AutoCloner

Multiple sequence alignment - TraesCS4B01G020600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G020600	chr4B	100.000	2822	0	0	1	2822	14641114	14638293	0.000000e+00	5212
1	TraesCS4B01G020600	chr4B	88.378	826	66	16	1	811	37730427	37729617	0.000000e+00	966
2	TraesCS4B01G020600	chr4B	92.549	510	26	8	2319	2822	123912744	123912241	0.000000e+00	721
3	TraesCS4B01G020600	chr4B	90.909	55	5	0	808	862	14622936	14622990	1.080000e-09	75
4	TraesCS4B01G020600	chr4D	94.448	1513	75	8	808	2318	433386820	433385315	0.000000e+00	2320
5	TraesCS4B01G020600	chr4D	94.280	1521	73	12	808	2318	477884250	477882734	0.000000e+00	2314
6	TraesCS4B01G020600	chr4D	87.120	823	72	18	1	809	472212583	472211781	0.000000e+00	902
7	TraesCS4B01G020600	chr4D	92.673	505	27	7	2319	2822	50012008	50012503	0.000000e+00	719
8	TraesCS4B01G020600	chr4D	92.110	507	32	6	2317	2822	396645715	396645216	0.000000e+00	708
9	TraesCS4B01G020600	chr5D	93.894	1523	76	14	808	2318	375442934	375444451	0.000000e+00	2281
10	TraesCS4B01G020600	chr5D	92.223	1453	94	11	877	2323	449913718	449915157	0.000000e+00	2039
11	TraesCS4B01G020600	chr5D	86.972	829	70	22	1	811	428698714	428699522	0.000000e+00	898
12	TraesCS4B01G020600	chr5D	86.836	828	61	21	1	811	13915517	13914721	0.000000e+00	881
13	TraesCS4B01G020600	chr5D	92.644	503	33	4	2319	2820	415358080	415357581	0.000000e+00	721
14	TraesCS4B01G020600	chr5D	92.292	506	33	5	2318	2820	81666692	81666190	0.000000e+00	713
15	TraesCS4B01G020600	chr4A	93.593	1514	85	11	808	2318	608866152	608864648	0.000000e+00	2248
16	TraesCS4B01G020600	chr4A	92.999	1514	82	14	808	2318	573670296	573671788	0.000000e+00	2187
17	TraesCS4B01G020600	chr3A	93.399	1515	87	12	808	2318	714630350	714631855	0.000000e+00	2231
18	TraesCS4B01G020600	chr5A	91.464	1441	102	14	877	2307	396679480	396678051	0.000000e+00	1960
19	TraesCS4B01G020600	chr5A	83.628	226	26	8	592	811	104207915	104208135	4.770000e-48	202
20	TraesCS4B01G020600	chr3D	90.323	1457	112	17	877	2318	149758952	149760394	0.000000e+00	1882
21	TraesCS4B01G020600	chr3D	86.503	815	65	22	1	808	566060885	566060109	0.000000e+00	854
22	TraesCS4B01G020600	chr3D	92.607	514	27	7	2316	2822	140692480	140691971	0.000000e+00	728
23	TraesCS4B01G020600	chr3D	92.368	511	28	7	2319	2820	412646710	412646202	0.000000e+00	717
24	TraesCS4B01G020600	chr2B	88.115	833	67	18	1	820	748059723	748058910	0.000000e+00	961
25	TraesCS4B01G020600	chr2B	83.249	591	65	16	238	812	28072369	28072941	1.940000e-141	512
26	TraesCS4B01G020600	chr2B	85.776	232	20	6	584	814	665671324	665671105	1.690000e-57	233
27	TraesCS4B01G020600	chr3B	88.136	826	67	12	1	809	22177930	22177119	0.000000e+00	953
