 34.615 0.00 0.00 0.00 2.44
8256 10231 6.079120 CGATGGGTTTTCAAATGATTTTTGC 58.921 36.000 0.00 0.00 0.00 3.68
8257 10232 6.293298 CGATGGGTTTTCAAATGATTTTTGCA 60.293 34.615 0.00 0.00 0.00 4.08
8258 10233 6.129053 TGGGTTTTCAAATGATTTTTGCAC 57.871 33.333 0.00 0.00 0.00 4.57
8259 10234 5.067023 TGGGTTTTCAAATGATTTTTGCACC 59.933 36.000 0.00 0.00 0.00 5.01
8260 10235 5.067023 GGGTTTTCAAATGATTTTTGCACCA 59.933 36.000 0.00 0.00 31.22 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 114 3.388676 TGAGTACCCAAGACGGAAAGAAA 59.611 43.478 0.00 0.00 36.56 2.52
216 238 8.605065 AGATGTGGTGGGATTTAAATTTCAAAT 58.395 29.630 1.43 0.00 0.00 2.32
237 259 6.962182 TGAGATTTGAAATGGGTCTAGATGT 58.038 36.000 0.00 0.00 0.00 3.06
368 390 1.348064 TGGTGAACAGTAGGGGTCAG 58.652 55.000 0.00 0.00 0.00 3.51
447 476 3.708631 TCCAAACTCAAATCAAGCCCAAA 59.291 39.130 0.00 0.00 0.00 3.28
496 525 3.102090 GCATTAGGCAGGGGAAGAC 57.898 57.895 0.00 0.00 43.97 3.01
558 587 6.429385 GGAGATGCTAAATGAATGGTAGAAGG 59.571 42.308 0.00 0.00 0.00 3.46
604 656 3.370978 CCACGTGATTGACTTAAAGCGAT 59.629 43.478 19.30 0.00 0.00 4.58
704 765 7.941795 AACTCTCTTGAAAATTGAGCAAATG 57.058 32.000 0.00 0.00 31.20 2.32
725 786 7.784470 AGATGAGTAGAACTAACAGGAAACT 57.216 36.000 0.00 0.00 46.44 2.66
746 829 7.124599 TCCATTGCATTTGGTGAAGATAAAGAT 59.875 33.333 14.08 0.00 35.64 2.40
807 890 7.275341 TGCACAAAAGAAACTAAAACATGAGTG 59.725 33.333 0.00 0.00 0.00 3.51
1263 1732 8.634444 AGTATGCACCTAAATACTAGAACTCTG 58.366 37.037 0.00 0.00 37.74 3.35
1292 1761 8.621286 TGAAGAGGCAAAAAGAGTAAAAGTAAG 58.379 33.333 0.00 0.00 0.00 2.34
1306 1775 6.827586 ACGGTAAATATTGAAGAGGCAAAA 57.172 33.333 0.00 0.00 0.00 2.44
1527 2017 7.931015 AGGTATCAGGTCACATTTCCTATTA 57.069 36.000 0.00 0.00 32.26 0.98
1549 2039 8.648557 TGTTTCGATTCATCTCTACATTAAGG 57.351 34.615 0.00 0.00 0.00 2.69
1585 2075 7.630242 TTGATCTAGGAGGTGCTTAAATTTG 57.370 36.000 0.00 0.00 0.00 2.32
1619 2109 7.630082 TGCCCATTTGATTAGTTAAGTCTAGT 58.370 34.615 0.00 0.00 0.00 2.57
2217 2856 2.267324 GACCCAGAGCCTGCAGTC 59.733 66.667 13.81 0.00 0.00 3.51
2457 3097 3.118334 TCCCACGGACAAGAACAGTAAAA 60.118 43.478 0.00 0.00 0.00 1.52
3199 3845 1.002544 AGCTTTTTCAGACGGAGGGAG 59.997 52.381 0.00 0.00 0.00 4.30
3200 3846 1.056660 AGCTTTTTCAGACGGAGGGA 58.943 50.000 0.00 0.00 0.00 4.20
3201 3847 1.537202 CAAGCTTTTTCAGACGGAGGG 59.463 52.381 0.00 0.00 0.00 4.30
3202 3848 2.222027 ACAAGCTTTTTCAGACGGAGG 58.778 47.619 0.00 0.00 0.00 4.30
3203 3849 2.224314 GGACAAGCTTTTTCAGACGGAG 59.776 50.000 0.00 0.00 0.00 4.63
3204 3850 2.218603 GGACAAGCTTTTTCAGACGGA 58.781 47.619 0.00 0.00 0.00 4.69
3205 3851 1.266989 GGGACAAGCTTTTTCAGACGG 59.733 52.381 0.00 0.00 0.00 4.79
3206 3852 2.222027 AGGGACAAGCTTTTTCAGACG 58.778 47.619 0.00 0.00 0.00 4.18
3207 3853 3.214328 TGAGGGACAAGCTTTTTCAGAC 58.786 45.455 0.00 0.00 0.00 3.51
3208 3854 3.576078 TGAGGGACAAGCTTTTTCAGA 57.424 42.857 0.00 0.00 0.00 3.27
3209 3855 4.654091 TTTGAGGGACAAGCTTTTTCAG 57.346 40.909 0.00 0.00 39.77 3.02
3210 3856 4.202243 CCATTTGAGGGACAAGCTTTTTCA 60.202 41.667 0.00 0.00 39.77 2.69
