Multiple sequence alignment - TraesCS4B01G021400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G021400 chr4B 100.000 6052 0 0 1 6052 15422234 15416183 0.000000e+00 11177.0
1 TraesCS4B01G021400 chr4B 99.538 2380 10 1 847 3226 14533887 14531509 0.000000e+00 4333.0
2 TraesCS4B01G021400 chr4B 98.385 2229 24 3 3340 5568 14531510 14529294 0.000000e+00 3906.0
3 TraesCS4B01G021400 chr4B 86.627 830 85 15 1 808 14656171 14655346 0.000000e+00 894.0
4 TraesCS4B01G021400 chr4B 99.388 490 1 1 5563 6052 14529263 14528776 0.000000e+00 887.0
5 TraesCS4B01G021400 chr4B 95.312 128 6 0 3216 3343 422040245 422040372 2.860000e-48 204.0
6 TraesCS4B01G021400 chr4B 98.851 87 1 0 4378 4464 14530430 14530344 8.120000e-34 156.0
7 TraesCS4B01G021400 chr4B 98.851 87 1 0 4420 4506 14530472 14530386 8.120000e-34 156.0
8 TraesCS4B01G021400 chr4B 98.851 87 1 0 4378 4464 15417815 15417729 8.120000e-34 156.0
9 TraesCS4B01G021400 chr4B 98.851 87 1 0 4420 4506 15417857 15417771 8.120000e-34 156.0
10 TraesCS4B01G021400 chr4B 93.976 83 5 0 855 937 14565409 14565327 6.370000e-25 126.0
11 TraesCS4B01G021400 chr4B 97.778 45 1 0 4378 4422 14530388 14530344 1.810000e-10 78.7
12 TraesCS4B01G021400 chr4B 97.778 45 1 0 4462 4506 14530472 14530428 1.810000e-10 78.7
13 TraesCS4B01G021400 chr4B 97.778 45 1 0 4378 4422 15417773 15417729 1.810000e-10 78.7
14 TraesCS4B01G021400 chr4B 97.778 45 1 0 4462 4506 15417857 15417813 1.810000e-10 78.7
15 TraesCS4B01G021400 chr5D 91.107 2114 141 13 939 3012 532279008 532276902 0.000000e+00 2819.0
16 TraesCS4B01G021400 chr5D 95.077 1097 34 9 3340 4422 532276650 532275560 0.000000e+00 1709.0
17 TraesCS4B01G021400 chr5D 95.221 565 18 1 4463 5027 532275603 532275048 0.000000e+00 885.0
18 TraesCS4B01G021400 chr5D 79.589 730 107 28 1004 1707 534605574 534606287 9.120000e-133 484.0
19 TraesCS4B01G021400 chr5D 96.207 290 8 1 5279 5568 532274457 532274171 7.100000e-129 472.0
20 TraesCS4B01G021400 chr5D 76.247 922 164 46 1022 1911 532248792 532247894 7.200000e-119 438.0
21 TraesCS4B01G021400 chr5D 99.095 221 2 0 3006 3226 532276869 532276649 1.220000e-106 398.0
22 TraesCS4B01G021400 chr5D 91.085 258 13 3 5563 5817 532274140 532273890 2.090000e-89 340.0
23 TraesCS4B01G021400 chr5D 74.153 886 167 32 1046 1894 532244150 532243290 1.640000e-80 311.0
24 TraesCS4B01G021400 chr5D 93.711 159 3 1 5814 5972 532273785 532273634 1.310000e-56 231.0
25 TraesCS4B01G021400 chr5D 97.727 44 1 0 4421 4464 532275603 532275560 6.500000e-10 76.8
26 TraesCS4B01G021400 chr5D 91.111 45 4 0 2041 2085 534606657 534606701 1.820000e-05 62.1
27 TraesCS4B01G021400 chr4A 90.123 2116 157 14 939 3012 639993428 639995533 0.000000e+00 2702.0
28 TraesCS4B01G021400 chr4A 96.084 1098 28 7 3340 4422 639995784 639996881 0.000000e+00 1775.0
29 TraesCS4B01G021400 chr4A 96.637 565 19 0 4463 5027 639996838 639997402 0.000000e+00 939.0
30 TraesCS4B01G021400 chr4A 89.351 601 51 6 936 1527 639954695 639955291 0.000000e+00 743.0
31 TraesCS4B01G021400 chr4A 91.841 478 26 5 933 1404 639961987 639962457 0.000000e+00 654.0
32 TraesCS4B01G021400 chr4A 75.018 1365 248 58 1014 2321 637247505 637246177 4.120000e-151 545.0
33 TraesCS4B01G021400 chr4A 95.208 313 12 1 5253 5565 639997817 639998126 5.450000e-135 492.0
34 TraesCS4B01G021400 chr4A 74.586 1208 205 75 1010 2148 640001126 639999952 2.590000e-118 436.0
35 TraesCS4B01G021400 chr4A 98.190 221 3 1 3006 3226 639995566 639995785 9.520000e-103 385.0
36 TraesCS4B01G021400 chr4A 92.636 258 13 3 5563 5817 639998160 639998414 3.450000e-97 366.0
37 TraesCS4B01G021400 chr4A 78.333 600 103 23 1011 1599 639986194 639986777 4.460000e-96 363.0
38 TraesCS4B01G021400 chr4A 78.340 494 73 9 4462 4945 637204271 637203802 7.670000e-74 289.0
39 TraesCS4B01G021400 chr4A 91.195 159 7 1 5814 5972 639998768 639998919 6.150000e-50 209.0
40 TraesCS4B01G021400 chr4A 80.645 279 35 10 4161 4422 637204503 637204227 1.330000e-46 198.0
