Multiple sequence alignment - TraesCS4B01G022100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G022100 chr4B 100.000 3409 0 0 1 3409 15939795 15936387 0.000000e+00 6296
1 TraesCS4B01G022100 chr4B 98.438 448 5 1 1 446 15968928 15968481 0.000000e+00 787
2 TraesCS4B01G022100 chr4B 98.438 448 5 1 1 446 16027349 16026902 0.000000e+00 787
3 TraesCS4B01G022100 chr4B 98.214 448 6 1 1 446 15998151 15997704 0.000000e+00 782
4 TraesCS4B01G022100 chr5B 98.418 2970 40 2 447 3409 513600268 513603237 0.000000e+00 5217
5 TraesCS4B01G022100 chr5B 93.049 446 29 2 1 446 447171921 447171478 0.000000e+00 651
6 TraesCS4B01G022100 chr7B 98.249 2970 40 4 447 3409 245984002 245986966 0.000000e+00 5186
7 TraesCS4B01G022100 chr7B 98.087 2980 38 5 446 3409 446152840 446155816 0.000000e+00 5169
8 TraesCS4B01G022100 chr7B 97.717 2978 50 5 441 3409 156960747 156963715 0.000000e+00 5107
9 TraesCS4B01G022100 chr7B 97.645 2973 57 5 447 3409 582235322 582238291 0.000000e+00 5090
10 TraesCS4B01G022100 chr7B 98.385 2787 35 3 630 3409 446171847 446174630 0.000000e+00 4889
11 TraesCS4B01G022100 chr7B 92.601 446 31 2 1 446 7025428 7024985 1.030000e-179 640
12 TraesCS4B01G022100 chr4A 97.919 2979 46 3 447 3409 535873667 535870689 0.000000e+00 5144
13 TraesCS4B01G022100 chr2A 97.749 2977 57 3 440 3409 568410556 568407583 0.000000e+00 5118
14 TraesCS4B01G022100 chr2B 97.156 2989 43 5 447 3409 49092676 49095648 0.000000e+00 5011
15 TraesCS4B01G022100 chr2B 97.012 2979 48 8 447 3409 338772765 338769812 0.000000e+00 4970
16 TraesCS4B01G022100 chr7D 93.274 446 28 2 1 446 537264079 537263636 0.000000e+00 656
17 TraesCS4B01G022100 chr7A 92.601 446 31 2 1 446 25412270 25412713 1.030000e-179 640
18 TraesCS4B01G022100 chr2D 92.394 447 32 2 1 447 44374892 44374448 1.330000e-178 636
19 TraesCS4B01G022100 chr1D 92.170 447 33 2 1 447 396115227 396114783 6.210000e-177 630


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G022100 chr4B 15936387 15939795 3408 True 6296 6296 100.000 1 3409 1 chr4B.!!$R1 3408
1 TraesCS4B01G022100 chr5B 513600268 513603237 2969 False 5217 5217 98.418 447 3409 1 chr5B.!!$F1 2962
2 TraesCS4B01G022100 chr7B 245984002 245986966 2964 False 5186 5186 98.249 447 3409 1 chr7B.!!$F2 2962
3 TraesCS4B01G022100 chr7B 446152840 446155816 2976 False 5169 5169 98.087 446 3409 1 chr7B.!!$F3 2963
4 TraesCS4B01G022100 chr7B 156960747 156963715 2968 False 5107 5107 97.717 441 3409 1 chr7B.!!$F1 2968
5 TraesCS4B01G022100 chr7B 582235322 582238291 2969 False 5090 5090 97.645 447 3409 1 chr7B.!!$F5 2962
6 TraesCS4B01G022100 chr7B 446171847 446174630 2783 False 4889 4889 98.385 630 3409 1 chr7B.!!$F4 2779
7 TraesCS4B01G022100 chr4A 535870689 535873667 2978 True 5144 5144 97.919 447 3409 1 chr4A.!!$R1 2962
8 TraesCS4B01G022100 chr2A 568407583 568410556 2973 True 5118 5118 97.749 440 3409 1 chr2A.!!$R1 2969
9 TraesCS4B01G022100 chr2B 49092676 49095648 2972 False 5011 5011 97.156 447 3409 1 chr2B.!!$F1 2962
10 TraesCS4B01G022100 chr2B 338769812 338772765 2953 True 4970 4970 97.012 447 3409 1 chr2B.!!$R1 2962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 891 0.037139 CTCTTCTCTGCTGCTGCTGT 60.037 55.0 17.0 0.0 40.48 4.40 F
1595 1663 0.246635 GCTAAGCTGGAGGTTCGTCA 59.753 55.0 0.0 0.0 37.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2364 2432 1.654954 CCAGAGTCCCCGTACGACAG 61.655 65.0 18.76 4.76 32.41 3.51 R
2724 2796 1.989706 CCTTTCGAAACAAAGGGGGA 58.010 50.0 6.47 0.00 46.21 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.597167 TCTGATTTATCCAGTAATCTATGTGGG 58.403 37.037 0.00 0.00 33.08 4.61
27 28 7.689299 TGATTTATCCAGTAATCTATGTGGGG 58.311 38.462 0.00 0.00 33.08 4.96
28 29 7.515861 TGATTTATCCAGTAATCTATGTGGGGA 59.484 37.037 0.00 0.00 33.08 4.81
29 30 6.681729 TTATCCAGTAATCTATGTGGGGAC 57.318 41.667 0.00 0.00 0.00 4.46
30 31 4.280789 TCCAGTAATCTATGTGGGGACT 57.719 45.455 0.00 0.00 0.00 3.85
31 32 3.967326 TCCAGTAATCTATGTGGGGACTG 59.033 47.826 0.00 0.00 34.07 3.51
32 33 3.711704 CCAGTAATCTATGTGGGGACTGT 59.288 47.826 0.00 0.00 32.73 3.55
33 34 4.164221 CCAGTAATCTATGTGGGGACTGTT 59.836 45.833 0.00 0.00 32.73 3.16
34 35 5.360591 CAGTAATCTATGTGGGGACTGTTC 58.639 45.833 0.00 0.00 0.00 3.18
35 36 5.030147 AGTAATCTATGTGGGGACTGTTCA 58.970 41.667 0.00 0.00 0.00 3.18
36 37 4.927267 AATCTATGTGGGGACTGTTCAA 57.073 40.909 0.00 0.00 0.00 2.69
37 38 3.981071 TCTATGTGGGGACTGTTCAAG 57.019 47.619 0.00 0.00 0.00 3.02
38 39 2.027192 TCTATGTGGGGACTGTTCAAGC 60.027 50.000 0.00 0.00 0.00 4.01
39 40 0.773644 ATGTGGGGACTGTTCAAGCT 59.226 50.000 0.00 0.00 0.00 3.74
40 41 1.429930 TGTGGGGACTGTTCAAGCTA 58.570 50.000 0.00 0.00 0.00 3.32
41 42 1.771854 TGTGGGGACTGTTCAAGCTAA 59.228 47.619 0.00 0.00 0.00 3.09
42 43 2.152016 GTGGGGACTGTTCAAGCTAAC 58.848 52.381 0.00 0.00 0.00 2.34
43 44 2.054799 TGGGGACTGTTCAAGCTAACT 58.945 47.619 1.29 0.00 0.00 2.24
44 45 2.038557 TGGGGACTGTTCAAGCTAACTC 59.961 50.000 1.29 0.00 0.00 3.01
45 46 2.038557 GGGGACTGTTCAAGCTAACTCA 59.961 50.000 1.29 0.00 0.00 3.41
46 47 3.330267 GGGACTGTTCAAGCTAACTCAG 58.670 50.000 1.29 4.58 0.00 3.35
78 79 9.799106 CTTTAATCCAATTATAGATGACCTGGT 57.201 33.333 0.00 0.00 0.00 4.00
81 82 6.360370 TCCAATTATAGATGACCTGGTAGC 57.640 41.667 0.00 0.00 0.00 3.58
82 83 5.248477 TCCAATTATAGATGACCTGGTAGCC 59.752 44.000 0.00 0.00 0.00 3.93
83 84 5.249393 CCAATTATAGATGACCTGGTAGCCT 59.751 44.000 0.00 0.00 0.00 4.58
84 85 6.240002 CCAATTATAGATGACCTGGTAGCCTT 60.240 42.308 0.00 0.00 0.00 4.35
85 86 7.038302 CCAATTATAGATGACCTGGTAGCCTTA 60.038 40.741 0.00 0.00 0.00 2.69
86 87 8.543774 CAATTATAGATGACCTGGTAGCCTTAT 58.456 37.037 0.00 0.00 0.00 1.73
87 88 9.784376 AATTATAGATGACCTGGTAGCCTTATA 57.216 33.333 0.00 0.00 0.00 0.98
88 89 9.959693 ATTATAGATGACCTGGTAGCCTTATAT 57.040 33.333 0.00 0.00 0.00 0.86
91 92 9.784376 ATAGATGACCTGGTAGCCTTATATAAA 57.216 33.333 0.00 0.00 0.00 1.40
92 93 8.686739 AGATGACCTGGTAGCCTTATATAAAT 57.313 34.615 0.00 0.00 0.00 1.40
93 94 9.117223 AGATGACCTGGTAGCCTTATATAAATT 57.883 33.333 0.00 0.00 0.00 1.82
94 95 9.740710 GATGACCTGGTAGCCTTATATAAATTT 57.259 33.333 0.00 0.00 0.00 1.82
96 97 9.569122 TGACCTGGTAGCCTTATATAAATTTTC 57.431 33.333 0.00 0.00 0.00 2.29
