Multiple sequence alignment - TraesCS4B01G020500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G020500 chr4B 100.000 4867 0 0 1 4867 14534733 14529867 0.000000e+00 8988.0
1 TraesCS4B01G020500 chr4B 99.538 2380 10 1 847 3225 15421388 15419009 0.000000e+00 4333.0
2 TraesCS4B01G020500 chr4B 99.209 1644 13 0 3224 4867 15418895 15417252 0.000000e+00 2964.0
3 TraesCS4B01G020500 chr4B 89.524 315 32 1 1 315 578036081 578036394 9.820000e-107 398.0
4 TraesCS4B01G020500 chr4B 98.851 87 1 0 4262 4348 14530430 14530344 6.520000e-34 156.0
5 TraesCS4B01G020500 chr4B 98.851 87 1 0 4304 4390 14530472 14530386 6.520000e-34 156.0
6 TraesCS4B01G020500 chr4B 98.851 87 1 0 4262 4348 15417815 15417729 6.520000e-34 156.0
7 TraesCS4B01G020500 chr4B 98.851 87 1 0 4304 4390 15417857 15417771 6.520000e-34 156.0
8 TraesCS4B01G020500 chr4B 93.976 83 5 0 855 937 14565409 14565327 5.110000e-25 126.0
9 TraesCS4B01G020500 chr4B 97.778 45 1 0 4262 4306 14530388 14530344 1.450000e-10 78.7
10 TraesCS4B01G020500 chr4B 97.778 45 1 0 4346 4390 14530472 14530428 1.450000e-10 78.7
11 TraesCS4B01G020500 chr4B 97.778 45 1 0 4262 4306 15417773 15417729 1.450000e-10 78.7
12 TraesCS4B01G020500 chr4B 97.778 45 1 0 4346 4390 15417857 15417813 1.450000e-10 78.7
13 TraesCS4B01G020500 chr5D 91.060 2114 141 14 939 3011 532279008 532276902 0.000000e+00 2813.0
14 TraesCS4B01G020500 chr5D 95.593 1316 38 9 3005 4306 532276869 532275560 0.000000e+00 2091.0
15 TraesCS4B01G020500 chr5D 94.626 521 19 1 4347 4867 532275603 532275092 0.000000e+00 798.0
16 TraesCS4B01G020500 chr5D 97.727 44 1 0 4305 4348 532275603 532275560 5.220000e-10 76.8
17 TraesCS4B01G020500 chr5D 93.333 45 3 0 2041 2085 534606657 534606701 3.140000e-07 67.6
18 TraesCS4B01G020500 chr4A 90.076 2116 157 15 939 3011 639993428 639995533 0.000000e+00 2695.0
19 TraesCS4B01G020500 chr4A 96.279 1317 33 8 3005 4306 639995566 639996881 0.000000e+00 2146.0
20 TraesCS4B01G020500 chr4A 96.161 521 20 0 4347 4867 639996838 639997358 0.000000e+00 852.0
21 TraesCS4B01G020500 chr4A 89.389 622 50 10 168 776 143725853 143726471 0.000000e+00 769.0
22 TraesCS4B01G020500 chr4A 89.351 601 51 6 936 1527 639954695 639955291 0.000000e+00 743.0
23 TraesCS4B01G020500 chr4A 91.841 478 26 5 933 1404 639961987 639962457 0.000000e+00 654.0
24 TraesCS4B01G020500 chr4A 74.945 1365 249 58 1014 2321 637247505 637246177 1.540000e-149 540.0
25 TraesCS4B01G020500 chr4A 74.732 1211 198 79 1010 2148 640001126 639999952 4.470000e-120 442.0
26 TraesCS4B01G020500 chr4A 75.788 888 158 42 1007 1862 640002539 640003401 3.530000e-106 396.0
27 TraesCS4B01G020500 chr4A 79.928 279 37 10 4045 4306 637204503 637204227 2.310000e-43 187.0
