Multiple sequence alignment - TraesCS4B01G019600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G019600 chr4B 100.000 3236 0 0 1 3236 14053651 14056886 0.000000e+00 5976.0
1 TraesCS4B01G019600 chr4B 97.738 442 9 1 2796 3236 14077464 14077905 0.000000e+00 760.0
2 TraesCS4B01G019600 chr4B 96.833 442 13 1 2796 3236 292807806 292808247 0.000000e+00 737.0
3 TraesCS4B01G019600 chr4D 89.482 1797 113 37 1006 2790 7874061 7872329 0.000000e+00 2202.0
4 TraesCS4B01G019600 chr4D 83.478 345 12 14 556 900 7874488 7874189 2.460000e-71 279.0
5 TraesCS4B01G019600 chr4D 82.051 351 40 15 76 422 7874986 7874655 8.840000e-71 278.0
6 TraesCS4B01G019600 chr4A 86.334 2144 145 73 558 2653 595442479 595444522 0.000000e+00 2200.0
7 TraesCS4B01G019600 chr4A 80.778 463 56 16 54 496 595441921 595442370 6.690000e-87 331.0
8 TraesCS4B01G019600 chr4A 86.765 68 5 3 2686 2750 595444783 595444849 4.480000e-09 73.1
9 TraesCS4B01G019600 chr3B 86.527 1618 145 35 1201 2796 731095665 731094099 0.000000e+00 1712.0
10 TraesCS4B01G019600 chr3B 96.629 445 14 1 2793 3236 586355985 586356429 0.000000e+00 737.0
11 TraesCS4B01G019600 chr3B 77.157 591 67 35 533 1111 731096226 731095692 6.840000e-72 281.0
12 TraesCS4B01G019600 chr3D 86.004 1579 134 31 1198 2738 551346125 551344596 0.000000e+00 1611.0
13 TraesCS4B01G019600 chr3D 88.734 861 60 16 1190 2050 551430490 551431313 0.000000e+00 1018.0
14 TraesCS4B01G019600 chr3D 87.500 744 69 13 2063 2790 551432586 551433321 0.000000e+00 837.0
15 TraesCS4B01G019600 chr3D 78.826 562 55 42 575 1111 551346692 551346170 1.450000e-83 320.0
16 TraesCS4B01G019600 chr3D 81.526 249 25 14 868 1102 551430203 551430444 5.510000e-43 185.0
17 TraesCS4B01G019600 chr3D 84.810 158 10 9 592 740 551429983 551430135 2.600000e-31 147.0
18 TraesCS4B01G019600 chr3A 86.582 1185 103 22 1193 2365 688591847 688590707 0.000000e+00 1256.0
19 TraesCS4B01G019600 chr3A 88.047 343 32 3 2461 2794 688590610 688590268 6.510000e-107 398.0
20 TraesCS4B01G019600 chr3A 83.929 224 22 12 899 1111 688592113 688591893 5.470000e-48 202.0
21 TraesCS4B01G019600 chr3A 75.676 407 73 23 2226 2619 688589741 688589348 2.570000e-41 180.0
22 TraesCS4B01G019600 chr3A 74.457 368 59 20 323 684 688592568 688592230 3.390000e-25 126.0
23 TraesCS4B01G019600 chr7B 97.279 441 12 0 2796 3236 40078392 40077952 0.000000e+00 749.0
24 TraesCS4B01G019600 chr7B 97.052 441 13 0 2796 3236 57750646 57751086 0.000000e+00 743.0
25 TraesCS4B01G019600 chr7B 78.656 1101 152 50 1015 2074 595007459 595008517 0.000000e+00 654.0
26 TraesCS4B01G019600 chr7B 83.237 173 18 7 2552 2716 595309671 595309840 7.230000e-32 148.0
27 TraesCS4B01G019600 chr7B 91.139 79 6 1 2554 2632 595173838 595173915 4.420000e-19 106.0
28 TraesCS4B01G019600 chr7B 77.949 195 20 7 592 781 595007119 595007295 2.050000e-17 100.0
29 TraesCS4B01G019600 chr6B 97.279 441 12 0 2796 3236 112555643 112556083 0.000000e+00 749.0
30 TraesCS4B01G019600 chr6B 97.460 433 11 0 2798 3230 112569968 112570400 0.000000e+00 739.0
31 TraesCS4B01G019600 chr2B 97.052 441 13 0 2796 3236 420867021 420866581 0.000000e+00 743.0
32 TraesCS4B01G019600 chr1B 97.059 442 12 1 2796 3236 22004572 22004131 0.000000e+00 743.0
33 TraesCS4B01G019600 chr7D 87.053 587 64 9 1497 2074 550553531 550554114 0.000000e+00 652.0
34 TraesCS4B01G019600 chr7D 86.860 586 64 9 1497 2074 550800927 550801507 0.000000e+00 643.0
35 TraesCS4B01G019600 chr7D 86.232 138 13 3 2130 2266 550554414 550554546 9.360000e-31 145.0
36 TraesCS4B01G019600 chr7D 77.692 260 29 16 2124 2366 550801663 550801910 7.280000e-27 132.0
37 TraesCS4B01G019600 chr7D 76.531 196 22 7 592 781 550800177 550800354 5.750000e-13 86.1
38 TraesCS4B01G019600 chr7D 100.000 38 0 0 744 781 550462802 550462839 1.610000e-08 71.3
39 TraesCS4B01G019600 chr7D 100.000 38 0 0 744 781 550552890 550552927 1.610000e-08 71.3
40 TraesCS4B01G019600 chr7A 82.415 762 97 26 1332 2074 635860683 635861426 5.890000e-177 630.0
41 TraesCS4B01G019600 chr7A 84.783 138 13 5 2130 2266 635861684 635861814 7.280000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G019600 chr4B 14053651 14056886 3235 False 5976.000000 5976 100.000000 1 3236 1 chr4B.!!$F1 3235
1 TraesCS4B01G019600 chr4D 7872329 7874986 2657 True 919.666667 2202 85.003667 76 2790 3 chr4D.!!$R1 2714
2 TraesCS4B01G019600 chr4A 595441921 595444849 2928 False 868.033333 2200 84.625667 54 2750 3 chr4A.!!$F1 2696
3 TraesCS4B01G019600 chr3B 731094099 731096226 2127 True 996.500000 1712 81.842000 533 2796 2 chr3B.!!$R1 2263
4 TraesCS4B01G019600 chr3D 551344596 551346692 2096 True 965.500000 1611 82.415000 575 2738 2 chr3D.!!$R1 2163
5 TraesCS4B01G019600 chr3D 551429983 551433321 3338 False 546.750000 1018 85.642500 592 2790 4 chr3D.!!$F1 2198
6 TraesCS4B01G019600 chr3A 688589348 688592568 3220 True 432.400000 1256 81.738200 323 2794 5 chr3A.!!$R1 2471
7 TraesCS4B01G019600 chr7B 595007119 595008517 1398 False 377.000000 654 78.302500 592 2074 2 chr7B.!!$F4 1482
8 TraesCS4B01G019600 chr7D 550552890 550554546 1656 False 289.433333 652 91.095000 744 2266 3 chr7D.!!$F2 1522
9 TraesCS4B01G019600 chr7D 550800177 550801910 1733 False 287.033333 643 80.361000 592 2366 3 chr7D.!!$F3 1774
10 TraesCS4B01G019600 chr7A 635860683 635861814 1131 False 381.000000 630 83.599000 1332 2266 2 chr7A.!!$F1 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
951 1119 0.105778 CTTCCCTTGGCTCCTCGATC 59.894 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2889 5593 0.391793 CTTCCGAGAAGGGCCTGAAC 60.392 60.0 6.92 1.62 41.52 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.532155 ATCCCTCGCGTCTCTGCC 61.532 66.667 5.77 0.00 0.00 4.85
18 19 4.742649 TCCCTCGCGTCTCTGCCT 62.743 66.667 5.77 0.00 0.00 4.75
19 20 4.200283 CCCTCGCGTCTCTGCCTC 62.200 72.222 5.77 0.00 0.00 4.70
20 21 3.137459 CCTCGCGTCTCTGCCTCT 61.137 66.667 5.77 0.00 0.00 3.69
21 22 1.820056 CCTCGCGTCTCTGCCTCTA 60.820 63.158 5.77 0.00 0.00 2.43
22 23 1.353804 CTCGCGTCTCTGCCTCTAC 59.646 63.158 5.77 0.00 0.00 2.59
23 24 2.023461 CGCGTCTCTGCCTCTACG 59.977 66.667 0.00 0.00 38.34 3.51
25 26 3.503749 CGTCTCTGCCTCTACGCT 58.496 61.111 0.00 0.00 0.00 5.07
26 27 1.063327 CGTCTCTGCCTCTACGCTG 59.937 63.158 0.00 0.00 0.00 5.18
27 28 1.649390 CGTCTCTGCCTCTACGCTGT 61.649 60.000 0.00 0.00 0.00 4.40
28 29 1.380524 GTCTCTGCCTCTACGCTGTA 58.619 55.000 0.00 0.00 0.00 2.74
29 30 1.743958 GTCTCTGCCTCTACGCTGTAA 59.256 52.381 0.00 0.00 0.00 2.41
30 31 1.743958 TCTCTGCCTCTACGCTGTAAC 59.256 52.381 0.00 0.00 0.00 2.50
31 32 1.746220 CTCTGCCTCTACGCTGTAACT 59.254 52.381 0.00 0.00 0.00 2.24
32 33 2.164624 CTCTGCCTCTACGCTGTAACTT 59.835 50.000 0.00 0.00 0.00 2.66
33 34 3.349927 TCTGCCTCTACGCTGTAACTTA 58.650 45.455 0.00 0.00 0.00 2.24
34 35 3.128242 TCTGCCTCTACGCTGTAACTTAC 59.872 47.826 0.00 0.00 0.00 2.34
35 36 3.087031 TGCCTCTACGCTGTAACTTACT 58.913 45.455 0.71 0.00 0.00 2.24
36 37 3.128242 TGCCTCTACGCTGTAACTTACTC 59.872 47.826 0.71 0.00 0.00 2.59
37 38 3.488890 GCCTCTACGCTGTAACTTACTCC 60.489 52.174 0.71 0.00 0.00 3.85
38 39 3.066481 CCTCTACGCTGTAACTTACTCCC 59.934 52.174 0.71 0.00 0.00 4.30
39 40 3.946558 CTCTACGCTGTAACTTACTCCCT 59.053 47.826 0.71 0.00 0.00 4.20
40 41 4.338879 TCTACGCTGTAACTTACTCCCTT 58.661 43.478 0.71 0.00 0.00 3.95
41 42 5.500234 TCTACGCTGTAACTTACTCCCTTA 58.500 41.667 0.71 0.00 0.00 2.69
42 43 6.125029 TCTACGCTGTAACTTACTCCCTTAT 58.875 40.000 0.71 0.00 0.00 1.73
43 44 5.672421 ACGCTGTAACTTACTCCCTTATT 57.328 39.130 0.71 0.00 0.00 1.40
44 45 6.780457 ACGCTGTAACTTACTCCCTTATTA 57.220 37.500 0.71 0.00 0.00 0.98
45 46 7.357429 ACGCTGTAACTTACTCCCTTATTAT 57.643 36.000 0.71 0.00 0.00 1.28
46 47 7.789026 ACGCTGTAACTTACTCCCTTATTATT 58.211 34.615 0.71 0.00 0.00 1.40
47 48 8.262933 ACGCTGTAACTTACTCCCTTATTATTT 58.737 33.333 0.71 0.00 0.00 1.40
48 49 9.106070 CGCTGTAACTTACTCCCTTATTATTTT 57.894 33.333 0.71 0.00 0.00 1.82
108 109 4.844420 CTGCCTACAGCTAGCCAC 57.156 61.111 12.13 0.00 44.23 5.01
232 242 1.404391 CATGCATGCAGTTTCCTCCTC 59.596 52.381 26.69 0.00 0.00 3.71
235 245 2.016096 GCATGCAGTTTCCTCCTCCTC 61.016 57.143 14.21 0.00 0.00 3.71
244 254 0.186386 TCCTCCTCCTCCTCCGAATC 59.814 60.000 0.00 0.00 0.00 2.52
258 268 1.442148 GAATCGCCCTCCGCTAACT 59.558 57.895 0.00 0.00 36.73 2.24
259 269 0.597898 GAATCGCCCTCCGCTAACTC 60.598 60.000 0.00 0.00 36.73 3.01
264 274 3.148279 CCTCCGCTAACTCCGGCT 61.148 66.667 0.00 0.00 45.19 5.52
265 275 2.722201 CCTCCGCTAACTCCGGCTT 61.722 63.158 0.00 0.00 45.19 4.35
278 299 1.143277 TCCGGCTTTTTACCAAGTCCA 59.857 47.619 0.00 0.00 0.00 4.02
284 305 3.421844 CTTTTTACCAAGTCCAGAGGGG 58.578 50.000 0.00 0.00 38.37 4.79
285 306 2.426431 TTTACCAAGTCCAGAGGGGA 57.574 50.000 0.00 0.00 45.89 4.81
313 334 9.498176 ACCAGAGTACGTAATTTATTTTGTTCT 57.502 29.630 0.00 0.00 0.00 3.01
314 335 9.968743 CCAGAGTACGTAATTTATTTTGTTCTC 57.031 33.333 0.00 0.00 0.00 2.87
321 342 9.968743 ACGTAATTTATTTTGTTCTCTTCGATC 57.031 29.630 0.00 0.00 0.00 3.69
338 359 2.236395 CGATCTGGGTTTCCTTACACCT 59.764 50.000 0.00 0.00 33.09 4.00