97 98 9.569122 GACCTGGTAGCCTTATATAAATTTTCA 57.431 33.333 0.00 0.00 0.00 2.69
116 117 9.434420 AATTTTCATGTTGTGAAGAAAGTTTCA 57.566 25.926 17.65 0.00 46.85 2.69
117 118 8.824159 TTTTCATGTTGTGAAGAAAGTTTCAA 57.176 26.923 17.65 0.73 46.85 2.69
118 119 8.824159 TTTCATGTTGTGAAGAAAGTTTCAAA 57.176 26.923 17.65 2.44 46.85 2.69
119 120 7.810766 TCATGTTGTGAAGAAAGTTTCAAAC 57.189 32.000 17.65 12.07 38.69 2.93
120 121 7.374272 TCATGTTGTGAAGAAAGTTTCAAACA 58.626 30.769 17.65 16.77 39.46 2.83
121 122 7.541783 TCATGTTGTGAAGAAAGTTTCAAACAG 59.458 33.333 17.65 11.77 39.06 3.16
122 123 5.633182 TGTTGTGAAGAAAGTTTCAAACAGC 59.367 36.000 17.65 17.53 38.69 4.40
123 124 5.643379 TGTGAAGAAAGTTTCAAACAGCT 57.357 34.783 17.65 0.00 38.69 4.24
124 125 6.751514 TGTGAAGAAAGTTTCAAACAGCTA 57.248 33.333 17.65 2.62 38.69 3.32
125 126 7.151999 TGTGAAGAAAGTTTCAAACAGCTAA 57.848 32.000 17.65 0.00 38.69 3.09
126 127 7.771183 TGTGAAGAAAGTTTCAAACAGCTAAT 58.229 30.769 17.65 0.00 38.69 1.73
127 128 8.250332 TGTGAAGAAAGTTTCAAACAGCTAATT 58.750 29.630 17.65 0.00 38.69 1.40
128 129 9.087424 GTGAAGAAAGTTTCAAACAGCTAATTT 57.913 29.630 17.65 0.00 38.69 1.82
140 141 8.591312 TCAAACAGCTAATTTAATATTTTGCGC 58.409 29.630 0.00 0.00 0.00 6.09
141 142 8.379161 CAAACAGCTAATTTAATATTTTGCGCA 58.621 29.630 5.66 5.66 0.00 6.09
142 143 7.684062 ACAGCTAATTTAATATTTTGCGCAG 57.316 32.000 11.31 0.00 0.00 5.18
143 144 7.479980 ACAGCTAATTTAATATTTTGCGCAGA 58.520 30.769 11.31 2.14 0.00 4.26
144 145 7.645340 ACAGCTAATTTAATATTTTGCGCAGAG 59.355 33.333 11.31 0.00 0.00 3.35
145 146 7.857389 CAGCTAATTTAATATTTTGCGCAGAGA 59.143 33.333 11.31 0.68 0.00 3.10
146 147 7.857885 AGCTAATTTAATATTTTGCGCAGAGAC 59.142 33.333 11.31 0.00 0.00 3.36
147 148 7.643764 GCTAATTTAATATTTTGCGCAGAGACA 59.356 33.333 11.31 0.00 0.00 3.41
148 149 9.669353 CTAATTTAATATTTTGCGCAGAGACAT 57.331 29.630 11.31 0.00 0.00 3.06
149 150 8.566008 AATTTAATATTTTGCGCAGAGACATC 57.434 30.769 11.31 0.00 0.00 3.06
150 151 6.676237 TTAATATTTTGCGCAGAGACATCA 57.324 33.333 11.31 0.00 0.00 3.07
151 152 4.808077 ATATTTTGCGCAGAGACATCAG 57.192 40.909 11.31 0.00 0.00 2.90
152 153 1.159285 TTTTGCGCAGAGACATCAGG 58.841 50.000 11.31 0.00 0.00 3.86
153 154 1.300971 TTTGCGCAGAGACATCAGGC 61.301 55.000 11.31 0.00 0.00 4.85
154 155 2.176314 TTGCGCAGAGACATCAGGCT 62.176 55.000 11.31 0.00 0.00 4.58
155 156 1.322538 TGCGCAGAGACATCAGGCTA 61.323 55.000 5.66 0.00 0.00 3.93
156 157 0.597118 GCGCAGAGACATCAGGCTAG 60.597 60.000 0.30 0.00 0.00 3.42
157 158 0.597118 CGCAGAGACATCAGGCTAGC 60.597 60.000 6.04 6.04 0.00 3.42
158 159 0.752054 GCAGAGACATCAGGCTAGCT 59.248 55.000 15.72 0.00 0.00 3.32
159 160 1.538634 GCAGAGACATCAGGCTAGCTG 60.539 57.143 15.72 10.96 0.00 4.24
160 161 2.030371 CAGAGACATCAGGCTAGCTGA 58.970 52.381 15.72 15.88 35.13 4.26
161 162 2.429971 CAGAGACATCAGGCTAGCTGAA 59.570 50.000 15.72 0.00 34.26 3.02
162 163 3.102972 AGAGACATCAGGCTAGCTGAAA 58.897 45.455 15.72 0.00 34.26 2.69
163 164 3.118811 AGAGACATCAGGCTAGCTGAAAC 60.119 47.826 15.72 11.04 34.26 2.78
164 165 2.093235 AGACATCAGGCTAGCTGAAACC 60.093 50.000 15.72 9.05 34.26 3.27
165 166 1.630369 ACATCAGGCTAGCTGAAACCA 59.370 47.619 15.72 0.00 34.26 3.67
166 167 2.040278 ACATCAGGCTAGCTGAAACCAA 59.960 45.455 15.72 0.00 34.26 3.67
167 168 2.949177 TCAGGCTAGCTGAAACCAAA 57.051 45.000 15.72 0.00 0.00 3.28
168 169 2.783135 TCAGGCTAGCTGAAACCAAAG 58.217 47.619 15.72 0.00 0.00 2.77
169 170 1.200948 CAGGCTAGCTGAAACCAAAGC 59.799 52.381 15.72 0.00 39.82 3.51
170 171 1.202927 AGGCTAGCTGAAACCAAAGCA 60.203 47.619 15.72 0.00 42.06 3.91
171 172 1.613437 GGCTAGCTGAAACCAAAGCAA 59.387 47.619 15.72 0.00 42.06 3.91
172 173 2.035832 GGCTAGCTGAAACCAAAGCAAA 59.964 45.455 15.72 0.00 42.06 3.68
173 174 3.311966 GCTAGCTGAAACCAAAGCAAAG 58.688 45.455 7.70 0.00 42.06 2.77
174 175 3.243535 GCTAGCTGAAACCAAAGCAAAGT 60.244 43.478 7.70 0.00 42.06 2.66
175 176 3.169355 AGCTGAAACCAAAGCAAAGTG 57.831 42.857 0.00 0.00 42.06 3.16
176 177 2.760092 AGCTGAAACCAAAGCAAAGTGA 59.240 40.909 0.00 0.00 42.06 3.41
177 178 3.195396 AGCTGAAACCAAAGCAAAGTGAA 59.805 39.130 0.00 0.00 42.06 3.18
178 179 3.306973 GCTGAAACCAAAGCAAAGTGAAC 59.693 43.478 0.00 0.00 39.31 3.18
179 180 4.493547 CTGAAACCAAAGCAAAGTGAACA 58.506 39.130 0.00 0.00 0.00 3.18
180 181 4.241681 TGAAACCAAAGCAAAGTGAACAC 58.758 39.130 0.00 0.00 0.00 3.32
181 182 2.559998 ACCAAAGCAAAGTGAACACG 57.440 45.000 0.00 0.00 36.20 4.49
182 183 1.134175 ACCAAAGCAAAGTGAACACGG 59.866 47.619 0.00 0.00 36.20 4.94
183 184 1.134175 CCAAAGCAAAGTGAACACGGT 59.866 47.619 0.00 0.00 36.20 4.83
184 185 2.184448 CAAAGCAAAGTGAACACGGTG 58.816 47.619 6.58 6.58 36.20 4.94
185 186 1.745232 AAGCAAAGTGAACACGGTGA 58.255 45.000 16.29 0.00 36.20 4.02
186 187 1.967319 AGCAAAGTGAACACGGTGAT 58.033 45.000 16.29 1.98 36.20 3.06
187 188 1.603802 AGCAAAGTGAACACGGTGATG 59.396 47.619 16.29 3.43 36.20 3.07
188 189 1.334960 GCAAAGTGAACACGGTGATGG 60.335 52.381 16.29 0.00 36.20 3.51
189 190 1.946768 CAAAGTGAACACGGTGATGGT 59.053 47.619 16.29 0.00 36.20 3.55
190 191 1.878953 AAGTGAACACGGTGATGGTC 58.121 50.000 16.29 6.99 36.79 4.02
191 192 0.756294 AGTGAACACGGTGATGGTCA 59.244 50.000 16.29 9.41 44.10 4.02
194 195 3.686916 TGAACACGGTGATGGTCATAA 57.313 42.857 16.29 0.00 41.43 1.90
195 196 3.595173 TGAACACGGTGATGGTCATAAG 58.405 45.455 16.29 0.00 41.43 1.73
196 197 3.007506 TGAACACGGTGATGGTCATAAGT 59.992 43.478 16.29 0.00 41.43 2.24
197 198 3.247006 ACACGGTGATGGTCATAAGTC 57.753 47.619 16.29 0.00 0.00 3.01
198 199 2.832129 ACACGGTGATGGTCATAAGTCT 59.168 45.455 16.29 0.00 0.00 3.24
199 200 4.021229 ACACGGTGATGGTCATAAGTCTA 58.979 43.478 16.29 0.00 0.00 2.59
200 201 4.142227 ACACGGTGATGGTCATAAGTCTAC 60.142 45.833 16.29 0.00 0.00 2.59
201 202 4.098044 CACGGTGATGGTCATAAGTCTACT 59.902 45.833 0.74 0.00 0.00 2.57
202 203 4.710375 ACGGTGATGGTCATAAGTCTACTT 59.290 41.667 0.39 0.39 39.85 2.24
203 204 5.043903 CGGTGATGGTCATAAGTCTACTTG 58.956 45.833 5.62 0.00 37.40 3.16
204 205 5.163550 CGGTGATGGTCATAAGTCTACTTGA 60.164 44.000 5.62 0.00 37.40 3.02
205 206 6.461648 CGGTGATGGTCATAAGTCTACTTGAT 60.462 42.308 5.62 0.00 37.40 2.57