3211 3857 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
3212 3858 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
3213 3859 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
3214 3860 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
3215 3861 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
3216 3862 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
3217 3863 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
3218 3864 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
3219 3865 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
3220 3866 6.558394 TGATAGATACATCCATTTGAGGGACA 59.442 38.462 0.00 0.00 37.23 4.02
3221 3867 6.876257 GTGATAGATACATCCATTTGAGGGAC 59.124 42.308 0.00 0.00 37.23 4.46
3222 3868 6.013379 GGTGATAGATACATCCATTTGAGGGA 60.013 42.308 0.00 0.00 39.14 4.20
3223 3869 6.176183 GGTGATAGATACATCCATTTGAGGG 58.824 44.000 0.00 0.00 0.00 4.30
3224 3870 6.772605 TGGTGATAGATACATCCATTTGAGG 58.227 40.000 0.00 0.00 0.00 3.86
3225 3871 7.935755 ACTTGGTGATAGATACATCCATTTGAG 59.064 37.037 0.00 0.00 0.00 3.02
3226 3872 7.805163 ACTTGGTGATAGATACATCCATTTGA 58.195 34.615 0.00 0.00 0.00 2.69
3227 3873 8.455903 AACTTGGTGATAGATACATCCATTTG 57.544 34.615 0.00 0.00 0.00 2.32
3228 3874 9.784531 CTAACTTGGTGATAGATACATCCATTT 57.215 33.333 0.00 0.00 0.00 2.32
3229 3875 8.938883 ACTAACTTGGTGATAGATACATCCATT 58.061 33.333 0.00 0.00 0.00 3.16
3230 3876 8.370940 CACTAACTTGGTGATAGATACATCCAT 58.629 37.037 0.00 0.00 36.89 3.41
3231 3877 7.686859 GCACTAACTTGGTGATAGATACATCCA 60.687 40.741 9.34 0.00 36.89 3.41
3232 3878 6.647067 GCACTAACTTGGTGATAGATACATCC 59.353 42.308 9.34 0.00 36.89 3.51
3233 3879 7.437748 AGCACTAACTTGGTGATAGATACATC 58.562 38.462 9.34 0.00 36.89 3.06
3234 3880 7.366847 AGCACTAACTTGGTGATAGATACAT 57.633 36.000 9.34 0.00 36.89 2.29
3235 3881 6.791867 AGCACTAACTTGGTGATAGATACA 57.208 37.500 9.34 0.00 36.89 2.29
3241 3887 7.891498 TGTATCTAGCACTAACTTGGTGATA 57.109 36.000 9.34 6.30 36.89 2.15
3242 3888 6.791867 TGTATCTAGCACTAACTTGGTGAT 57.208 37.500 9.34 5.41 36.89 3.06
3243 3889 6.183360 GGATGTATCTAGCACTAACTTGGTGA 60.183 42.308 9.34 0.00 36.89 4.02
3244 3890 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
3245 3891 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
3246 3892 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
3247 3893 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
3248 3894 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
3249 3895 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
3250 3896 7.928706 ACTCAAATGGATGTATCTAGCACTAAC 59.071 37.037 0.00 0.00 0.00 2.34
3251 3897 7.928167 CACTCAAATGGATGTATCTAGCACTAA 59.072 37.037 0.00 0.00 0.00 2.24
3252 3898 7.069950 ACACTCAAATGGATGTATCTAGCACTA 59.930 37.037 0.00 0.00 0.00 2.74
3253 3899 6.126940 ACACTCAAATGGATGTATCTAGCACT 60.127 38.462 0.00 0.00 0.00 4.40
3254 3900 6.051717 ACACTCAAATGGATGTATCTAGCAC 58.948 40.000 0.00 0.00 0.00 4.40
3255 3901 6.127083 TGACACTCAAATGGATGTATCTAGCA 60.127 38.462 0.00 0.00 0.00 3.49