41 TraesCS4B01G021400 chr4A 100.000 44 0 0 4421 4464 639996838 639996881 1.400000e-11 82.4
42 TraesCS4B01G021400 chr4A 91.525 59 4 1 5955 6012 639999033 639998975 5.030000e-11 80.5
43 TraesCS4B01G021400 chr4A 92.857 42 3 0 2044 2085 636982869 636982828 1.820000e-05 62.1
44 TraesCS4B01G021400 chr5B 89.546 2114 149 23 936 3012 671714382 671712304 0.000000e+00 2614.0
45 TraesCS4B01G021400 chr5B 95.537 1098 34 7 3340 4422 671712052 671710955 0.000000e+00 1742.0
46 TraesCS4B01G021400 chr5B 86.314 1096 110 26 3346 4422 671494367 671495441 0.000000e+00 1157.0
47 TraesCS4B01G021400 chr5B 96.283 565 21 0 4463 5027 671710998 671710434 0.000000e+00 928.0
48 TraesCS4B01G021400 chr5B 87.468 790 86 4 1632 2408 671487667 671488456 0.000000e+00 898.0
49 TraesCS4B01G021400 chr5B 89.449 635 53 7 960 1587 671487038 671487665 0.000000e+00 789.0
50 TraesCS4B01G021400 chr5B 88.584 473 42 5 4525 4985 671495436 671495908 1.140000e-156 564.0
51 TraesCS4B01G021400 chr5B 83.564 578 58 16 2462 3012 671493732 671494299 1.950000e-139 507.0
52 TraesCS4B01G021400 chr5B 77.821 780 145 17 1539 2301 671503268 671504036 1.990000e-124 457.0
53 TraesCS4B01G021400 chr5B 83.603 494 66 5 3567 4052 671505956 671506442 3.330000e-122 449.0
54 TraesCS4B01G021400 chr5B 80.547 622 76 24 2428 3012 671504109 671504722 2.590000e-118 436.0
55 TraesCS4B01G021400 chr5B 98.190 221 4 0 3006 3226 671712271 671712051 2.650000e-103 387.0
56 TraesCS4B01G021400 chr5B 88.760 258 16 3 5563 5817 671709529 671709282 2.740000e-78 303.0
57 TraesCS4B01G021400 chr5B 94.340 159 2 1 5814 5972 671708932 671708781 2.820000e-58 237.0
58 TraesCS4B01G021400 chr5B 93.960 149 9 0 5420 5568 671709708 671709560 6.100000e-55 226.0
59 TraesCS4B01G021400 chr5B 81.746 126 18 3 1770 1891 671360060 671360184 3.860000e-17 100.0
60 TraesCS4B01G021400 chr5B 100.000 44 0 0 4421 4464 671710998 671710955 1.400000e-11 82.4
61 TraesCS4B01G021400 chr5B 91.111 45 4 0 2041 2085 674657071 674657115 1.820000e-05 62.1
62 TraesCS4B01G021400 chrUn 100.000 392 0 0 2835 3226 479679390 479678999 0.000000e+00 725.0
63 TraesCS4B01G021400 chr4D 82.586 758 107 18 1 736 8002646 8003400 0.000000e+00 645.0
64 TraesCS4B01G021400 chr4D 80.672 714 81 23 113 808 8139283 8138609 9.060000e-138 501.0
65 TraesCS4B01G021400 chr4D 96.000 50 2 0 759 808 8003397 8003446 1.400000e-11 82.4
66 TraesCS4B01G021400 chr2D 91.304 345 30 0 2196 2540 605563119 605562775 7.100000e-129 472.0
67 TraesCS4B01G021400 chr2D 96.241 133 4 1 5073 5205 340252871 340252740 3.670000e-52 217.0
68 TraesCS4B01G021400 chr2D 91.503 153 10 3 5059 5209 313226165 313226316 2.210000e-49 207.0
69 TraesCS4B01G021400 chr2D 91.860 86 6 1 852 936 2661757 2661842 1.070000e-22 119.0
70 TraesCS4B01G021400 chr2D 90.909 66 6 0 1832 1897 647274495 647274430 8.350000e-14 89.8
71 TraesCS4B01G021400 chr7D 94.286 140 7 1 5072 5211 234351220 234351358 4.750000e-51 213.0
72 TraesCS4B01G021400 chr7D 98.305 118 2 0 3224 3341 579147040 579147157 2.210000e-49 207.0
73 TraesCS4B01G021400 chr7A 94.326 141 5 3 5063 5203 330446926 330447063 4.750000e-51 213.0
74 TraesCS4B01G021400 chr7A 96.800 125 3 1 3221 3344 491263282 491263158 2.210000e-49 207.0
75 TraesCS4B01G021400 chr3D 94.286 140 7 1 5075 5214 496172883 496172745 4.750000e-51 213.0
76 TraesCS4B01G021400 chr5A 96.154 130 4 1 5076 5205 462868768 462868896 1.710000e-50 211.0
77 TraesCS4B01G021400 chr3B 98.333 120 2 0 3222 3341 466631646 466631765 1.710000e-50 211.0
78 TraesCS4B01G021400 chr3B 98.291 117 2 0 3225 3341 600907150 600907266 7.950000e-49 206.0
79 TraesCS4B01G021400 chr6B 98.305 118 2 0 3225 3342 181705162 181705045 2.210000e-49 207.0
80 TraesCS4B01G021400 chr1B 97.521 121 3 0 3224 3344 622183947 622183827 2.210000e-49 207.0
81 TraesCS4B01G021400 chr7B 91.946 149 9 3 5075 5222 372834982 372835128 7.950000e-49 206.0
82 TraesCS4B01G021400 chr7B 96.032 126 3 2 3216 3341 692308698 692308821 2.860000e-48 204.0