206 207 7.275920 GGTGATGGTCATAAGTCTACTTGATT 58.724 38.462 5.62 0.00 37.40 2.57
207 208 8.421784 GGTGATGGTCATAAGTCTACTTGATTA 58.578 37.037 5.62 0.00 37.40 1.75
208 209 9.988815 GTGATGGTCATAAGTCTACTTGATTAT 57.011 33.333 5.62 0.00 37.40 1.28
222 223 9.914131 TCTACTTGATTATCATATTTCTCCACG 57.086 33.333 0.00 0.00 0.00 4.94
223 224 7.426929 ACTTGATTATCATATTTCTCCACGC 57.573 36.000 0.00 0.00 0.00 5.34
224 225 6.428159 ACTTGATTATCATATTTCTCCACGCC 59.572 38.462 0.00 0.00 0.00 5.68
225 226 6.114187 TGATTATCATATTTCTCCACGCCT 57.886 37.500 0.00 0.00 0.00 5.52
226 227 6.533730 TGATTATCATATTTCTCCACGCCTT 58.466 36.000 0.00 0.00 0.00 4.35
227 228 7.676004 TGATTATCATATTTCTCCACGCCTTA 58.324 34.615 0.00 0.00 0.00 2.69
228 229 8.154203 TGATTATCATATTTCTCCACGCCTTAA 58.846 33.333 0.00 0.00 0.00 1.85
229 230 8.918202 ATTATCATATTTCTCCACGCCTTAAA 57.082 30.769 0.00 0.00 0.00 1.52
230 231 8.918202 TTATCATATTTCTCCACGCCTTAAAT 57.082 30.769 0.00 0.00 0.00 1.40
231 232 6.861065 TCATATTTCTCCACGCCTTAAATC 57.139 37.500 0.00 0.00 0.00 2.17
232 233 6.591935 TCATATTTCTCCACGCCTTAAATCT 58.408 36.000 0.00 0.00 0.00 2.40
233 234 6.483307 TCATATTTCTCCACGCCTTAAATCTG 59.517 38.462 0.00 0.00 0.00 2.90
234 235 3.973206 TTCTCCACGCCTTAAATCTGA 57.027 42.857 0.00 0.00 0.00 3.27
235 236 3.973206 TCTCCACGCCTTAAATCTGAA 57.027 42.857 0.00 0.00 0.00 3.02
236 237 3.596214 TCTCCACGCCTTAAATCTGAAC 58.404 45.455 0.00 0.00 0.00 3.18
237 238 3.260884 TCTCCACGCCTTAAATCTGAACT 59.739 43.478 0.00 0.00 0.00 3.01
238 239 3.334691 TCCACGCCTTAAATCTGAACTG 58.665 45.455 0.00 0.00 0.00 3.16
239 240 3.007506 TCCACGCCTTAAATCTGAACTGA 59.992 43.478 0.00 0.00 0.00 3.41
240 241 3.751175 CCACGCCTTAAATCTGAACTGAA 59.249 43.478 0.00 0.00 0.00 3.02
241 242 4.378459 CCACGCCTTAAATCTGAACTGAAC 60.378 45.833 0.00 0.00 0.00 3.18
242 243 4.452455 CACGCCTTAAATCTGAACTGAACT 59.548 41.667 0.00 0.00 0.00 3.01
243 244 4.691216 ACGCCTTAAATCTGAACTGAACTC 59.309 41.667 0.00 0.00 0.00 3.01
244 245 4.932200 CGCCTTAAATCTGAACTGAACTCT 59.068 41.667 0.00 0.00 0.00 3.24
245 246 5.409826 CGCCTTAAATCTGAACTGAACTCTT 59.590 40.000 0.00 0.00 0.00 2.85
246 247 6.590292 CGCCTTAAATCTGAACTGAACTCTTA 59.410 38.462 0.00 0.00 0.00 2.10
247 248 7.201478 CGCCTTAAATCTGAACTGAACTCTTAG 60.201 40.741 0.00 0.00 0.00 2.18
248 249 7.819900 GCCTTAAATCTGAACTGAACTCTTAGA 59.180 37.037 0.00 0.00 0.00 2.10
249 250 9.883142 CCTTAAATCTGAACTGAACTCTTAGAT 57.117 33.333 0.00 0.00 0.00 1.98
252 253 8.770438 AAATCTGAACTGAACTCTTAGATCAC 57.230 34.615 0.00 0.00 0.00 3.06
253 254 5.944013 TCTGAACTGAACTCTTAGATCACG 58.056 41.667 0.00 0.00 0.00 4.35
254 255 5.705905 TCTGAACTGAACTCTTAGATCACGA 59.294 40.000 0.00 0.00 0.00 4.35
255 256 6.375736 TCTGAACTGAACTCTTAGATCACGAT 59.624 38.462 0.00 0.00 0.00 3.73
256 257 6.925211 TGAACTGAACTCTTAGATCACGATT 58.075 36.000 0.00 0.00 0.00 3.34
257 258 7.030165 TGAACTGAACTCTTAGATCACGATTC 58.970 38.462 0.00 0.00 0.00 2.52
258 259 6.516739 ACTGAACTCTTAGATCACGATTCA 57.483 37.500 0.00 0.00 0.00 2.57
259 260 7.106439 ACTGAACTCTTAGATCACGATTCAT 57.894 36.000 0.00 0.00 0.00 2.57
260 261 6.977502 ACTGAACTCTTAGATCACGATTCATG 59.022 38.462 0.00 0.00 0.00 3.07
261 262 6.867550 TGAACTCTTAGATCACGATTCATGT 58.132 36.000 0.00 0.00 0.00 3.21
262 263 6.975197 TGAACTCTTAGATCACGATTCATGTC 59.025 38.462 0.00 0.00 0.00 3.06
263 264 6.456795 ACTCTTAGATCACGATTCATGTCA 57.543 37.500 0.00 0.00 0.00 3.58
264 265 7.048629 ACTCTTAGATCACGATTCATGTCAT 57.951 36.000 0.00 0.00 0.00 3.06
265 266 7.144661 ACTCTTAGATCACGATTCATGTCATC 58.855 38.462 0.00 0.00 0.00 2.92
266 267 7.014134 ACTCTTAGATCACGATTCATGTCATCT 59.986 37.037 0.00 0.00 0.00 2.90
267 268 8.396272 TCTTAGATCACGATTCATGTCATCTA 57.604 34.615 0.00 0.00 0.00 1.98
268 269 8.850156 TCTTAGATCACGATTCATGTCATCTAA 58.150 33.333 0.00 0.70 32.84 2.10
269 270 9.468532 CTTAGATCACGATTCATGTCATCTAAA 57.531 33.333 0.00 0.00 33.25 1.85
270 271 9.987272 TTAGATCACGATTCATGTCATCTAAAT 57.013 29.630 0.00 0.00 31.52 1.40
295 296 9.920946 ATATTACAGTTTGAATAGGACAATGGT 57.079 29.630 0.00 0.00 0.00 3.55
296 297 5.964958 ACAGTTTGAATAGGACAATGGTG 57.035 39.130 0.00 0.00 0.00 4.17
297 298 4.766891 ACAGTTTGAATAGGACAATGGTGG 59.233 41.667 0.00 0.00 0.00 4.61
298 299 5.009631 CAGTTTGAATAGGACAATGGTGGA 58.990 41.667 0.00 0.00 0.00 4.02
299 300 5.476599 CAGTTTGAATAGGACAATGGTGGAA 59.523 40.000 0.00 0.00 0.00 3.53
300 301 5.476945 AGTTTGAATAGGACAATGGTGGAAC 59.523 40.000 0.00 0.00 0.00 3.62
301 302 4.927267 TGAATAGGACAATGGTGGAACT 57.073 40.909 0.00 0.00 36.74 3.01
302 303 5.255397 TGAATAGGACAATGGTGGAACTT 57.745 39.130 0.00 0.00 36.74 2.66
303 304 5.640147 TGAATAGGACAATGGTGGAACTTT 58.360 37.500 0.00 0.00 36.74 2.66
304 305 5.476599 TGAATAGGACAATGGTGGAACTTTG 59.523 40.000 0.00 0.00 36.47 2.77
305 306 3.593442 AGGACAATGGTGGAACTTTGA 57.407 42.857 0.00 0.00 35.13 2.69
306 307 3.490348 AGGACAATGGTGGAACTTTGAG 58.510 45.455 0.00 0.00 35.13 3.02
307 308 2.029918 GGACAATGGTGGAACTTTGAGC 60.030 50.000 0.00 0.00 35.13 4.26
308 309 2.622942 GACAATGGTGGAACTTTGAGCA 59.377 45.455 0.00 0.00 35.13 4.26
309 310 3.030291 ACAATGGTGGAACTTTGAGCAA 58.970 40.909 0.00 0.00 35.13 3.91
310 311 3.450457 ACAATGGTGGAACTTTGAGCAAA 59.550 39.130 0.00 0.00 35.13 3.68
311 312 3.733443 ATGGTGGAACTTTGAGCAAAC 57.267 42.857 0.00 0.00 36.74 2.93
312 313 2.451490 TGGTGGAACTTTGAGCAAACA 58.549 42.857 0.00 0.00 36.74 2.83
313 314 2.828520 TGGTGGAACTTTGAGCAAACAA 59.171 40.909 0.00 0.00 36.74 2.83
314 315 3.450457 TGGTGGAACTTTGAGCAAACAAT 59.550 39.130 0.00 0.00 36.74 2.71
315 316 4.081198 TGGTGGAACTTTGAGCAAACAATT 60.081 37.500 0.00 0.00 36.74 2.32
316 317 4.875536 GGTGGAACTTTGAGCAAACAATTT 59.124 37.500 0.00 0.00 36.74 1.82
317 318 5.353956 GGTGGAACTTTGAGCAAACAATTTT 59.646 36.000 0.00 0.00 36.74 1.82
318 319 6.128035 GGTGGAACTTTGAGCAAACAATTTTT 60.128 34.615 0.00 0.00 36.74 1.94
366 367 9.813826 ATAACTATATATTTTGGAGGCAAAGCT 57.186 29.630 0.00 0.00 0.00 3.74
368 369 9.813826 AACTATATATTTTGGAGGCAAAGCTAT 57.186 29.630 0.00 0.00 0.00 2.97
369 370 9.454859 ACTATATATTTTGGAGGCAAAGCTATC 57.545 33.333 0.00 0.00 0.00 2.08
370 371 7.709149 ATATATTTTGGAGGCAAAGCTATCC 57.291 36.000 0.00 6.78 35.84 2.59