3256 3902 6.283694 TGACACTCAAATGGATGTATCTAGC 58.716 40.000 0.00 0.00 0.00 3.42
3257 3903 6.423302 GCTGACACTCAAATGGATGTATCTAG 59.577 42.308 0.00 0.00 0.00 2.43
3258 3904 6.098838 AGCTGACACTCAAATGGATGTATCTA 59.901 38.462 0.00 0.00 0.00 1.98
3259 3905 5.104610 AGCTGACACTCAAATGGATGTATCT 60.105 40.000 0.00 0.00 0.00 1.98
3260 3906 5.121811 AGCTGACACTCAAATGGATGTATC 58.878 41.667 0.00 0.00 0.00 2.24
3261 3907 5.108187 AGCTGACACTCAAATGGATGTAT 57.892 39.130 0.00 0.00 0.00 2.29
3262 3908 4.558226 AGCTGACACTCAAATGGATGTA 57.442 40.909 0.00 0.00 0.00 2.29
3263 3909 3.430042 AGCTGACACTCAAATGGATGT 57.570 42.857 0.00 0.00 0.00 3.06
3264 3910 3.119602 CCAAGCTGACACTCAAATGGATG 60.120 47.826 0.00 0.00 29.82 3.51
3265 3911 3.087031 CCAAGCTGACACTCAAATGGAT 58.913 45.455 0.00 0.00 29.82 3.41
3266 3912 2.507484 CCAAGCTGACACTCAAATGGA 58.493 47.619 0.00 0.00 29.82 3.41
3267 3913 1.542915 CCCAAGCTGACACTCAAATGG 59.457 52.381 0.00 0.00 0.00 3.16
3268 3914 2.227388 GTCCCAAGCTGACACTCAAATG 59.773 50.000 0.00 0.00 32.91 2.32
3269 3915 2.158623 TGTCCCAAGCTGACACTCAAAT 60.159 45.455 1.42 0.00 37.80 2.32
3270 3916 1.211703 TGTCCCAAGCTGACACTCAAA 59.788 47.619 1.42 0.00 37.80 2.69
3271 3917 0.836606 TGTCCCAAGCTGACACTCAA 59.163 50.000 1.42 0.00 37.80 3.02
3272 3918 0.836606 TTGTCCCAAGCTGACACTCA 59.163 50.000 4.94 0.00 42.13 3.41
3273 3919 1.202698 ACTTGTCCCAAGCTGACACTC 60.203 52.381 4.94 0.00 42.13 3.51
3274 3920 0.839946 ACTTGTCCCAAGCTGACACT 59.160 50.000 4.94 0.00 42.13 3.55
3275 3921 1.680338 AACTTGTCCCAAGCTGACAC 58.320 50.000 4.94 0.00 42.13 3.67
3276 3922 2.435372 AAACTTGTCCCAAGCTGACA 57.565 45.000 1.42 1.42 40.80 3.58
3277 3923 3.801114 AAAAACTTGTCCCAAGCTGAC 57.199 42.857 3.96 0.00 0.00 3.51
3294 3940 1.547372 CTACTCCCTCCGTCCGAAAAA 59.453 52.381 0.00 0.00 0.00 1.94
3295 3941 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
3296 3942 0.682209 CCTACTCCCTCCGTCCGAAA 60.682 60.000 0.00 0.00 0.00 3.46
3297 3943 1.077212 CCTACTCCCTCCGTCCGAA 60.077 63.158 0.00 0.00 0.00 4.30
3298 3944 0.982852 TACCTACTCCCTCCGTCCGA 60.983 60.000 0.00 0.00 0.00 4.55
3299 3945 0.817229 GTACCTACTCCCTCCGTCCG 60.817 65.000 0.00 0.00 0.00 4.79
3300 3946 0.467106 GGTACCTACTCCCTCCGTCC 60.467 65.000 4.06 0.00 0.00 4.79
3301 3947 0.257039 TGGTACCTACTCCCTCCGTC 59.743 60.000 14.36 0.00 0.00 4.79
3302 3948 0.706433 TTGGTACCTACTCCCTCCGT 59.294 55.000 14.36 0.00 0.00 4.69
3303 3949 1.755380 CTTTGGTACCTACTCCCTCCG 59.245 57.143 14.36 0.00 0.00 4.63
3304 3950 2.830293 ACTTTGGTACCTACTCCCTCC 58.170 52.381 14.36 0.00 0.00 4.30
3305 3951 5.022122 AGTAACTTTGGTACCTACTCCCTC 58.978 45.833 14.36 0.00 0.00 4.30
3306 3952 4.776308 CAGTAACTTTGGTACCTACTCCCT 59.224 45.833 14.36 0.00 0.00 4.20
3307 3953 4.081254 CCAGTAACTTTGGTACCTACTCCC 60.081 50.000 14.36 0.00 0.00 4.30
3308 3954 4.622457 GCCAGTAACTTTGGTACCTACTCC 60.622 50.000 14.36 2.29 38.02 3.85
3309 3955 4.502016 GCCAGTAACTTTGGTACCTACTC 58.498 47.826 14.36 0.00 38.02 2.59
3310 3956 3.056322 CGCCAGTAACTTTGGTACCTACT 60.056 47.826 14.36 9.12 38.02 2.57
3311 3957 3.256558 CGCCAGTAACTTTGGTACCTAC 58.743 50.000 14.36 6.80 38.02 3.18