83 TraesCS4B01G021400 chr7B 88.957 163 14 4 5046 5208 656518082 656518240 1.330000e-46 198.0
84 TraesCS4B01G021400 chr2B 97.436 117 3 0 3225 3341 788660475 788660359 3.700000e-47 200.0
85 TraesCS4B01G021400 chr1A 89.394 66 7 0 1832 1897 16301131 16301066 3.890000e-12 84.2
86 TraesCS4B01G021400 chr1A 89.394 66 7 0 1832 1897 16379002 16378937 3.890000e-12 84.2
87 TraesCS4B01G021400 chr1A 100.000 28 0 0 149 176 291222347 291222374 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G021400 chr4B 15416183 15422234 6051 True 11177.000000 11177 100.000000 1 6052 1 chr4B.!!$R3 6051
1 TraesCS4B01G021400 chr4B 14528776 14533887 5111 True 1370.771429 4333 98.652714 847 6052 7 chr4B.!!$R4 5205
2 TraesCS4B01G021400 chr4B 14655346 14656171 825 True 894.000000 894 86.627000 1 808 1 chr4B.!!$R2 807
3 TraesCS4B01G021400 chr5D 532273634 532279008 5374 True 866.350000 2819 94.903750 939 5972 8 chr5D.!!$R2 5033
4 TraesCS4B01G021400 chr5D 532243290 532248792 5502 True 374.500000 438 75.200000 1022 1911 2 chr5D.!!$R1 889
5 TraesCS4B01G021400 chr5D 534605574 534606701 1127 False 273.050000 484 85.350000 1004 2085 2 chr5D.!!$F1 1081
6 TraesCS4B01G021400 chr4A 639993428 639998919 5491 False 868.800000 2702 95.009125 939 5972 8 chr4A.!!$F4 5033
7 TraesCS4B01G021400 chr4A 639954695 639955291 596 False 743.000000 743 89.351000 936 1527 1 chr4A.!!$F1 591
8 TraesCS4B01G021400 chr4A 637246177 637247505 1328 True 545.000000 545 75.018000 1014 2321 1 chr4A.!!$R2 1307
9 TraesCS4B01G021400 chr4A 639986194 639986777 583 False 363.000000 363 78.333000 1011 1599 1 chr4A.!!$F3 588
10 TraesCS4B01G021400 chr4A 639998975 640001126 2151 True 258.250000 436 83.055500 1010 6012 2 chr4A.!!$R4 5002
11 TraesCS4B01G021400 chr4A 637203802 637204503 701 True 243.500000 289 79.492500 4161 4945 2 chr4A.!!$R3 784
12 TraesCS4B01G021400 chr5B 671487038 671488456 1418 False 843.500000 898 88.458500 960 2408 2 chr5B.!!$F3 1448
13 TraesCS4B01G021400 chr5B 671708781 671714382 5601 True 814.925000 2614 94.577000 936 5972 8 chr5B.!!$R1 5036
14 TraesCS4B01G021400 chr5B 671493732 671495908 2176 False 742.666667 1157 86.154000 2462 4985 3 chr5B.!!$F4 2523
15 TraesCS4B01G021400 chr5B 671503268 671506442 3174 False 447.333333 457 80.657000 1539 4052 3 chr5B.!!$F5 2513
16 TraesCS4B01G021400 chr4D 8138609 8139283 674 True 501.000000 501 80.672000 113 808 1 chr4D.!!$R1 695
17 TraesCS4B01G021400 chr4D 8002646 8003446 800 False 363.700000 645 89.293000 1 808 2 chr4D.!!$F1 807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 329 0.320771 CGTTTGGGAGACTGTGAGGG 60.321 60.000 0.00 0.00 0.00 4.30 F
818 862 0.533491 CCGATGACCCGAAAGTACCA 59.467 55.000 0.00 0.00 0.00 3.25 F
819 863 1.138266 CCGATGACCCGAAAGTACCAT 59.862 52.381 0.00 0.00 0.00 3.55 F
820 864 2.419574 CCGATGACCCGAAAGTACCATT 60.420 50.000 0.00 0.00 0.00 3.16 F
835 879 2.557869 ACCATTACTAACTCCAGCCCA 58.442 47.619 0.00 0.00 0.00 5.36 F
2567 2803 2.736347 TGAGGGGTTAGTGAGTCTAGC 58.264 52.381 0.00 0.00 0.00 3.42 F
3337 3936 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 2324 2.242043 CTTCCCAGTTGTTTCAGCCAT 58.758 47.619 0.00 0.00 0.00 4.40 R
2567 2803 3.195610 TGTTGTCAGGTCATACTGGCTAG 59.804 47.826 0.00 0.00 43.34 3.42 R
3228 3827 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30 R
3229 3828 3.056107 TGACAAGTATTTCCAGACGGAGG 60.056 47.826 0.00 0.00 44.10 4.30 R
3230 3829 4.188247 TGACAAGTATTTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63 R
3739 5934 4.141298 ACATTTTCCAGGCCAAATCCAAAA 60.141 37.500 5.01 1.49 0.00 2.44 R
5643 9855 2.289320 CCTTGTCCAGACTTCTCACCTG 60.289 54.545 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.713762 TTTGGAGGAAATGGCATATTAGTG 57.286 37.500 0.00 0.00 0.00 2.74
50 53 6.960992 GCCTTTTTGTTTTGATTTTGAGTGAC 59.039 34.615 0.00 0.00 0.00 3.67
71 77 8.812972 AGTGACCATCTAGAAAGTGTATTGTTA 58.187 33.333 0.00 0.00 0.00 2.41