371 372 2.143876 TTTGGAGGCAAAGCTATCCC 57.856 50.000 9.98 0.00 34.93 3.85
372 373 1.298953 TTGGAGGCAAAGCTATCCCT 58.701 50.000 9.98 0.00 34.93 4.20
373 374 0.548031 TGGAGGCAAAGCTATCCCTG 59.452 55.000 3.92 0.00 34.93 4.45
374 375 0.548510 GGAGGCAAAGCTATCCCTGT 59.451 55.000 3.92 0.00 31.57 4.00
375 376 1.768870 GGAGGCAAAGCTATCCCTGTA 59.231 52.381 3.92 0.00 31.57 2.74
376 377 2.172717 GGAGGCAAAGCTATCCCTGTAA 59.827 50.000 3.92 0.00 31.57 2.41
377 378 3.181439 GGAGGCAAAGCTATCCCTGTAAT 60.181 47.826 3.92 0.00 31.57 1.89
378 379 4.041691 GGAGGCAAAGCTATCCCTGTAATA 59.958 45.833 3.92 0.00 31.57 0.98
379 380 5.456186 GGAGGCAAAGCTATCCCTGTAATAA 60.456 44.000 3.92 0.00 31.57 1.40
380 381 5.625150 AGGCAAAGCTATCCCTGTAATAAG 58.375 41.667 0.00 0.00 0.00 1.73
381 382 4.762251 GGCAAAGCTATCCCTGTAATAAGG 59.238 45.833 0.00 0.00 37.05 2.69
382 383 5.456186 GGCAAAGCTATCCCTGTAATAAGGA 60.456 44.000 0.00 0.00 40.02 3.36
383 384 5.703130 GCAAAGCTATCCCTGTAATAAGGAG 59.297 44.000 0.00 0.00 40.02 3.69
384 385 6.464465 GCAAAGCTATCCCTGTAATAAGGAGA 60.464 42.308 0.00 0.00 40.02 3.71
385 386 6.926630 AAGCTATCCCTGTAATAAGGAGAG 57.073 41.667 0.00 0.00 41.09 3.20
386 387 6.220881 AGCTATCCCTGTAATAAGGAGAGA 57.779 41.667 4.18 0.00 40.70 3.10
387 388 6.625267 AGCTATCCCTGTAATAAGGAGAGAA 58.375 40.000 4.18 0.00 40.70 2.87
388 389 7.076446 AGCTATCCCTGTAATAAGGAGAGAAA 58.924 38.462 4.18 0.00 40.70 2.52
389 390 7.569111 AGCTATCCCTGTAATAAGGAGAGAAAA 59.431 37.037 4.18 0.00 40.70 2.29
390 391 7.658167 GCTATCCCTGTAATAAGGAGAGAAAAC 59.342 40.741 4.18 0.00 40.70 2.43
391 392 7.757242 ATCCCTGTAATAAGGAGAGAAAACT 57.243 36.000 0.00 0.00 40.02 2.66
392 393 7.184067 TCCCTGTAATAAGGAGAGAAAACTC 57.816 40.000 0.00 0.00 40.02 3.01
393 394 6.043411 CCCTGTAATAAGGAGAGAAAACTCG 58.957 44.000 0.00 0.00 40.02 4.18
394 395 6.127423 CCCTGTAATAAGGAGAGAAAACTCGA 60.127 42.308 0.00 0.00 40.02 4.04
395 396 7.321153 CCTGTAATAAGGAGAGAAAACTCGAA 58.679 38.462 0.00 0.00 40.02 3.71
396 397 7.982354 CCTGTAATAAGGAGAGAAAACTCGAAT 59.018 37.037 0.00 0.00 40.02 3.34
398 399 9.798994 TGTAATAAGGAGAGAAAACTCGAATAC 57.201 33.333 0.00 0.00 37.74 1.89
399 400 9.798994 GTAATAAGGAGAGAAAACTCGAATACA 57.201 33.333 0.00 0.00 37.74 2.29
400 401 8.934507 AATAAGGAGAGAAAACTCGAATACAG 57.065 34.615 0.00 0.00 37.74 2.74
401 402 6.591750 AAGGAGAGAAAACTCGAATACAGA 57.408 37.500 0.00 0.00 37.74 3.41
402 403 6.591750 AGGAGAGAAAACTCGAATACAGAA 57.408 37.500 0.00 0.00 37.74 3.02
403 404 6.994221 AGGAGAGAAAACTCGAATACAGAAA 58.006 36.000 0.00 0.00 37.74 2.52
404 405 7.442656 AGGAGAGAAAACTCGAATACAGAAAA 58.557 34.615 0.00 0.00 37.74 2.29
405 406 7.931948 AGGAGAGAAAACTCGAATACAGAAAAA 59.068 33.333 0.00 0.00 37.74 1.94
406 407 8.010540 GGAGAGAAAACTCGAATACAGAAAAAC 58.989 37.037 0.00 0.00 37.74 2.43
407 408 8.433421 AGAGAAAACTCGAATACAGAAAAACA 57.567 30.769 0.00 0.00 0.00 2.83
408 409 8.336080 AGAGAAAACTCGAATACAGAAAAACAC 58.664 33.333 0.00 0.00 0.00 3.32
409 410 7.415229 AGAAAACTCGAATACAGAAAAACACC 58.585 34.615 0.00 0.00 0.00 4.16
410 411 5.684550 AACTCGAATACAGAAAAACACCC 57.315 39.130 0.00 0.00 0.00 4.61
411 412 4.710324 ACTCGAATACAGAAAAACACCCA 58.290 39.130 0.00 0.00 0.00 4.51
412 413 5.313712 ACTCGAATACAGAAAAACACCCAT 58.686 37.500 0.00 0.00 0.00 4.00
413 414 6.469410 ACTCGAATACAGAAAAACACCCATA 58.531 36.000 0.00 0.00 0.00 2.74
414 415 6.938030 ACTCGAATACAGAAAAACACCCATAA 59.062 34.615 0.00 0.00 0.00 1.90
415 416 7.119262 ACTCGAATACAGAAAAACACCCATAAG 59.881 37.037 0.00 0.00 0.00 1.73
416 417 6.027749 CGAATACAGAAAAACACCCATAAGC 58.972 40.000 0.00 0.00 0.00 3.09
417 418 6.128007 CGAATACAGAAAAACACCCATAAGCT 60.128 38.462 0.00 0.00 0.00 3.74
418 419 7.539034 AATACAGAAAAACACCCATAAGCTT 57.461 32.000 3.48 3.48 0.00 3.74
419 420 5.869649 ACAGAAAAACACCCATAAGCTTT 57.130 34.783 3.20 0.00 0.00 3.51
420 421 6.969993 ACAGAAAAACACCCATAAGCTTTA 57.030 33.333 3.20 0.00 0.00 1.85
421 422 7.539034 ACAGAAAAACACCCATAAGCTTTAT 57.461 32.000 3.20 0.00 0.00 1.40
422 423 8.644374 ACAGAAAAACACCCATAAGCTTTATA 57.356 30.769 3.20 0.00 0.00 0.98
423 424 8.520351 ACAGAAAAACACCCATAAGCTTTATAC 58.480 33.333 3.20 0.00 0.00 1.47
424 425 8.739972 CAGAAAAACACCCATAAGCTTTATACT 58.260 33.333 3.20 0.00 0.00 2.12
425 426 8.739972 AGAAAAACACCCATAAGCTTTATACTG 58.260 33.333 3.20 0.00 0.00 2.74
426 427 6.451064 AAACACCCATAAGCTTTATACTGC 57.549 37.500 3.20 0.00 0.00 4.40
427 428 5.110814 ACACCCATAAGCTTTATACTGCA 57.889 39.130 3.20 0.00 0.00 4.41
428 429 5.694995 ACACCCATAAGCTTTATACTGCAT 58.305 37.500 3.20 0.00 0.00 3.96
429 430 5.765182 ACACCCATAAGCTTTATACTGCATC 59.235 40.000 3.20 0.00 0.00 3.91
430 431 5.764686 CACCCATAAGCTTTATACTGCATCA 59.235 40.000 3.20 0.00 0.00 3.07
431 432 5.765182 ACCCATAAGCTTTATACTGCATCAC 59.235 40.000 3.20 0.00 0.00 3.06
432 433 6.000219 CCCATAAGCTTTATACTGCATCACT 59.000 40.000 3.20 0.00 0.00 3.41
433 434 6.072838 CCCATAAGCTTTATACTGCATCACTG 60.073 42.308 3.20 0.00 0.00 3.66
434 435 6.707608 CCATAAGCTTTATACTGCATCACTGA 59.292 38.462 3.20 0.00 0.00 3.41
435 436 7.389884 CCATAAGCTTTATACTGCATCACTGAT 59.610 37.037 3.20 0.00 0.00 2.90
436 437 8.781196 CATAAGCTTTATACTGCATCACTGATT 58.219 33.333 3.20 0.00 0.00 2.57
437 438 7.636150 AAGCTTTATACTGCATCACTGATTT 57.364 32.000 0.00 0.00 0.00 2.17
438 439 7.024340 AGCTTTATACTGCATCACTGATTTG 57.976 36.000 0.00 0.00 0.00 2.32
442 443 3.928727 ACTGCATCACTGATTTGTTGG 57.071 42.857 0.00 0.00 0.00 3.77
534 535 4.263025 CCTTCATGTATATGTGCTGGCCTA 60.263 45.833 3.32 0.00 35.73 3.93
552 553 3.282021 CCTATTGGCCCGATGGAATATG 58.718 50.000 0.00 0.00 0.00 1.78
601 602 2.271173 GGTTAGGTTCCCCAGCCG 59.729 66.667 0.00 0.00 0.00 5.52
602 603 2.437895 GTTAGGTTCCCCAGCCGC 60.438 66.667 0.00 0.00 0.00 6.53
603 604 3.723922 TTAGGTTCCCCAGCCGCC 61.724 66.667 0.00 0.00 0.00 6.13
673 714 0.325671 TTCATCGAGCCTCTCCCCTT 60.326 55.000 0.00 0.00 0.00 3.95
831 891 0.037139 CTCTTCTCTGCTGCTGCTGT 60.037 55.000 17.00 0.00 40.48 4.40
931 994 1.894978 GCTCTTCTCCTCCTGGTCTGT 60.895 57.143 0.00 0.00 34.23 3.41
1098 1161 1.530013 GGGTGCAGCACATGAAGCTT 61.530 55.000 26.78 0.00 41.14 3.74
1559 1627 2.560504 TGTTTGTCGCAGATGTCAGTT 58.439 42.857 0.00 0.00 40.67 3.16
1567 1635 2.032054 CGCAGATGTCAGTTTTGTGTGT 59.968 45.455 0.00 0.00 0.00 3.72