3312 3958 2.234414 CCGCCAGTAACTTTGGTACCTA 59.766 50.000 14.36 1.78 38.02 3.08
3313 3959 1.002773 CCGCCAGTAACTTTGGTACCT 59.997 52.381 14.36 0.00 38.02 3.08
3420 4066 2.568956 TGTTAGGACTCATGAAGCTGCT 59.431 45.455 0.00 0.00 0.00 4.24
3462 4108 2.384933 AAAACCTGCTGGATGGGGCA 62.385 55.000 17.64 0.00 37.04 5.36
3624 4281 5.163602 CGTCTCTCCTGTAGAAATAAGCACT 60.164 44.000 0.00 0.00 32.46 4.40
3702 4359 7.505258 AGGAGAGATGCTTAGAGAAATAAACC 58.495 38.462 0.00 0.00 0.00 3.27
3726 4383 4.726416 CTTGTACAATGCAAGGTGCTTAG 58.274 43.478 9.13 4.87 45.31 2.18
3847 4504 0.823356 TTTGAGGCTTGAGGGTGTGC 60.823 55.000 0.00 0.00 0.00 4.57
3851 4508 3.463048 AATGATTTGAGGCTTGAGGGT 57.537 42.857 0.00 0.00 0.00 4.34
4385 5153 5.054477 CGTGATATAGGAAAAATGGACGGT 58.946 41.667 0.00 0.00 0.00 4.83
4774 5544 3.011818 CAGCAGCACATTCCTGTATTCA 58.988 45.455 0.00 0.00 33.14 2.57
5365 6136 2.156504 CGCGCATTCCTAGATCATGAAC 59.843 50.000 8.75 0.00 0.00 3.18
5858 6884 4.556233 GTGGCCTGAAATGGAAGTAAAAC 58.444 43.478 3.32 0.00 0.00 2.43
5905 6931 1.686052 GACAGACTAGCCCATCCTGAG 59.314 57.143 0.00 0.00 0.00 3.35
5926 6952 4.463891 CCAAAGAGTTGCATAACTTGGGAT 59.536 41.667 12.50 0.00 46.79 3.85
5929 6955 4.520492 AGACCAAAGAGTTGCATAACTTGG 59.480 41.667 11.46 11.46 46.79 3.61
5930 6956 5.695851 AGACCAAAGAGTTGCATAACTTG 57.304 39.130 0.00 0.00 46.79 3.16
6094 7120 5.104259 AGAGTAGTAAAAAGGGCAGGATG 57.896 43.478 0.00 0.00 40.87 3.51
6098 7124 6.937392 AGAAGTAGAGTAGTAAAAAGGGCAG 58.063 40.000 0.00 0.00 0.00 4.85
6201 7227 6.258230 TGCATGTGGAGTTCAAATAAGAAG 57.742 37.500 0.00 0.00 0.00 2.85
6214 7240 6.889301 ATAGACCAAATTATGCATGTGGAG 57.111 37.500 20.79 5.68 42.70 3.86
6259 7288 9.669353 GATCACATACACATTCCAACATATTTC 57.331 33.333 0.00 0.00 0.00 2.17
6269 7298 7.699391 CAGACAAAATGATCACATACACATTCC 59.301 37.037 0.00 0.00 35.50 3.01
6301 7330 7.262048 TCAAATTCCGCCCATTATAAAAGAAC 58.738 34.615 0.00 0.00 0.00 3.01
6331 7360 4.694509 GGAGCTAGCACATGAGGATTTATG 59.305 45.833 18.83 0.00 0.00 1.90
6356 7385 8.203485 AGACAAAGATTGCATTTCACCTAAAAA 58.797 29.630 0.00 0.00 0.00 1.94
6629 7661 1.202114 CATTGTACGCAACTGGCCAAT 59.798 47.619 7.01 0.00 40.31 3.16
6630 7662 0.595588 CATTGTACGCAACTGGCCAA 59.404 50.000 7.01 0.00 40.31 4.52
6637 7669 2.241259 ATTGTCGCATTGTACGCAAC 57.759 45.000 0.00 0.00 37.44 4.17
6802 7834 1.763770 CCTGTGCAGGGAAAGTCCT 59.236 57.895 10.28 0.00 44.87 3.85
6852 7884 3.242316 CCTTCTATAACGGCAGAAAACGC 60.242 47.826 0.00 0.00 30.68 4.84
6853 7885 3.242316 GCCTTCTATAACGGCAGAAAACG 60.242 47.826 0.00 0.00 43.25 3.60
6854 7886 3.939592 AGCCTTCTATAACGGCAGAAAAC 59.060 43.478 2.12 0.00 46.14 2.43
6855 7887 4.189231 GAGCCTTCTATAACGGCAGAAAA 58.811 43.478 2.12 0.00 46.14 2.29
6856 7888 3.431766 GGAGCCTTCTATAACGGCAGAAA 60.432 47.826 2.12 0.00 46.14 2.52
6859 7891 1.412710 TGGAGCCTTCTATAACGGCAG 59.587 52.381 2.12 0.00 46.14 4.85
6861 7893 2.417719 CATGGAGCCTTCTATAACGGC 58.582 52.381 0.00 0.00 44.09 5.68
6863 7895 3.574396 TCTCCATGGAGCCTTCTATAACG 59.426 47.826 33.39 9.49 41.71 3.18