72 78 9.601217 GTGACCATCTAGAAAGTGTATTGTTAT 57.399 33.333 0.00 0.00 0.00 1.89
93 106 3.495670 TGACCGGTTGTTTGTCTTTTG 57.504 42.857 9.42 0.00 0.00 2.44
96 109 2.094442 ACCGGTTGTTTGTCTTTTGTGG 60.094 45.455 0.00 0.00 0.00 4.17
98 111 3.434637 CGGTTGTTTGTCTTTTGTGGAG 58.565 45.455 0.00 0.00 0.00 3.86
117 130 7.695055 TGTGGAGAAGGGTTTGAATCTATTAA 58.305 34.615 0.00 0.00 0.00 1.40
143 160 7.966246 AAAATTCATCATAAGTGCAAAGCAA 57.034 28.000 0.00 0.00 41.47 3.91
177 196 4.837093 AAAATTACATCGAGGTCCCTGA 57.163 40.909 5.75 0.00 0.00 3.86
180 199 5.373812 AATTACATCGAGGTCCCTGAATT 57.626 39.130 5.75 3.94 0.00 2.17
183 202 3.375699 ACATCGAGGTCCCTGAATTACT 58.624 45.455 0.00 0.00 0.00 2.24
185 204 3.095912 TCGAGGTCCCTGAATTACTGA 57.904 47.619 0.00 0.00 0.00 3.41
189 208 2.236395 AGGTCCCTGAATTACTGAACGG 59.764 50.000 0.00 0.00 0.00 4.44
242 261 3.450457 TGGTGACAACTTTTCATGCCTTT 59.550 39.130 0.00 0.00 37.44 3.11
243 262 3.803778 GGTGACAACTTTTCATGCCTTTG 59.196 43.478 0.00 0.00 0.00 2.77
301 320 0.882927 CTTTGGCGTCGTTTGGGAGA 60.883 55.000 0.00 0.00 0.00 3.71
310 329 0.320771 CGTTTGGGAGACTGTGAGGG 60.321 60.000 0.00 0.00 0.00 4.30
323 342 1.932231 TGAGGGTAGGTCTCCCCGA 60.932 63.158 0.00 0.00 46.17 5.14
339 358 2.700897 CCCCGAATCTGTCTAGTTGGAT 59.299 50.000 0.00 0.00 0.00 3.41
417 440 1.021390 CATCGGCGTCTTCTGGCTTT 61.021 55.000 6.85 0.00 0.00 3.51
421 444 0.884704 GGCGTCTTCTGGCTTTGACA 60.885 55.000 0.00 0.00 0.00 3.58
465 488 1.275573 GACAACGCTTCCCTTACTCCT 59.724 52.381 0.00 0.00 0.00 3.69
480 503 6.325028 CCCTTACTCCTATCATGTTTCAGAGA 59.675 42.308 0.00 0.00 0.00 3.10
487 510 6.612863 TCCTATCATGTTTCAGAGATCCAGAA 59.387 38.462 0.00 0.00 0.00 3.02
490 513 9.339850 CTATCATGTTTCAGAGATCCAGAAATT 57.660 33.333 7.73 0.00 34.23 1.82
493 516 5.072055 TGTTTCAGAGATCCAGAAATTGCA 58.928 37.500 7.73 0.00 34.23 4.08
511 534 1.651138 GCATCGAACTTCACTCACGAG 59.349 52.381 0.00 0.00 36.49 4.18
537 561 4.821589 GGCGAGTGCGGAGGAAGG 62.822 72.222 0.00 0.00 44.10 3.46
575 601 5.278463 CCCAAGGACATCTGTGTAACTTTTG 60.278 44.000 0.00 0.00 39.09 2.44
654 696 2.890808 TCTCATGATGGCGGTAACTC 57.109 50.000 0.00 0.00 0.00 3.01
736 779 9.341899 GTTTTACTCAAAGGTTAAGCATACATG 57.658 33.333 7.52 0.00 0.00 3.21
740 783 4.947388 TCAAAGGTTAAGCATACATGGGTC 59.053 41.667 7.52 0.00 0.00 4.46
752 796 0.796312 CATGGGTCGTTTTCCTGTCG 59.204 55.000 0.00 0.00 0.00 4.35
754 798 2.322830 GGGTCGTTTTCCTGTCGCC 61.323 63.158 0.00 0.00 0.00 5.54
757 801 4.424430 CGTTTTCCTGTCGCCGCG 62.424 66.667 6.39 6.39 0.00 6.46
816 860 1.918595 GTCCGATGACCCGAAAGTAC 58.081 55.000 0.00 0.00 35.34 2.73
817 861 0.819582 TCCGATGACCCGAAAGTACC 59.180 55.000 0.00 0.00 0.00 3.34
818 862 0.533491 CCGATGACCCGAAAGTACCA 59.467 55.000 0.00 0.00 0.00 3.25
819 863 1.138266 CCGATGACCCGAAAGTACCAT 59.862 52.381 0.00 0.00 0.00 3.55
820 864 2.419574 CCGATGACCCGAAAGTACCATT 60.420 50.000 0.00 0.00 0.00 3.16
821 865 3.181473 CCGATGACCCGAAAGTACCATTA 60.181 47.826 0.00 0.00 0.00 1.90
822 866 3.800506 CGATGACCCGAAAGTACCATTAC 59.199 47.826 0.00 0.00 0.00 1.89
823 867 4.441079 CGATGACCCGAAAGTACCATTACT 60.441 45.833 0.00 0.00 40.55 2.24
824 868 5.221106 CGATGACCCGAAAGTACCATTACTA 60.221 44.000 0.00 0.00 37.59 1.82
825 869 5.999205 TGACCCGAAAGTACCATTACTAA 57.001 39.130 0.00 0.00 37.59 2.24
826 870 5.723295 TGACCCGAAAGTACCATTACTAAC 58.277 41.667 0.00 0.00 37.59 2.34
827 871 5.481473 TGACCCGAAAGTACCATTACTAACT 59.519 40.000 0.00 0.00 37.59 2.24
828 872 5.970592 ACCCGAAAGTACCATTACTAACTC 58.029 41.667 0.00 0.00 37.59 3.01
829 873 5.105187 ACCCGAAAGTACCATTACTAACTCC 60.105 44.000 0.00 0.00 37.59 3.85
830 874 5.105228 CCCGAAAGTACCATTACTAACTCCA 60.105 44.000 0.00 0.00 37.59 3.86
831 875 6.040878 CCGAAAGTACCATTACTAACTCCAG 58.959 44.000 0.00 0.00 37.59 3.86
832 876 5.519206 CGAAAGTACCATTACTAACTCCAGC 59.481 44.000 0.00 0.00 37.59 4.85
833 877 5.354842 AAGTACCATTACTAACTCCAGCC 57.645 43.478 0.00 0.00 37.59 4.85