1595 1663 0.246635 GCTAAGCTGGAGGTTCGTCA 59.753 55.000 0.00 0.00 37.00 4.35
1682 1750 1.243902 CATCCTCGGCTCTCTACTCC 58.756 60.000 0.00 0.00 0.00 3.85
1816 1884 1.347707 CCTCTTCTACACAGGTGGCAA 59.652 52.381 4.24 0.00 34.19 4.52
2162 2230 6.433404 AGAGATCATCTTTGTGCTGTCAATTT 59.567 34.615 0.00 0.00 32.99 1.82
2364 2432 3.531538 TGACTCTTGTTGTGTTCAGGAC 58.468 45.455 0.00 0.00 0.00 3.85
2365 2433 3.197766 TGACTCTTGTTGTGTTCAGGACT 59.802 43.478 0.00 0.00 0.00 3.85
2398 2466 0.546747 TCTGGTTGGGATCGGTCCTT 60.547 55.000 15.87 0.00 44.44 3.36
2567 2635 0.037590 ATTTGTGGCTCCCGCTTGTA 59.962 50.000 0.00 0.00 34.70 2.41
2724 2796 3.189606 TGTTCAGATGTATGGGGTCCTT 58.810 45.455 0.00 0.00 0.00 3.36
3006 3081 2.181975 CTCAAAATGGGGTGGCTGAAT 58.818 47.619 0.00 0.00 0.00 2.57
3016 3091 1.273048 GGTGGCTGAATGCAAACATCA 59.727 47.619 0.00 0.00 45.15 3.07
3077 3152 0.821711 CTGTTCCCCCGCACTTTTGA 60.822 55.000 0.00 0.00 0.00 2.69
3197 3272 4.458295 GCTGATTATAGTGGTCTACGCCTA 59.542 45.833 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.826252 CCCCACATAGATTACTGGATAAATCAG 59.174 40.741 0.00 0.00 35.07 2.90
2 3 7.515861 TCCCCACATAGATTACTGGATAAATCA 59.484 37.037 0.00 0.00 35.07 2.57
3 4 7.824779 GTCCCCACATAGATTACTGGATAAATC 59.175 40.741 0.00 0.00 33.21 2.17
4 5 7.517604 AGTCCCCACATAGATTACTGGATAAAT 59.482 37.037 0.00 0.00 0.00 1.40
5 6 6.849697 AGTCCCCACATAGATTACTGGATAAA 59.150 38.462 0.00 0.00 0.00 1.40
6 7 6.270000 CAGTCCCCACATAGATTACTGGATAA 59.730 42.308 0.00 0.00 31.46 1.75
7 8 5.780282 CAGTCCCCACATAGATTACTGGATA 59.220 44.000 0.00 0.00 31.46 2.59
8 9 4.594920 CAGTCCCCACATAGATTACTGGAT 59.405 45.833 0.00 0.00 31.46 3.41
9 10 3.967326 CAGTCCCCACATAGATTACTGGA 59.033 47.826 0.00 0.00 31.46 3.86
10 11 3.711704 ACAGTCCCCACATAGATTACTGG 59.288 47.826 0.00 0.00 37.71 4.00
11 12 5.104941 TGAACAGTCCCCACATAGATTACTG 60.105 44.000 0.00 0.00 38.97 2.74
12 13 5.030147 TGAACAGTCCCCACATAGATTACT 58.970 41.667 0.00 0.00 0.00 2.24
13 14 5.353394 TGAACAGTCCCCACATAGATTAC 57.647 43.478 0.00 0.00 0.00 1.89
14 15 5.629133 GCTTGAACAGTCCCCACATAGATTA 60.629 44.000 0.00 0.00 0.00 1.75
15 16 4.848357 CTTGAACAGTCCCCACATAGATT 58.152 43.478 0.00 0.00 0.00 2.40
16 17 3.370953 GCTTGAACAGTCCCCACATAGAT 60.371 47.826 0.00 0.00 0.00 1.98
17 18 2.027192 GCTTGAACAGTCCCCACATAGA 60.027 50.000 0.00 0.00 0.00 1.98
18 19 2.026822 AGCTTGAACAGTCCCCACATAG 60.027 50.000 0.00 0.00 0.00 2.23
19 20 1.985159 AGCTTGAACAGTCCCCACATA 59.015 47.619 0.00 0.00 0.00 2.29
20 21 0.773644 AGCTTGAACAGTCCCCACAT 59.226 50.000 0.00 0.00 0.00 3.21
21 22 1.429930 TAGCTTGAACAGTCCCCACA 58.570 50.000 0.00 0.00 0.00 4.17
22 23 2.152016 GTTAGCTTGAACAGTCCCCAC 58.848 52.381 0.00 0.00 0.00 4.61
23 24 2.038557 GAGTTAGCTTGAACAGTCCCCA 59.961 50.000 0.00 0.00 0.00 4.96
24 25 2.038557 TGAGTTAGCTTGAACAGTCCCC 59.961 50.000 0.00 0.00 0.00 4.81
25 26 3.330267 CTGAGTTAGCTTGAACAGTCCC 58.670 50.000 0.00 0.00 0.00 4.46
52 53 9.799106 ACCAGGTCATCTATAATTGGATTAAAG 57.201 33.333 0.00 0.00 0.00 1.85
55 56 8.540388 GCTACCAGGTCATCTATAATTGGATTA 58.460 37.037 0.00 0.00 0.00 1.75
56 57 7.398024 GCTACCAGGTCATCTATAATTGGATT 58.602 38.462 0.00 0.00 0.00 3.01
57 58 6.069963 GGCTACCAGGTCATCTATAATTGGAT 60.070 42.308 0.00 0.00 0.00 3.41
58 59 5.248477 GGCTACCAGGTCATCTATAATTGGA 59.752 44.000 0.00 0.00 0.00 3.53
59 60 5.249393 AGGCTACCAGGTCATCTATAATTGG 59.751 44.000 0.00 0.00 0.00 3.16
60 61 6.365970 AGGCTACCAGGTCATCTATAATTG 57.634 41.667 0.00 0.00 0.00 2.32
61 62 8.686739 ATAAGGCTACCAGGTCATCTATAATT 57.313 34.615 0.00 0.00 0.00 1.40
62 63 9.959693 ATATAAGGCTACCAGGTCATCTATAAT 57.040 33.333 0.00 0.00 0.00 1.28
65 66 9.784376 TTTATATAAGGCTACCAGGTCATCTAT 57.216 33.333 0.00 0.00 0.00 1.98
66 67 9.784376 ATTTATATAAGGCTACCAGGTCATCTA 57.216 33.333 0.00 0.00 0.00 1.98
67 68 8.686739 ATTTATATAAGGCTACCAGGTCATCT 57.313 34.615 0.00 0.00 0.00 2.90
68 69 9.740710 AAATTTATATAAGGCTACCAGGTCATC 57.259 33.333 0.00 0.00 0.00 2.92
70 71 9.569122 GAAAATTTATATAAGGCTACCAGGTCA 57.431 33.333 0.00 0.00 0.00 4.02
71 72 9.569122 TGAAAATTTATATAAGGCTACCAGGTC 57.431 33.333 0.00 0.00 0.00 3.85
90 91 9.434420 TGAAACTTTCTTCACAACATGAAAATT 57.566 25.926 0.00 0.00 46.80 1.82
91 92 9.434420 TTGAAACTTTCTTCACAACATGAAAAT 57.566 25.926 0.00 0.00 46.80 1.82
92 93 8.824159 TTGAAACTTTCTTCACAACATGAAAA 57.176 26.923 0.00 0.00 46.80 2.29
93 94 8.707839 GTTTGAAACTTTCTTCACAACATGAAA 58.292 29.630 0.00 0.00 46.80 2.69
94 95 7.869937 TGTTTGAAACTTTCTTCACAACATGAA 59.130 29.630 9.69 0.00 45.39 2.57
95 96 7.374272 TGTTTGAAACTTTCTTCACAACATGA 58.626 30.769 9.69 0.00 35.07 3.07
96 97 7.579589 TGTTTGAAACTTTCTTCACAACATG 57.420 32.000 9.69 0.00 35.07 3.21
97 98 6.311200 GCTGTTTGAAACTTTCTTCACAACAT 59.689 34.615 9.69 0.00 36.66 2.71
98 99 5.633182 GCTGTTTGAAACTTTCTTCACAACA 59.367 36.000 9.69 10.64 35.07 3.33
99 100 5.863935 AGCTGTTTGAAACTTTCTTCACAAC 59.136 36.000 9.69 0.23 35.07 3.32
100 101 6.024552 AGCTGTTTGAAACTTTCTTCACAA 57.975 33.333 9.69 0.00 35.07 3.33
101 102 5.643379 AGCTGTTTGAAACTTTCTTCACA 57.357 34.783 9.69 2.97 35.07 3.58
102 103 8.634475 AATTAGCTGTTTGAAACTTTCTTCAC 57.366 30.769 9.69 0.00 35.07 3.18
114 115 8.591312 GCGCAAAATATTAAATTAGCTGTTTGA 58.409 29.630 0.30 0.00 0.00 2.69
115 116 8.379161 TGCGCAAAATATTAAATTAGCTGTTTG 58.621 29.630 8.16 0.00 0.00 2.93
116 117 8.472683 TGCGCAAAATATTAAATTAGCTGTTT 57.527 26.923 8.16 0.00 0.00 2.83
117 118 7.973388 TCTGCGCAAAATATTAAATTAGCTGTT 59.027 29.630 13.05 0.00 0.00 3.16
118 119 7.479980 TCTGCGCAAAATATTAAATTAGCTGT 58.520 30.769 13.05 0.00 0.00 4.40
119 120 7.857389 TCTCTGCGCAAAATATTAAATTAGCTG 59.143 33.333 13.05 0.00 0.00 4.24
120 121 7.857885 GTCTCTGCGCAAAATATTAAATTAGCT 59.142 33.333 13.05 0.00 0.00 3.32
121 122 7.643764 TGTCTCTGCGCAAAATATTAAATTAGC 59.356 33.333 13.05 0.00 0.00 3.09
122 123 9.669353 ATGTCTCTGCGCAAAATATTAAATTAG 57.331 29.630 13.05 0.00 0.00 1.73
123 124 9.663904 GATGTCTCTGCGCAAAATATTAAATTA 57.336 29.630 13.05 0.00 0.00 1.40
124 125 8.190122 TGATGTCTCTGCGCAAAATATTAAATT 58.810 29.630 13.05 0.00 0.00 1.82
125 126 7.706159 TGATGTCTCTGCGCAAAATATTAAAT 58.294 30.769 13.05 0.00 0.00 1.40