6864 7896 5.071115 AGTTCTCCATGGAGCCTTCTATAAC 59.929 44.000 33.39 26.89 41.71 1.89
6865 7897 5.219739 AGTTCTCCATGGAGCCTTCTATAA 58.780 41.667 33.39 18.52 41.71 0.98
6866 7898 4.820775 AGTTCTCCATGGAGCCTTCTATA 58.179 43.478 33.39 13.65 41.71 1.31
6975 8165 3.181471 CGTGAATCTGCTCCATTCTACCT 60.181 47.826 5.00 0.00 32.32 3.08
6978 8168 3.068732 CCTCGTGAATCTGCTCCATTCTA 59.931 47.826 5.00 0.00 32.32 2.10
6987 8177 1.078143 AAGGCCCTCGTGAATCTGC 60.078 57.895 0.00 0.00 0.00 4.26
6988 8178 0.250234 TGAAGGCCCTCGTGAATCTG 59.750 55.000 0.00 0.00 0.00 2.90
7064 8254 5.246203 TCTGTTGTACTGATAGCTGGAACTT 59.754 40.000 0.00 0.00 0.00 2.66
7070 8260 6.567959 TCTTCATCTGTTGTACTGATAGCTG 58.432 40.000 0.00 0.00 35.06 4.24
7122 8312 1.305201 GTCCGACACTTTCTTTGCCA 58.695 50.000 0.00 0.00 0.00 4.92
7185 8375 2.095847 GCGCCGTAACCGATCAACA 61.096 57.895 0.00 0.00 35.63 3.33
7234 8424 0.735632 GACACGCCTCTCTTCTGCAG 60.736 60.000 7.63 7.63 0.00 4.41
7340 8530 1.737838 TTCCTTGGAGCAGCGTAATG 58.262 50.000 0.00 0.00 0.00 1.90
7365 8555 1.523758 AACAGGCGACACTCCATTTC 58.476 50.000 0.00 0.00 0.00 2.17
7378 8571 4.813296 TCGAAAGAGAAGAAAAACAGGC 57.187 40.909 0.00 0.00 34.84 4.85
7397 8590 1.531149 AGGCAAACACATCGACTTTCG 59.469 47.619 0.00 0.00 42.10 3.46
7428 8621 6.346518 CGATTTAAACACAAAATTGCACCCTC 60.347 38.462 0.00 0.00 0.00 4.30
7458 8655 0.249953 TGGCCTGAAAAGTCGCGTAA 60.250 50.000 5.77 0.00 0.00 3.18
7460 8657 0.889186 AATGGCCTGAAAAGTCGCGT 60.889 50.000 5.77 0.00 0.00 6.01
7545 8757 4.401519 AGACATGGATGGATTGCTTTCTTG 59.598 41.667 0.00 0.00 0.00 3.02
7576 9017 5.741982 ACATAACAGTCGAACAAAACAAAGC 59.258 36.000 0.00 0.00 0.00 3.51
7647 9123 0.025898 GAATTACTCGCCGCGGAAAC 59.974 55.000 33.48 10.82 0.00 2.78
7652 9128 1.226859 TCCAGAATTACTCGCCGCG 60.227 57.895 6.39 6.39 0.00 6.46
7656 9132 1.536284 CCTCCGTCCAGAATTACTCGC 60.536 57.143 0.00 0.00 0.00 5.03
7678 9155 9.959749 TTCAGTTTCACAACTCAAAATTATACC 57.040 29.630 0.00 0.00 41.69 2.73
7866 9799 0.552363 CCATCCATCCATCACCACCA 59.448 55.000 0.00 0.00 0.00 4.17
7872 9805 2.310647 CCATCCATCCATCCATCCATCA 59.689 50.000 0.00 0.00 0.00 3.07
7903 9867 1.618640 GCCAGCGAGTCGTCTTCAAC 61.619 60.000 15.08 0.00 0.00 3.18
7963 9938 2.422591 GCAGCAGGCCAAAGCAAA 59.577 55.556 5.01 0.00 42.56 3.68
7980 9955 0.604511 AGCCGTCAAACTAAACCGGG 60.605 55.000 6.32 0.00 39.05 5.73
7981 9956 0.794473 GAGCCGTCAAACTAAACCGG 59.206 55.000 0.00 0.00 41.50 5.28
7995 9970 1.080298 AGGAACGTTAACGGAGCCG 60.080 57.895 29.81 7.48 44.95 5.52
7996 9971 1.632948 GCAGGAACGTTAACGGAGCC 61.633 60.000 29.81 24.92 44.95 4.70
7997 9972 1.632948 GGCAGGAACGTTAACGGAGC 61.633 60.000 29.81 22.88 44.95 4.70
7998 9973 0.037605 AGGCAGGAACGTTAACGGAG 60.038 55.000 29.81 15.75 44.95 4.63
7999 9974 0.037975 GAGGCAGGAACGTTAACGGA 60.038 55.000 29.81 0.00 44.95 4.69
8000 9975 0.037605 AGAGGCAGGAACGTTAACGG 60.038 55.000 29.81 13.99 44.95 4.44
8001 9976 1.068474 CAGAGGCAGGAACGTTAACG 58.932 55.000 25.68 25.68 46.33 3.18
8002 9977 0.796927 GCAGAGGCAGGAACGTTAAC 59.203 55.000 0.00 0.00 40.72 2.01