28	TraesCS4B01G020600	chr5B	91.523	637	38	8	137	759	470011249	470011883	0.000000e+00	863
29	TraesCS4B01G020600	chr5B	92.870	575	36	4	238	811	712867345	712866775	0.000000e+00	830
30	TraesCS4B01G020600	chr5B	88.075	587	44	11	238	811	461599333	461598760	0.000000e+00	673
31	TraesCS4B01G020600	chr7D	86.353	828	67	23	1	812	472734269	472735066	0.000000e+00	861
32	TraesCS4B01G020600	chr6B	91.453	585	38	6	238	811	703470978	703471561	0.000000e+00	793
33	TraesCS4B01G020600	chr6B	92.996	514	23	6	2319	2822	481678184	481678694	0.000000e+00	737
34	TraesCS4B01G020600	chr6B	87.288	590	44	14	238	811	685003740	685003166	0.000000e+00	645
35	TraesCS4B01G020600	chr7B	93.333	510	26	6	2316	2820	677566890	677566384	0.000000e+00	747
36	TraesCS4B01G020600	chr2D	87.500	664	48	18	164	811	19210968	19211612	0.000000e+00	734
37	TraesCS4B01G020600	chr1D	86.735	588	42	17	238	809	184383610	184383043	3.090000e-174	621
38	TraesCS4B01G020600	chrUn	90.667	225	16	4	590	811	79230063	79229841	7.640000e-76	294
39	TraesCS4B01G020600	chrUn	83.691	233	22	12	579	809	29494847	29495065	3.680000e-49	206
40	TraesCS4B01G020600	chr7A	75.822	517	77	32	331	811	133588542	133588038	4.730000e-53	219

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G020600	chr4B	14638293	14641114	2821	True	5212	5212	100.000	1	2822	1	chr4B.!!$R1	2821
1	TraesCS4B01G020600	chr4B	37729617	37730427	810	True	966	966	88.378	1	811	1	chr4B.!!$R2	810
2	TraesCS4B01G020600	chr4B	123912241	123912744	503	True	721	721	92.549	2319	2822	1	chr4B.!!$R3	503
3	TraesCS4B01G020600	chr4D	433385315	433386820	1505	True	2320	2320	94.448	808	2318	1	chr4D.!!$R2	1510
4	TraesCS4B01G020600	chr4D	477882734	477884250	1516	True	2314	2314	94.280	808	2318	1	chr4D.!!$R4	1510
5	TraesCS4B01G020600	chr4D	472211781	472212583	802	True	902	902	87.120	1	809	1	chr4D.!!$R3	808
6	TraesCS4B01G020600	chr5D	375442934	375444451	1517	False	2281	2281	93.894	808	2318	1	chr5D.!!$F1	1510
7	TraesCS4B01G020600	chr5D	449913718	449915157	1439	False	2039	2039	92.223	877	2323	1	chr5D.!!$F3	1446
8	TraesCS4B01G020600	chr5D	428698714	428699522	808	False	898	898	86.972	1	811	1	chr5D.!!$F2	810
9	TraesCS4B01G020600	chr5D	13914721	13915517	796	True	881	881	86.836	1	811	1	chr5D.!!$R1	810
10	TraesCS4B01G020600	chr5D	81666190	81666692	502	True	713	713	92.292	2318	2820	1	chr5D.!!$R2	502
11	TraesCS4B01G020600	chr4A	608864648	608866152	1504	True	2248	2248	93.593	808	2318	1	chr4A.!!$R1	1510
12	TraesCS4B01G020600	chr4A	573670296	573671788	1492	False	2187	2187	92.999	808	2318	1	chr4A.!!$F1	1510
13	TraesCS4B01G020600	chr3A	714630350	714631855	1505	False	2231	2231	93.399	808	2318	1	chr3A.!!$F1	1510