126 127 7.082700 TGATGTCTCTGCGCAAAATATTAAA 57.917 32.000 13.05 0.00 0.00 1.52
127 128 6.238456 CCTGATGTCTCTGCGCAAAATATTAA 60.238 38.462 13.05 0.00 0.00 1.40
128 129 5.237127 CCTGATGTCTCTGCGCAAAATATTA 59.763 40.000 13.05 0.00 0.00 0.98
129 130 4.036027 CCTGATGTCTCTGCGCAAAATATT 59.964 41.667 13.05 0.00 0.00 1.28
130 131 3.562973 CCTGATGTCTCTGCGCAAAATAT 59.437 43.478 13.05 3.27 0.00 1.28
131 132 2.938451 CCTGATGTCTCTGCGCAAAATA 59.062 45.455 13.05 0.00 0.00 1.40
132 133 1.741706 CCTGATGTCTCTGCGCAAAAT 59.258 47.619 13.05 0.00 0.00 1.82
133 134 1.159285 CCTGATGTCTCTGCGCAAAA 58.841 50.000 13.05 0.97 0.00 2.44
134 135 1.300971 GCCTGATGTCTCTGCGCAAA 61.301 55.000 13.05 0.00 0.00 3.68
135 136 1.742880 GCCTGATGTCTCTGCGCAA 60.743 57.895 13.05 0.00 0.00 4.85
136 137 1.322538 TAGCCTGATGTCTCTGCGCA 61.323 55.000 10.98 10.98 0.00 6.09
137 138 0.597118 CTAGCCTGATGTCTCTGCGC 60.597 60.000 0.00 0.00 0.00 6.09
138 139 0.597118 GCTAGCCTGATGTCTCTGCG 60.597 60.000 2.29 0.00 0.00 5.18
139 140 0.752054 AGCTAGCCTGATGTCTCTGC 59.248 55.000 12.13 0.00 0.00 4.26
140 141 2.030371 TCAGCTAGCCTGATGTCTCTG 58.970 52.381 12.13 0.00 45.44 3.35
141 142 2.450867 TCAGCTAGCCTGATGTCTCT 57.549 50.000 12.13 0.00 45.44 3.10
149 150 1.200948 GCTTTGGTTTCAGCTAGCCTG 59.799 52.381 12.13 9.38 43.17 4.85
150 151 1.202927 TGCTTTGGTTTCAGCTAGCCT 60.203 47.619 12.13 0.00 36.92 4.58
151 152 1.247567 TGCTTTGGTTTCAGCTAGCC 58.752 50.000 12.13 0.00 36.92 3.93
152 153 3.243535 ACTTTGCTTTGGTTTCAGCTAGC 60.244 43.478 6.62 6.62 36.92 3.42
153 154 4.036734 TCACTTTGCTTTGGTTTCAGCTAG 59.963 41.667 0.00 0.00 36.92 3.42
154 155 3.951037 TCACTTTGCTTTGGTTTCAGCTA 59.049 39.130 0.00 0.00 36.92 3.32
155 156 2.760092 TCACTTTGCTTTGGTTTCAGCT 59.240 40.909 0.00 0.00 36.92 4.24
156 157 3.163630 TCACTTTGCTTTGGTTTCAGC 57.836 42.857 0.00 0.00 36.49 4.26
157 158 4.327087 GTGTTCACTTTGCTTTGGTTTCAG 59.673 41.667 0.00 0.00 0.00 3.02
158 159 4.241681 GTGTTCACTTTGCTTTGGTTTCA 58.758 39.130 0.00 0.00 0.00 2.69
159 160 3.303229 CGTGTTCACTTTGCTTTGGTTTC 59.697 43.478 1.53 0.00 0.00 2.78
160 161 3.249917 CGTGTTCACTTTGCTTTGGTTT 58.750 40.909 1.53 0.00 0.00 3.27
161 162 2.416701 CCGTGTTCACTTTGCTTTGGTT 60.417 45.455 1.53 0.00 0.00 3.67
162 163 1.134175 CCGTGTTCACTTTGCTTTGGT 59.866 47.619 1.53 0.00 0.00 3.67
163 164 1.134175 ACCGTGTTCACTTTGCTTTGG 59.866 47.619 1.53 0.00 0.00 3.28
164 165 2.159448 TCACCGTGTTCACTTTGCTTTG 60.159 45.455 0.00 0.00 0.00 2.77
165 166 2.088423 TCACCGTGTTCACTTTGCTTT 58.912 42.857 0.00 0.00 0.00 3.51
166 167 1.745232 TCACCGTGTTCACTTTGCTT 58.255 45.000 0.00 0.00 0.00 3.91
167 168 1.603802 CATCACCGTGTTCACTTTGCT 59.396 47.619 0.00 0.00 0.00 3.91
168 169 1.334960 CCATCACCGTGTTCACTTTGC 60.335 52.381 0.00 0.00 0.00 3.68
169 170 1.946768 ACCATCACCGTGTTCACTTTG 59.053 47.619 0.00 0.00 0.00 2.77
170 171 2.218603 GACCATCACCGTGTTCACTTT 58.781 47.619 0.00 0.00 0.00 2.66
171 172 1.140052 TGACCATCACCGTGTTCACTT 59.860 47.619 0.00 0.00 0.00 3.16
172 173 0.756294 TGACCATCACCGTGTTCACT 59.244 50.000 0.00 0.00 0.00 3.41
173 174 1.808411 ATGACCATCACCGTGTTCAC 58.192 50.000 0.00 0.00 0.00 3.18
174 175 3.007506 ACTTATGACCATCACCGTGTTCA 59.992 43.478 0.00 0.00 0.00 3.18
175 176 3.596214 ACTTATGACCATCACCGTGTTC 58.404 45.455 0.00 0.00 0.00 3.18
176 177 3.260884 AGACTTATGACCATCACCGTGTT 59.739 43.478 0.00 0.00 0.00 3.32
177 178 2.832129 AGACTTATGACCATCACCGTGT 59.168 45.455 0.00 0.00 0.00 4.49
178 179 3.526931 AGACTTATGACCATCACCGTG 57.473 47.619 0.00 0.00 0.00 4.94
179 180 4.279145 AGTAGACTTATGACCATCACCGT 58.721 43.478 0.00 0.00 0.00 4.83
180 181 4.920640 AGTAGACTTATGACCATCACCG 57.079 45.455 0.00 0.00 0.00 4.94
181 182 6.222038 TCAAGTAGACTTATGACCATCACC 57.778 41.667 0.00 0.00 34.28 4.02
182 183 9.988815 ATAATCAAGTAGACTTATGACCATCAC 57.011 33.333 0.00 0.00 34.28 3.06
196 197 9.914131 CGTGGAGAAATATGATAATCAAGTAGA 57.086 33.333 0.00 0.00 0.00 2.59
197 198 8.651588 GCGTGGAGAAATATGATAATCAAGTAG 58.348 37.037 0.00 0.00 0.00 2.57
198 199 7.602644 GGCGTGGAGAAATATGATAATCAAGTA 59.397 37.037 0.00 0.00 0.00 2.24
199 200 6.428159 GGCGTGGAGAAATATGATAATCAAGT 59.572 38.462 0.00 0.00 0.00 3.16
200 201 6.652481 AGGCGTGGAGAAATATGATAATCAAG 59.348 38.462 0.00 0.00 0.00 3.02
201 202 6.533730 AGGCGTGGAGAAATATGATAATCAA 58.466 36.000 0.00 0.00 0.00 2.57
202 203 6.114187 AGGCGTGGAGAAATATGATAATCA 57.886 37.500 0.00 0.00 0.00 2.57
203 204 8.547967 TTAAGGCGTGGAGAAATATGATAATC 57.452 34.615 0.00 0.00 0.00 1.75
204 205 8.918202 TTTAAGGCGTGGAGAAATATGATAAT 57.082 30.769 0.00 0.00 0.00 1.28
205 206 8.918202 ATTTAAGGCGTGGAGAAATATGATAA 57.082 30.769 0.00 0.00 0.00 1.75
206 207 8.375506 AGATTTAAGGCGTGGAGAAATATGATA 58.624 33.333 0.00 0.00 0.00 2.15
207 208 7.173907 CAGATTTAAGGCGTGGAGAAATATGAT 59.826 37.037 0.00 0.00 32.91 2.45
208 209 6.483307 CAGATTTAAGGCGTGGAGAAATATGA 59.517 38.462 0.00 0.00 32.91 2.15
209 210 6.483307 TCAGATTTAAGGCGTGGAGAAATATG 59.517 38.462 0.00 0.00 32.59 1.78
210 211 6.591935 TCAGATTTAAGGCGTGGAGAAATAT 58.408 36.000 0.00 0.00 0.00 1.28
211 212 5.984725 TCAGATTTAAGGCGTGGAGAAATA 58.015 37.500 0.00 0.00 0.00 1.40
212 213 4.843728 TCAGATTTAAGGCGTGGAGAAAT 58.156 39.130 0.00 0.00 0.00 2.17
213 214 4.280436 TCAGATTTAAGGCGTGGAGAAA 57.720 40.909 0.00 0.00 0.00 2.52
214 215 3.973206 TCAGATTTAAGGCGTGGAGAA 57.027 42.857 0.00 0.00 0.00 2.87
215 216 3.260884 AGTTCAGATTTAAGGCGTGGAGA 59.739 43.478 0.00 0.00 0.00 3.71
216 217 3.372206 CAGTTCAGATTTAAGGCGTGGAG 59.628 47.826 0.00 0.00 0.00 3.86
217 218 3.007506 TCAGTTCAGATTTAAGGCGTGGA 59.992 43.478 0.00 0.00 0.00 4.02
218 219 3.334691 TCAGTTCAGATTTAAGGCGTGG 58.665 45.455 0.00 0.00 0.00 4.94
219 220 4.452455 AGTTCAGTTCAGATTTAAGGCGTG 59.548 41.667 0.00 0.00 0.00 5.34
220 221 4.642429 AGTTCAGTTCAGATTTAAGGCGT 58.358 39.130 0.00 0.00 0.00 5.68
221 222 4.932200 AGAGTTCAGTTCAGATTTAAGGCG 59.068 41.667 0.00 0.00 0.00 5.52
222 223 6.809630 AAGAGTTCAGTTCAGATTTAAGGC 57.190 37.500 0.00 0.00 0.00 4.35
223 224 9.883142 ATCTAAGAGTTCAGTTCAGATTTAAGG 57.117 33.333 0.00 0.00 0.00 2.69
226 227 9.862371 GTGATCTAAGAGTTCAGTTCAGATTTA 57.138 33.333 0.00 0.00 0.00 1.40
227 228 7.543868 CGTGATCTAAGAGTTCAGTTCAGATTT 59.456 37.037 0.00 0.00 0.00 2.17