28 TraesCS4B01G020500 chr4A 100.000 44 0 0 4305 4348 639996838 639996881 1.120000e-11 82.4
29 TraesCS4B01G020500 chr5B 89.541 2113 150 22 936 3011 671714382 671712304 0.000000e+00 2612.0
30 TraesCS4B01G020500 chr5B 95.824 1317 40 7 3005 4306 671712271 671710955 0.000000e+00 2113.0
31 TraesCS4B01G020500 chr5B 86.131 1096 112 26 3230 4306 671494367 671495441 0.000000e+00 1146.0
32 TraesCS4B01G020500 chr5B 87.468 790 85 5 1632 2407 671487667 671488456 0.000000e+00 898.0
33 TraesCS4B01G020500 chr5B 95.777 521 22 0 4347 4867 671710998 671710478 0.000000e+00 841.0
34 TraesCS4B01G020500 chr5B 89.449 635 53 7 960 1587 671487038 671487665 0.000000e+00 789.0
35 TraesCS4B01G020500 chr5B 88.161 473 40 7 4409 4867 671495436 671495906 2.560000e-152 549.0
36 TraesCS4B01G020500 chr5B 83.564 578 58 16 2461 3011 671493732 671494299 1.560000e-139 507.0
37 TraesCS4B01G020500 chr5B 77.849 781 143 19 1539 2301 671503268 671504036 1.600000e-124 457.0
38 TraesCS4B01G020500 chr5B 83.603 494 66 5 3451 3936 671505956 671506442 2.670000e-122 449.0
39 TraesCS4B01G020500 chr5B 80.547 622 76 24 2427 3011 671504109 671504722 2.080000e-118 436.0
40 TraesCS4B01G020500 chr5B 74.117 1132 218 49 999 2085 671357138 671356037 9.820000e-107 398.0
41 TraesCS4B01G020500 chr5B 81.746 126 18 3 1770 1891 671360060 671360184 3.100000e-17 100.0
42 TraesCS4B01G020500 chr5B 100.000 44 0 0 4305 4348 671710998 671710955 1.120000e-11 82.4
43 TraesCS4B01G020500 chr6B 96.516 775 16 6 1 769 151673042 151672273 0.000000e+00 1271.0
44 TraesCS4B01G020500 chr6B 95.367 777 27 4 1 771 688083640 688082867 0.000000e+00 1227.0
45 TraesCS4B01G020500 chr4D 91.980 611 36 8 168 770 91176281 91175676 0.000000e+00 845.0
46 TraesCS4B01G020500 chr4D 93.609 266 17 0 1 266 91176404 91176139 9.820000e-107 398.0
47 TraesCS4B01G020500 chr2A 91.368 614 41 8 168 773 448565245 448565854 0.000000e+00 830.0
48 TraesCS4B01G020500 chr7A 89.780 636 50 9 144 769 132622974 132623604 0.000000e+00 800.0
49 TraesCS4B01G020500 chr3B 89.699 631 49 11 147 769 744030892 744030270 0.000000e+00 791.0
50 TraesCS4B01G020500 chr5A 89.902 614 48 8 168 769 343962175 343962786 0.000000e+00 778.0
51 TraesCS4B01G020500 chr3A 88.456 641 60 10 138 770 521575426 521576060 0.000000e+00 761.0
52 TraesCS4B01G020500 chrUn 100.000 392 0 0 2834 3225 479679390 479678999 0.000000e+00 725.0
53 TraesCS4B01G020500 chr2D 90.725 345 31 1 2196 2539 605563119 605562775 4.440000e-125 459.0
54 TraesCS4B01G020500 chr2D 91.860 86 6 1 852 936 2661757 2661842 8.560000e-23 119.0
55 TraesCS4B01G020500 chr2D 90.909 66 6 0 1832 1897 647274495 647274430 6.710000e-14 89.8
56 TraesCS4B01G020500 chr7B 87.821 312 34 3 1 310 702688269 702687960 3.580000e-96 363.0