366 387 0.940126 GTGCGGCAGATCGATCAAAT 59.060 50.000 26.47 3.90 0.00 2.32
403 424 3.367051 CTGATTTGGCGCCACGACG 62.367 63.158 32.95 13.19 37.93 5.12
436 472 3.866651 ACGATGATCTGGTCTCCTTTTG 58.133 45.455 0.00 0.00 0.00 2.44
437 473 2.611292 CGATGATCTGGTCTCCTTTTGC 59.389 50.000 0.00 0.00 0.00 3.68
438 474 3.614092 GATGATCTGGTCTCCTTTTGCA 58.386 45.455 0.00 0.00 0.00 4.08
439 475 3.726557 TGATCTGGTCTCCTTTTGCAT 57.273 42.857 0.00 0.00 0.00 3.96
467 503 3.849951 CCCATGGACTCGACCCCG 61.850 72.222 15.22 0.00 37.07 5.73
472 508 1.268899 CATGGACTCGACCCCGTATAC 59.731 57.143 0.00 0.00 37.05 1.47
473 509 0.815213 TGGACTCGACCCCGTATACG 60.815 60.000 18.40 18.40 37.05 3.06
486 524 4.026310 CCCCGTATACGCATATATTTTCGC 60.026 45.833 19.86 0.00 38.18 4.70
504 542 3.977684 CGTATATGCACGCGTCTTG 57.022 52.632 9.86 0.00 34.78 3.02
523 605 6.688385 CGTCTTGTGCATATATTCTTGGTTTG 59.312 38.462 0.00 0.00 0.00 2.93
527 609 7.010697 TGTGCATATATTCTTGGTTTGTACG 57.989 36.000 0.00 0.00 0.00 3.67
550 641 1.215924 GGAGGAGTAGTAGCCAGGAGT 59.784 57.143 0.00 0.00 0.00 3.85
551 642 2.303175 GAGGAGTAGTAGCCAGGAGTG 58.697 57.143 0.00 0.00 0.00 3.51
568 659 5.674933 GGAGTGCTCCGAATTATTAAAGG 57.325 43.478 2.11 0.00 40.36 3.11
569 660 4.515567 GGAGTGCTCCGAATTATTAAAGGG 59.484 45.833 2.11 0.00 40.36 3.95
570 661 4.461198 AGTGCTCCGAATTATTAAAGGGG 58.539 43.478 0.00 0.00 0.00 4.79
571 662 3.568430 GTGCTCCGAATTATTAAAGGGGG 59.432 47.826 0.00 0.00 0.00 5.40
589 686 0.999712 GGGGAGGGAGGTTGATTGAA 59.000 55.000 0.00 0.00 0.00 2.69
590 687 1.064389 GGGGAGGGAGGTTGATTGAAG 60.064 57.143 0.00 0.00 0.00 3.02
621 720 6.923508 GGAAGGCATAAATAAAAGGAAATCGG 59.076 38.462 0.00 0.00 0.00 4.18
642 741 3.433740 GGCCCTGAAAACGAGAAGGATAT 60.434 47.826 0.00 0.00 30.92 1.63
643 742 4.202326 GGCCCTGAAAACGAGAAGGATATA 60.202 45.833 0.00 0.00 30.92 0.86
685 793 1.001406 CGTCAGTTGCTTTCTCCTCCT 59.999 52.381 0.00 0.00 0.00 3.69
686 794 2.694213 GTCAGTTGCTTTCTCCTCCTC 58.306 52.381 0.00 0.00 0.00 3.71
689 797 2.301296 CAGTTGCTTTCTCCTCCTCTCA 59.699 50.000 0.00 0.00 0.00 3.27
699 815 2.033602 TCCTCTCACTCGACGCCA 59.966 61.111 0.00 0.00 0.00 5.69
786 908 4.147449 CTGCCTGCCATCCGACGA 62.147 66.667 0.00 0.00 0.00 4.20
787 909 4.451150 TGCCTGCCATCCGACGAC 62.451 66.667 0.00 0.00 0.00 4.34
809 932 3.003763 GGGACGGACCTCCTTGCT 61.004 66.667 9.14 0.00 38.98 3.91
810 933 2.593956 GGGACGGACCTCCTTGCTT 61.594 63.158 9.14 0.00 38.98 3.91
811 934 1.079057 GGACGGACCTCCTTGCTTC 60.079 63.158 3.44 0.00 35.41 3.86
812 935 1.545706 GGACGGACCTCCTTGCTTCT 61.546 60.000 3.44 0.00 35.41 2.85
813 936 0.321996 GACGGACCTCCTTGCTTCTT 59.678 55.000 0.00 0.00 0.00 2.52
814 937 0.765510 ACGGACCTCCTTGCTTCTTT 59.234 50.000 0.00 0.00 0.00 2.52
815 938 1.270893 ACGGACCTCCTTGCTTCTTTC 60.271 52.381 0.00 0.00 0.00 2.62
816 939 1.002544 CGGACCTCCTTGCTTCTTTCT 59.997 52.381 0.00 0.00 0.00 2.52
867 990 3.052082 CCATCCATCCATCGCCGC 61.052 66.667 0.00 0.00 0.00 6.53
887 1024 1.008424 CGATCCGTCCATGACCTCG 60.008 63.158 0.00 0.00 0.00 4.63
919 1087 1.115467 CCTCCCGCATCTCACTAACT 58.885 55.000 0.00 0.00 0.00 2.24
947 1115 2.273776 GCCTTCCCTTGGCTCCTC 59.726 66.667 0.00 0.00 46.38 3.71
948 1116 2.586792 CCTTCCCTTGGCTCCTCG 59.413 66.667 0.00 0.00 0.00 4.63
949 1117 1.990060 CCTTCCCTTGGCTCCTCGA 60.990 63.158 0.00 0.00 0.00 4.04
950 1118 1.341156 CCTTCCCTTGGCTCCTCGAT 61.341 60.000 0.00 0.00 0.00 3.59
951 1119 0.105778 CTTCCCTTGGCTCCTCGATC 59.894 60.000 0.00 0.00 0.00 3.69
957 1125 4.959596 GGCTCCTCGATCGCCTGC 62.960 72.222 11.09 11.45 40.62 4.85
962 1141 3.250323 CTCGATCGCCTGCGTGTG 61.250 66.667 11.09 2.70 40.74 3.82
1107 1360 3.788145 CCCCCACCGCCGTTATGA 61.788 66.667 0.00 0.00 0.00 2.15
1253 1545 2.801421 GCGGTCGATCTGCTGAGA 59.199 61.111 10.40 0.00 44.39 3.27
1340 1641 4.373116 TCGGTGCTCGGCCAAGTC 62.373 66.667 2.24 0.00 39.77 3.01
1414 1720 1.833630 ACATGTGAGTCCCGTGATCAT 59.166 47.619 0.00 0.00 0.00 2.45
1452 1775 4.142945 CGTTTGATCAGGCTTTTCTCTCTG 60.143 45.833 0.00 0.00 0.00 3.35
1482 1805 5.176958 TGTTTGTTTGTTTGTTGTTAACCGG 59.823 36.000 0.00 0.00 0.00 5.28
1483 1806 4.778534 TGTTTGTTTGTTGTTAACCGGA 57.221 36.364 9.46 0.00 0.00 5.14
1484 1807 4.734917 TGTTTGTTTGTTGTTAACCGGAG 58.265 39.130 9.46 0.00 0.00 4.63
1485 1808 4.458295 TGTTTGTTTGTTGTTAACCGGAGA 59.542 37.500 9.46 0.00 0.00 3.71
2050 2412 2.205911 TGCGTCAACTTTTCGTGATGA 58.794 42.857 0.00 0.00 0.00 2.92
2051 2413 2.805671 TGCGTCAACTTTTCGTGATGAT 59.194 40.909 0.00 0.00 0.00 2.45
2052 2414 3.155998 GCGTCAACTTTTCGTGATGATG 58.844 45.455 0.00 0.00 0.00 3.07
2053 2415 3.155998 CGTCAACTTTTCGTGATGATGC 58.844 45.455 0.00 0.00 0.00 3.91
2054 2416 3.492313 GTCAACTTTTCGTGATGATGCC 58.508 45.455 0.00 0.00 0.00 4.40
2057 2419 0.378257 CTTTTCGTGATGATGCCGGG 59.622 55.000 2.18 0.00 0.00 5.73
2090 3771 4.875561 AGAGTAGGCTCGACTTTTCTTT 57.124 40.909 0.00 0.00 46.03 2.52
2091 3772 4.811908 AGAGTAGGCTCGACTTTTCTTTC 58.188 43.478 0.00 0.00 46.03 2.62
2092 3773 4.525100 AGAGTAGGCTCGACTTTTCTTTCT 59.475 41.667 0.00 0.00 46.03 2.52
2093 3774 5.011227 AGAGTAGGCTCGACTTTTCTTTCTT 59.989 40.000 0.00 0.00 46.03 2.52
2273 4219 4.335400 TGAACAAGATATATCGGCTGCA 57.665 40.909 7.08 2.48 0.00 4.41
2290 4237 1.531739 GCAACCAAGGGGATTTGCGA 61.532 55.000 0.00 0.00 36.71 5.10
2304 4251 0.956633 TTGCGACGACTTAGGTGAGT 59.043 50.000 0.00 0.00 0.00 3.41
2306 4255 0.520404 GCGACGACTTAGGTGAGTGA 59.480 55.000 0.00 0.00 0.00 3.41
2326 4284 0.758734 TGGGAGATGGCGTAATCAGG 59.241 55.000 2.91 0.00 0.00 3.86
2373 4367 3.495377 AGATGACATCTACGAGACTACGC 59.505 47.826 16.51 0.00 38.00 4.42
2393 4389 1.457643 TATGGTGGAGGGGCGAGAG 60.458 63.158 0.00 0.00 0.00 3.20
2395 4391 2.444895 GGTGGAGGGGCGAGAGAT 60.445 66.667 0.00 0.00 0.00 2.75
2401 4397 3.219928 GGGGCGAGAGATGAGCGA 61.220 66.667 0.00 0.00 0.00 4.93
2407 4403 1.996191 GCGAGAGATGAGCGAAAAAGT 59.004 47.619 0.00 0.00 0.00 2.66
2408 4404 2.222685 GCGAGAGATGAGCGAAAAAGTG 60.223 50.000 0.00 0.00 0.00 3.16
2444 4478 1.653920 CTTGTCGTCGCGTTCGAGAC 61.654 60.000 23.25 16.45 46.46 3.36
2486 4520 0.110419 CGGCGCGTTTGAGAAATTGA 60.110 50.000 8.43 0.00 0.00 2.57
2518 4552 7.339721 TGACTAGTGTTAGGGTTTAGAGATCTG 59.660 40.741 0.00 0.00 0.00 2.90
2526 4560 5.590818 AGGGTTTAGAGATCTGGACAACTA 58.409 41.667 0.00 0.00 0.00 2.24
2550 4586 1.364171 CGGGGTGAAGATAGAGCCG 59.636 63.158 0.00 0.00 0.00 5.52
2574 4615 4.387026 TTCAGATCCAATGGTCCAAAGT 57.613 40.909 0.00 0.00 0.00 2.66
2647 4688 7.064134 TGCCTAAATTCACACAAACGACTATAG 59.936 37.037 0.00 0.00 0.00 1.31
2735 5004 3.808174 CGATAGGTTGGCTAGGTTTAAGC 59.192 47.826 0.00 0.00 39.33 3.09
2758 5030 3.922171 AGGTCTAGCAAAAGGGAGATG 57.078 47.619 0.00 0.00 0.00 2.90
2771 5043 2.507471 AGGGAGATGTGAACCAGATTCC 59.493 50.000 0.00 0.00 36.36 3.01
2773 5045 2.168521 GGAGATGTGAACCAGATTCCGA 59.831 50.000 0.00 0.00 36.36 4.55
2796 5068 2.568623 AAGCTAAGTTGTCCCCAGTG 57.431 50.000 0.00 0.00 0.00 3.66
2797 5069 1.435256 AGCTAAGTTGTCCCCAGTGT 58.565 50.000 0.00 0.00 0.00 3.55
2798 5070 1.348036 AGCTAAGTTGTCCCCAGTGTC 59.652 52.381 0.00 0.00 0.00 3.67
2799 5071 1.939838 GCTAAGTTGTCCCCAGTGTCG 60.940 57.143 0.00 0.00 0.00 4.35
2802 5074 1.597027 GTTGTCCCCAGTGTCGTGG 60.597 63.158 0.00 0.00 37.34 4.94
2803 5075 2.067605 TTGTCCCCAGTGTCGTGGT 61.068 57.895 0.00 0.00 35.60 4.16
2804 5076 1.628238 TTGTCCCCAGTGTCGTGGTT 61.628 55.000 0.00 0.00 35.60 3.67
2809 5081 1.337823 CCCCAGTGTCGTGGTTCTAAG 60.338 57.143 0.00 0.00 35.60 2.18
2811 5083 2.609737 CCCAGTGTCGTGGTTCTAAGTC 60.610 54.545 0.00 0.00 35.60 3.01
2812 5084 2.296471 CCAGTGTCGTGGTTCTAAGTCT 59.704 50.000 0.00 0.00 32.32 3.24
2813 5085 3.309388 CAGTGTCGTGGTTCTAAGTCTG 58.691 50.000 0.00 0.00 0.00 3.51
2814 5086 3.004419 CAGTGTCGTGGTTCTAAGTCTGA 59.996 47.826 0.00 0.00 0.00 3.27
2815 5087 3.004524 AGTGTCGTGGTTCTAAGTCTGAC 59.995 47.826 0.00 0.00 0.00 3.51
2816 5088 2.953648 TGTCGTGGTTCTAAGTCTGACA 59.046 45.455 10.88 0.00 33.14 3.58
2817 5089 3.004419 TGTCGTGGTTCTAAGTCTGACAG 59.996 47.826 10.88 0.00 31.99 3.51
2819 5091 4.214971 GTCGTGGTTCTAAGTCTGACAGTA 59.785 45.833 10.88 1.08 0.00 2.74
2820 5092 4.454847 TCGTGGTTCTAAGTCTGACAGTAG 59.545 45.833 10.88 10.72 0.00 2.57
2821 5093 4.215827 CGTGGTTCTAAGTCTGACAGTAGT 59.784 45.833 10.88 0.00 0.00 2.73
2822 5094 5.462405 GTGGTTCTAAGTCTGACAGTAGTG 58.538 45.833 10.88 0.00 0.00 2.74
2823 5095 5.009811 GTGGTTCTAAGTCTGACAGTAGTGT 59.990 44.000 10.88 1.90 40.71 3.55
2824 5096 6.206243 GTGGTTCTAAGTCTGACAGTAGTGTA 59.794 42.308 10.88 0.00 36.88 2.90
2825 5097 6.430308 TGGTTCTAAGTCTGACAGTAGTGTAG 59.570 42.308 10.88 2.46 36.88 2.74
2826 5098 6.127952 GGTTCTAAGTCTGACAGTAGTGTAGG 60.128 46.154 10.88 0.00 36.88 3.18
2828 5100 3.088789 AGTCTGACAGTAGTGTAGGGG 57.911 52.381 10.88 0.00 36.88 4.79
2829 5101 2.100989 GTCTGACAGTAGTGTAGGGGG 58.899 57.143 2.39 0.00 36.88 5.40
2849 5553 4.140734 GGGGGTACTAAGGAGAGGTAAGAT 60.141 50.000 0.00 0.00 0.00 2.40
2852 5556 5.162958 GGGTACTAAGGAGAGGTAAGATCCT 60.163 48.000 0.00 0.00 45.50 3.24
2854 5558 7.170277 GGTACTAAGGAGAGGTAAGATCCTAG 58.830 46.154 0.00 0.00 42.72 3.02