8003 9978 3.226884 GCAGAGGCAGGAACGTTAA 57.773 52.632 0.00 0.00 40.72 2.01
8014 9989 2.555757 AGTCAAATTCTTGTGCAGAGGC 59.444 45.455 0.00 0.00 41.68 4.70
8016 9991 6.069684 AGAAAGTCAAATTCTTGTGCAGAG 57.930 37.500 0.00 0.00 33.41 3.35
8019 9994 6.319658 AGAGAAGAAAGTCAAATTCTTGTGCA 59.680 34.615 6.27 0.00 44.81 4.57
8031 10006 3.897239 TGGCCAAAAGAGAAGAAAGTCA 58.103 40.909 0.61 0.00 0.00 3.41
8032 10007 4.580580 TCTTGGCCAAAAGAGAAGAAAGTC 59.419 41.667 20.91 0.00 32.42 3.01
8033 10008 4.536765 TCTTGGCCAAAAGAGAAGAAAGT 58.463 39.130 20.91 0.00 32.42 2.66
8034 10009 5.520376 TTCTTGGCCAAAAGAGAAGAAAG 57.480 39.130 20.91 2.69 37.48 2.62
8035 10010 4.202151 GCTTCTTGGCCAAAAGAGAAGAAA 60.202 41.667 34.23 10.49 44.90 2.52
8036 10011 3.319122 GCTTCTTGGCCAAAAGAGAAGAA 59.681 43.478 34.23 24.24 44.90 2.52
8037 10012 2.887152 GCTTCTTGGCCAAAAGAGAAGA 59.113 45.455 34.23 19.73 44.90 2.87
8038 10013 2.624838 TGCTTCTTGGCCAAAAGAGAAG 59.375 45.455 29.16 29.16 44.89 2.85
8043 10018 0.390124 TGCTGCTTCTTGGCCAAAAG 59.610 50.000 20.91 23.20 0.00 2.27
8045 10020 2.043625 CTGCTGCTTCTTGGCCAAA 58.956 52.632 20.91 4.42 0.00 3.28
8051 10026 1.210413 CTGCTGCTGCTGCTTCTTG 59.790 57.895 27.67 11.95 40.48 3.02
8061 10036 3.058708 TCGTTTCAATTCTTCTGCTGCTG 60.059 43.478 0.00 0.00 0.00 4.41
8064 10039 4.437930 GGGATCGTTTCAATTCTTCTGCTG 60.438 45.833 0.00 0.00 0.00 4.41
8065 10040 3.691609 GGGATCGTTTCAATTCTTCTGCT 59.308 43.478 0.00 0.00 0.00 4.24
8066 10041 3.485877 CGGGATCGTTTCAATTCTTCTGC 60.486 47.826 0.00 0.00 0.00 4.26
8067 10042 4.264543 CGGGATCGTTTCAATTCTTCTG 57.735 45.455 0.00 0.00 0.00 3.02
8081 10056 0.953471 TGCCTTGTTTCACGGGATCG 60.953 55.000 0.00 0.00 43.02 3.69
8082 10057 1.463674 ATGCCTTGTTTCACGGGATC 58.536 50.000 0.00 0.00 28.58 3.36
8083 10058 1.923356 AATGCCTTGTTTCACGGGAT 58.077 45.000 0.00 0.00 35.55 3.85
8084 10059 2.224670 ACTAATGCCTTGTTTCACGGGA 60.225 45.455 0.00 0.00 0.00 5.14
8085 10060 2.095263 CACTAATGCCTTGTTTCACGGG 60.095 50.000 0.00 0.00 0.00 5.28
8086 10061 2.552315 ACACTAATGCCTTGTTTCACGG 59.448 45.455 0.00 0.00 0.00 4.94
8087 10062 3.554524 CACACTAATGCCTTGTTTCACG 58.445 45.455 0.00 0.00 0.00 4.35
8088 10063 3.317993 ACCACACTAATGCCTTGTTTCAC 59.682 43.478 0.00 0.00 0.00 3.18
8089 10064 3.317711 CACCACACTAATGCCTTGTTTCA 59.682 43.478 0.00 0.00 0.00 2.69
8090 10065 3.305335 CCACCACACTAATGCCTTGTTTC 60.305 47.826 0.00 0.00 0.00 2.78
8091 10066 2.627699 CCACCACACTAATGCCTTGTTT 59.372 45.455 0.00 0.00 0.00 2.83
8092 10067 2.238521 CCACCACACTAATGCCTTGTT 58.761 47.619 0.00 0.00 0.00 2.83
8093 10068 1.547675 CCCACCACACTAATGCCTTGT 60.548 52.381 0.00 0.00 0.00 3.16
8094 10069 1.176527 CCCACCACACTAATGCCTTG 58.823 55.000 0.00 0.00 0.00 3.61
8095 10070 0.611896 GCCCACCACACTAATGCCTT 60.612 55.000 0.00 0.00 0.00 4.35
8096 10071 1.000896 GCCCACCACACTAATGCCT 60.001 57.895 0.00 0.00 0.00 4.75
8097 10072 1.000896 AGCCCACCACACTAATGCC 60.001 57.895 0.00 0.00 0.00 4.40
8098 10073 1.315257 CCAGCCCACCACACTAATGC 61.315 60.000 0.00 0.00 0.00 3.56
8099 10074 1.315257 GCCAGCCCACCACACTAATG 61.315 60.000 0.00 0.00 0.00 1.90