57 TraesCS4B01G020500 chr1A 89.394 66 7 0 1832 1897 16301131 16301066 3.120000e-12 84.2
58 TraesCS4B01G020500 chr1A 89.394 66 7 0 1832 1897 16379002 16378937 3.120000e-12 84.2
59 TraesCS4B01G020500 chr7D 97.222 36 1 0 787 822 395850309 395850274 1.460000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G020500 chr4B 14529867 14534733 4866 True 8988.000000 8988 100.000000 1 4867 1 chr4B.!!$R1 4866
1 TraesCS4B01G020500 chr4B 15417252 15421388 4136 True 1294.400000 4333 98.667500 847 4867 6 chr4B.!!$R4 4020
2 TraesCS4B01G020500 chr5D 532275092 532279008 3916 True 1444.700000 2813 94.751500 939 4867 4 chr5D.!!$R1 3928
3 TraesCS4B01G020500 chr4A 639993428 639997358 3930 False 1443.850000 2695 95.629000 939 4867 4 chr4A.!!$F5 3928
4 TraesCS4B01G020500 chr4A 143725853 143726471 618 False 769.000000 769 89.389000 168 776 1 chr4A.!!$F1 608
5 TraesCS4B01G020500 chr4A 639954695 639955291 596 False 743.000000 743 89.351000 936 1527 1 chr4A.!!$F2 591
6 TraesCS4B01G020500 chr4A 637246177 637247505 1328 True 540.000000 540 74.945000 1014 2321 1 chr4A.!!$R2 1307
7 TraesCS4B01G020500 chr4A 639999952 640001126 1174 True 442.000000 442 74.732000 1010 2148 1 chr4A.!!$R3 1138
8 TraesCS4B01G020500 chr4A 640002539 640003401 862 False 396.000000 396 75.788000 1007 1862 1 chr4A.!!$F4 855
9 TraesCS4B01G020500 chr5B 671710478 671714382 3904 True 1412.100000 2612 95.285500 936 4867 4 chr5B.!!$R2 3931
10 TraesCS4B01G020500 chr5B 671487038 671488456 1418 False 843.500000 898 88.458500 960 2407 2 chr5B.!!$F2 1447
11 TraesCS4B01G020500 chr5B 671493732 671495906 2174 False 734.000000 1146 85.952000 2461 4867 3 chr5B.!!$F3 2406
12 TraesCS4B01G020500 chr5B 671503268 671506442 3174 False 447.333333 457 80.666333 1539 3936 3 chr5B.!!$F4 2397
13 TraesCS4B01G020500 chr5B 671356037 671357138 1101 True 398.000000 398 74.117000 999 2085 1 chr5B.!!$R1 1086
14 TraesCS4B01G020500 chr6B 151672273 151673042 769 True 1271.000000 1271 96.516000 1 769 1 chr6B.!!$R1 768
15 TraesCS4B01G020500 chr6B 688082867 688083640 773 True 1227.000000 1227 95.367000 1 771 1 chr6B.!!$R2 770
16 TraesCS4B01G020500 chr4D 91175676 91176404 728 True 621.500000 845 92.794500 1 770 2 chr4D.!!$R1 769
17 TraesCS4B01G020500 chr2A 448565245 448565854 609 False 830.000000 830 91.368000 168 773 1 chr2A.!!$F1 605
18 TraesCS4B01G020500 chr7A 132622974 132623604 630 False 800.000000 800 89.780000 144 769 1 chr7A.!!$F1 625
19 TraesCS4B01G020500 chr3B 744030270 744030892 622 True 791.000000 791 89.699000 147 769 1 chr3B.!!$R1 622
20 TraesCS4B01G020500 chr5A 343962175 343962786 611 False 778.000000 778 89.902000 168 769 1 chr5A.!!$F1 601