2855 5559 5.637127 ACTAAGGAGAGGTAAGATCCTAGC 58.363 45.833 0.00 0.00 42.72 3.42
2857 5561 5.933846 AAGGAGAGGTAAGATCCTAGCTA 57.066 43.478 3.05 0.00 42.72 3.32
2858 5562 6.477901 AAGGAGAGGTAAGATCCTAGCTAT 57.522 41.667 3.05 0.21 42.72 2.97
2861 5565 5.281297 GGAGAGGTAAGATCCTAGCTATGGA 60.281 48.000 12.51 12.51 38.02 3.41
2862 5566 5.826643 AGAGGTAAGATCCTAGCTATGGAG 58.173 45.833 14.62 0.00 38.02 3.86
2863 5567 5.314841 AGAGGTAAGATCCTAGCTATGGAGT 59.685 44.000 14.62 7.57 38.02 3.85
2865 5569 6.727394 AGGTAAGATCCTAGCTATGGAGTAG 58.273 44.000 14.62 0.00 36.99 2.57
2866 5570 6.276092 AGGTAAGATCCTAGCTATGGAGTAGT 59.724 42.308 14.62 1.99 36.99 2.73
2867 5571 6.949463 GGTAAGATCCTAGCTATGGAGTAGTT 59.051 42.308 14.62 9.14 36.99 2.24
2868 5572 6.909550 AAGATCCTAGCTATGGAGTAGTTG 57.090 41.667 14.62 0.00 36.99 3.16
2869 5573 5.959512 AGATCCTAGCTATGGAGTAGTTGT 58.040 41.667 14.62 0.59 36.99 3.32
2870 5574 5.772672 AGATCCTAGCTATGGAGTAGTTGTG 59.227 44.000 14.62 0.00 36.99 3.33
2871 5575 3.637229 TCCTAGCTATGGAGTAGTTGTGC 59.363 47.826 7.59 0.00 32.72 4.57
2872 5576 3.384789 CCTAGCTATGGAGTAGTTGTGCA 59.615 47.826 0.00 0.00 32.72 4.57
2873 5577 3.252974 AGCTATGGAGTAGTTGTGCAC 57.747 47.619 10.75 10.75 32.72 4.57
2874 5578 2.567169 AGCTATGGAGTAGTTGTGCACA 59.433 45.455 17.42 17.42 32.72 4.57
2875 5579 2.673368 GCTATGGAGTAGTTGTGCACAC 59.327 50.000 21.56 14.79 32.72 3.82
2887 5591 3.493272 TTGTGCACACAAGTGTTTTACG 58.507 40.909 21.56 0.00 45.42 3.18
2888 5592 3.188667 TTGTGCACACAAGTGTTTTACGA 59.811 39.130 21.56 0.00 45.42 3.43
2889 5593 4.670478 TTGTGCACACAAGTGTTTTACGAG 60.670 41.667 21.56 0.00 45.42 4.18
2890 5594 7.044025 TTGTGCACACAAGTGTTTTACGAGT 62.044 40.000 21.56 0.00 45.42 4.18
2891 5595 8.431537 TTGTGCACACAAGTGTTTTACGAGTT 62.432 38.462 21.56 0.00 45.42 3.01
2894 5598 5.255596 CACACAAGTGTTTTACGAGTTCAG 58.744 41.667 2.55 0.00 42.83 3.02
2895 5599 4.331717 ACACAAGTGTTTTACGAGTTCAGG 59.668 41.667 0.00 0.00 41.83 3.86
2896 5600 3.311596 ACAAGTGTTTTACGAGTTCAGGC 59.688 43.478 0.00 0.00 0.00 4.85
2897 5601 2.490991 AGTGTTTTACGAGTTCAGGCC 58.509 47.619 0.00 0.00 0.00 5.19
2900 5604 2.158726 TGTTTTACGAGTTCAGGCCCTT 60.159 45.455 0.00 0.00 0.00 3.95
2902 5606 1.640917 TTACGAGTTCAGGCCCTTCT 58.359 50.000 0.00 0.00 0.00 2.85
2903 5607 1.183549 TACGAGTTCAGGCCCTTCTC 58.816 55.000 0.00 1.73 0.00 2.87
2904 5608 1.153745 CGAGTTCAGGCCCTTCTCG 60.154 63.158 17.87 17.87 41.02 4.04
2905 5609 1.219393 GAGTTCAGGCCCTTCTCGG 59.781 63.158 0.00 0.00 0.00 4.63
2920 5936 1.549170 TCTCGGAAGAAGTAACAGCCC 59.451 52.381 0.00 0.00 41.32 5.19
2925 5941 3.487372 GGAAGAAGTAACAGCCCAAAGT 58.513 45.455 0.00 0.00 0.00 2.66
2926 5942 3.502595 GGAAGAAGTAACAGCCCAAAGTC 59.497 47.826 0.00 0.00 0.00 3.01
2928 5944 4.009370 AGAAGTAACAGCCCAAAGTCTC 57.991 45.455 0.00 0.00 0.00 3.36
2929 5945 2.457366 AGTAACAGCCCAAAGTCTCG 57.543 50.000 0.00 0.00 0.00 4.04
2930 5946 1.002087 AGTAACAGCCCAAAGTCTCGG 59.998 52.381 0.00 0.00 0.00 4.63
2931 5947 1.001633 GTAACAGCCCAAAGTCTCGGA 59.998 52.381 0.00 0.00 0.00 4.55
2932 5948 0.035458 AACAGCCCAAAGTCTCGGAG 59.965 55.000 0.00 0.00 0.00 4.63
2933 5949 1.743252 CAGCCCAAAGTCTCGGAGC 60.743 63.158 0.00 0.00 0.00 4.70
2934 5950 2.436824 GCCCAAAGTCTCGGAGCC 60.437 66.667 0.00 0.00 0.00 4.70
2935 5951 2.269241 CCCAAAGTCTCGGAGCCC 59.731 66.667 0.00 0.00 0.00 5.19
2953 5969 3.148279 GGAGGCGGTCGACTGGAT 61.148 66.667 25.20 5.10 30.74 3.41
2954 5970 2.722201 GGAGGCGGTCGACTGGATT 61.722 63.158 25.20 3.32 30.74 3.01
2957 5973 1.884579 GAGGCGGTCGACTGGATTATA 59.115 52.381 25.20 0.00 30.74 0.98
2958 5974 2.492484 GAGGCGGTCGACTGGATTATAT 59.508 50.000 25.20 0.00 30.74 0.86
2959 5975 2.231478 AGGCGGTCGACTGGATTATATG 59.769 50.000 25.20 0.09 28.47 1.78
2960 5976 2.029290 GGCGGTCGACTGGATTATATGT 60.029 50.000 25.20 0.00 0.00 2.29
2961 5977 2.987149 GCGGTCGACTGGATTATATGTG 59.013 50.000 25.20 0.00 0.00 3.21
2962 5978 3.552273 GCGGTCGACTGGATTATATGTGT 60.552 47.826 25.20 0.00 0.00 3.72
2963 5979 3.981416 CGGTCGACTGGATTATATGTGTG 59.019 47.826 16.99 0.00 0.00 3.82
2965 5981 5.223382 GGTCGACTGGATTATATGTGTGAG 58.777 45.833 16.46 0.00 0.00 3.51
2966 5982 5.009710 GGTCGACTGGATTATATGTGTGAGA 59.990 44.000 16.46 0.00 0.00 3.27
2967 5983 6.146216 GTCGACTGGATTATATGTGTGAGAG 58.854 44.000 8.70 0.00 0.00 3.20
2970 5986 7.501225 TCGACTGGATTATATGTGTGAGAGTTA 59.499 37.037 0.00 0.00 0.00 2.24
2971 5987 7.591795 CGACTGGATTATATGTGTGAGAGTTAC 59.408 40.741 0.00 0.00 0.00 2.50
2972 5988 8.306313 ACTGGATTATATGTGTGAGAGTTACA 57.694 34.615 0.00 0.00 0.00 2.41
2973 5989 8.417106 ACTGGATTATATGTGTGAGAGTTACAG 58.583 37.037 0.00 0.00 0.00 2.74
2974 5990 7.726216 TGGATTATATGTGTGAGAGTTACAGG 58.274 38.462 0.00 0.00 0.00 4.00
2975 5991 7.155328 GGATTATATGTGTGAGAGTTACAGGG 58.845 42.308 0.00 0.00 0.00 4.45
2976 5992 6.479972 TTATATGTGTGAGAGTTACAGGGG 57.520 41.667 0.00 0.00 0.00 4.79
2977 5993 2.097110 TGTGTGAGAGTTACAGGGGT 57.903 50.000 0.00 0.00 0.00 4.95
2978 5994 1.691976 TGTGTGAGAGTTACAGGGGTG 59.308 52.381 0.00 0.00 0.00 4.61
2979 5995 0.685097 TGTGAGAGTTACAGGGGTGC 59.315 55.000 0.00 0.00 0.00 5.01
2980 5996 0.389948 GTGAGAGTTACAGGGGTGCG 60.390 60.000 0.00 0.00 0.00 5.34
2981 5997 0.541063 TGAGAGTTACAGGGGTGCGA 60.541 55.000 0.00 0.00 0.00 5.10
2982 5998 0.606604 GAGAGTTACAGGGGTGCGAA 59.393 55.000 0.00 0.00 0.00 4.70
2983 5999 0.320697 AGAGTTACAGGGGTGCGAAC 59.679 55.000 0.00 0.00 0.00 3.95
2984 6000 0.672711 GAGTTACAGGGGTGCGAACC 60.673 60.000 2.96 2.96 0.00 3.62
2991 6007 4.611961 GGGTGCGAACCCTTCTAC 57.388 61.111 25.95 0.00 46.39 2.59
2992 6008 1.078637 GGGTGCGAACCCTTCTACC 60.079 63.158 25.95 0.00 46.39 3.18
2993 6009 1.675219 GGTGCGAACCCTTCTACCA 59.325 57.895 0.00 0.00 35.74 3.25
2994 6010 0.391263 GGTGCGAACCCTTCTACCAG 60.391 60.000 0.00 0.00 35.74 4.00
2995 6011 0.320697 GTGCGAACCCTTCTACCAGT 59.679 55.000 0.00 0.00 0.00 4.00
2996 6012 0.320374 TGCGAACCCTTCTACCAGTG 59.680 55.000 0.00 0.00 0.00 3.66
2997 6013 0.391263 GCGAACCCTTCTACCAGTGG 60.391 60.000 7.91 7.91 0.00 4.00
2998 6014 1.263356 CGAACCCTTCTACCAGTGGA 58.737 55.000 18.40 0.00 0.00 4.02
2999 6015 1.204941 CGAACCCTTCTACCAGTGGAG 59.795 57.143 18.40 9.20 0.00 3.86
3000 6016 1.555533 GAACCCTTCTACCAGTGGAGG 59.444 57.143 18.40 12.07 0.00 4.30
3001 6017 0.252742 ACCCTTCTACCAGTGGAGGG 60.253 60.000 25.59 25.59 37.13 4.30
3002 6018 2.609046 CCTTCTACCAGTGGAGGGG 58.391 63.158 18.40 10.66 34.41 4.79
3003 6019 0.983378 CCTTCTACCAGTGGAGGGGG 60.983 65.000 18.40 7.32 34.41 5.40
3004 6020 0.252742 CTTCTACCAGTGGAGGGGGT 60.253 60.000 18.40 0.00 38.70 4.95
3005 6021 0.546747 TTCTACCAGTGGAGGGGGTG 60.547 60.000 18.40 0.00 36.14 4.61
3006 6022 1.995626 CTACCAGTGGAGGGGGTGG 60.996 68.421 18.40 0.00 36.14 4.61
3009 6025 3.260100 CAGTGGAGGGGGTGGCTT 61.260 66.667 0.00 0.00 0.00 4.35
3010 6026 1.923395 CAGTGGAGGGGGTGGCTTA 60.923 63.158 0.00 0.00 0.00 3.09
3011 6027 1.084842 AGTGGAGGGGGTGGCTTAT 59.915 57.895 0.00 0.00 0.00 1.73
3012 6028 0.345502 AGTGGAGGGGGTGGCTTATA 59.654 55.000 0.00 0.00 0.00 0.98
3013 6029 1.060561 AGTGGAGGGGGTGGCTTATAT 60.061 52.381 0.00 0.00 0.00 0.86
3014 6030 2.183661 AGTGGAGGGGGTGGCTTATATA 59.816 50.000 0.00 0.00 0.00 0.86
3015 6031 2.572104 GTGGAGGGGGTGGCTTATATAG 59.428 54.545 0.00 0.00 0.00 1.31
3016 6032 2.457126 TGGAGGGGGTGGCTTATATAGA 59.543 50.000 0.00 0.00 0.00 1.98
3017 6033 3.108376 GGAGGGGGTGGCTTATATAGAG 58.892 54.545 0.00 0.00 0.00 2.43
3018 6034 3.108376 GAGGGGGTGGCTTATATAGAGG 58.892 54.545 0.00 0.00 0.00 3.69
3019 6035 2.733637 AGGGGGTGGCTTATATAGAGGA 59.266 50.000 0.00 0.00 0.00 3.71
3020 6036 2.838813 GGGGGTGGCTTATATAGAGGAC 59.161 54.545 0.00 0.00 0.00 3.85
3021 6037 2.496470 GGGGTGGCTTATATAGAGGACG 59.504 54.545 0.00 0.00 0.00 4.79
3022 6038 2.094130 GGGTGGCTTATATAGAGGACGC 60.094 54.545 0.00 0.00 0.00 5.19
3023 6039 2.094130 GGTGGCTTATATAGAGGACGCC 60.094 54.545 0.00 0.00 36.64 5.68
3024 6040 2.561419 GTGGCTTATATAGAGGACGCCA 59.439 50.000 0.00 0.00 43.12 5.69
3025 6041 3.006537 GTGGCTTATATAGAGGACGCCAA 59.993 47.826 1.22 0.00 46.30 4.52
3026 6042 3.258372 TGGCTTATATAGAGGACGCCAAG 59.742 47.826 0.00 0.00 42.48 3.61
3027 6043 3.510360 GGCTTATATAGAGGACGCCAAGA 59.490 47.826 0.00 0.00 36.16 3.02
3028 6044 4.487019 GCTTATATAGAGGACGCCAAGAC 58.513 47.826 0.00 0.00 0.00 3.01
3029 6045 4.618693 GCTTATATAGAGGACGCCAAGACC 60.619 50.000 0.00 0.00 34.82 3.85
3030 6046 1.700955 TATAGAGGACGCCAAGACCC 58.299 55.000 0.00 0.00 35.19 4.46
3031 6047 1.049289 ATAGAGGACGCCAAGACCCC 61.049 60.000 0.00 0.00 35.19 4.95
3032 6048 2.449967 TAGAGGACGCCAAGACCCCA 62.450 60.000 0.00 0.00 35.19 4.96
3033 6049 3.316573 GAGGACGCCAAGACCCCAG 62.317 68.421 0.00 0.00 35.19 4.45
3039 6055 4.748144 CCAAGACCCCAGCCAGCC 62.748 72.222 0.00 0.00 0.00 4.85
3040 6056 4.748144 CAAGACCCCAGCCAGCCC 62.748 72.222 0.00 0.00 0.00 5.19
3046 6062 4.473520 CCCAGCCAGCCCACGTAG 62.474 72.222 0.00 0.00 0.00 3.51
3051 6067 4.514577 CCAGCCCACGTAGCGGAG 62.515 72.222 10.71 3.12 34.64 4.63
3052 6068 4.514577 CAGCCCACGTAGCGGAGG 62.515 72.222 4.23 0.00 34.64 4.30
3055 6071 3.387947 CCCACGTAGCGGAGGGTT 61.388 66.667 11.42 0.00 39.99 4.11