834 878 3.710165 AGTACCATTACTAACTCCAGCCC 59.290 47.826 0.00 0.00 36.73 5.19
835 879 2.557869 ACCATTACTAACTCCAGCCCA 58.442 47.619 0.00 0.00 0.00 5.36
836 880 3.123273 ACCATTACTAACTCCAGCCCAT 58.877 45.455 0.00 0.00 0.00 4.00
837 881 3.117888 ACCATTACTAACTCCAGCCCATG 60.118 47.826 0.00 0.00 0.00 3.66
845 889 4.770540 CCAGCCCATGGTGTGAAT 57.229 55.556 11.73 0.00 44.91 2.57
2377 2575 6.139679 TGGATAGTTTGTGGGAAAGAAGAT 57.860 37.500 0.00 0.00 0.00 2.40
2567 2803 2.736347 TGAGGGGTTAGTGAGTCTAGC 58.264 52.381 0.00 0.00 0.00 3.42
3234 3833 4.354893 ACTGTAGTATCTACTCCCTCCG 57.645 50.000 8.13 0.00 37.73 4.63
3235 3834 3.715834 ACTGTAGTATCTACTCCCTCCGT 59.284 47.826 8.13 0.00 37.73 4.69
3236 3835 4.202346 ACTGTAGTATCTACTCCCTCCGTC 60.202 50.000 8.13 0.00 37.73 4.79
3237 3836 3.972638 TGTAGTATCTACTCCCTCCGTCT 59.027 47.826 8.13 0.00 37.73 4.18
3238 3837 3.495434 AGTATCTACTCCCTCCGTCTG 57.505 52.381 0.00 0.00 0.00 3.51
3239 3838 2.106857 AGTATCTACTCCCTCCGTCTGG 59.893 54.545 0.00 0.00 0.00 3.86
3240 3839 1.223501 ATCTACTCCCTCCGTCTGGA 58.776 55.000 0.00 0.00 43.88 3.86
3241 3840 0.997363 TCTACTCCCTCCGTCTGGAA 59.003 55.000 0.00 0.00 45.87 3.53
3242 3841 1.356738 TCTACTCCCTCCGTCTGGAAA 59.643 52.381 0.00 0.00 45.87 3.13
3243 3842 2.024273 TCTACTCCCTCCGTCTGGAAAT 60.024 50.000 0.00 0.00 45.87 2.17
3244 3843 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
3245 3844 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
3246 3845 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
3247 3846 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
3248 3847 2.500098 TCCCTCCGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 45.87 3.16
3249 3848 2.236395 CCCTCCGTCTGGAAATACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
3250 3849 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
3251 3850 3.056107 CCTCCGTCTGGAAATACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
3252 3851 4.383118 CCTCCGTCTGGAAATACTTGTCAT 60.383 45.833 0.00 0.00 45.87 3.06
3253 3852 4.755411 TCCGTCTGGAAATACTTGTCATC 58.245 43.478 0.00 0.00 42.85 2.92
3254 3853 4.221924 TCCGTCTGGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 42.85 3.07
3255 3854 4.935205 CCGTCTGGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 37.49 2.57
3256 3855 5.411361 CCGTCTGGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
3257 3856 6.072728 CCGTCTGGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
3258 3857 7.362056 CCGTCTGGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 37.49 1.82
3259 3858 8.664798 CGTCTGGAAATACTTGTCATCAAAATA 58.335 33.333 0.00 0.00 32.87 1.40
3260 3859 9.994432 GTCTGGAAATACTTGTCATCAAAATAG 57.006 33.333 0.00 0.00 32.87 1.73
3261 3860 9.958180 TCTGGAAATACTTGTCATCAAAATAGA 57.042 29.630 0.00 0.00 32.87 1.98
3316 3915 9.499479 ACATCTAGATACATCCATTTCAATGAC 57.501 33.333 4.54 0.00 38.70 3.06
3317 3916 9.498176 CATCTAGATACATCCATTTCAATGACA 57.502 33.333 4.54 0.00 38.70 3.58
3319 3918 9.551734 TCTAGATACATCCATTTCAATGACAAG 57.448 33.333 0.81 0.00 38.70 3.16
3320 3919 9.334947 CTAGATACATCCATTTCAATGACAAGT 57.665 33.333 0.81 0.00 38.70 3.16
3322 3921 9.857656 AGATACATCCATTTCAATGACAAGTAT 57.142 29.630 0.81 4.50 38.70 2.12
3326 3925 8.253113 ACATCCATTTCAATGACAAGTATTTCC 58.747 33.333 0.81 0.00 38.70 3.13
3327 3926 6.851609 TCCATTTCAATGACAAGTATTTCCG 58.148 36.000 0.81 0.00 38.70 4.30
3328 3927 6.035843 CCATTTCAATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 38.70 5.14
3329 3928 6.127758 CCATTTCAATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 38.70 5.14
3330 3929 5.873179 TTCAATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 0.00 4.79
3331 3930 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