21 TraesCS4B01G020500 chr3A 521575426 521576060 634 False 761.000000 761 88.456000 138 770 1 chr3A.!!$F1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 898 0.104120 CACGAGTTGAGGGTGACACA 59.896 55.000 8.08 0.00 33.58 3.72 F
840 900 0.104120 CGAGTTGAGGGTGACACACA 59.896 55.000 11.16 3.05 35.86 3.72 F
842 902 0.179045 AGTTGAGGGTGACACACAGC 60.179 55.000 11.16 7.82 45.06 4.40 F
843 903 1.227527 TTGAGGGTGACACACAGCG 60.228 57.895 11.16 0.00 46.51 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2157 4.040217 AGCTCAACCATGAAGAGGCTATAG 59.960 45.833 0.00 0.00 33.16 1.31 R
2832 3085 6.380995 GCATTAATTTACCGATGCATCATCA 58.619 36.000 25.70 7.22 43.23 3.07 R
3743 4938 8.530311 CATGGTAACTGAGATAGCTGAGATTAT 58.470 37.037 0.13 0.00 37.61 1.28 R
4129 5332 6.000840 AGGAAGAATTGAACTCAAAGACCTC 58.999 40.000 0.00 0.00 39.55 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.674281 TCATTGCAATCAAAACGATGTGC 59.326 39.130 9.53 0.00 38.02 4.57
166 167 7.230849 ACAATGAACATTTCTCAAATAGCCA 57.769 32.000 0.00 0.00 0.00 4.75
168 169 8.316214 ACAATGAACATTTCTCAAATAGCCATT 58.684 29.630 0.00 0.00 0.00 3.16
169 170 8.600625 CAATGAACATTTCTCAAATAGCCATTG 58.399 33.333 0.00 0.00 0.00 2.82
171 172 7.894708 TGAACATTTCTCAAATAGCCATTGAA 58.105 30.769 0.00 0.00 36.43 2.69
529 577 4.632538 ACCAAAAACCAGAAGAGAAACG 57.367 40.909 0.00 0.00 0.00 3.60
543 591 4.470602 AGAGAAACGGGAGAAAACCAAAT 58.529 39.130 0.00 0.00 0.00 2.32
583 632 6.771267 ACAAAACTAGAAGAAGAAAACCGGAT 59.229 34.615 9.46 0.00 0.00 4.18
771 831 2.093394 TCGTCAAATAGGAATTGCCCGA 60.093 45.455 0.00 0.00 37.37 5.14
772 832 2.287915 CGTCAAATAGGAATTGCCCGAG 59.712 50.000 0.00 0.00 37.37 4.63
787 847 3.133437 CGAGAGGGGATAGGCTTGA 57.867 57.895 0.00 0.00 0.00 3.02
788 848 0.676736 CGAGAGGGGATAGGCTTGAC 59.323 60.000 0.00 0.00 0.00 3.18
789 849 1.794714 GAGAGGGGATAGGCTTGACA 58.205 55.000 0.00 0.00 0.00 3.58
790 850 2.119495 GAGAGGGGATAGGCTTGACAA 58.881 52.381 0.00 0.00 0.00 3.18
791 851 2.103941 GAGAGGGGATAGGCTTGACAAG 59.896 54.545 11.02 11.02 0.00 3.16
804 864 3.848726 CTTGACAAGCCACTTTGTTTGT 58.151 40.909 1.43 0.00 41.15 2.83
805 865 4.992688 CTTGACAAGCCACTTTGTTTGTA 58.007 39.130 1.43 0.00 41.15 2.41
806 866 5.590530 TTGACAAGCCACTTTGTTTGTAT 57.409 34.783 0.00 0.00 41.15 2.29
807 867 5.181690 TGACAAGCCACTTTGTTTGTATC 57.818 39.130 0.00 0.00 41.15 2.24
808 868 4.219033 GACAAGCCACTTTGTTTGTATCG 58.781 43.478 0.00 0.00 41.15 2.92
809 869 3.880490 ACAAGCCACTTTGTTTGTATCGA 59.120 39.130 0.00 0.00 38.05 3.59
810 870 4.518970 ACAAGCCACTTTGTTTGTATCGAT 59.481 37.500 2.16 2.16 38.05 3.59
811 871 4.685169 AGCCACTTTGTTTGTATCGATG 57.315 40.909 8.54 0.00 0.00 3.84
812 872 3.119849 AGCCACTTTGTTTGTATCGATGC 60.120 43.478 8.54 7.48 0.00 3.91