228 229 7.032580 CGTGATCTAAGAGTTCAGTTCAGATT 58.967 38.462 0.00 0.00 0.00 2.40
229 230 6.375736 TCGTGATCTAAGAGTTCAGTTCAGAT 59.624 38.462 0.00 0.00 0.00 2.90
230 231 5.705905 TCGTGATCTAAGAGTTCAGTTCAGA 59.294 40.000 0.00 0.00 0.00 3.27
231 232 5.944013 TCGTGATCTAAGAGTTCAGTTCAG 58.056 41.667 0.00 0.00 0.00 3.02
232 233 5.959618 TCGTGATCTAAGAGTTCAGTTCA 57.040 39.130 0.00 0.00 0.00 3.18
233 234 7.030165 TGAATCGTGATCTAAGAGTTCAGTTC 58.970 38.462 0.00 0.00 0.00 3.01
234 235 6.925211 TGAATCGTGATCTAAGAGTTCAGTT 58.075 36.000 0.00 0.00 0.00 3.16
235 236 6.516739 TGAATCGTGATCTAAGAGTTCAGT 57.483 37.500 0.00 0.00 0.00 3.41
236 237 6.977502 ACATGAATCGTGATCTAAGAGTTCAG 59.022 38.462 9.74 0.00 0.00 3.02
237 238 6.867550 ACATGAATCGTGATCTAAGAGTTCA 58.132 36.000 9.74 0.00 0.00 3.18
238 239 6.975197 TGACATGAATCGTGATCTAAGAGTTC 59.025 38.462 9.74 0.00 0.00 3.01
239 240 6.867550 TGACATGAATCGTGATCTAAGAGTT 58.132 36.000 9.74 0.00 0.00 3.01
240 241 6.456795 TGACATGAATCGTGATCTAAGAGT 57.543 37.500 9.74 0.00 0.00 3.24
241 242 7.369607 AGATGACATGAATCGTGATCTAAGAG 58.630 38.462 9.74 0.00 0.00 2.85
242 243 7.282332 AGATGACATGAATCGTGATCTAAGA 57.718 36.000 9.74 0.00 0.00 2.10
243 244 9.468532 TTTAGATGACATGAATCGTGATCTAAG 57.531 33.333 18.09 0.00 32.73 2.18
244 245 9.987272 ATTTAGATGACATGAATCGTGATCTAA 57.013 29.630 16.33 16.33 30.95 2.10
269 270 9.920946 ACCATTGTCCTATTCAAACTGTAATAT 57.079 29.630 0.00 0.00 0.00 1.28
270 271 9.173021 CACCATTGTCCTATTCAAACTGTAATA 57.827 33.333 0.00 0.00 0.00 0.98
271 272 7.122650 CCACCATTGTCCTATTCAAACTGTAAT 59.877 37.037 0.00 0.00 0.00 1.89
272 273 6.432783 CCACCATTGTCCTATTCAAACTGTAA 59.567 38.462 0.00 0.00 0.00 2.41
273 274 5.943416 CCACCATTGTCCTATTCAAACTGTA 59.057 40.000 0.00 0.00 0.00 2.74
274 275 4.766891 CCACCATTGTCCTATTCAAACTGT 59.233 41.667 0.00 0.00 0.00 3.55
275 276 5.009631 TCCACCATTGTCCTATTCAAACTG 58.990 41.667 0.00 0.00 0.00 3.16
276 277 5.255397 TCCACCATTGTCCTATTCAAACT 57.745 39.130 0.00 0.00 0.00 2.66
277 278 5.476945 AGTTCCACCATTGTCCTATTCAAAC 59.523 40.000 0.00 0.00 0.00 2.93
278 279 5.640147 AGTTCCACCATTGTCCTATTCAAA 58.360 37.500 0.00 0.00 0.00 2.69
279 280 5.255397 AGTTCCACCATTGTCCTATTCAA 57.745 39.130 0.00 0.00 0.00 2.69
280 281 4.927267 AGTTCCACCATTGTCCTATTCA 57.073 40.909 0.00 0.00 0.00 2.57
281 282 5.710099 TCAAAGTTCCACCATTGTCCTATTC 59.290 40.000 0.00 0.00 0.00 1.75
282 283 5.640147 TCAAAGTTCCACCATTGTCCTATT 58.360 37.500 0.00 0.00 0.00 1.73
283 284 5.255397 TCAAAGTTCCACCATTGTCCTAT 57.745 39.130 0.00 0.00 0.00 2.57
284 285 4.651778 CTCAAAGTTCCACCATTGTCCTA 58.348 43.478 0.00 0.00 0.00 2.94
285 286 3.490348 CTCAAAGTTCCACCATTGTCCT 58.510 45.455 0.00 0.00 0.00 3.85
286 287 2.029918 GCTCAAAGTTCCACCATTGTCC 60.030 50.000 0.00 0.00 0.00 4.02
287 288 2.622942 TGCTCAAAGTTCCACCATTGTC 59.377 45.455 0.00 0.00 0.00 3.18
288 289 2.665165 TGCTCAAAGTTCCACCATTGT 58.335 42.857 0.00 0.00 0.00 2.71
289 290 3.731652 TTGCTCAAAGTTCCACCATTG 57.268 42.857 0.00 0.00 0.00 2.82
290 291 3.450457 TGTTTGCTCAAAGTTCCACCATT 59.550 39.130 0.00 0.00 0.00 3.16
291 292 3.030291 TGTTTGCTCAAAGTTCCACCAT 58.970 40.909 0.00 0.00 0.00 3.55
292 293 2.451490 TGTTTGCTCAAAGTTCCACCA 58.549 42.857 0.00 0.00 0.00 4.17
293 294 3.518634 TTGTTTGCTCAAAGTTCCACC 57.481 42.857 0.00 0.00 0.00 4.61
294 295 6.421377 AAAATTGTTTGCTCAAAGTTCCAC 57.579 33.333 0.00 0.00 0.00 4.02
340 341 9.813826 AGCTTTGCCTCCAAAATATATAGTTAT 57.186 29.630 0.00 0.00 40.21 1.89
342 343 9.813826 ATAGCTTTGCCTCCAAAATATATAGTT 57.186 29.630 0.00 0.00 40.21 2.24
343 344 9.454859 GATAGCTTTGCCTCCAAAATATATAGT 57.545 33.333 0.00 0.00 40.21 2.12
344 345 8.897752 GGATAGCTTTGCCTCCAAAATATATAG 58.102 37.037 0.00 0.00 40.21 1.31
345 346 7.834181 GGGATAGCTTTGCCTCCAAAATATATA 59.166 37.037 7.47 0.00 40.21 0.86
346 347 6.665248 GGGATAGCTTTGCCTCCAAAATATAT 59.335 38.462 7.47 0.00 40.21 0.86
347 348 6.010219 GGGATAGCTTTGCCTCCAAAATATA 58.990 40.000 7.47 0.00 40.21 0.86
348 349 4.835056 GGGATAGCTTTGCCTCCAAAATAT 59.165 41.667 7.47 0.00 40.21 1.28
349 350 4.079212 AGGGATAGCTTTGCCTCCAAAATA 60.079 41.667 11.48 0.00 40.21 1.40
350 351 3.033909 GGGATAGCTTTGCCTCCAAAAT 58.966 45.455 7.47 0.00 40.21 1.82
351 352 2.042979 AGGGATAGCTTTGCCTCCAAAA 59.957 45.455 11.48 0.00 40.21 2.44
352 353 1.640670 AGGGATAGCTTTGCCTCCAAA 59.359 47.619 11.48 0.00 38.56 3.28
353 354 1.064463 CAGGGATAGCTTTGCCTCCAA 60.064 52.381 14.28 0.00 34.84 3.53
354 355 0.548031 CAGGGATAGCTTTGCCTCCA 59.452 55.000 14.28 0.00 34.84 3.86
355 356 0.548510 ACAGGGATAGCTTTGCCTCC 59.451 55.000 14.28 2.75 34.84 4.30
356 357 3.560636 TTACAGGGATAGCTTTGCCTC 57.439 47.619 14.28 0.00 34.84 4.70
357 358 5.456763 CCTTATTACAGGGATAGCTTTGCCT 60.457 44.000 11.48 11.48 38.07 4.75
358 359 4.762251 CCTTATTACAGGGATAGCTTTGCC 59.238 45.833 6.60 6.60 0.00 4.52
359 360 5.621193 TCCTTATTACAGGGATAGCTTTGC 58.379 41.667 0.00 0.00 34.24 3.68
360 361 7.015682 TCTCTCCTTATTACAGGGATAGCTTTG 59.984 40.741 0.00 0.00 34.24 2.77
361 362 7.076446 TCTCTCCTTATTACAGGGATAGCTTT 58.924 38.462 0.00 0.00 34.24 3.51
362 363 6.625267 TCTCTCCTTATTACAGGGATAGCTT 58.375 40.000 0.00 0.00 34.24 3.74
363 364 6.220881 TCTCTCCTTATTACAGGGATAGCT 57.779 41.667 0.00 0.00 34.24 3.32
364 365 6.919775 TTCTCTCCTTATTACAGGGATAGC 57.080 41.667 0.00 0.00 34.24 2.97
365 366 8.929487 AGTTTTCTCTCCTTATTACAGGGATAG 58.071 37.037 0.00 0.00 34.24 2.08
366 367 8.855804 AGTTTTCTCTCCTTATTACAGGGATA 57.144 34.615 0.00 0.00 34.24 2.59
367 368 7.418025 CGAGTTTTCTCTCCTTATTACAGGGAT 60.418 40.741 0.00 0.00 44.16 3.85
368 369 6.127423 CGAGTTTTCTCTCCTTATTACAGGGA 60.127 42.308 0.00 0.00 44.16 4.20
369 370 6.043411 CGAGTTTTCTCTCCTTATTACAGGG 58.957 44.000 0.00 0.00 44.16 4.45
370 371 6.864342 TCGAGTTTTCTCTCCTTATTACAGG 58.136 40.000 0.00 0.00 44.16 4.00
371 372 8.934507 ATTCGAGTTTTCTCTCCTTATTACAG 57.065 34.615 0.00 0.00 44.16 2.74
372 373 9.798994 GTATTCGAGTTTTCTCTCCTTATTACA 57.201 33.333 0.00 0.00 44.16 2.41
373 374 9.798994 TGTATTCGAGTTTTCTCTCCTTATTAC 57.201 33.333 0.00 0.00 44.16 1.89
375 376 8.750298 TCTGTATTCGAGTTTTCTCTCCTTATT 58.250 33.333 0.00 0.00 44.16 1.40
376 377 8.294954 TCTGTATTCGAGTTTTCTCTCCTTAT 57.705 34.615 0.00 0.00 44.16 1.73