14	TraesCS4B01G020600	chr5A	396678051	396679480	1429	True	1960	1960	91.464	877	2307	1	chr5A.!!$R1	1430
15	TraesCS4B01G020600	chr3D	149758952	149760394	1442	False	1882	1882	90.323	877	2318	1	chr3D.!!$F1	1441
16	TraesCS4B01G020600	chr3D	566060109	566060885	776	True	854	854	86.503	1	808	1	chr3D.!!$R3	807
17	TraesCS4B01G020600	chr3D	140691971	140692480	509	True	728	728	92.607	2316	2822	1	chr3D.!!$R1	506
18	TraesCS4B01G020600	chr3D	412646202	412646710	508	True	717	717	92.368	2319	2820	1	chr3D.!!$R2	501
19	TraesCS4B01G020600	chr2B	748058910	748059723	813	True	961	961	88.115	1	820	1	chr2B.!!$R2	819
20	TraesCS4B01G020600	chr2B	28072369	28072941	572	False	512	512	83.249	238	812	1	chr2B.!!$F1	574
21	TraesCS4B01G020600	chr3B	22177119	22177930	811	True	953	953	88.136	1	809	1	chr3B.!!$R1	808
22	TraesCS4B01G020600	chr5B	470011249	470011883	634	False	863	863	91.523	137	759	1	chr5B.!!$F1	622
23	TraesCS4B01G020600	chr5B	712866775	712867345	570	True	830	830	92.870	238	811	1	chr5B.!!$R2	573
24	TraesCS4B01G020600	chr5B	461598760	461599333	573	True	673	673	88.075	238	811	1	chr5B.!!$R1	573
25	TraesCS4B01G020600	chr7D	472734269	472735066	797	False	861	861	86.353	1	812	1	chr7D.!!$F1	811
26	TraesCS4B01G020600	chr6B	703470978	703471561	583	False	793	793	91.453	238	811	1	chr6B.!!$F2	573
27	TraesCS4B01G020600	chr6B	481678184	481678694	510	False	737	737	92.996	2319	2822	1	chr6B.!!$F1	503
28	TraesCS4B01G020600	chr6B	685003166	685003740	574	True	645	645	87.288	238	811	1	chr6B.!!$R1	573
29	TraesCS4B01G020600	chr7B	677566384	677566890	506	True	747	747	93.333	2316	2820	1	chr7B.!!$R1	504
30	TraesCS4B01G020600	chr2D	19210968	19211612	644	False	734	734	87.500	164	811	1	chr2D.!!$F1	647
31	TraesCS4B01G020600	chr1D	184383043	184383610	567	True	621	621	86.735	238	809	1	chr1D.!!$R1	571
32	TraesCS4B01G020600	chr7A	133588038	133588542	504	True	219	219	75.822	331	811	1	chr7A.!!$R1	480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
820	947	0.100682	GATGCTCTAACGACGCTCCA	59.899	55.0	0.0	0.0	0.0	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2149	2302	1.285962	CCCATGACCAACCTTCAGGAT	59.714	52.381	0.0	0.0	38.94	3.24	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
112	113	2.126071	GCACTCCGACGCTGCTTA	60.126	61.111	0.00	0.00	0.00	3.09
124	125	1.375908	CTGCTTAGCGTCAAGGCCA	60.376	57.895	5.01	0.00	0.00	5.36
302	315	2.127345	CGAGCTCGACAACGACGT	60.127	61.111	32.06	0.00	43.81	4.34
406	419	2.261671	GAGGCTGCGACGAAGGAA	59.738	61.111	4.68	0.00	0.00	3.36
538	605	3.020026	GACGACGGCGACTTCTCGA	62.020	63.158	22.49	0.00	43.06	4.04
551	618	2.288518	ACTTCTCGACCTTCAGCAAGTC	60.289	50.000	0.00	0.00	0.00	3.01