813 873 3.416277 CCACTTTGTTTGTATCGATGCG 58.584 45.455 8.54 0.00 0.00 4.73
814 874 2.840176 CACTTTGTTTGTATCGATGCGC 59.160 45.455 8.54 0.00 0.00 6.09
815 875 2.482336 ACTTTGTTTGTATCGATGCGCA 59.518 40.909 14.96 14.96 0.00 6.09
816 876 3.058570 ACTTTGTTTGTATCGATGCGCAA 60.059 39.130 17.11 10.50 0.00 4.85
817 877 2.519002 TGTTTGTATCGATGCGCAAC 57.481 45.000 17.11 11.95 0.00 4.17
818 878 1.129624 TGTTTGTATCGATGCGCAACC 59.870 47.619 17.11 8.85 0.00 3.77
819 879 0.730265 TTTGTATCGATGCGCAACCC 59.270 50.000 17.11 5.90 0.00 4.11
820 880 0.391793 TTGTATCGATGCGCAACCCA 60.392 50.000 17.11 0.00 0.00 4.51
821 881 1.087202 TGTATCGATGCGCAACCCAC 61.087 55.000 17.11 9.87 0.00 4.61
822 882 1.880796 TATCGATGCGCAACCCACG 60.881 57.895 17.11 15.33 0.00 4.94
823 883 2.286127 TATCGATGCGCAACCCACGA 62.286 55.000 17.11 19.96 0.00 4.35
824 884 3.853330 CGATGCGCAACCCACGAG 61.853 66.667 17.11 0.00 0.00 4.18
825 885 2.742372 GATGCGCAACCCACGAGT 60.742 61.111 17.11 0.00 0.00 4.18
826 886 2.281484 ATGCGCAACCCACGAGTT 60.281 55.556 17.11 0.00 0.00 3.01
834 894 3.466881 CCCACGAGTTGAGGGTGA 58.533 61.111 4.71 0.00 43.10 4.02
835 895 1.004918 CCCACGAGTTGAGGGTGAC 60.005 63.158 4.71 0.00 43.10 3.67
836 896 1.745890 CCACGAGTTGAGGGTGACA 59.254 57.895 0.00 0.00 33.58 3.58
837 897 0.600255 CCACGAGTTGAGGGTGACAC 60.600 60.000 0.00 0.00 33.58 3.67
838 898 0.104120 CACGAGTTGAGGGTGACACA 59.896 55.000 8.08 0.00 33.58 3.72
839 899 0.104304 ACGAGTTGAGGGTGACACAC 59.896 55.000 8.08 3.19 0.00 3.82
840 900 0.104120 CGAGTTGAGGGTGACACACA 59.896 55.000 11.16 3.05 35.86 3.72
841 901 1.869754 CGAGTTGAGGGTGACACACAG 60.870 57.143 11.16 0.00 35.86 3.66
842 902 0.179045 AGTTGAGGGTGACACACAGC 60.179 55.000 11.16 7.82 45.06 4.40
843 903 1.227527 TTGAGGGTGACACACAGCG 60.228 57.895 11.16 0.00 46.51 5.18
844 904 2.357517 GAGGGTGACACACAGCGG 60.358 66.667 11.16 0.00 46.51 5.52
845 905 3.883744 GAGGGTGACACACAGCGGG 62.884 68.421 11.16 0.00 46.51 6.13
2241 2417 3.633525 GGTGCATGGCTATCAATGAGAAA 59.366 43.478 0.00 0.00 0.00 2.52
2371 2548 7.404671 AACATATGGATAGTTTGTGGGAAAC 57.595 36.000 7.80 0.00 0.00 2.78
3743 4938 4.224594 AGCTGAAATCTCCATGACAAGAGA 59.775 41.667 10.12 10.12 43.03 3.10
4129 5332 8.338259 GGTAGATAGTGCTGTTTTGTTATGATG 58.662 37.037 0.00 0.00 0.00 3.07
4612 5839 8.571336 CATCTCTCTTAATTGTTTTGGTTCAGT 58.429 33.333 0.00 0.00 0.00 3.41
4613 5840 7.930217 TCTCTCTTAATTGTTTTGGTTCAGTG 58.070 34.615 0.00 0.00 0.00 3.66
4683 5910 5.730296 ATATTATGAAGAGGGTGGTCTCG 57.270 43.478 0.00 0.00 38.71 4.04
4705 5932 2.355132 CAGGCAAGTCATGAGCAGAATC 59.645 50.000 0.00 0.00 0.00 2.52
4862 6089 2.929641 TGTTGGCAGAGACATGAAACA 58.070 42.857 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