8100 10075 1.000896 GCCAGCCCACCACACTAAT 60.001 57.895 0.00 0.00 0.00 1.73
8101 10076 2.434331 GCCAGCCCACCACACTAA 59.566 61.111 0.00 0.00 0.00 2.24
8102 10077 3.646715 GGCCAGCCCACCACACTA 61.647 66.667 0.00 0.00 0.00 2.74
8109 10084 4.329545 TGAACGAGGCCAGCCCAC 62.330 66.667 5.01 0.00 36.58 4.61
8110 10085 4.020617 CTGAACGAGGCCAGCCCA 62.021 66.667 5.01 0.00 36.58 5.36
8111 10086 2.543067 AATCTGAACGAGGCCAGCCC 62.543 60.000 5.01 0.00 36.58 5.19
8112 10087 1.078143 AATCTGAACGAGGCCAGCC 60.078 57.895 5.01 0.00 0.00 4.85
8113 10088 1.424493 CGAATCTGAACGAGGCCAGC 61.424 60.000 5.01 0.00 0.00 4.85
8114 10089 0.807667 CCGAATCTGAACGAGGCCAG 60.808 60.000 5.01 0.00 0.00 4.85
8115 10090 1.218047 CCGAATCTGAACGAGGCCA 59.782 57.895 5.01 0.00 0.00 5.36
8116 10091 0.391263 AACCGAATCTGAACGAGGCC 60.391 55.000 0.00 0.00 0.00 5.19
8117 10092 1.000145 GAACCGAATCTGAACGAGGC 59.000 55.000 8.69 0.00 0.00 4.70
8118 10093 1.067142 TGGAACCGAATCTGAACGAGG 60.067 52.381 8.69 0.89 0.00 4.63
8119 10094 2.363788 TGGAACCGAATCTGAACGAG 57.636 50.000 8.69 3.19 0.00 4.18
8120 10095 2.232696 TGATGGAACCGAATCTGAACGA 59.767 45.455 8.69 0.00 0.00 3.85
8121 10096 2.616960 TGATGGAACCGAATCTGAACG 58.383 47.619 0.00 1.67 0.00 3.95
8122 10097 3.181520 CGTTGATGGAACCGAATCTGAAC 60.182 47.826 0.00 0.00 0.00 3.18
8123 10098 3.000041 CGTTGATGGAACCGAATCTGAA 59.000 45.455 0.00 0.00 0.00 3.02
8124 10099 2.232696 TCGTTGATGGAACCGAATCTGA 59.767 45.455 0.00 0.00 0.00 3.27
8125 10100 2.348666 GTCGTTGATGGAACCGAATCTG 59.651 50.000 0.00 0.00 0.00 2.90
8126 10101 2.618053 GTCGTTGATGGAACCGAATCT 58.382 47.619 0.00 0.00 0.00 2.40
8127 10102 1.664151 GGTCGTTGATGGAACCGAATC 59.336 52.381 0.00 0.00 0.00 2.52
8128 10103 1.278127 AGGTCGTTGATGGAACCGAAT 59.722 47.619 0.00 0.00 0.00 3.34
8129 10104 0.682852 AGGTCGTTGATGGAACCGAA 59.317 50.000 0.00 0.00 0.00 4.30
8130 10105 0.245539 GAGGTCGTTGATGGAACCGA 59.754 55.000 0.00 0.00 0.00 4.69
8131 10106 1.076533 CGAGGTCGTTGATGGAACCG 61.077 60.000 0.00 0.00 34.11 4.44
8132 10107 2.750815 CGAGGTCGTTGATGGAACC 58.249 57.895 0.00 0.00 34.11 3.62
8150 10125 3.119849 AGTCATTATTGGCGTGAAAGCAC 60.120 43.478 0.00 0.00 41.67 4.40
8151 10126 3.081061 AGTCATTATTGGCGTGAAAGCA 58.919 40.909 0.00 0.00 39.27 3.91
8152 10127 3.764885 AGTCATTATTGGCGTGAAAGC 57.235 42.857 0.00 0.00 30.85 3.51
8154 10129 9.719355 ACATATATAGTCATTATTGGCGTGAAA 57.281 29.630 0.00 0.00 30.85 2.69
8193 10168 9.421806 CAAAATCAAGCCACTAATGTAATTGAA 57.578 29.630 0.00 0.00 36.99 2.69
8194 10169 8.801299 TCAAAATCAAGCCACTAATGTAATTGA 58.199 29.630 0.00 0.00 36.99 2.57
8195 10170 8.984891 TCAAAATCAAGCCACTAATGTAATTG 57.015 30.769 0.00 0.00 36.99 2.32
8196 10171 9.023962 TCTCAAAATCAAGCCACTAATGTAATT 57.976 29.630 0.00 0.00 41.28 1.40
8197 10172 8.579850 TCTCAAAATCAAGCCACTAATGTAAT 57.420 30.769 0.00 0.00 0.00 1.89
8198 10173 7.994425 TCTCAAAATCAAGCCACTAATGTAA 57.006 32.000 0.00 0.00 0.00 2.41
8199 10174 8.461222 CAATCTCAAAATCAAGCCACTAATGTA 58.539 33.333 0.00 0.00 0.00 2.29
8200 10175 7.177216 TCAATCTCAAAATCAAGCCACTAATGT 59.823 33.333 0.00 0.00 0.00 2.71