3056 6072 2.053865 CCCACGTAGCGGAGGGTTA 61.054 63.158 11.42 0.00 39.99 2.85
3057 6073 1.606885 CCCACGTAGCGGAGGGTTAA 61.607 60.000 11.42 0.00 39.99 2.01
3058 6074 0.247185 CCACGTAGCGGAGGGTTAAA 59.753 55.000 0.00 0.00 0.00 1.52
3059 6075 1.636988 CACGTAGCGGAGGGTTAAAG 58.363 55.000 0.00 0.00 0.00 1.85
3060 6076 1.067354 CACGTAGCGGAGGGTTAAAGT 60.067 52.381 0.00 0.00 0.00 2.66
3061 6077 2.164219 CACGTAGCGGAGGGTTAAAGTA 59.836 50.000 0.00 0.00 0.00 2.24
3062 6078 2.164422 ACGTAGCGGAGGGTTAAAGTAC 59.836 50.000 0.00 0.00 0.00 2.73
3063 6079 2.164219 CGTAGCGGAGGGTTAAAGTACA 59.836 50.000 0.00 0.00 0.00 2.90
3064 6080 3.181483 CGTAGCGGAGGGTTAAAGTACAT 60.181 47.826 0.00 0.00 0.00 2.29
3065 6081 3.994931 AGCGGAGGGTTAAAGTACATT 57.005 42.857 0.00 0.00 0.00 2.71
3066 6082 5.450412 CGTAGCGGAGGGTTAAAGTACATTA 60.450 44.000 0.00 0.00 0.00 1.90
3067 6083 5.425196 AGCGGAGGGTTAAAGTACATTAA 57.575 39.130 0.00 0.00 0.00 1.40
3068 6084 5.425630 AGCGGAGGGTTAAAGTACATTAAG 58.574 41.667 3.61 0.00 0.00 1.85
3069 6085 4.573607 GCGGAGGGTTAAAGTACATTAAGG 59.426 45.833 3.61 0.00 0.00 2.69
3070 6086 5.737860 CGGAGGGTTAAAGTACATTAAGGT 58.262 41.667 3.61 0.00 0.00 3.50
3071 6087 5.814188 CGGAGGGTTAAAGTACATTAAGGTC 59.186 44.000 3.61 2.09 0.00 3.85
3072 6088 6.118170 GGAGGGTTAAAGTACATTAAGGTCC 58.882 44.000 3.61 6.75 0.00 4.46
3073 6089 5.737860 AGGGTTAAAGTACATTAAGGTCCG 58.262 41.667 3.61 0.00 0.00 4.79
3074 6090 4.877823 GGGTTAAAGTACATTAAGGTCCGG 59.122 45.833 3.61 0.00 0.00 5.14
3075 6091 5.491070 GGTTAAAGTACATTAAGGTCCGGT 58.509 41.667 0.00 0.00 0.00 5.28
3076 6092 5.352293 GGTTAAAGTACATTAAGGTCCGGTG 59.648 44.000 0.00 0.00 0.00 4.94
3077 6093 4.628963 AAAGTACATTAAGGTCCGGTGT 57.371 40.909 0.00 0.00 0.00 4.16
3078 6094 4.628963 AAGTACATTAAGGTCCGGTGTT 57.371 40.909 0.00 0.00 0.00 3.32
3079 6095 5.743636 AAGTACATTAAGGTCCGGTGTTA 57.256 39.130 0.00 0.00 0.00 2.41
3080 6096 5.077134 AGTACATTAAGGTCCGGTGTTAC 57.923 43.478 0.00 0.00 0.00 2.50
3081 6097 4.774200 AGTACATTAAGGTCCGGTGTTACT 59.226 41.667 0.00 0.00 0.00 2.24
3082 6098 3.934068 ACATTAAGGTCCGGTGTTACTG 58.066 45.455 0.00 5.34 0.00 2.74
3083 6099 3.267483 CATTAAGGTCCGGTGTTACTGG 58.733 50.000 0.00 0.25 46.14 4.00
3084 6100 2.014010 TAAGGTCCGGTGTTACTGGT 57.986 50.000 0.00 0.00 45.01 4.00
3085 6101 2.014010 AAGGTCCGGTGTTACTGGTA 57.986 50.000 0.00 0.00 45.01 3.25
3086 6102 2.014010 AGGTCCGGTGTTACTGGTAA 57.986 50.000 0.00 0.00 45.01 2.85
3087 6103 1.620323 AGGTCCGGTGTTACTGGTAAC 59.380 52.381 14.51 14.51 45.01 2.50
3088 6104 1.669795 GGTCCGGTGTTACTGGTAACG 60.670 57.143 15.80 6.96 46.19 3.18
3095 6111 3.652274 GTGTTACTGGTAACGCCTTACA 58.348 45.455 20.11 1.77 45.67 2.41
3096 6112 4.248058 GTGTTACTGGTAACGCCTTACAT 58.752 43.478 20.11 0.00 45.67 2.29
3097 6113 5.410067 GTGTTACTGGTAACGCCTTACATA 58.590 41.667 20.11 0.09 45.67 2.29
3098 6114 5.868801 GTGTTACTGGTAACGCCTTACATAA 59.131 40.000 20.11 1.75 45.67 1.90
3099 6115 6.368516 GTGTTACTGGTAACGCCTTACATAAA 59.631 38.462 20.11 0.00 45.67 1.40
3100 6116 6.591062 TGTTACTGGTAACGCCTTACATAAAG 59.409 38.462 15.80 2.98 46.19 1.85
3101 6117 5.156608 ACTGGTAACGCCTTACATAAAGT 57.843 39.130 7.72 3.47 42.51 2.66
3102 6118 4.933400 ACTGGTAACGCCTTACATAAAGTG 59.067 41.667 7.72 0.00 42.51 3.16
3103 6119 4.897140 TGGTAACGCCTTACATAAAGTGT 58.103 39.130 7.72 0.00 42.35 3.55
3104 6120 4.931002 TGGTAACGCCTTACATAAAGTGTC 59.069 41.667 7.72 0.00 40.48 3.67
3105 6121 4.931002 GGTAACGCCTTACATAAAGTGTCA 59.069 41.667 7.72 0.00 42.29 3.58
3106 6122 5.063060 GGTAACGCCTTACATAAAGTGTCAG 59.937 44.000 7.72 0.00 42.29 3.51
3107 6123 3.000727 ACGCCTTACATAAAGTGTCAGC 58.999 45.455 0.00 0.00 42.29 4.26
3108 6124 3.000041 CGCCTTACATAAAGTGTCAGCA 59.000 45.455 0.00 0.00 42.29 4.41
3109 6125 3.623060 CGCCTTACATAAAGTGTCAGCAT 59.377 43.478 0.00 0.00 42.29 3.79
3110 6126 4.494690 CGCCTTACATAAAGTGTCAGCATG 60.495 45.833 0.00 0.00 42.29 4.06
3111 6127 4.635765 GCCTTACATAAAGTGTCAGCATGA 59.364 41.667 0.00 0.00 42.29 3.07
3125 6141 5.939764 TCAGCATGACCATAAAGACTACT 57.060 39.130 0.00 0.00 42.56 2.57
3126 6142 6.299805 TCAGCATGACCATAAAGACTACTT 57.700 37.500 0.00 0.00 42.56 2.24
3127 6143 7.418337 TCAGCATGACCATAAAGACTACTTA 57.582 36.000 0.00 0.00 42.56 2.24
3128 6144 7.847096 TCAGCATGACCATAAAGACTACTTAA 58.153 34.615 0.00 0.00 42.56 1.85
3129 6145 8.486210 TCAGCATGACCATAAAGACTACTTAAT 58.514 33.333 0.00 0.00 42.56 1.40
3130 6146 9.113838 CAGCATGACCATAAAGACTACTTAATT 57.886 33.333 0.00 0.00 39.69 1.40
3138 6154 9.245962 CCATAAAGACTACTTAATTACAGACCG 57.754 37.037 0.00 0.00 35.05 4.79
3139 6155 9.798994 CATAAAGACTACTTAATTACAGACCGT 57.201 33.333 0.00 0.00 35.05 4.83
3142 6158 8.530269 AAGACTACTTAATTACAGACCGTTTG 57.470 34.615 0.00 0.00 34.28 2.93
3143 6159 7.095270 AGACTACTTAATTACAGACCGTTTGG 58.905 38.462 0.00 0.00 42.84 3.28
3144 6160 6.996509 ACTACTTAATTACAGACCGTTTGGA 58.003 36.000 0.00 0.00 39.21 3.53
3145 6161 7.618137 ACTACTTAATTACAGACCGTTTGGAT 58.382 34.615 0.00 0.00 39.21 3.41
3146 6162 8.752187 ACTACTTAATTACAGACCGTTTGGATA 58.248 33.333 0.00 0.00 39.21 2.59
3147 6163 7.838771 ACTTAATTACAGACCGTTTGGATAC 57.161 36.000 0.00 0.00 39.21 2.24
3165 6181 7.575414 TGGATACAGAGTAGATCTTGAACTC 57.425 40.000 13.99 13.99 46.17 3.01
3166 6182 6.547880 TGGATACAGAGTAGATCTTGAACTCC 59.452 42.308 17.00 10.84 46.17 3.85
3167 6183 6.775629 GGATACAGAGTAGATCTTGAACTCCT 59.224 42.308 17.00 8.20 40.42 3.69
3168 6184 5.913137 ACAGAGTAGATCTTGAACTCCTG 57.087 43.478 17.00 15.88 40.42 3.86
3169 6185 4.709397 ACAGAGTAGATCTTGAACTCCTGG 59.291 45.833 17.00 11.33 40.42 4.45
3170 6186 4.709397 CAGAGTAGATCTTGAACTCCTGGT 59.291 45.833 17.00 0.65 40.42 4.00
3171 6187 4.709397 AGAGTAGATCTTGAACTCCTGGTG 59.291 45.833 17.00 0.00 40.42 4.17
3172 6188 3.772025 AGTAGATCTTGAACTCCTGGTGG 59.228 47.826 0.00 0.00 0.00 4.61
3173 6189 2.625639 AGATCTTGAACTCCTGGTGGT 58.374 47.619 0.33 0.00 34.23 4.16
3174 6190 2.569404 AGATCTTGAACTCCTGGTGGTC 59.431 50.000 6.85 6.85 34.23 4.02
3175 6191 0.679505 TCTTGAACTCCTGGTGGTCG 59.320 55.000 9.08 0.00 34.23 4.79
3176 6192 0.679505 CTTGAACTCCTGGTGGTCGA 59.320 55.000 9.08 6.46 34.23 4.20
3177 6193 0.679505 TTGAACTCCTGGTGGTCGAG 59.320 55.000 9.08 0.00 34.23 4.04
3178 6194 0.469331 TGAACTCCTGGTGGTCGAGT 60.469 55.000 9.08 0.00 38.50 4.18
3179 6195 0.038159 GAACTCCTGGTGGTCGAGTG 60.038 60.000 0.00 0.00 36.97 3.51
3180 6196 0.469331 AACTCCTGGTGGTCGAGTGA 60.469 55.000 0.33 0.00 36.97 3.41
3181 6197 0.896019 ACTCCTGGTGGTCGAGTGAG 60.896 60.000 0.33 0.00 35.56 3.51
3182 6198 0.896019 CTCCTGGTGGTCGAGTGAGT 60.896 60.000 0.00 0.00 34.23 3.41
3183 6199 0.894184 TCCTGGTGGTCGAGTGAGTC 60.894 60.000 0.00 0.00 34.23 3.36
3184 6200 0.896019 CCTGGTGGTCGAGTGAGTCT 60.896 60.000 0.00 0.00 0.00 3.24
3185 6201 0.962489 CTGGTGGTCGAGTGAGTCTT 59.038 55.000 0.00 0.00 0.00 3.01
3186 6202 0.959553 TGGTGGTCGAGTGAGTCTTC 59.040 55.000 0.00 0.00 0.00 2.87
3187 6203 0.959553 GGTGGTCGAGTGAGTCTTCA 59.040 55.000 0.00 0.00 0.00 3.02
3188 6204 1.546476 GGTGGTCGAGTGAGTCTTCAT 59.454 52.381 0.00 0.00 35.39 2.57
3189 6205 2.600731 GTGGTCGAGTGAGTCTTCATG 58.399 52.381 0.00 0.00 35.39 3.07
3190 6206 1.546029 TGGTCGAGTGAGTCTTCATGG 59.454 52.381 0.00 0.00 35.39 3.66
3191 6207 1.546476 GGTCGAGTGAGTCTTCATGGT 59.454 52.381 0.00 0.00 35.39 3.55
3192 6208 2.416162 GGTCGAGTGAGTCTTCATGGTC 60.416 54.545 0.00 0.00 35.39 4.02
3193 6209 1.468914 TCGAGTGAGTCTTCATGGTCG 59.531 52.381 0.00 0.00 36.25 4.79
3194 6210 1.468914 CGAGTGAGTCTTCATGGTCGA 59.531 52.381 0.00 0.00 36.66 4.20
3195 6211 2.477021 CGAGTGAGTCTTCATGGTCGAG 60.477 54.545 0.00 0.00 36.66 4.04
3196 6212 2.490115 GAGTGAGTCTTCATGGTCGAGT 59.510 50.000 0.00 0.00 35.39 4.18
3197 6213 2.230025 AGTGAGTCTTCATGGTCGAGTG 59.770 50.000 0.00 0.00 35.39 3.51
3198 6214 2.029828 GTGAGTCTTCATGGTCGAGTGT 60.030 50.000 0.00 0.00 35.39 3.55
3199 6215 2.229062 TGAGTCTTCATGGTCGAGTGTC 59.771 50.000 0.00 0.00 0.00 3.67
3200 6216 2.490115 GAGTCTTCATGGTCGAGTGTCT 59.510 50.000 0.00 0.00 0.00 3.41
3201 6217 2.894126 AGTCTTCATGGTCGAGTGTCTT 59.106 45.455 0.00 0.00 0.00 3.01
3202 6218 3.057174 AGTCTTCATGGTCGAGTGTCTTC 60.057 47.826 0.00 0.00 0.00 2.87
3203 6219 2.890945 TCTTCATGGTCGAGTGTCTTCA 59.109 45.455 0.00 0.00 0.00 3.02
3204 6220 3.511540 TCTTCATGGTCGAGTGTCTTCAT 59.488 43.478 0.00 0.00 0.00 2.57
3205 6221 3.236632 TCATGGTCGAGTGTCTTCATG 57.763 47.619 0.00 0.00 34.89 3.07
3206 6222 2.562738 TCATGGTCGAGTGTCTTCATGT 59.437 45.455 0.00 0.00 35.07 3.21
3207 6223 3.006859 TCATGGTCGAGTGTCTTCATGTT 59.993 43.478 0.00 0.00 35.07 2.71
3208 6224 3.026630 TGGTCGAGTGTCTTCATGTTC 57.973 47.619 0.00 0.00 0.00 3.18
3209 6225 1.986378 GGTCGAGTGTCTTCATGTTCG 59.014 52.381 0.00 0.00 0.00 3.95
3210 6226 2.607282 GGTCGAGTGTCTTCATGTTCGT 60.607 50.000 0.00 0.00 0.00 3.85
3211 6227 2.657372 GTCGAGTGTCTTCATGTTCGTC 59.343 50.000 0.00 0.00 0.00 4.20
3212 6228 1.644295 CGAGTGTCTTCATGTTCGTCG 59.356 52.381 0.00 0.00 0.00 5.12
3213 6229 2.664698 CGAGTGTCTTCATGTTCGTCGA 60.665 50.000 0.00 0.00 0.00 4.20
3214 6230 2.911723 GAGTGTCTTCATGTTCGTCGAG 59.088 50.000 0.00 0.00 0.00 4.04