3332 3931 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3333 3932 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3334 3933 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3335 3934 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3336 3935 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3337 3936 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3338 3937 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3339 3938 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3340 3939 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3739 5934 2.045524 AGGCGATGGAGATGATTCTGT 58.954 47.619 0.00 0.00 30.30 3.41
4679 6932 5.487153 TCTAGTGCTCTATGAACGAAGAC 57.513 43.478 0.00 0.00 0.00 3.01
5193 9323 8.712228 AATCTTAAGACAAGAATTTTGGGACT 57.288 30.769 7.48 0.00 0.00 3.85
5251 9384 7.865385 CCTTGATTGATCAGCTAGTAGTACTTC 59.135 40.741 8.40 0.00 38.19 3.01
5253 9386 8.526667 TGATTGATCAGCTAGTAGTACTTCTT 57.473 34.615 8.40 0.00 32.11 2.52
5254 9387 9.628500 TGATTGATCAGCTAGTAGTACTTCTTA 57.372 33.333 8.40 0.00 32.11 2.10
5256 9389 9.854668 ATTGATCAGCTAGTAGTACTTCTTAGA 57.145 33.333 8.40 1.82 0.00 2.10
5257 9390 9.854668 TTGATCAGCTAGTAGTACTTCTTAGAT 57.145 33.333 8.40 6.42 0.00 1.98
5407 9581 2.091610 TGAGAGGCAGGCTAGTAGTGAT 60.092 50.000 0.00 0.00 0.00 3.06
5411 9585 3.312890 AGGCAGGCTAGTAGTGATGATT 58.687 45.455 0.00 0.00 0.00 2.57
5412 9586 4.483950 AGGCAGGCTAGTAGTGATGATTA 58.516 43.478 0.00 0.00 0.00 1.75
5413 9587 4.901849 AGGCAGGCTAGTAGTGATGATTAA 59.098 41.667 0.00 0.00 0.00 1.40
5416 9592 7.401493 AGGCAGGCTAGTAGTGATGATTAATAT 59.599 37.037 0.00 0.00 0.00 1.28
5642 9854 1.343789 CTGCACATCCGGATCATCTCT 59.656 52.381 15.88 0.00 0.00 3.10
5643 9855 1.342496 TGCACATCCGGATCATCTCTC 59.658 52.381 15.88 0.35 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.043565 CAAAAAGGCTCACTAATATGCCATTT 58.956 34.615 5.64 3.20 44.74 2.32
14 15 9.643693 ATCAAAACAAAAAGGCTCACTAATATG 57.356 29.630 0.00 0.00 0.00 1.78
23 24 7.064490 TCACTCAAAATCAAAACAAAAAGGCTC 59.936 33.333 0.00 0.00 0.00 4.70
71 77 4.081917 ACAAAAGACAAACAACCGGTCAAT 60.082 37.500 8.04 0.00 34.04 2.57
72 78 3.256136 ACAAAAGACAAACAACCGGTCAA 59.744 39.130 8.04 0.00 34.04 3.18
73 79 2.820787 ACAAAAGACAAACAACCGGTCA 59.179 40.909 8.04 0.00 34.04 4.02
75 81 2.094442 CCACAAAAGACAAACAACCGGT 60.094 45.455 0.00 0.00 0.00 5.28
76 82 2.164624 TCCACAAAAGACAAACAACCGG 59.835 45.455 0.00 0.00 0.00 5.28
93 106 8.575649 TTTAATAGATTCAAACCCTTCTCCAC 57.424 34.615 0.00 0.00 0.00 4.02
177 196 1.405121 GGGAGCGACCGTTCAGTAATT 60.405 52.381 8.40 0.00 40.11 1.40
180 199 2.345760 GGGGAGCGACCGTTCAGTA 61.346 63.158 8.40 0.00 40.11 2.74
183 202 2.036098 TAGGGGAGCGACCGTTCA 59.964 61.111 8.40 0.00 40.11 3.18
185 204 3.073101 GGTAGGGGAGCGACCGTT 61.073 66.667 0.41 0.00 40.11 4.44
204 223 4.473520 CATCCACTCCGCCGGCTT 62.474 66.667 26.68 2.42 0.00 4.35
211 230 0.321671 AGTTGTCACCATCCACTCCG 59.678 55.000 0.00 0.00 0.00 4.63
223 242 4.441356 GGACAAAGGCATGAAAAGTTGTCA 60.441 41.667 20.17 0.00 44.15 3.58
242 261 1.408961 CGGAGAAGGAGCTAGAGGACA 60.409 57.143 0.00 0.00 0.00 4.02
243 262 1.134037 TCGGAGAAGGAGCTAGAGGAC 60.134 57.143 0.00 0.00 0.00 3.85
295 314 0.041238 CCTACCCTCACAGTCTCCCA 59.959 60.000 0.00 0.00 0.00 4.37
301 320 3.693810 GGAGACCTACCCTCACAGT 57.306 57.895 0.00 0.00 32.48 3.55
323 342 6.176183 CACTCCAAATCCAACTAGACAGATT 58.824 40.000 0.00 0.00 0.00 2.40
367 390 1.595929 GAAACAGTTCGCCGTCCCA 60.596 57.895 0.00 0.00 0.00 4.37
417 440 0.033504 GGCCGAGAAGTCAACTGTCA 59.966 55.000 0.00 0.00 0.00 3.58
421 444 1.248785 TAGCGGCCGAGAAGTCAACT 61.249 55.000 33.48 15.56 0.00 3.16
465 488 9.117183 CAATTTCTGGATCTCTGAAACATGATA 57.883 33.333 0.00 0.00 43.01 2.15
480 503 4.701651 TGAAGTTCGATGCAATTTCTGGAT 59.298 37.500 0.00 0.00 39.11 3.41
487 510 3.120546 CGTGAGTGAAGTTCGATGCAATT 60.121 43.478 0.00 0.00 0.00 2.32
490 513 1.000717 TCGTGAGTGAAGTTCGATGCA 60.001 47.619 0.00 0.00 0.00 3.96
493 516 1.402984 GCCTCGTGAGTGAAGTTCGAT 60.403 52.381 0.00 0.00 0.00 3.59
528 551 2.076622 ATCGACGATGCCTTCCTCCG 62.077 60.000 10.09 0.00 0.00 4.63
537 561 1.153249 TTGGGGGAATCGACGATGC 60.153 57.895 11.83 9.52 0.00 3.91