8201 10176 7.541162 TCAATCTCAAAATCAAGCCACTAATG 58.459 34.615 0.00 0.00 0.00 1.90
8202 10177 7.707624 TCAATCTCAAAATCAAGCCACTAAT 57.292 32.000 0.00 0.00 0.00 1.73
8203 10178 7.707624 ATCAATCTCAAAATCAAGCCACTAA 57.292 32.000 0.00 0.00 0.00 2.24
8204 10179 7.707624 AATCAATCTCAAAATCAAGCCACTA 57.292 32.000 0.00 0.00 0.00 2.74
8205 10180 6.600882 AATCAATCTCAAAATCAAGCCACT 57.399 33.333 0.00 0.00 0.00 4.00
8206 10181 7.009907 GCTAAATCAATCTCAAAATCAAGCCAC 59.990 37.037 0.00 0.00 0.00 5.01
8207 10182 7.037438 GCTAAATCAATCTCAAAATCAAGCCA 58.963 34.615 0.00 0.00 0.00 4.75
8208 10183 6.197842 CGCTAAATCAATCTCAAAATCAAGCC 59.802 38.462 0.00 0.00 0.00 4.35
8209 10184 6.968904 TCGCTAAATCAATCTCAAAATCAAGC 59.031 34.615 0.00 0.00 0.00 4.01
8210 10185 8.955002 CATCGCTAAATCAATCTCAAAATCAAG 58.045 33.333 0.00 0.00 0.00 3.02
8211 10186 7.916977 CCATCGCTAAATCAATCTCAAAATCAA 59.083 33.333 0.00 0.00 0.00 2.57
8212 10187 7.420002 CCATCGCTAAATCAATCTCAAAATCA 58.580 34.615 0.00 0.00 0.00 2.57
8213 10188 6.860023 CCCATCGCTAAATCAATCTCAAAATC 59.140 38.462 0.00 0.00 0.00 2.17
8214 10189 6.322201 ACCCATCGCTAAATCAATCTCAAAAT 59.678 34.615 0.00 0.00 0.00 1.82
8215 10190 5.652014 ACCCATCGCTAAATCAATCTCAAAA 59.348 36.000 0.00 0.00 0.00 2.44
8216 10191 5.192927 ACCCATCGCTAAATCAATCTCAAA 58.807 37.500 0.00 0.00 0.00 2.69
8217 10192 4.780815 ACCCATCGCTAAATCAATCTCAA 58.219 39.130 0.00 0.00 0.00 3.02
8218 10193 4.422073 ACCCATCGCTAAATCAATCTCA 57.578 40.909 0.00 0.00 0.00 3.27
8219 10194 5.757850 AAACCCATCGCTAAATCAATCTC 57.242 39.130 0.00 0.00 0.00 2.75
8220 10195 5.652014 TGAAAACCCATCGCTAAATCAATCT 59.348 36.000 0.00 0.00 0.00 2.40
8221 10196 5.890334 TGAAAACCCATCGCTAAATCAATC 58.110 37.500 0.00 0.00 0.00 2.67
8222 10197 5.913137 TGAAAACCCATCGCTAAATCAAT 57.087 34.783 0.00 0.00 0.00 2.57
8223 10198 5.713792 TTGAAAACCCATCGCTAAATCAA 57.286 34.783 0.00 0.00 0.00 2.57
8224 10199 5.713792 TTTGAAAACCCATCGCTAAATCA 57.286 34.783 0.00 0.00 0.00 2.57
8225 10200 6.329496 TCATTTGAAAACCCATCGCTAAATC 58.671 36.000 0.00 0.00 0.00 2.17
8226 10201 6.279513 TCATTTGAAAACCCATCGCTAAAT 57.720 33.333 0.00 0.00 0.00 1.40
8227 10202 5.713792 TCATTTGAAAACCCATCGCTAAA 57.286 34.783 0.00 0.00 0.00 1.85
8228 10203 5.913137 ATCATTTGAAAACCCATCGCTAA 57.087 34.783 0.00 0.00 0.00 3.09
8229 10204 5.913137 AATCATTTGAAAACCCATCGCTA 57.087 34.783 0.00 0.00 0.00 4.26
8230 10205 4.806640 AATCATTTGAAAACCCATCGCT 57.193 36.364 0.00 0.00 0.00 4.93
8231 10206 5.861222 AAAATCATTTGAAAACCCATCGC 57.139 34.783 0.00 0.00 0.00 4.58
8232 10207 6.079120 GCAAAAATCATTTGAAAACCCATCG 58.921 36.000 5.17 0.00 0.00 3.84
8233 10208 6.857451 GTGCAAAAATCATTTGAAAACCCATC 59.143 34.615 5.17 0.00 0.00 3.51
8234 10209 6.238981 GGTGCAAAAATCATTTGAAAACCCAT 60.239 34.615 5.17 0.00 0.00 4.00
8235 10210 5.067023 GGTGCAAAAATCATTTGAAAACCCA 59.933 36.000 5.17 0.00 0.00 4.51
8236 10211 5.067023 TGGTGCAAAAATCATTTGAAAACCC 59.933 36.000 5.17 0.00 32.61 4.11
8237 10212 6.129053 TGGTGCAAAAATCATTTGAAAACC 57.871 33.333 5.17 8.76 33.42 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.