3215 6231 2.293677 AGTGTCTTCATGTTCGTCGAGT 59.706 45.455 0.00 0.00 0.00 4.18
3216 6232 2.405357 GTGTCTTCATGTTCGTCGAGTG 59.595 50.000 0.00 0.00 0.00 3.51
3217 6233 2.034179 TGTCTTCATGTTCGTCGAGTGT 59.966 45.455 0.00 0.00 0.00 3.55
3218 6234 2.657372 GTCTTCATGTTCGTCGAGTGTC 59.343 50.000 0.00 0.00 0.00 3.67
3219 6235 2.552743 TCTTCATGTTCGTCGAGTGTCT 59.447 45.455 0.00 0.00 0.00 3.41
3220 6236 3.004419 TCTTCATGTTCGTCGAGTGTCTT 59.996 43.478 0.00 0.00 0.00 3.01
3221 6237 2.929960 TCATGTTCGTCGAGTGTCTTC 58.070 47.619 0.00 0.00 0.00 2.87
3222 6238 2.552743 TCATGTTCGTCGAGTGTCTTCT 59.447 45.455 0.00 0.00 0.00 2.85
3223 6239 3.749609 TCATGTTCGTCGAGTGTCTTCTA 59.250 43.478 0.00 0.00 0.00 2.10
3224 6240 3.808116 TGTTCGTCGAGTGTCTTCTAG 57.192 47.619 0.00 0.00 0.00 2.43
3225 6241 3.136763 TGTTCGTCGAGTGTCTTCTAGT 58.863 45.455 0.00 0.00 0.00 2.57
3226 6242 3.186001 TGTTCGTCGAGTGTCTTCTAGTC 59.814 47.826 0.00 0.00 0.00 2.59
3227 6243 2.344950 TCGTCGAGTGTCTTCTAGTCC 58.655 52.381 0.00 0.00 0.00 3.85
3228 6244 1.060842 CGTCGAGTGTCTTCTAGTCCG 59.939 57.143 0.00 0.00 0.00 4.79
3229 6245 2.075338 GTCGAGTGTCTTCTAGTCCGT 58.925 52.381 0.00 0.00 0.00 4.69
3230 6246 2.483491 GTCGAGTGTCTTCTAGTCCGTT 59.517 50.000 0.00 0.00 0.00 4.44
3231 6247 2.483106 TCGAGTGTCTTCTAGTCCGTTG 59.517 50.000 0.00 0.00 0.00 4.10
3232 6248 2.483106 CGAGTGTCTTCTAGTCCGTTGA 59.517 50.000 0.00 0.00 0.00 3.18
3233 6249 3.425094 CGAGTGTCTTCTAGTCCGTTGAG 60.425 52.174 0.00 0.00 0.00 3.02
3234 6250 3.488363 AGTGTCTTCTAGTCCGTTGAGT 58.512 45.455 0.00 0.00 0.00 3.41
3235 6251 3.253677 AGTGTCTTCTAGTCCGTTGAGTG 59.746 47.826 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.532155 GGCAGAGACGCGAGGGAT 61.532 66.667 15.93 0.00 0.00 3.85
5 6 2.461945 CGTAGAGGCAGAGACGCGA 61.462 63.158 15.93 0.00 0.00 5.87
6 7 2.023461 CGTAGAGGCAGAGACGCG 59.977 66.667 3.53 3.53 0.00 6.01
8 9 1.063327 CAGCGTAGAGGCAGAGACG 59.937 63.158 0.00 0.00 38.32 4.18
9 10 1.380524 TACAGCGTAGAGGCAGAGAC 58.619 55.000 0.00 0.00 34.64 3.36
10 11 1.743958 GTTACAGCGTAGAGGCAGAGA 59.256 52.381 0.00 0.00 34.64 3.10
11 12 1.746220 AGTTACAGCGTAGAGGCAGAG 59.254 52.381 0.00 0.00 34.64 3.35
12 13 1.835494 AGTTACAGCGTAGAGGCAGA 58.165 50.000 0.00 0.00 34.64 4.26
13 14 2.656560 AAGTTACAGCGTAGAGGCAG 57.343 50.000 0.00 0.00 34.64 4.85
14 15 3.087031 AGTAAGTTACAGCGTAGAGGCA 58.913 45.455 15.28 0.00 34.64 4.75
15 16 3.488890 GGAGTAAGTTACAGCGTAGAGGC 60.489 52.174 15.28 0.00 0.00 4.70
16 17 3.066481 GGGAGTAAGTTACAGCGTAGAGG 59.934 52.174 15.28 0.00 0.00 3.69
17 18 3.946558 AGGGAGTAAGTTACAGCGTAGAG 59.053 47.826 15.28 0.00 0.00 2.43
18 19 3.960571 AGGGAGTAAGTTACAGCGTAGA 58.039 45.455 15.28 0.00 0.00 2.59
19 20 4.715527 AAGGGAGTAAGTTACAGCGTAG 57.284 45.455 15.28 0.00 0.00 3.51
20 21 6.780457 AATAAGGGAGTAAGTTACAGCGTA 57.220 37.500 15.28 1.75 0.00 4.42
21 22 5.672421 AATAAGGGAGTAAGTTACAGCGT 57.328 39.130 15.28 0.00 0.00 5.07
22 23 8.658499 AAATAATAAGGGAGTAAGTTACAGCG 57.342 34.615 15.28 0.00 0.00 5.18
62 63 5.560722 TTAGGAGGAAGAAACATGTCACA 57.439 39.130 0.00 0.00 0.00 3.58
63 64 6.877611 TTTTAGGAGGAAGAAACATGTCAC 57.122 37.500 0.00 0.00 0.00 3.67
94 95 0.618458 TTTGGGTGGCTAGCTGTAGG 59.382 55.000 15.72 0.00 0.00 3.18
119 120 4.641094 GCTGAGATATATACCAGTAGGCGT 59.359 45.833 12.66 0.00 39.06 5.68
121 122 5.419155 TGTGCTGAGATATATACCAGTAGGC 59.581 44.000 12.66 3.67 39.06 3.93
125 126 9.935241 CTTTAATGTGCTGAGATATATACCAGT 57.065 33.333 12.66 0.32 0.00 4.00
126 127 9.935241 ACTTTAATGTGCTGAGATATATACCAG 57.065 33.333 8.66 8.66 0.00 4.00
181 182 4.501714 GGCGCGTACGTCCATGGA 62.502 66.667 17.90 11.44 42.83 3.41
220 230 1.199615 GGAGGAGGAGGAGGAAACTG 58.800 60.000 0.00 0.00 44.43 3.16
222 232 0.324460 TCGGAGGAGGAGGAGGAAAC 60.324 60.000 0.00 0.00 0.00 2.78
225 235 0.186386 GATTCGGAGGAGGAGGAGGA 59.814 60.000 0.00 0.00 0.00 3.71
226 236 1.175983 CGATTCGGAGGAGGAGGAGG 61.176 65.000 0.00 0.00 0.00 4.30
229 239 2.731374 GCGATTCGGAGGAGGAGG 59.269 66.667 8.34 0.00 0.00 4.30
232 242 2.840102 AGGGCGATTCGGAGGAGG 60.840 66.667 8.34 0.00 0.00 4.30
235 245 4.286320 CGGAGGGCGATTCGGAGG 62.286 72.222 8.34 0.00 0.00 4.30
258 268 1.143277 TGGACTTGGTAAAAAGCCGGA 59.857 47.619 5.05 0.00 0.00 5.14
259 269 1.539827 CTGGACTTGGTAAAAAGCCGG 59.460 52.381 0.00 0.00 0.00 6.13
264 274 3.057586 TCCCCTCTGGACTTGGTAAAAA 58.942 45.455 0.00 0.00 38.61 1.94
265 275 2.642807 CTCCCCTCTGGACTTGGTAAAA 59.357 50.000 0.00 0.00 38.61 1.52
278 299 0.256464 CGTACTCTGGTCTCCCCTCT 59.744 60.000 0.00 0.00 0.00 3.69
284 305 9.148104 ACAAAATAAATTACGTACTCTGGTCTC 57.852 33.333 0.00 0.00 0.00 3.36
285 306 9.498176 AACAAAATAAATTACGTACTCTGGTCT 57.502 29.630 0.00 0.00 0.00 3.85
287 308 9.498176 AGAACAAAATAAATTACGTACTCTGGT 57.502 29.630 0.00 0.00 0.00 4.00
288 309 9.968743 GAGAACAAAATAAATTACGTACTCTGG 57.031 33.333 0.00 0.00 0.00 3.86
295 316 9.968743 GATCGAAGAGAACAAAATAAATTACGT 57.031 29.630 0.00 0.00 43.63 3.57
304 325 4.911390 ACCCAGATCGAAGAGAACAAAAT 58.089 39.130 0.00 0.00 43.63 1.82
313 334 3.835978 TGTAAGGAAACCCAGATCGAAGA 59.164 43.478 0.00 0.00 45.75 2.87
314 335 3.933332 GTGTAAGGAAACCCAGATCGAAG 59.067 47.826 0.00 0.00 0.00 3.79
317 338 2.236395 AGGTGTAAGGAAACCCAGATCG 59.764 50.000 0.00 0.00 37.13 3.69
318 339 3.263425 TGAGGTGTAAGGAAACCCAGATC 59.737 47.826 0.00 0.00 37.13 2.75
319 340 3.256704 TGAGGTGTAAGGAAACCCAGAT 58.743 45.455 0.00 0.00 37.13 2.90
320 341 2.696775 TGAGGTGTAAGGAAACCCAGA 58.303 47.619 0.00 0.00 37.13 3.86
321 342 3.072476 TCTTGAGGTGTAAGGAAACCCAG 59.928 47.826 0.00 0.00 37.13 4.45
338 359 0.108186 ATCTGCCGCACGAATCTTGA 60.108 50.000 0.00 0.00 0.00 3.02
372 393 1.577328 AAATCAGCAGGCGTCGTTGG 61.577 55.000 0.00 0.00 0.00 3.77
403 424 8.189460 AGACCAGATCATCGTTTAAGTTAGTAC 58.811 37.037 0.00 0.00 0.00 2.73
436 472 2.011222 CCATGGGTTGATTTTGCATGC 58.989 47.619 11.82 11.82 0.00 4.06
437 473 3.055675 AGTCCATGGGTTGATTTTGCATG 60.056 43.478 13.02 0.00 0.00 4.06
438 474 3.175594 AGTCCATGGGTTGATTTTGCAT 58.824 40.909 13.02 0.00 0.00 3.96
439 475 2.562298 GAGTCCATGGGTTGATTTTGCA 59.438 45.455 13.02 0.00 0.00 4.08
486 524 1.072154 CACAAGACGCGTGCATATACG 60.072 52.381 20.70 0.00 46.28 3.06
487 525 2.628194 CACAAGACGCGTGCATATAC 57.372 50.000 20.70 0.00 0.00 1.47
496 534 4.448891 CAAGAATATATGCACAAGACGCG 58.551 43.478 3.53 3.53 0.00 6.01
501 539 7.639850 CGTACAAACCAAGAATATATGCACAAG 59.360 37.037 0.00 0.00 0.00 3.16
502 540 7.119992 ACGTACAAACCAAGAATATATGCACAA 59.880 33.333 0.00 0.00 0.00 3.33
503 541 6.596106 ACGTACAAACCAAGAATATATGCACA 59.404 34.615 0.00 0.00 0.00 4.57
504 542 7.011828 ACGTACAAACCAAGAATATATGCAC 57.988 36.000 0.00 0.00 0.00 4.57
523 605 3.181461 TGGCTACTACTCCTCCTACGTAC 60.181 52.174 0.00 0.00 0.00 3.67
527 609 2.442502 TCCTGGCTACTACTCCTCCTAC 59.557 54.545 0.00 0.00 0.00 3.18
550 641 3.827722 CCCCCTTTAATAATTCGGAGCA 58.172 45.455 0.00 0.00 0.00 4.26
569 660 0.919289 TCAATCAACCTCCCTCCCCC 60.919 60.000 0.00 0.00 0.00 5.40
570 661 0.999712 TTCAATCAACCTCCCTCCCC 59.000 55.000 0.00 0.00 0.00 4.81
571 662 1.064389 CCTTCAATCAACCTCCCTCCC 60.064 57.143 0.00 0.00 0.00 4.30
572 663 1.916181 TCCTTCAATCAACCTCCCTCC 59.084 52.381 0.00 0.00 0.00 4.30
573 664 3.721087 TTCCTTCAATCAACCTCCCTC 57.279 47.619 0.00 0.00 0.00 4.30
574 665 3.767711 GTTTCCTTCAATCAACCTCCCT 58.232 45.455 0.00 0.00 0.00 4.20
575 666 2.488153 CGTTTCCTTCAATCAACCTCCC 59.512 50.000 0.00 0.00 0.00 4.30
576 667 2.488153 CCGTTTCCTTCAATCAACCTCC 59.512 50.000 0.00 0.00 0.00 4.30
577 668 3.408634 TCCGTTTCCTTCAATCAACCTC 58.591 45.455 0.00 0.00 0.00 3.85
579 670 3.057526 CCTTCCGTTTCCTTCAATCAACC 60.058 47.826 0.00 0.00 0.00 3.77
580 671 3.611766 GCCTTCCGTTTCCTTCAATCAAC 60.612 47.826 0.00 0.00 0.00 3.18
581 672 2.556622 GCCTTCCGTTTCCTTCAATCAA 59.443 45.455 0.00 0.00 0.00 2.57
582 673 2.159382 GCCTTCCGTTTCCTTCAATCA 58.841 47.619 0.00 0.00 0.00 2.57
584 675 2.286365 TGCCTTCCGTTTCCTTCAAT 57.714 45.000 0.00 0.00 0.00 2.57
589 686 6.127451 CCTTTTATTTATGCCTTCCGTTTCCT 60.127 38.462 0.00 0.00 0.00 3.36
590 687 6.040247 CCTTTTATTTATGCCTTCCGTTTCC 58.960 40.000 0.00 0.00 0.00 3.13
621 720 2.115343 ATCCTTCTCGTTTTCAGGGC 57.885 50.000 0.00 0.00 0.00 5.19
685 793 2.962569 CCTTGGCGTCGAGTGAGA 59.037 61.111 3.05 0.00 0.00 3.27
686 794 2.811317 GCCTTGGCGTCGAGTGAG 60.811 66.667 3.05 0.00 0.00 3.51
689 797 4.379243 CTGGCCTTGGCGTCGAGT 62.379 66.667 3.32 0.00 0.00 4.18
712 828 1.716826 TTGGTTGGCGTCCACGTTTC 61.717 55.000 0.36 0.00 42.22 2.78
804 927 6.039159 AGGAAAGAAACTCAGAAAGAAGCAAG 59.961 38.462 0.00 0.00 0.00 4.01
806 929 5.440610 AGGAAAGAAACTCAGAAAGAAGCA 58.559 37.500 0.00 0.00 0.00 3.91
807 930 5.333721 CGAGGAAAGAAACTCAGAAAGAAGC 60.334 44.000 0.00 0.00 33.36 3.86
808 931 5.333721 GCGAGGAAAGAAACTCAGAAAGAAG 60.334 44.000 0.00 0.00 33.36 2.85
809 932 4.511826 GCGAGGAAAGAAACTCAGAAAGAA 59.488 41.667 0.00 0.00 33.36 2.52
810 933 4.058817 GCGAGGAAAGAAACTCAGAAAGA 58.941 43.478 0.00 0.00 33.36 2.52
811 934 3.187432 GGCGAGGAAAGAAACTCAGAAAG 59.813 47.826 0.00 0.00 33.36 2.62
812 935 3.139077 GGCGAGGAAAGAAACTCAGAAA 58.861 45.455 0.00 0.00 33.36 2.52