667	775	6.511767	CGTGTTTTAGCCCTTGAATGCTATAG	60.512	42.308	0.00	0.00	39.64	1.31
775	902	0.678684	CCCGGACGGCAATTTTAGGT	60.679	55.000	0.73	0.00	0.00	3.08
813	940	0.747255	GGCTGGAGATGCTCTAACGA	59.253	55.000	0.00	0.00	0.00	3.85
820	947	0.100682	GATGCTCTAACGACGCTCCA	59.899	55.000	0.00	0.00	0.00	3.86
853	980	3.506096	CCGCTCGCTCCGTCAGTA	61.506	66.667	0.00	0.00	0.00	2.74
897	1033	1.139058	CGGACCAAGTATAAGCTGGCT	59.861	52.381	0.00	0.00	0.00	4.75
931	1070	1.197430	CCACCTGCTCCCTCACTCTT	61.197	60.000	0.00	0.00	0.00	2.85
938	1077	0.614979	CTCCCTCACTCTTCCCCGAA	60.615	60.000	0.00	0.00	0.00	4.30
949	1088	3.771160	CCCCGAACTCACTCCCCG	61.771	72.222	0.00	0.00	0.00	5.73
954	1093	1.030488	CGAACTCACTCCCCGCTCTA	61.030	60.000	0.00	0.00	0.00	2.43
973	1121	4.929479	TCTACTCTCCTCTGCTTCTTCTT	58.071	43.478	0.00	0.00	0.00	2.52
1031	1179	1.823610	GCCCAGTAGTAACGAGACCTT	59.176	52.381	0.00	0.00	0.00	3.50
1033	1181	3.087031	CCCAGTAGTAACGAGACCTTGA	58.913	50.000	0.00	0.00	0.00	3.02
1095	1243	6.128391	TGCAAATGGAGTATTTCGTAAGTCAC	60.128	38.462	0.00	0.00	36.87	3.67
1119	1269	5.538433	CCTAACTTATCCTCTCCTCTCCTTG	59.462	48.000	0.00	0.00	0.00	3.61
1156	1306	4.948004	GGTTAGGGTTAGGGTTTGAAGATG	59.052	45.833	0.00	0.00	0.00	2.90
1161	1311	5.016831	GGGTTAGGGTTTGAAGATGATTGT	58.983	41.667	0.00	0.00	0.00	2.71
1171	1321	8.084073	GGTTTGAAGATGATTGTGATTTCTTCA	58.916	33.333	9.03	9.03	46.28	3.02
1242	1392	1.001293	CTGCAGCTAACTCCTGACACA	59.999	52.381	0.00	0.00	32.03	3.72
1362	1512	2.306805	TGACACTGGCAGGAGATTCATT	59.693	45.455	20.34	0.00	0.00	2.57
1385	1535	2.691409	TGTGCTACTGAGGTAATGGC	57.309	50.000	0.00	0.00	0.00	4.40
1388	1538	1.132500	GCTACTGAGGTAATGGCCCT	58.868	55.000	0.00	0.00	34.11	5.19
1410	1560	6.180472	CCTAGTTGGTGTGGATTTGATTAGT	58.820	40.000	0.00	0.00	0.00	2.24
1438	1588	7.446931	TGATTTTCTGCTATGTAGTGGAAACAA	59.553	33.333	8.13	0.31	46.06	2.83
1444	1594	6.765403	TGCTATGTAGTGGAAACAAAGTAGT	58.235	36.000	0.00	0.00	46.06	2.73
1517	1668	8.979574	GTATGTCTGAATATTGTACTTGTAGCC	58.020	37.037	0.00	0.00	0.00	3.93
1518	1669	7.182817	TGTCTGAATATTGTACTTGTAGCCT	57.817	36.000	0.00	0.00	0.00	4.58
1524	1675	4.674281	ATTGTACTTGTAGCCTAGAGCC	57.326	45.455	0.00	0.00	45.47	4.70
1525	1676	3.383698	TGTACTTGTAGCCTAGAGCCT	57.616	47.619	0.00	0.00	45.47	4.58
1566	1717	9.419297	TGTGTTGTATTTTTAGTACAGAGCTAG	57.581	33.333	0.00	0.00	33.92	3.42
1567	1718	8.381387	GTGTTGTATTTTTAGTACAGAGCTAGC	58.619	37.037	6.62	6.62	33.92	3.42
1568	1719	8.311836	TGTTGTATTTTTAGTACAGAGCTAGCT	58.688	33.333	19.45	19.45	33.92	3.32
1569	1720	9.798994	GTTGTATTTTTAGTACAGAGCTAGCTA	57.201	33.333	19.38	0.00	33.92	3.32
1586	1737	2.363680	AGCTAGCTAGTGCACCTATGTG	59.636	50.000	17.69	1.56	45.65	3.21