647 689 3.416119 GGCAAATTTAGCCGAGTTACC 57.584 47.619 13.49 0.00 43.15 2.85
698 741 6.073440 CCTTTGAGTAAAACAAGCGCTTACTA 60.073 38.462 24.55 8.82 36.30 1.82
705 748 5.398416 GCTTAACCTTTGAGTAAAACAAGCG 59.602 40.000 0.00 0.00 0.00 4.68
709 752 8.453238 TGTATGCTTAACCTTTGAGTAAAACA 57.547 30.769 0.00 0.00 0.00 2.83
736 779 2.322830 GGCGACAGGAAAACGACCC 61.323 63.158 0.00 0.00 0.00 4.46
740 783 4.424430 CGCGGCGACAGGAAAACG 62.424 66.667 19.16 0.00 0.00 3.60
752 796 0.384974 TTGACGAAAAATGTCGCGGC 60.385 50.000 2.29 2.29 45.00 6.53
754 798 0.967803 GCTTGACGAAAAATGTCGCG 59.032 50.000 0.00 0.00 45.00 5.87
757 801 3.229552 GCTGAGCTTGACGAAAAATGTC 58.770 45.455 0.00 0.00 36.88 3.06
808 852 5.519206 GCTGGAGTTAGTAATGGTACTTTCG 59.481 44.000 0.00 0.00 41.06 3.46
809 853 5.816258 GGCTGGAGTTAGTAATGGTACTTTC 59.184 44.000 0.00 0.00 41.06 2.62
810 854 5.338953 GGGCTGGAGTTAGTAATGGTACTTT 60.339 44.000 0.00 0.00 41.06 2.66
811 855 4.163649 GGGCTGGAGTTAGTAATGGTACTT 59.836 45.833 0.00 0.00 41.06 2.24
812 856 3.710165 GGGCTGGAGTTAGTAATGGTACT 59.290 47.826 0.00 0.00 43.27 2.73
813 857 3.453353 TGGGCTGGAGTTAGTAATGGTAC 59.547 47.826 0.00 0.00 0.00 3.34
814 858 3.726790 TGGGCTGGAGTTAGTAATGGTA 58.273 45.455 0.00 0.00 0.00 3.25
815 859 2.557869 TGGGCTGGAGTTAGTAATGGT 58.442 47.619 0.00 0.00 0.00 3.55
816 860 3.480470 CATGGGCTGGAGTTAGTAATGG 58.520 50.000 0.00 0.00 0.00 3.16
829 873 1.027357 GCTATTCACACCATGGGCTG 58.973 55.000 18.09 8.88 0.00 4.85
830 874 0.625316 TGCTATTCACACCATGGGCT 59.375 50.000 18.09 0.00 0.00 5.19
831 875 1.473258 TTGCTATTCACACCATGGGC 58.527 50.000 18.09 7.57 0.00 5.36
832 876 4.160065 TGATTTTGCTATTCACACCATGGG 59.840 41.667 18.09 7.72 0.00 4.00
833 877 5.327616 TGATTTTGCTATTCACACCATGG 57.672 39.130 11.19 11.19 0.00 3.66
834 878 4.802039 GCTGATTTTGCTATTCACACCATG 59.198 41.667 0.00 0.00 0.00 3.66
835 879 4.463539 TGCTGATTTTGCTATTCACACCAT 59.536 37.500 0.00 0.00 0.00 3.55
836 880 3.825585 TGCTGATTTTGCTATTCACACCA 59.174 39.130 0.00 0.00 0.00 4.17
837 881 4.418392 CTGCTGATTTTGCTATTCACACC 58.582 43.478 0.00 0.00 0.00 4.16
838 882 3.855950 GCTGCTGATTTTGCTATTCACAC 59.144 43.478 0.00 0.00 0.00 3.82
839 883 3.760151 AGCTGCTGATTTTGCTATTCACA 59.240 39.130 0.00 0.00 33.64 3.58
840 884 4.349501 GAGCTGCTGATTTTGCTATTCAC 58.650 43.478 7.01 0.00 35.76 3.18
841 885 3.379372 GGAGCTGCTGATTTTGCTATTCA 59.621 43.478 7.01 0.00 35.76 2.57
842 886 3.243334 GGGAGCTGCTGATTTTGCTATTC 60.243 47.826 7.01 0.00 35.76 1.75
843 887 2.692041 GGGAGCTGCTGATTTTGCTATT 59.308 45.455 7.01 0.00 35.76 1.73
844 888 2.305009 GGGAGCTGCTGATTTTGCTAT 58.695 47.619 7.01 0.00 35.76 2.97
845 889 1.004628 TGGGAGCTGCTGATTTTGCTA 59.995 47.619 7.01 0.00 35.76 3.49
2133 2324 2.242043 CTTCCCAGTTGTTTCAGCCAT 58.758 47.619 0.00 0.00 0.00 4.40
2377 2575 8.031864 TGAAAAGAACAATGAACTAACTGCAAA 58.968 29.630 0.00 0.00 0.00 3.68
2567 2803 3.195610 TGTTGTCAGGTCATACTGGCTAG 59.804 47.826 0.00 0.00 43.34 3.42
3226 3825 2.389715 AGTATTTCCAGACGGAGGGAG 58.610 52.381 0.00 0.00 44.10 4.30
3227 3826 2.500098 CAAGTATTTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
3228 3827 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
3229 3828 3.056107 TGACAAGTATTTCCAGACGGAGG 60.056 47.826 0.00 0.00 44.10 4.30
3230 3829 4.188247 TGACAAGTATTTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63
3231 3830 4.221924 TGATGACAAGTATTTCCAGACGGA 59.778 41.667 0.00 0.00 40.60 4.69
3232 3831 4.503910 TGATGACAAGTATTTCCAGACGG 58.496 43.478 0.00 0.00 0.00 4.79
3233 3832 6.480524 TTTGATGACAAGTATTTCCAGACG 57.519 37.500 0.00 0.00 37.32 4.18
3234 3833 9.994432 CTATTTTGATGACAAGTATTTCCAGAC 57.006 33.333 0.00 0.00 37.32 3.51
3235 3834 9.958180 TCTATTTTGATGACAAGTATTTCCAGA 57.042 29.630 0.00 0.00 37.32 3.86
3290 3889 9.499479 GTCATTGAAATGGATGTATCTAGATGT 57.501 33.333 15.79 1.25 37.03 3.06
3291 3890 9.498176 TGTCATTGAAATGGATGTATCTAGATG 57.502 33.333 15.79 0.00 37.03 2.90
3293 3892 9.551734 CTTGTCATTGAAATGGATGTATCTAGA 57.448 33.333 0.00 0.00 37.03 2.43