478 526 6.649141 GTCTTGTTTTCCTCTTTTGGTTTTGT 59.351 34.615 0.00 0.00 0.00 2.83
529 577 6.216569 GTTTCTTCTGATTTGGTTTTCTCCC 58.783 40.000 0.00 0.00 0.00 4.30
543 591 8.706492 TCTAGTTTTGTTTACGTTTCTTCTGA 57.294 30.769 0.00 0.00 0.00 3.27
606 657 6.015027 TCTTTCACGTTTGGTTTTTCTCAA 57.985 33.333 0.00 0.00 0.00 3.02
771 831 2.122768 CTTGTCAAGCCTATCCCCTCT 58.877 52.381 0.00 0.00 0.00 3.69
772 832 2.629336 CTTGTCAAGCCTATCCCCTC 57.371 55.000 0.00 0.00 0.00 4.30
783 843 3.848726 ACAAACAAAGTGGCTTGTCAAG 58.151 40.909 8.31 8.31 38.59 3.02
784 844 3.951775 ACAAACAAAGTGGCTTGTCAA 57.048 38.095 0.00 0.00 38.59 3.18
785 845 4.260990 CGATACAAACAAAGTGGCTTGTCA 60.261 41.667 2.42 0.00 38.59 3.58
786 846 4.024387 TCGATACAAACAAAGTGGCTTGTC 60.024 41.667 2.42 0.00 38.59 3.18
787 847 3.880490 TCGATACAAACAAAGTGGCTTGT 59.120 39.130 0.00 0.00 41.31 3.16
788 848 4.481930 TCGATACAAACAAAGTGGCTTG 57.518 40.909 0.00 0.00 0.00 4.01
789 849 4.615912 GCATCGATACAAACAAAGTGGCTT 60.616 41.667 0.00 0.00 0.00 4.35
790 850 3.119849 GCATCGATACAAACAAAGTGGCT 60.120 43.478 0.00 0.00 0.00 4.75
791 851 3.171277 GCATCGATACAAACAAAGTGGC 58.829 45.455 0.00 0.00 0.00 5.01
792 852 3.416277 CGCATCGATACAAACAAAGTGG 58.584 45.455 0.00 0.00 0.00 4.00
793 853 2.840176 GCGCATCGATACAAACAAAGTG 59.160 45.455 0.30 0.00 0.00 3.16
794 854 2.482336 TGCGCATCGATACAAACAAAGT 59.518 40.909 5.66 0.00 0.00 2.66
795 855 3.116063 TGCGCATCGATACAAACAAAG 57.884 42.857 5.66 0.00 0.00 2.77
796 856 3.230355 GTTGCGCATCGATACAAACAAA 58.770 40.909 12.75 0.00 0.00 2.83
797 857 2.413502 GGTTGCGCATCGATACAAACAA 60.414 45.455 12.75 5.30 30.07 2.83
798 858 1.129624 GGTTGCGCATCGATACAAACA 59.870 47.619 12.75 0.00 30.07 2.83
799 859 1.531058 GGGTTGCGCATCGATACAAAC 60.531 52.381 12.75 12.31 0.00 2.93
800 860 0.730265 GGGTTGCGCATCGATACAAA 59.270 50.000 12.75 0.00 0.00 2.83
801 861 0.391793 TGGGTTGCGCATCGATACAA 60.392 50.000 12.75 0.24 0.00 2.41
802 862 1.087202 GTGGGTTGCGCATCGATACA 61.087 55.000 12.75 5.32 0.00 2.29
803 863 1.641677 GTGGGTTGCGCATCGATAC 59.358 57.895 12.75 5.61 0.00 2.24
804 864 1.880796 CGTGGGTTGCGCATCGATA 60.881 57.895 12.75 0.00 0.00 2.92
805 865 3.195002 CGTGGGTTGCGCATCGAT 61.195 61.111 12.75 0.00 0.00 3.59
806 866 4.365505 TCGTGGGTTGCGCATCGA 62.366 61.111 12.75 13.86 31.94 3.59
807 867 3.853330 CTCGTGGGTTGCGCATCG 61.853 66.667 12.75 11.69 0.00 3.84
808 868 2.325082 AACTCGTGGGTTGCGCATC 61.325 57.895 12.75 11.18 0.00 3.91
809 869 2.281484 AACTCGTGGGTTGCGCAT 60.281 55.556 12.75 0.00 0.00 4.73
810 870 3.276091 CAACTCGTGGGTTGCGCA 61.276 61.111 5.66 5.66 39.76 6.09
811 871 2.954753 CTCAACTCGTGGGTTGCGC 61.955 63.158 7.74 0.00 44.19 6.09
812 872 2.317609 CCTCAACTCGTGGGTTGCG 61.318 63.158 7.74 1.65 44.19 4.85