1855	2007	3.581101	TCTCTGGCCAATCAGTATAGCT	58.419	45.455	7.01	0.00	36.25	3.32
1936	2088	1.214589	GATTGCACAAGCCAGGCAG	59.785	57.895	15.80	8.41	41.13	4.85
1938	2090	1.812686	ATTGCACAAGCCAGGCAGTG	61.813	55.000	25.27	25.27	41.13	3.66
1941	2093	1.737355	GCACAAGCCAGGCAGTGAAA	61.737	55.000	30.81	0.00	38.46	2.69
1975	2127	4.102367	AGAAGAAGAAGCAACTTGAGGAGT	59.898	41.667	0.34	0.00	41.47	3.85
1993	2145	3.376546	GGAGTAGGCAAAGATTGAGCTTG	59.623	47.826	0.00	0.00	0.00	4.01
2130	2283	8.091449	CACCTTAAAGAAGAGAAGAAGAAGCTA	58.909	37.037	0.00	0.00	34.25	3.32
2137	2290	9.474313	AAGAAGAGAAGAAGAAGCTAGAGAATA	57.526	33.333	0.00	0.00	0.00	1.75
2149	2302	6.914654	AGCTAGAGAATATCATTGCTGAGA	57.085	37.500	0.00	0.00	34.12	3.27
2386	2543	6.407202	GTGGAAGTGATAAGTATGGAGTGTT	58.593	40.000	0.00	0.00	0.00	3.32
2502	2659	9.515020	CAACTAGAAACAAGAAATAAAACTGCA	57.485	29.630	0.00	0.00	0.00	4.41
2716	2897	6.423182	AGGCATAAGCTAACATACTTTTCCA	58.577	36.000	0.00	0.00	41.70	3.53
2718	2899	7.229506	AGGCATAAGCTAACATACTTTTCCATC	59.770	37.037	0.00	0.00	41.70	3.51
2724	2905	5.067805	GCTAACATACTTTTCCATCCTTGGG	59.932	44.000	0.00	0.00	43.81	4.12
2762	2944	1.908619	TGGAACTCTAGCAAGCATCCA	59.091	47.619	0.00	3.65	34.77	3.41
2763	2945	2.507058	TGGAACTCTAGCAAGCATCCAT	59.493	45.455	0.00	0.00	33.17	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
170	171	0.807667	GCCTTCGCTGATGACGATGT	60.808	55.000	0.00	0.00	39.65	3.06
394	407	1.209383	CGACTCTTCCTTCGTCGCA	59.791	57.895	0.00	0.00	43.02	5.10
538	605	8.465273	AACTAATAAAAAGACTTGCTGAAGGT	57.535	30.769	0.00	0.00	32.95	3.50
584	672	4.134563	ACTTGGGCTTTATATTCGCGAAT	58.865	39.130	34.16	34.16	34.93	3.34
587	675	3.963383	AACTTGGGCTTTATATTCGCG	57.037	42.857	0.00	0.00	0.00	5.87
758	885	0.179174	GCACCTAAAATTGCCGTCCG	60.179	55.000	0.00	0.00	32.21	4.79
820	947	2.797278	CGGCTCTAACGGCTGGGAT	61.797	63.158	0.00	0.00	32.91	3.85
846	973	2.125512	GGCCAGGTGCTACTGACG	60.126	66.667	0.00	0.00	40.97	4.35
850	977	3.391382	GGTCGGCCAGGTGCTACT	61.391	66.667	0.00	0.00	40.92	2.57
931	1070	2.284405	GGGGAGTGAGTTCGGGGA	60.284	66.667	0.00	0.00	0.00	4.81
938	1077	0.394625	GAGTAGAGCGGGGAGTGAGT	60.395	60.000	0.00	0.00	0.00	3.41
949	1088	2.654863	AGAAGCAGAGGAGAGTAGAGC	58.345	52.381	0.00	0.00	0.00	4.09
954	1093	2.028203	GCAAGAAGAAGCAGAGGAGAGT	60.028	50.000	0.00	0.00	0.00	3.24
992	1140	3.319198	AGGACGGCATGGTCGGTT	61.319	61.111	0.00	0.00	37.82	4.44
1016	1164	4.154717	GTCGTTCAAGGTCTCGTTACTAC	58.845	47.826	0.00	0.00	0.00	2.73
1031	1179	0.179197	GAGCTCGTCATCGTCGTTCA	60.179	55.000	0.00	0.00	38.33	3.18
1033	1181	0.452184	ATGAGCTCGTCATCGTCGTT	59.548	50.000	9.64	0.00	42.80	3.85
1060	1208	1.409064	CTCCATTTGCATGCTGCTGAT	59.591	47.619	20.33	2.82	45.31	2.90