377 378 7.698506 TCTGTATTCGAGTTTTCTCTCCTTA 57.301 36.000 0.00 0.00 44.16 2.69
378 379 6.591750 TCTGTATTCGAGTTTTCTCTCCTT 57.408 37.500 0.00 0.00 44.16 3.36
379 380 6.591750 TTCTGTATTCGAGTTTTCTCTCCT 57.408 37.500 0.00 0.00 44.16 3.69
380 381 7.653767 TTTTCTGTATTCGAGTTTTCTCTCC 57.346 36.000 0.00 0.00 44.16 3.71
381 382 8.548721 TGTTTTTCTGTATTCGAGTTTTCTCTC 58.451 33.333 0.00 0.00 44.16 3.20
382 383 8.336080 GTGTTTTTCTGTATTCGAGTTTTCTCT 58.664 33.333 0.00 0.00 44.16 3.10
383 384 7.586664 GGTGTTTTTCTGTATTCGAGTTTTCTC 59.413 37.037 0.00 0.00 43.01 2.87
384 385 7.415229 GGTGTTTTTCTGTATTCGAGTTTTCT 58.585 34.615 0.00 0.00 0.00 2.52
385 386 6.635641 GGGTGTTTTTCTGTATTCGAGTTTTC 59.364 38.462 0.00 0.00 0.00 2.29
386 387 6.095720 TGGGTGTTTTTCTGTATTCGAGTTTT 59.904 34.615 0.00 0.00 0.00 2.43
387 388 5.591067 TGGGTGTTTTTCTGTATTCGAGTTT 59.409 36.000 0.00 0.00 0.00 2.66
388 389 5.127491 TGGGTGTTTTTCTGTATTCGAGTT 58.873 37.500 0.00 0.00 0.00 3.01
389 390 4.710324 TGGGTGTTTTTCTGTATTCGAGT 58.290 39.130 0.00 0.00 0.00 4.18
390 391 5.880054 ATGGGTGTTTTTCTGTATTCGAG 57.120 39.130 0.00 0.00 0.00 4.04
391 392 6.128117 GCTTATGGGTGTTTTTCTGTATTCGA 60.128 38.462 0.00 0.00 0.00 3.71
392 393 6.027749 GCTTATGGGTGTTTTTCTGTATTCG 58.972 40.000 0.00 0.00 0.00 3.34
393 394 7.158099 AGCTTATGGGTGTTTTTCTGTATTC 57.842 36.000 0.00 0.00 0.00 1.75
394 395 7.539034 AAGCTTATGGGTGTTTTTCTGTATT 57.461 32.000 0.00 0.00 0.00 1.89
395 396 7.539034 AAAGCTTATGGGTGTTTTTCTGTAT 57.461 32.000 0.00 0.00 0.00 2.29
396 397 6.969993 AAAGCTTATGGGTGTTTTTCTGTA 57.030 33.333 0.00 0.00 0.00 2.74
397 398 5.869649 AAAGCTTATGGGTGTTTTTCTGT 57.130 34.783 0.00 0.00 0.00 3.41
398 399 8.739972 AGTATAAAGCTTATGGGTGTTTTTCTG 58.260 33.333 0.00 0.00 0.00 3.02
399 400 8.739972 CAGTATAAAGCTTATGGGTGTTTTTCT 58.260 33.333 0.00 0.00 0.00 2.52
400 401 7.488150 GCAGTATAAAGCTTATGGGTGTTTTTC 59.512 37.037 0.00 0.00 0.00 2.29
401 402 7.039363 TGCAGTATAAAGCTTATGGGTGTTTTT 60.039 33.333 0.00 0.00 0.00 1.94
402 403 6.435904 TGCAGTATAAAGCTTATGGGTGTTTT 59.564 34.615 0.00 0.00 0.00 2.43
403 404 5.949354 TGCAGTATAAAGCTTATGGGTGTTT 59.051 36.000 0.00 0.00 0.00 2.83
404 405 5.505780 TGCAGTATAAAGCTTATGGGTGTT 58.494 37.500 0.00 0.00 0.00 3.32
405 406 5.110814 TGCAGTATAAAGCTTATGGGTGT 57.889 39.130 0.00 0.00 0.00 4.16
406 407 5.764686 TGATGCAGTATAAAGCTTATGGGTG 59.235 40.000 0.00 0.00 0.00 4.61
407 408 5.765182 GTGATGCAGTATAAAGCTTATGGGT 59.235 40.000 0.00 0.00 0.00 4.51
408 409 6.000219 AGTGATGCAGTATAAAGCTTATGGG 59.000 40.000 0.00 0.00 0.00 4.00
409 410 6.707608 TCAGTGATGCAGTATAAAGCTTATGG 59.292 38.462 0.00 0.00 0.00 2.74
410 411 7.719778 TCAGTGATGCAGTATAAAGCTTATG 57.280 36.000 0.00 0.00 0.00 1.90
411 412 8.915057 AATCAGTGATGCAGTATAAAGCTTAT 57.085 30.769 6.34 0.00 0.00 1.73
412 413 8.615211 CAAATCAGTGATGCAGTATAAAGCTTA 58.385 33.333 6.34 0.00 0.00 3.09
413 414 7.121759 ACAAATCAGTGATGCAGTATAAAGCTT 59.878 33.333 6.34 0.00 0.00 3.74
414 415 6.600822 ACAAATCAGTGATGCAGTATAAAGCT 59.399 34.615 6.34 0.00 0.00 3.74
415 416 6.789262 ACAAATCAGTGATGCAGTATAAAGC 58.211 36.000 6.34 0.00 0.00 3.51
416 417 7.699391 CCAACAAATCAGTGATGCAGTATAAAG 59.301 37.037 6.34 0.00 0.00 1.85
417 418 7.392953 TCCAACAAATCAGTGATGCAGTATAAA 59.607 33.333 6.34 0.00 0.00 1.40
418 419 6.883756 TCCAACAAATCAGTGATGCAGTATAA 59.116 34.615 6.34 0.00 0.00 0.98
419 420 6.413892 TCCAACAAATCAGTGATGCAGTATA 58.586 36.000 6.34 0.00 0.00 1.47
420 421 5.255687 TCCAACAAATCAGTGATGCAGTAT 58.744 37.500 6.34 0.00 0.00 2.12
421 422 4.650734 TCCAACAAATCAGTGATGCAGTA 58.349 39.130 6.34 0.00 0.00 2.74
422 423 3.489355 TCCAACAAATCAGTGATGCAGT 58.511 40.909 6.34 3.06 0.00 4.40
423 424 4.022589 AGTTCCAACAAATCAGTGATGCAG 60.023 41.667 6.34 2.41 0.00 4.41
424 425 3.890756 AGTTCCAACAAATCAGTGATGCA 59.109 39.130 6.34 0.00 0.00 3.96
425 426 4.232221 CAGTTCCAACAAATCAGTGATGC 58.768 43.478 6.34 0.00 0.00 3.91
426 427 5.443185 ACAGTTCCAACAAATCAGTGATG 57.557 39.130 6.34 0.00 0.00 3.07
427 428 6.998074 TCTAACAGTTCCAACAAATCAGTGAT 59.002 34.615 0.00 0.00 0.00 3.06
428 429 6.353323 TCTAACAGTTCCAACAAATCAGTGA 58.647 36.000 0.00 0.00 0.00 3.41
429 430 6.618287 TCTAACAGTTCCAACAAATCAGTG 57.382 37.500 0.00 0.00 0.00 3.66
430 431 6.601613 TGTTCTAACAGTTCCAACAAATCAGT 59.398 34.615 7.29 0.00 34.30 3.41
431 432 7.026631 TGTTCTAACAGTTCCAACAAATCAG 57.973 36.000 7.29 0.00 34.30 2.90
534 535 1.272648 CCCATATTCCATCGGGCCAAT 60.273 52.381 4.39 0.00 0.00 3.16
552 553 3.004752 ACCATGTTATGAAGTGAGCCC 57.995 47.619 0.00 0.00 0.00 5.19
673 714 1.611673 GCAGCAGCTACCAGGAAGAAA 60.612 52.381 0.00 0.00 37.91 2.52
808 868 0.896923 CAGCAGCAGAGAAGAGGAGT 59.103 55.000 0.00 0.00 0.00 3.85
931 994 1.961378 CACAGCTTGATGGCAGCAA 59.039 52.632 18.13 18.13 34.17 3.91
1098 1161 2.611800 AGCTGGCCCCTCATGTGA 60.612 61.111 0.00 0.00 0.00 3.58
1514 1582 1.912043 CTCCCAGAGAGTCCAATTGGT 59.088 52.381 23.76 5.78 37.87 3.67
1559 1627 0.894141 AGCTTGTTGCCACACACAAA 59.106 45.000 0.00 0.00 44.23 2.83
1567 1635 0.110295 TCCAGCTTAGCTTGTTGCCA 59.890 50.000 3.00 0.00 44.23 4.92
1595 1663 2.713877 GAGTGAGGAAGTCGTAGAGGT 58.286 52.381 0.00 0.00 36.95 3.85
1697 1765 2.060980 ACCTCCTCAGATCGCACCC 61.061 63.158 0.00 0.00 0.00 4.61
1816 1884 2.706190 AGAAAGCACTAGTGGAGGTTGT 59.294 45.455 23.95 2.39 0.00 3.32
2162 2230 1.819288 CTGTAAGAGGAGAAGGCACGA 59.181 52.381 0.00 0.00 34.07 4.35
2237 2305 3.149196 GCAGGGACATGAAAAGAAGACA 58.851 45.455 0.00 0.00 0.00 3.41
2299 2367 3.181454 CCCAAGTCAGTAAGTTGACCAGT 60.181 47.826 2.76 0.00 46.81 4.00
2364 2432 1.654954 CCAGAGTCCCCGTACGACAG 61.655 65.000 18.76 4.76 32.41 3.51
2365 2433 1.676635 CCAGAGTCCCCGTACGACA 60.677 63.158 18.76 0.00 32.41 4.35
2398 2466 2.580815 CTGAGAGTCATGGCGCCA 59.419 61.111 34.80 34.80 0.00 5.69
2567 2635 4.724279 ACACCACTCCTAACCAAAGAAT 57.276 40.909 0.00 0.00 0.00 2.40
2724 2796 1.989706 CCTTTCGAAACAAAGGGGGA 58.010 50.000 6.47 0.00 46.21 4.81
2933 3008 2.427506 GTACCCTGTTCAGCAAGGAAG 58.572 52.381 0.00 0.00 32.96 3.46
3006 3081 2.183478 AGGACGTGATGATGTTTGCA 57.817 45.000 0.00 0.00 0.00 4.08
3197 3272 3.625649 ACAAAACAGGCACAACCAAAT 57.374 38.095 0.00 0.00 43.14 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.