813 936 2.104111 TGGCGAGGAAAGAAACTCAGAA 59.896 45.455 0.00 0.00 33.36 3.02
814 937 1.691976 TGGCGAGGAAAGAAACTCAGA 59.308 47.619 0.00 0.00 33.36 3.27
815 938 1.801178 GTGGCGAGGAAAGAAACTCAG 59.199 52.381 0.00 0.00 33.36 3.35
816 939 1.542547 GGTGGCGAGGAAAGAAACTCA 60.543 52.381 0.00 0.00 33.36 3.41
867 990 2.658593 GGTCATGGACGGATCGCG 60.659 66.667 0.00 0.00 32.65 5.87
887 1024 3.791586 GGAGGAGCAGTGGGAGGC 61.792 72.222 0.00 0.00 0.00 4.70
919 1087 2.108976 GGAAGGCGATGGCGATGA 59.891 61.111 0.00 0.00 41.24 2.92
944 1112 4.498520 ACACGCAGGCGATCGAGG 62.499 66.667 21.57 8.04 42.83 4.63
946 1114 2.000215 ATACACACGCAGGCGATCGA 62.000 55.000 21.57 1.78 42.83 3.59
947 1115 0.317519 TATACACACGCAGGCGATCG 60.318 55.000 21.62 11.69 42.83 3.69
948 1116 2.065993 ATATACACACGCAGGCGATC 57.934 50.000 21.62 0.00 42.83 3.69
949 1117 2.094700 CCTATATACACACGCAGGCGAT 60.095 50.000 21.62 5.37 42.83 4.58
950 1118 1.268625 CCTATATACACACGCAGGCGA 59.731 52.381 21.62 0.00 42.83 5.54
951 1119 1.698165 CCTATATACACACGCAGGCG 58.302 55.000 12.71 12.71 46.03 5.52
957 1125 0.601558 AGGCCGCCTATATACACACG 59.398 55.000 11.25 0.00 28.47 4.49
1092 1345 1.813753 CAGTCATAACGGCGGTGGG 60.814 63.158 8.19 0.00 0.00 4.61
1095 1348 2.582436 CCCAGTCATAACGGCGGT 59.418 61.111 13.24 7.51 0.00 5.68
1102 1355 1.134521 CGTAGCAAGGCCCAGTCATAA 60.135 52.381 0.00 0.00 0.00 1.90
1140 1405 3.371063 CTGGCACCCAAGCTGCTG 61.371 66.667 1.35 0.00 34.84 4.41
1145 1410 4.715523 TACGGCTGGCACCCAAGC 62.716 66.667 1.08 0.00 30.80 4.01
1146 1411 2.746277 GTACGGCTGGCACCCAAG 60.746 66.667 1.08 0.00 30.80 3.61
1147 1412 4.690719 CGTACGGCTGGCACCCAA 62.691 66.667 7.57 0.00 30.80 4.12
1210 1502 1.448013 GCCAGCAACTCCGAGTACC 60.448 63.158 0.26 0.00 0.00 3.34
1241 1533 1.150567 CGCCCTTTCTCAGCAGATCG 61.151 60.000 0.00 0.00 0.00 3.69
1248 1540 2.815647 GCCGTCGCCCTTTCTCAG 60.816 66.667 0.00 0.00 0.00 3.35
1249 1541 4.735132 CGCCGTCGCCCTTTCTCA 62.735 66.667 0.00 0.00 0.00 3.27
1414 1720 0.592148 AAACGCGGCGGTTAATTTGA 59.408 45.000 25.83 0.00 33.98 2.69
1452 1775 5.515184 ACAACAAACAAACAAACAAAAGCC 58.485 33.333 0.00 0.00 0.00 4.35
1482 1805 1.540267 GCATCATGCATCCACCATCTC 59.460 52.381 4.20 0.00 44.26 2.75
1483 1806 1.617322 GCATCATGCATCCACCATCT 58.383 50.000 4.20 0.00 44.26 2.90
1783 2106 4.316823 TCCTGGTCCTGGCCGTCT 62.317 66.667 9.96 0.00 0.00 4.18
1790 2113 4.436998 GGCGTCGTCCTGGTCCTG 62.437 72.222 0.00 0.00 0.00 3.86
1849 2187 4.144727 TCGGCCTCCTCCTCCTCC 62.145 72.222 0.00 0.00 0.00 4.30
1850 2188 2.520741 CTCGGCCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
1851 2189 4.150454 CCTCGGCCTCCTCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
1852 2190 4.467107 ACCTCGGCCTCCTCCTCC 62.467 72.222 0.00 0.00 0.00 4.30
1853 2191 3.151022 CACCTCGGCCTCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
1854 2192 4.787280 CCACCTCGGCCTCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
2050 2412 2.781174 TCTAAAACTATTCCCCCGGCAT 59.219 45.455 0.00 0.00 0.00 4.40
2051 2413 2.171870 CTCTAAAACTATTCCCCCGGCA 59.828 50.000 0.00 0.00 0.00 5.69
2052 2414 2.172082 ACTCTAAAACTATTCCCCCGGC 59.828 50.000 0.00 0.00 0.00 6.13
2053 2415 4.040095 CCTACTCTAAAACTATTCCCCCGG 59.960 50.000 0.00 0.00 0.00 5.73
2054 2416 4.502777 GCCTACTCTAAAACTATTCCCCCG 60.503 50.000 0.00 0.00 0.00 5.73
2057 2419 5.301298 TCGAGCCTACTCTAAAACTATTCCC 59.699 44.000 0.00 0.00 41.09 3.97
2195 4114 1.958579 TGCAACACTACTACGGACTGT 59.041 47.619 0.00 0.00 0.00 3.55
2196 4115 2.717580 TGCAACACTACTACGGACTG 57.282 50.000 0.00 0.00 0.00 3.51
2198 4117 4.928601 TGATATGCAACACTACTACGGAC 58.071 43.478 0.00 0.00 0.00 4.79
2266 4212 3.944250 ATCCCCTTGGTTGCAGCCG 62.944 63.158 15.43 1.06 0.00 5.52
2273 4219 1.241315 CGTCGCAAATCCCCTTGGTT 61.241 55.000 0.00 0.00 0.00 3.67
2290 4237 1.825474 CCCATCACTCACCTAAGTCGT 59.175 52.381 0.00 0.00 0.00 4.34
2304 4251 2.037641 CTGATTACGCCATCTCCCATCA 59.962 50.000 0.00 0.00 0.00 3.07
2306 4255 1.349026 CCTGATTACGCCATCTCCCAT 59.651 52.381 0.00 0.00 0.00 4.00
2326 4284 2.860628 CGCTAATGTCTCCACGCGC 61.861 63.158 5.73 0.00 34.05 6.86
2373 4367 2.445845 TCGCCCCTCCACCATAGG 60.446 66.667 0.00 0.00 0.00 2.57
2393 4389 3.126000 CCCTCTTCACTTTTTCGCTCATC 59.874 47.826 0.00 0.00 0.00 2.92
2395 4391 2.494059 CCCTCTTCACTTTTTCGCTCA 58.506 47.619 0.00 0.00 0.00 4.26
2401 4397 1.239347 GCTCGCCCTCTTCACTTTTT 58.761 50.000 0.00 0.00 0.00 1.94
2444 4478 4.462394 CGTAGCCATCCACCCATG 57.538 61.111 0.00 0.00 0.00 3.66
2486 4520 6.388619 AAACCCTAACACTAGTCAATCCAT 57.611 37.500 0.00 0.00 0.00 3.41
2518 4552 1.221021 CCCCGCTTCCTAGTTGTCC 59.779 63.158 0.00 0.00 0.00 4.02
2526 4560 1.123928 CTATCTTCACCCCGCTTCCT 58.876 55.000 0.00 0.00 0.00 3.36
2604 4645 2.022764 GCAACAAACCTTTTGCCAGT 57.977 45.000 0.00 0.00 41.95 4.00
2647 4688 0.903942 TGCAATTCAATGGCCTTCCC 59.096 50.000 3.32 0.00 0.00 3.97
2720 4989 4.534897 AGACCTAAGCTTAAACCTAGCCAA 59.465 41.667 7.74 0.00 39.47 4.52
2735 5004 5.104735 ACATCTCCCTTTTGCTAGACCTAAG 60.105 44.000 0.00 0.00 0.00 2.18
2758 5030 4.636206 AGCTTAAATCGGAATCTGGTTCAC 59.364 41.667 2.68 0.00 38.64 3.18
2771 5043 4.258543 TGGGGACAACTTAGCTTAAATCG 58.741 43.478 0.00 0.00 37.44 3.34
2773 5045 5.010282 CACTGGGGACAACTTAGCTTAAAT 58.990 41.667 0.00 0.00 42.06 1.40
2796 5068 3.004524 ACTGTCAGACTTAGAACCACGAC 59.995 47.826 6.91 0.00 0.00 4.34
2797 5069 3.220110 ACTGTCAGACTTAGAACCACGA 58.780 45.455 6.91 0.00 0.00 4.35
2798 5070 3.644884 ACTGTCAGACTTAGAACCACG 57.355 47.619 6.91 0.00 0.00 4.94
2799 5071 5.009811 ACACTACTGTCAGACTTAGAACCAC 59.990 44.000 6.91 0.00 0.00 4.16
2802 5074 6.127952 CCCTACACTACTGTCAGACTTAGAAC 60.128 46.154 6.91 0.00 0.00 3.01
2803 5075 5.944599 CCCTACACTACTGTCAGACTTAGAA 59.055 44.000 6.91 2.57 0.00 2.10
2804 5076 5.498393 CCCTACACTACTGTCAGACTTAGA 58.502 45.833 6.91 0.00 0.00 2.10
2809 5081 2.100989 CCCCCTACACTACTGTCAGAC 58.899 57.143 6.91 0.00 0.00 3.51
2826 5098 3.206185 TCTTACCTCTCCTTAGTACCCCC 59.794 52.174 0.00 0.00 0.00 5.40
2828 5100 5.078949 GGATCTTACCTCTCCTTAGTACCC 58.921 50.000 0.00 0.00 0.00 3.69
2829 5101 5.955944 AGGATCTTACCTCTCCTTAGTACC 58.044 45.833 0.00 0.00 35.90 3.34
2830 5102 6.656270 GCTAGGATCTTACCTCTCCTTAGTAC 59.344 46.154 0.00 0.00 39.99 2.73
2831 5103 6.563379 AGCTAGGATCTTACCTCTCCTTAGTA 59.437 42.308 0.00 0.00 39.99 1.82
2834 5106 5.933846 AGCTAGGATCTTACCTCTCCTTA 57.066 43.478 0.00 0.00 39.99 2.69
2837 5541 4.953579 CCATAGCTAGGATCTTACCTCTCC 59.046 50.000 7.04 0.00 41.00 3.71
2839 5543 5.314841 ACTCCATAGCTAGGATCTTACCTCT 59.685 44.000 7.04 0.00 41.00 3.69
2849 5553 3.637229 GCACAACTACTCCATAGCTAGGA 59.363 47.826 7.04 9.11 33.73 2.94
2852 5556 3.767131 TGTGCACAACTACTCCATAGCTA 59.233 43.478 19.28 0.00 33.73 3.32
2854 5558 2.673368 GTGTGCACAACTACTCCATAGC 59.327 50.000 23.59 0.00 33.73 2.97
2855 5559 3.925379 TGTGTGCACAACTACTCCATAG 58.075 45.455 23.59 0.00 38.56 2.23
2857 5561 2.928801 TGTGTGCACAACTACTCCAT 57.071 45.000 23.59 0.00 38.56 3.41
2858 5562 2.093181 ACTTGTGTGCACAACTACTCCA 60.093 45.455 23.59 10.70 45.42 3.86
2872 5576 4.331717 CCTGAACTCGTAAAACACTTGTGT 59.668 41.667 0.00 0.00 0.00 3.72
2873 5577 4.785341 GCCTGAACTCGTAAAACACTTGTG 60.785 45.833 0.00 0.00 0.00 3.33
2874 5578 3.311596 GCCTGAACTCGTAAAACACTTGT 59.688 43.478 0.00 0.00 0.00 3.16
2875 5579 3.303791 GGCCTGAACTCGTAAAACACTTG 60.304 47.826 0.00 0.00 0.00 3.16
2877 5581 2.490991 GGCCTGAACTCGTAAAACACT 58.509 47.619 0.00 0.00 0.00 3.55
2878 5582 1.534163 GGGCCTGAACTCGTAAAACAC 59.466 52.381 0.84 0.00 0.00 3.32
2879 5583 1.418637 AGGGCCTGAACTCGTAAAACA 59.581 47.619 4.50 0.00 0.00 2.83
2880 5584 2.180432 AGGGCCTGAACTCGTAAAAC 57.820 50.000 4.50 0.00 0.00 2.43
2881 5585 2.370849 AGAAGGGCCTGAACTCGTAAAA 59.629 45.455 6.92 0.00 0.00 1.52
2882 5586 1.975680 AGAAGGGCCTGAACTCGTAAA 59.024 47.619 6.92 0.00 0.00 2.01
2883 5587 1.549170 GAGAAGGGCCTGAACTCGTAA 59.451 52.381 6.92 0.00 0.00 3.18
2884 5588 1.183549 GAGAAGGGCCTGAACTCGTA 58.816 55.000 6.92 0.00 0.00 3.43
2886 5590 1.153745 CGAGAAGGGCCTGAACTCG 60.154 63.158 29.13 29.13 42.77 4.18
2887 5591 1.219393 CCGAGAAGGGCCTGAACTC 59.781 63.158 6.92 15.44 35.97 3.01
2888 5592 0.836400 TTCCGAGAAGGGCCTGAACT 60.836 55.000 6.92 7.41 41.52 3.01
2889 5593 0.391793 CTTCCGAGAAGGGCCTGAAC 60.392 60.000 6.92 1.62 41.52 3.18
2890 5594 0.544357 TCTTCCGAGAAGGGCCTGAA 60.544 55.000 6.92 4.77 41.52 3.02
2891 5595 0.544357 TTCTTCCGAGAAGGGCCTGA 60.544 55.000 6.92 0.00 41.52 3.86
2892 5596 1.983224 TTCTTCCGAGAAGGGCCTG 59.017 57.895 6.92 0.00 41.52 4.85
2900 5604 1.549170 GGGCTGTTACTTCTTCCGAGA 59.451 52.381 0.00 0.00 0.00 4.04
2902 5606 1.344065 TGGGCTGTTACTTCTTCCGA 58.656 50.000 0.00 0.00 0.00 4.55
2903 5607 2.178912 TTGGGCTGTTACTTCTTCCG 57.821 50.000 0.00 0.00 0.00 4.30
2904 5608 3.487372 ACTTTGGGCTGTTACTTCTTCC 58.513 45.455 0.00 0.00 0.00 3.46
2905 5609 4.390264 AGACTTTGGGCTGTTACTTCTTC 58.610 43.478 0.00 0.00 0.00 2.87
2911 5927 1.001633 TCCGAGACTTTGGGCTGTTAC 59.998 52.381 0.00 0.00 0.00 2.50
2912 5928 1.275291 CTCCGAGACTTTGGGCTGTTA 59.725 52.381 0.00 0.00 0.00 2.41