1095	1243	5.333566	AGGAGAGGAGAGGATAAGTTAGG	57.666	47.826	0.00	0.00	0.00	2.69
1119	1269	2.354805	CCCTAACCCTAGAACACACAGC	60.355	54.545	0.00	0.00	0.00	4.40
1229	1379	4.705507	GGTCTATCACTGTGTCAGGAGTTA	59.294	45.833	7.79	0.00	35.51	2.24
1242	1392	3.055530	CACAGAAGCTTGGGTCTATCACT	60.056	47.826	2.10	0.00	0.00	3.41
1362	1512	3.134623	CCATTACCTCAGTAGCACATCCA	59.865	47.826	0.00	0.00	0.00	3.41
1385	1535	3.433306	TCAAATCCACACCAACTAGGG	57.567	47.619	0.00	0.00	43.89	3.53
1388	1538	7.721842	TCAAACTAATCAAATCCACACCAACTA	59.278	33.333	0.00	0.00	0.00	2.24
1410	1560	7.994425	TTCCACTACATAGCAGAAAATCAAA	57.006	32.000	0.00	0.00	0.00	2.69
1517	1668	6.769822	ACATCAATATGTTTCCAAGGCTCTAG	59.230	38.462	0.00	0.00	44.07	2.43
1518	1669	6.543465	CACATCAATATGTTTCCAAGGCTCTA	59.457	38.462	0.00	0.00	44.07	2.43
1524	1675	9.859427	AATACAACACATCAATATGTTTCCAAG	57.141	29.630	0.00	0.00	44.07	3.61
1566	1717	2.748605	CACATAGGTGCACTAGCTAGC	58.251	52.381	20.91	6.62	42.22	3.42
1586	1737	9.787532	AATAACAAATCATAACACATGTGCTAC	57.212	29.630	25.68	0.00	0.00	3.58
1732	1884	4.696479	ACATATCCCAGAGCTTGGTTAG	57.304	45.455	12.18	0.76	46.25	2.34
1785	1937	1.918262	TCTGTCCCATGAGCCTCATTT	59.082	47.619	3.97	0.00	34.28	2.32
1819	1971	3.133721	GCCAGAGAATCAAGCTCCTTCTA	59.866	47.826	5.62	0.00	37.82	2.10
1855	2007	1.486310	GGACACATCATCCACCAGCTA	59.514	52.381	0.00	0.00	36.15	3.32
1936	2088	6.284459	TCTTCTTCTCCTTCAGTTCTTTCAC	58.716	40.000	0.00	0.00	0.00	3.18
1938	2090	6.073276	GCTTCTTCTTCTCCTTCAGTTCTTTC	60.073	42.308	0.00	0.00	0.00	2.62
1941	2093	4.346418	TGCTTCTTCTTCTCCTTCAGTTCT	59.654	41.667	0.00	0.00	0.00	3.01
1975	2127	5.105635	CCATTTCAAGCTCAATCTTTGCCTA	60.106	40.000	0.00	0.00	0.00	3.93
2130	2283	6.497606	TCAGGATCTCAGCAATGATATTCTCT	59.502	38.462	0.00	0.00	0.00	3.10
2137	2290	3.458857	ACCTTCAGGATCTCAGCAATGAT	59.541	43.478	0.00	0.00	38.94	2.45
2149	2302	1.285962	CCCATGACCAACCTTCAGGAT	59.714	52.381	0.00	0.00	38.94	3.24
2263	2420	2.551459	CAGATAACATAGCAAGGCCAGC	59.449	50.000	5.01	9.16	0.00	4.85
2386	2543	2.224769	CCTTTAGCTCCTTGTGGGTTCA	60.225	50.000	0.00	0.00	36.25	3.18
2502	2659	9.408648	CAAAGTTATCCTCTTTATACCCACAAT	57.591	33.333	0.00	0.00	34.35	2.71
2536	2693	8.148999	ACCTACTTTTATATTTTAGCTCTCCGG	58.851	37.037	0.00	0.00	0.00	5.14
2716	2897	3.959495	AAGTGCATATGACCCAAGGAT	57.041	42.857	6.97	0.00	0.00	3.24
2718	2899	4.717877	TCATAAGTGCATATGACCCAAGG	58.282	43.478	6.97	0.00	37.37	3.61
2724	2905	7.443575	AGAGTTCCAATCATAAGTGCATATGAC	59.556	37.037	11.32	2.11	43.17	3.06
2786	2971	5.937540	GCTTTAATGCTATGGTTGGGTTTTT	59.062	36.000	6.10	0.00	0.00	1.94

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.