813 873 1.966451 CCCTCAACTCGTGGGTTGC 60.966 63.158 7.74 0.00 44.19 4.17
814 874 4.379174 CCCTCAACTCGTGGGTTG 57.621 61.111 6.26 6.26 42.63 3.77
818 878 0.600255 GTGTCACCCTCAACTCGTGG 60.600 60.000 0.00 0.00 0.00 4.94
819 879 0.104120 TGTGTCACCCTCAACTCGTG 59.896 55.000 0.00 0.00 0.00 4.35
820 880 0.104304 GTGTGTCACCCTCAACTCGT 59.896 55.000 0.00 0.00 0.00 4.18
821 881 0.104120 TGTGTGTCACCCTCAACTCG 59.896 55.000 0.00 0.00 32.73 4.18
822 882 1.871080 CTGTGTGTCACCCTCAACTC 58.129 55.000 0.00 0.00 32.73 3.01
823 883 0.179045 GCTGTGTGTCACCCTCAACT 60.179 55.000 0.00 0.00 32.73 3.16
824 884 1.498865 CGCTGTGTGTCACCCTCAAC 61.499 60.000 0.00 0.00 32.73 3.18
825 885 1.227527 CGCTGTGTGTCACCCTCAA 60.228 57.895 0.00 0.00 32.73 3.02
826 886 2.421314 CGCTGTGTGTCACCCTCA 59.579 61.111 0.00 0.00 32.73 3.86
827 887 2.357517 CCGCTGTGTGTCACCCTC 60.358 66.667 0.00 0.00 32.73 4.30
828 888 3.941188 CCCGCTGTGTGTCACCCT 61.941 66.667 0.00 0.00 32.73 4.34
829 889 3.883744 CTCCCGCTGTGTGTCACCC 62.884 68.421 0.00 0.00 32.73 4.61
830 890 2.357517 CTCCCGCTGTGTGTCACC 60.358 66.667 0.00 0.00 32.73 4.02
831 891 3.044305 GCTCCCGCTGTGTGTCAC 61.044 66.667 0.00 0.00 34.56 3.67
832 892 2.601194 TTTGCTCCCGCTGTGTGTCA 62.601 55.000 0.00 0.00 36.97 3.58
833 893 1.444119 TTTTGCTCCCGCTGTGTGTC 61.444 55.000 0.00 0.00 36.97 3.67
834 894 0.823356 ATTTTGCTCCCGCTGTGTGT 60.823 50.000 0.00 0.00 36.97 3.72
835 895 0.109597 GATTTTGCTCCCGCTGTGTG 60.110 55.000 0.00 0.00 36.97 3.82
836 896 0.537143 TGATTTTGCTCCCGCTGTGT 60.537 50.000 0.00 0.00 36.97 3.72
837 897 0.169672 CTGATTTTGCTCCCGCTGTG 59.830 55.000 0.00 0.00 36.97 3.66
838 898 1.589716 GCTGATTTTGCTCCCGCTGT 61.590 55.000 0.00 0.00 36.97 4.40
839 899 1.138247 GCTGATTTTGCTCCCGCTG 59.862 57.895 0.00 0.00 36.97 5.18
840 900 1.303561 TGCTGATTTTGCTCCCGCT 60.304 52.632 0.00 0.00 36.97 5.52
841 901 1.138247 CTGCTGATTTTGCTCCCGC 59.862 57.895 0.00 0.00 0.00 6.13
842 902 1.138247 GCTGCTGATTTTGCTCCCG 59.862 57.895 0.00 0.00 0.00 5.14
843 903 0.455005 GAGCTGCTGATTTTGCTCCC 59.545 55.000 7.01 0.00 44.16 4.30
1983 2157 4.040217 AGCTCAACCATGAAGAGGCTATAG 59.960 45.833 0.00 0.00 33.16 1.31
2832 3085 6.380995 GCATTAATTTACCGATGCATCATCA 58.619 36.000 25.70 7.22 43.23 3.07
3743 4938 8.530311 CATGGTAACTGAGATAGCTGAGATTAT 58.470 37.037 0.13 0.00 37.61 1.28
4129 5332 6.000840 AGGAAGAATTGAACTCAAAGACCTC 58.999 40.000 0.00 0.00 39.55 3.85
4234 5449 6.580041 CGACATGCATAATGAAATAGCCTTTC 59.420 38.462 0.00 3.07 38.72 2.62
4612 5839 2.642427 TGCTTGCTTCAGTTCTTCACA 58.358 42.857 0.00 0.00 0.00 3.58
4613 5840 3.698029 TTGCTTGCTTCAGTTCTTCAC 57.302 42.857 0.00 0.00 0.00 3.18
4683 5910 0.675837 TCTGCTCATGACTTGCCTGC 60.676 55.000 3.24 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.