2918 5934 2.269241 GGGCTCCGAGACTTTGGG 59.731 66.667 0.06 0.00 0.00 4.12
2936 5952 1.389609 TAATCCAGTCGACCGCCTCC 61.390 60.000 13.01 0.00 0.00 4.30
2937 5953 0.674534 ATAATCCAGTCGACCGCCTC 59.325 55.000 13.01 0.00 0.00 4.70
2938 5954 1.991121 TATAATCCAGTCGACCGCCT 58.009 50.000 13.01 0.00 0.00 5.52
2939 5955 2.029290 ACATATAATCCAGTCGACCGCC 60.029 50.000 13.01 0.00 0.00 6.13
2940 5956 2.987149 CACATATAATCCAGTCGACCGC 59.013 50.000 13.01 0.00 0.00 5.68
2941 5957 3.981416 CACACATATAATCCAGTCGACCG 59.019 47.826 13.01 0.70 0.00 4.79
2943 5959 6.073327 TCTCACACATATAATCCAGTCGAC 57.927 41.667 7.70 7.70 0.00 4.20
2944 5960 5.828328 ACTCTCACACATATAATCCAGTCGA 59.172 40.000 0.00 0.00 0.00 4.20
2945 5961 6.078202 ACTCTCACACATATAATCCAGTCG 57.922 41.667 0.00 0.00 0.00 4.18
2946 5962 8.414003 TGTAACTCTCACACATATAATCCAGTC 58.586 37.037 0.00 0.00 0.00 3.51
2947 5963 8.306313 TGTAACTCTCACACATATAATCCAGT 57.694 34.615 0.00 0.00 0.00 4.00
2948 5964 7.869937 CCTGTAACTCTCACACATATAATCCAG 59.130 40.741 0.00 0.00 0.00 3.86
2951 5967 7.155328 CCCCTGTAACTCTCACACATATAATC 58.845 42.308 0.00 0.00 0.00 1.75
2952 5968 6.615726 ACCCCTGTAACTCTCACACATATAAT 59.384 38.462 0.00 0.00 0.00 1.28
2953 5969 5.962031 ACCCCTGTAACTCTCACACATATAA 59.038 40.000 0.00 0.00 0.00 0.98
2954 5970 5.362717 CACCCCTGTAACTCTCACACATATA 59.637 44.000 0.00 0.00 0.00 0.86
2957 5973 2.303022 CACCCCTGTAACTCTCACACAT 59.697 50.000 0.00 0.00 0.00 3.21
2958 5974 1.691976 CACCCCTGTAACTCTCACACA 59.308 52.381 0.00 0.00 0.00 3.72
2959 5975 1.608283 GCACCCCTGTAACTCTCACAC 60.608 57.143 0.00 0.00 0.00 3.82
2960 5976 0.685097 GCACCCCTGTAACTCTCACA 59.315 55.000 0.00 0.00 0.00 3.58
2961 5977 0.389948 CGCACCCCTGTAACTCTCAC 60.390 60.000 0.00 0.00 0.00 3.51
2962 5978 0.541063 TCGCACCCCTGTAACTCTCA 60.541 55.000 0.00 0.00 0.00 3.27
2963 5979 0.606604 TTCGCACCCCTGTAACTCTC 59.393 55.000 0.00 0.00 0.00 3.20
2965 5981 0.672711 GGTTCGCACCCCTGTAACTC 60.673 60.000 0.00 0.00 37.03 3.01
2966 5982 1.373812 GGTTCGCACCCCTGTAACT 59.626 57.895 0.00 0.00 37.03 2.24
2967 5983 3.976758 GGTTCGCACCCCTGTAAC 58.023 61.111 0.00 0.00 37.03 2.50
2975 5991 0.391263 CTGGTAGAAGGGTTCGCACC 60.391 60.000 0.00 0.00 43.37 5.01
2976 5992 0.320697 ACTGGTAGAAGGGTTCGCAC 59.679 55.000 0.00 0.00 34.02 5.34
2977 5993 0.320374 CACTGGTAGAAGGGTTCGCA 59.680 55.000 0.00 0.00 34.02 5.10
2978 5994 0.391263 CCACTGGTAGAAGGGTTCGC 60.391 60.000 0.00 0.00 34.02 4.70
2979 5995 1.204941 CTCCACTGGTAGAAGGGTTCG 59.795 57.143 0.00 0.00 34.02 3.95
2980 5996 1.555533 CCTCCACTGGTAGAAGGGTTC 59.444 57.143 0.00 0.00 0.00 3.62
2981 5997 1.657804 CCTCCACTGGTAGAAGGGTT 58.342 55.000 0.00 0.00 0.00 4.11
2982 5998 0.252742 CCCTCCACTGGTAGAAGGGT 60.253 60.000 10.40 0.00 0.00 4.34
2983 5999 0.983378 CCCCTCCACTGGTAGAAGGG 60.983 65.000 11.35 11.35 35.02 3.95
2984 6000 0.983378 CCCCCTCCACTGGTAGAAGG 60.983 65.000 0.00 0.00 0.00 3.46
2985 6001 0.252742 ACCCCCTCCACTGGTAGAAG 60.253 60.000 0.00 0.00 0.00 2.85
2986 6002 0.546747 CACCCCCTCCACTGGTAGAA 60.547 60.000 0.00 0.00 0.00 2.10
2987 6003 1.080354 CACCCCCTCCACTGGTAGA 59.920 63.158 0.00 0.00 0.00 2.59
2988 6004 1.995626 CCACCCCCTCCACTGGTAG 60.996 68.421 0.00 0.00 0.00 3.18
2989 6005 2.124085 CCACCCCCTCCACTGGTA 59.876 66.667 0.00 0.00 0.00 3.25
2992 6008 1.281925 ATAAGCCACCCCCTCCACTG 61.282 60.000 0.00 0.00 0.00 3.66
2993 6009 0.345502 TATAAGCCACCCCCTCCACT 59.654 55.000 0.00 0.00 0.00 4.00
2994 6010 1.446016 ATATAAGCCACCCCCTCCAC 58.554 55.000 0.00 0.00 0.00 4.02
2995 6011 2.457126 TCTATATAAGCCACCCCCTCCA 59.543 50.000 0.00 0.00 0.00 3.86
2996 6012 3.108376 CTCTATATAAGCCACCCCCTCC 58.892 54.545 0.00 0.00 0.00 4.30
2997 6013 3.108376 CCTCTATATAAGCCACCCCCTC 58.892 54.545 0.00 0.00 0.00 4.30
2998 6014 2.733637 TCCTCTATATAAGCCACCCCCT 59.266 50.000 0.00 0.00 0.00 4.79
2999 6015 2.838813 GTCCTCTATATAAGCCACCCCC 59.161 54.545 0.00 0.00 0.00 5.40
3000 6016 2.496470 CGTCCTCTATATAAGCCACCCC 59.504 54.545 0.00 0.00 0.00 4.95
3001 6017 2.094130 GCGTCCTCTATATAAGCCACCC 60.094 54.545 0.00 0.00 0.00 4.61
3002 6018 2.094130 GGCGTCCTCTATATAAGCCACC 60.094 54.545 0.00 0.00 42.37 4.61
3003 6019 2.561419 TGGCGTCCTCTATATAAGCCAC 59.439 50.000 1.80 0.00 46.73 5.01
3005 6021 3.510360 TCTTGGCGTCCTCTATATAAGCC 59.490 47.826 0.00 0.00 43.05 4.35
3006 6022 4.487019 GTCTTGGCGTCCTCTATATAAGC 58.513 47.826 0.00 0.00 0.00 3.09
3007 6023 4.082136 GGGTCTTGGCGTCCTCTATATAAG 60.082 50.000 0.00 0.00 0.00 1.73
3008 6024 3.830755 GGGTCTTGGCGTCCTCTATATAA 59.169 47.826 0.00 0.00 0.00 0.98
3009 6025 3.428532 GGGTCTTGGCGTCCTCTATATA 58.571 50.000 0.00 0.00 0.00 0.86
3010 6026 2.249139 GGGTCTTGGCGTCCTCTATAT 58.751 52.381 0.00 0.00 0.00 0.86
3011 6027 1.700955 GGGTCTTGGCGTCCTCTATA 58.299 55.000 0.00 0.00 0.00 1.31
3012 6028 1.049289 GGGGTCTTGGCGTCCTCTAT 61.049 60.000 0.00 0.00 0.00 1.98
3013 6029 1.684734 GGGGTCTTGGCGTCCTCTA 60.685 63.158 0.00 0.00 0.00 2.43
3014 6030 3.003763 GGGGTCTTGGCGTCCTCT 61.004 66.667 0.00 0.00 0.00 3.69
3015 6031 3.316573 CTGGGGTCTTGGCGTCCTC 62.317 68.421 0.00 0.00 0.00 3.71
3016 6032 3.322466 CTGGGGTCTTGGCGTCCT 61.322 66.667 0.00 0.00 0.00 3.85
3022 6038 4.748144 GGCTGGCTGGGGTCTTGG 62.748 72.222 0.00 0.00 0.00 3.61
3023 6039 4.748144 GGGCTGGCTGGGGTCTTG 62.748 72.222 0.00 0.00 0.00 3.02
3029 6045 4.473520 CTACGTGGGCTGGCTGGG 62.474 72.222 0.00 0.00 0.00 4.45
3034 6050 4.514577 CTCCGCTACGTGGGCTGG 62.515 72.222 0.00 8.78 33.43 4.85
3035 6051 4.514577 CCTCCGCTACGTGGGCTG 62.515 72.222 0.00 0.00 33.43 4.85
3038 6054 1.606885 TTAACCCTCCGCTACGTGGG 61.607 60.000 0.00 0.55 41.80 4.61
3039 6055 0.247185 TTTAACCCTCCGCTACGTGG 59.753 55.000 0.00 0.00 33.99 4.94
3040 6056 1.067354 ACTTTAACCCTCCGCTACGTG 60.067 52.381 0.00 0.00 0.00 4.49
3041 6057 1.260544 ACTTTAACCCTCCGCTACGT 58.739 50.000 0.00 0.00 0.00 3.57
3042 6058 2.164219 TGTACTTTAACCCTCCGCTACG 59.836 50.000 0.00 0.00 0.00 3.51
3043 6059 3.874392 TGTACTTTAACCCTCCGCTAC 57.126 47.619 0.00 0.00 0.00 3.58
3044 6060 6.407299 CCTTAATGTACTTTAACCCTCCGCTA 60.407 42.308 9.28 0.00 0.00 4.26
3045 6061 3.994931 AATGTACTTTAACCCTCCGCT 57.005 42.857 0.00 0.00 0.00 5.52
3046 6062 4.573607 CCTTAATGTACTTTAACCCTCCGC 59.426 45.833 9.28 0.00 0.00 5.54
3047 6063 5.737860 ACCTTAATGTACTTTAACCCTCCG 58.262 41.667 9.28 1.13 0.00 4.63
3048 6064 6.118170 GGACCTTAATGTACTTTAACCCTCC 58.882 44.000 9.28 9.29 0.00 4.30
3049 6065 5.814188 CGGACCTTAATGTACTTTAACCCTC 59.186 44.000 9.28 5.28 0.00 4.30
3050 6066 5.338626 CCGGACCTTAATGTACTTTAACCCT 60.339 44.000 0.00 0.00 0.00 4.34
3051 6067 4.877823 CCGGACCTTAATGTACTTTAACCC 59.122 45.833 0.00 9.66 0.00 4.11
3052 6068 5.352293 CACCGGACCTTAATGTACTTTAACC 59.648 44.000 9.46 8.74 0.00 2.85
3053 6069 5.934043 ACACCGGACCTTAATGTACTTTAAC 59.066 40.000 9.46 2.17 0.00 2.01
3054 6070 6.112927 ACACCGGACCTTAATGTACTTTAA 57.887 37.500 9.46 12.03 0.00 1.52
3055 6071 5.743636 ACACCGGACCTTAATGTACTTTA 57.256 39.130 9.46 0.00 0.00 1.85
3056 6072 4.628963 ACACCGGACCTTAATGTACTTT 57.371 40.909 9.46 0.00 0.00 2.66
3057 6073 4.628963 AACACCGGACCTTAATGTACTT 57.371 40.909 9.46 0.00 0.00 2.24
3058 6074 4.774200 AGTAACACCGGACCTTAATGTACT 59.226 41.667 9.46 2.31 0.00 2.73
3059 6075 4.866486 CAGTAACACCGGACCTTAATGTAC 59.134 45.833 9.46 0.00 0.00 2.90
3060 6076 4.081531 CCAGTAACACCGGACCTTAATGTA 60.082 45.833 9.46 0.00 0.00 2.29
3061 6077 3.307199 CCAGTAACACCGGACCTTAATGT 60.307 47.826 9.46 0.00 0.00 2.71
3062 6078 3.267483 CCAGTAACACCGGACCTTAATG 58.733 50.000 9.46 9.49 0.00 1.90
3063 6079 2.908351 ACCAGTAACACCGGACCTTAAT 59.092 45.455 9.46 0.00 0.00 1.40
3064 6080 2.328319 ACCAGTAACACCGGACCTTAA 58.672 47.619 9.46 0.00 0.00 1.85
3065 6081 2.014010 ACCAGTAACACCGGACCTTA 57.986 50.000 9.46 0.00 0.00 2.69
3066 6082 2.014010 TACCAGTAACACCGGACCTT 57.986 50.000 9.46 0.00 0.00 3.50
3067 6083 1.620323 GTTACCAGTAACACCGGACCT 59.380 52.381 9.46 0.00 43.55 3.85
3068 6084 1.669795 CGTTACCAGTAACACCGGACC 60.670 57.143 9.46 0.00 44.12 4.46
3069 6085 1.701704 CGTTACCAGTAACACCGGAC 58.298 55.000 9.46 0.00 44.12 4.79
3070 6086 0.038343 GCGTTACCAGTAACACCGGA 60.038 55.000 9.46 0.00 44.12 5.14
3071 6087 1.015607 GGCGTTACCAGTAACACCGG 61.016 60.000 18.14 0.00 44.12 5.28
3072 6088 2.448477 GGCGTTACCAGTAACACCG 58.552 57.895 18.14 7.78 44.12 4.94
3073 6089 2.174363 AAGGCGTTACCAGTAACACC 57.826 50.000 16.50 16.50 44.45 4.16
3074 6090 3.652274 TGTAAGGCGTTACCAGTAACAC 58.348 45.455 22.74 10.07 44.12 3.32
3075 6091 4.540359 ATGTAAGGCGTTACCAGTAACA 57.460 40.909 22.74 8.64 44.12 2.41
3076 6092 6.591448 ACTTTATGTAAGGCGTTACCAGTAAC 59.409 38.462 22.74 10.09 43.14 2.50
3077 6093 6.591062 CACTTTATGTAAGGCGTTACCAGTAA 59.409 38.462 22.74 16.35 43.14 2.24
3078 6094 6.101332 CACTTTATGTAAGGCGTTACCAGTA 58.899 40.000 22.74 12.37 43.14 2.74
3079 6095 4.933400 CACTTTATGTAAGGCGTTACCAGT 59.067 41.667 22.74 16.50 43.14 4.00
3080 6096 4.933400 ACACTTTATGTAAGGCGTTACCAG 59.067 41.667 22.74 15.99 40.88 4.00
3081 6097 4.897140 ACACTTTATGTAAGGCGTTACCA 58.103 39.130 22.74 13.24 40.88 3.25
3082 6098 4.931002 TGACACTTTATGTAAGGCGTTACC 59.069 41.667 22.74 8.73 43.56 2.85