3294 3893 9.334947 ACTTGTCATTGAAATGGATGTATCTAG 57.665 33.333 3.31 0.00 37.03 2.43
3296 3895 9.857656 ATACTTGTCATTGAAATGGATGTATCT 57.142 29.630 3.31 0.00 37.03 1.98
3300 3899 8.253113 GGAAATACTTGTCATTGAAATGGATGT 58.747 33.333 3.31 2.77 37.03 3.06
3301 3900 7.433131 CGGAAATACTTGTCATTGAAATGGATG 59.567 37.037 3.31 0.00 37.03 3.51
3302 3901 7.416664 CCGGAAATACTTGTCATTGAAATGGAT 60.417 37.037 0.00 0.00 37.03 3.41
3303 3902 6.127758 CCGGAAATACTTGTCATTGAAATGGA 60.128 38.462 0.00 0.00 37.03 3.41
3304 3903 6.035843 CCGGAAATACTTGTCATTGAAATGG 58.964 40.000 0.00 0.00 37.03 3.16
3305 3904 6.747280 GTCCGGAAATACTTGTCATTGAAATG 59.253 38.462 5.23 0.00 37.75 2.32
3306 3905 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
3307 3906 5.106869 CGTCCGGAAATACTTGTCATTGAAA 60.107 40.000 5.23 0.00 0.00 2.69
3308 3907 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
3309 3908 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
3310 3909 3.063452 CCGTCCGGAAATACTTGTCATTG 59.937 47.826 5.23 0.00 37.50 2.82
3311 3910 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
3312 3911 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3313 3912 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3314 3913 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3315 3914 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3316 3915 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3317 3916 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3318 3917 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3319 3918 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3320 3919 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3321 3920 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3322 3921 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
3323 3922 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3324 3923 1.856539 AACTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
3325 3924 1.379576 AACTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
3326 3925 0.679002 TCAACTACTCCCTCCGTCCG 60.679 60.000 0.00 0.00 0.00 4.79
3327 3926 1.777941 ATCAACTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
3328 3927 2.293955 GCTATCAACTACTCCCTCCGTC 59.706 54.545 0.00 0.00 0.00 4.79
3329 3928 2.308690 GCTATCAACTACTCCCTCCGT 58.691 52.381 0.00 0.00 0.00 4.69
3330 3929 2.034812 GTGCTATCAACTACTCCCTCCG 59.965 54.545 0.00 0.00 0.00 4.63
3331 3930 3.301274 AGTGCTATCAACTACTCCCTCC 58.699 50.000 0.00 0.00 0.00 4.30
3332 3931 5.009210 CAGTAGTGCTATCAACTACTCCCTC 59.991 48.000 12.17 0.00 43.14 4.30
3333 3932 4.890581 CAGTAGTGCTATCAACTACTCCCT 59.109 45.833 12.17 0.00 43.14 4.20
3334 3933 4.038162 CCAGTAGTGCTATCAACTACTCCC 59.962 50.000 12.17 0.00 43.14 4.30
3335 3934 4.645588 ACCAGTAGTGCTATCAACTACTCC 59.354 45.833 12.17 0.00 43.14 3.85
3336 3935 5.838531 ACCAGTAGTGCTATCAACTACTC 57.161 43.478 12.17 0.00 43.14 2.59
3337 3936 5.624738 GCAACCAGTAGTGCTATCAACTACT 60.625 44.000 9.82 9.82 45.08 2.57
3338 3937 4.567159 GCAACCAGTAGTGCTATCAACTAC 59.433 45.833 5.75 5.75 37.27 2.73
3339 3938 4.221924 TGCAACCAGTAGTGCTATCAACTA 59.778 41.667 0.00 0.00 0.00 2.24
3340 3939 3.007940 TGCAACCAGTAGTGCTATCAACT 59.992 43.478 0.00 0.00 0.00 3.16
3739 5934 4.141298 ACATTTTCCAGGCCAAATCCAAAA 60.141 37.500 5.01 1.49 0.00 2.44
4679 6932 9.417284 GATGTTATTATTCCTTACAAAACGTCG 57.583 33.333 0.00 0.00 0.00 5.12
4947 8496 4.276926 GTCTCTGCCAACAATCTCAAAGTT 59.723 41.667 0.00 0.00 0.00 2.66
5269 9402 6.882610 TGATCACTGACTTGCAAAAACTAT 57.117 33.333 0.00 0.00 0.00 2.12
5429 9605 9.783256 ATAACTAATTGTTTAACTTCCATTCGC 57.217 29.630 0.00 0.00 39.89 4.70
5492 9668 6.092092 TGCAACAATGTAATGTGTAATCTGC 58.908 36.000 0.00 0.00 32.76 4.26
5642 9854 2.381752 TGTCCAGACTTCTCACCTGA 57.618 50.000 0.00 0.00 0.00 3.86
5643 9855 2.289320 CCTTGTCCAGACTTCTCACCTG 60.289 54.545 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.