3083 6099 5.445540 GCTGACACTTTATGTAAGGCGTTAC 60.446 44.000 19.82 19.82 43.56 2.50
3084 6100 4.628333 GCTGACACTTTATGTAAGGCGTTA 59.372 41.667 0.00 0.00 43.56 3.18
3085 6101 3.435671 GCTGACACTTTATGTAAGGCGTT 59.564 43.478 0.00 0.00 43.56 4.84
3086 6102 3.000727 GCTGACACTTTATGTAAGGCGT 58.999 45.455 0.00 0.00 43.56 5.68
3087 6103 3.000041 TGCTGACACTTTATGTAAGGCG 59.000 45.455 0.00 0.00 43.56 5.52
3088 6104 4.635765 TCATGCTGACACTTTATGTAAGGC 59.364 41.667 0.00 0.00 43.56 4.35
3089 6105 6.111768 GTCATGCTGACACTTTATGTAAGG 57.888 41.667 10.30 0.00 46.22 2.69
3101 6117 7.093509 TAAGTAGTCTTTATGGTCATGCTGACA 60.094 37.037 15.22 5.33 40.55 3.58
3102 6118 5.665459 AGTAGTCTTTATGGTCATGCTGAC 58.335 41.667 7.52 7.52 46.23 3.51
3103 6119 5.939764 AGTAGTCTTTATGGTCATGCTGA 57.060 39.130 0.00 0.00 0.00 4.26
3104 6120 8.668510 ATTAAGTAGTCTTTATGGTCATGCTG 57.331 34.615 0.00 0.00 35.36 4.41
3112 6128 9.245962 CGGTCTGTAATTAAGTAGTCTTTATGG 57.754 37.037 0.00 0.00 35.36 2.74
3113 6129 9.798994 ACGGTCTGTAATTAAGTAGTCTTTATG 57.201 33.333 0.00 0.00 35.36 1.90
3116 6132 8.985805 CAAACGGTCTGTAATTAAGTAGTCTTT 58.014 33.333 0.00 0.00 35.36 2.52
3117 6133 7.601508 CCAAACGGTCTGTAATTAAGTAGTCTT 59.398 37.037 0.00 0.00 37.65 3.01
3118 6134 7.039504 TCCAAACGGTCTGTAATTAAGTAGTCT 60.040 37.037 0.00 0.00 0.00 3.24
3119 6135 7.092716 TCCAAACGGTCTGTAATTAAGTAGTC 58.907 38.462 0.00 0.00 0.00 2.59
3120 6136 6.996509 TCCAAACGGTCTGTAATTAAGTAGT 58.003 36.000 0.00 0.00 0.00 2.73
3121 6137 9.028185 GTATCCAAACGGTCTGTAATTAAGTAG 57.972 37.037 0.00 0.00 0.00 2.57
3122 6138 8.530311 TGTATCCAAACGGTCTGTAATTAAGTA 58.470 33.333 0.00 0.00 0.00 2.24
3123 6139 7.388437 TGTATCCAAACGGTCTGTAATTAAGT 58.612 34.615 0.00 0.00 0.00 2.24
3124 6140 7.762615 TCTGTATCCAAACGGTCTGTAATTAAG 59.237 37.037 0.00 0.00 0.00 1.85
3125 6141 7.613585 TCTGTATCCAAACGGTCTGTAATTAA 58.386 34.615 0.00 0.00 0.00 1.40
3126 6142 7.093640 ACTCTGTATCCAAACGGTCTGTAATTA 60.094 37.037 0.00 0.00 0.00 1.40
3127 6143 6.045072 TCTGTATCCAAACGGTCTGTAATT 57.955 37.500 0.00 0.00 0.00 1.40
3128 6144 5.187186 ACTCTGTATCCAAACGGTCTGTAAT 59.813 40.000 0.00 0.00 0.00 1.89
3129 6145 4.525487 ACTCTGTATCCAAACGGTCTGTAA 59.475 41.667 0.00 0.00 0.00 2.41
3130 6146 4.084287 ACTCTGTATCCAAACGGTCTGTA 58.916 43.478 0.00 0.00 0.00 2.74
3131 6147 2.897969 ACTCTGTATCCAAACGGTCTGT 59.102 45.455 0.00 0.00 0.00 3.41
3132 6148 3.594603 ACTCTGTATCCAAACGGTCTG 57.405 47.619 0.00 0.00 0.00 3.51
3133 6149 4.597004 TCTACTCTGTATCCAAACGGTCT 58.403 43.478 0.00 0.00 0.00 3.85
3134 6150 4.978083 TCTACTCTGTATCCAAACGGTC 57.022 45.455 0.00 0.00 0.00 4.79
3135 6151 5.202004 AGATCTACTCTGTATCCAAACGGT 58.798 41.667 0.00 0.00 31.12 4.83
3136 6152 5.776173 AGATCTACTCTGTATCCAAACGG 57.224 43.478 0.00 0.00 31.12 4.44
3137 6153 6.796426 TCAAGATCTACTCTGTATCCAAACG 58.204 40.000 0.00 0.00 33.29 3.60
3138 6154 8.254508 AGTTCAAGATCTACTCTGTATCCAAAC 58.745 37.037 0.00 0.00 33.29 2.93
3139 6155 8.367660 AGTTCAAGATCTACTCTGTATCCAAA 57.632 34.615 0.00 0.00 33.29 3.28
3140 6156 7.068839 GGAGTTCAAGATCTACTCTGTATCCAA 59.931 40.741 19.01 0.00 38.62 3.53
3141 6157 6.547880 GGAGTTCAAGATCTACTCTGTATCCA 59.452 42.308 19.01 0.00 38.62 3.41
3142 6158 6.775629 AGGAGTTCAAGATCTACTCTGTATCC 59.224 42.308 19.01 11.82 38.62 2.59
3143 6159 7.255451 CCAGGAGTTCAAGATCTACTCTGTATC 60.255 44.444 19.01 6.64 38.62 2.24
3144 6160 6.549364 CCAGGAGTTCAAGATCTACTCTGTAT 59.451 42.308 19.01 5.48 38.62 2.29
3145 6161 5.888724 CCAGGAGTTCAAGATCTACTCTGTA 59.111 44.000 19.01 0.00 38.62 2.74
3146 6162 4.709397 CCAGGAGTTCAAGATCTACTCTGT 59.291 45.833 19.01 8.24 38.62 3.41
3147 6163 4.709397 ACCAGGAGTTCAAGATCTACTCTG 59.291 45.833 19.01 15.20 38.62 3.35
3148 6164 4.709397 CACCAGGAGTTCAAGATCTACTCT 59.291 45.833 19.01 6.69 38.62 3.24
3149 6165 4.142049 CCACCAGGAGTTCAAGATCTACTC 60.142 50.000 13.61 13.61 38.02 2.59
3150 6166 3.772025 CCACCAGGAGTTCAAGATCTACT 59.228 47.826 0.00 0.00 36.89 2.57
3151 6167 3.515901 ACCACCAGGAGTTCAAGATCTAC 59.484 47.826 0.00 0.00 38.69 2.59
3152 6168 3.769844 GACCACCAGGAGTTCAAGATCTA 59.230 47.826 0.00 0.00 38.69 1.98
3153 6169 2.569404 GACCACCAGGAGTTCAAGATCT 59.431 50.000 0.00 0.00 38.69 2.75
3154 6170 2.675317 CGACCACCAGGAGTTCAAGATC 60.675 54.545 0.00 0.00 38.69 2.75
3155 6171 1.276421 CGACCACCAGGAGTTCAAGAT 59.724 52.381 0.00 0.00 38.69 2.40
3156 6172 0.679505 CGACCACCAGGAGTTCAAGA 59.320 55.000 0.00 0.00 38.69 3.02
3157 6173 0.679505 TCGACCACCAGGAGTTCAAG 59.320 55.000 0.00 0.00 38.69 3.02
3158 6174 0.679505 CTCGACCACCAGGAGTTCAA 59.320 55.000 0.00 0.00 38.69 2.69
3159 6175 0.469331 ACTCGACCACCAGGAGTTCA 60.469 55.000 0.00 0.00 37.76 3.18
3160 6176 0.038159 CACTCGACCACCAGGAGTTC 60.038 60.000 0.00 0.00 38.90 3.01
3161 6177 0.469331 TCACTCGACCACCAGGAGTT 60.469 55.000 0.00 0.00 38.90 3.01
3162 6178 0.896019 CTCACTCGACCACCAGGAGT 60.896 60.000 0.00 0.00 41.47 3.85
3163 6179 0.896019 ACTCACTCGACCACCAGGAG 60.896 60.000 0.00 0.00 38.69 3.69
3164 6180 0.894184 GACTCACTCGACCACCAGGA 60.894 60.000 0.00 0.00 38.69 3.86
3165 6181 0.896019 AGACTCACTCGACCACCAGG 60.896 60.000 0.00 0.00 42.21 4.45
3166 6182 0.962489 AAGACTCACTCGACCACCAG 59.038 55.000 0.00 0.00 0.00 4.00
3167 6183 0.959553 GAAGACTCACTCGACCACCA 59.040 55.000 0.00 0.00 0.00 4.17
3168 6184 0.959553 TGAAGACTCACTCGACCACC 59.040 55.000 0.00 0.00 0.00 4.61
3169 6185 2.600731 CATGAAGACTCACTCGACCAC 58.399 52.381 0.00 0.00 33.30 4.16
3170 6186 1.546029 CCATGAAGACTCACTCGACCA 59.454 52.381 0.00 0.00 33.30 4.02
3171 6187 1.546476 ACCATGAAGACTCACTCGACC 59.454 52.381 0.00 0.00 33.30 4.79
3172 6188 2.729467 CGACCATGAAGACTCACTCGAC 60.729 54.545 0.00 0.00 33.30 4.20
3173 6189 1.468914 CGACCATGAAGACTCACTCGA 59.531 52.381 0.00 0.00 33.30 4.04
3174 6190 1.468914 TCGACCATGAAGACTCACTCG 59.531 52.381 0.00 0.00 33.30 4.18
3175 6191 2.490115 ACTCGACCATGAAGACTCACTC 59.510 50.000 0.00 0.00 33.30 3.51
3176 6192 2.230025 CACTCGACCATGAAGACTCACT 59.770 50.000 0.00 0.00 33.30 3.41
3177 6193 2.029828 ACACTCGACCATGAAGACTCAC 60.030 50.000 0.00 0.00 33.30 3.51
3178 6194 2.229062 GACACTCGACCATGAAGACTCA 59.771 50.000 0.00 0.00 35.56 3.41
3179 6195 2.490115 AGACACTCGACCATGAAGACTC 59.510 50.000 0.00 0.00 0.00 3.36
3180 6196 2.520069 AGACACTCGACCATGAAGACT 58.480 47.619 0.00 0.00 0.00 3.24
3181 6197 3.246619 GAAGACACTCGACCATGAAGAC 58.753 50.000 0.00 0.00 0.00 3.01
3182 6198 2.890945 TGAAGACACTCGACCATGAAGA 59.109 45.455 0.00 0.00 0.00 2.87
3183 6199 3.303881 TGAAGACACTCGACCATGAAG 57.696 47.619 0.00 0.00 0.00 3.02
3184 6200 3.006859 ACATGAAGACACTCGACCATGAA 59.993 43.478 0.00 0.00 36.29 2.57
3185 6201 2.562738 ACATGAAGACACTCGACCATGA 59.437 45.455 0.00 0.00 36.29 3.07
3186 6202 2.964740 ACATGAAGACACTCGACCATG 58.035 47.619 0.00 0.00 37.84 3.66
3187 6203 3.589988 GAACATGAAGACACTCGACCAT 58.410 45.455 0.00 0.00 0.00 3.55
3188 6204 2.607038 CGAACATGAAGACACTCGACCA 60.607 50.000 0.00 0.00 31.83 4.02
3189 6205 1.986378 CGAACATGAAGACACTCGACC 59.014 52.381 0.00 0.00 31.83 4.79
3190 6206 2.657372 GACGAACATGAAGACACTCGAC 59.343 50.000 0.00 0.00 33.33 4.20
3191 6207 2.664698 CGACGAACATGAAGACACTCGA 60.665 50.000 0.00 0.00 33.33 4.04
3192 6208 1.644295 CGACGAACATGAAGACACTCG 59.356 52.381 0.00 0.00 34.41 4.18
3193 6209 2.911723 CTCGACGAACATGAAGACACTC 59.088 50.000 0.00 0.00 0.00 3.51
3194 6210 2.293677 ACTCGACGAACATGAAGACACT 59.706 45.455 0.00 0.00 0.00 3.55
3195 6211 2.405357 CACTCGACGAACATGAAGACAC 59.595 50.000 0.00 0.00 0.00 3.67
3196 6212 2.034179 ACACTCGACGAACATGAAGACA 59.966 45.455 0.00 0.00 0.00 3.41
3197 6213 2.657372 GACACTCGACGAACATGAAGAC 59.343 50.000 0.00 0.00 0.00 3.01
3198 6214 2.552743 AGACACTCGACGAACATGAAGA 59.447 45.455 0.00 0.00 0.00 2.87
3199 6215 2.935042 AGACACTCGACGAACATGAAG 58.065 47.619 0.00 0.00 0.00 3.02
3200 6216 3.004419 AGAAGACACTCGACGAACATGAA 59.996 43.478 0.00 0.00 0.00 2.57
3201 6217 2.552743 AGAAGACACTCGACGAACATGA 59.447 45.455 0.00 0.00 0.00 3.07
3202 6218 2.935042 AGAAGACACTCGACGAACATG 58.065 47.619 0.00 0.37 0.00 3.21
3203 6219 3.752222 ACTAGAAGACACTCGACGAACAT 59.248 43.478 0.00 0.00 0.00 2.71
3204 6220 3.136763 ACTAGAAGACACTCGACGAACA 58.863 45.455 0.00 0.00 0.00 3.18
3205 6221 3.424697 GGACTAGAAGACACTCGACGAAC 60.425 52.174 0.00 0.00 0.00 3.95
3206 6222 2.740981 GGACTAGAAGACACTCGACGAA 59.259 50.000 0.00 0.00 0.00 3.85
3207 6223 2.344950 GGACTAGAAGACACTCGACGA 58.655 52.381 0.00 0.00 0.00 4.20
3208 6224 1.060842 CGGACTAGAAGACACTCGACG 59.939 57.143 0.00 0.00 0.00 5.12
3209 6225 2.075338 ACGGACTAGAAGACACTCGAC 58.925 52.381 0.00 0.00 0.00 4.20
3210 6226 2.469274 ACGGACTAGAAGACACTCGA 57.531 50.000 0.00 0.00 0.00 4.04
3211 6227 2.483106 TCAACGGACTAGAAGACACTCG 59.517 50.000 0.00 0.00 0.00 4.18
3212 6228 3.502979 ACTCAACGGACTAGAAGACACTC 59.497 47.826 0.00 0.00 0.00 3.51
3213 6229 3.253677 CACTCAACGGACTAGAAGACACT 59.746 47.826 0.00 0.00 0.00 3.55
3214 6230 3.566523 CACTCAACGGACTAGAAGACAC 58.433 50.000 0.00 0.00 0.00 3.67
3215 6231 3.917329 CACTCAACGGACTAGAAGACA 57.083 47.619 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.