Multiple sequence alignment - TraesCS4B01G019200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G019200 chr4B 100.000 3136 0 0 1 3136 13996427 13993292 0.000000e+00 5792.0
1 TraesCS4B01G019200 chr4B 93.103 58 4 0 2653 2710 574727442 574727385 5.570000e-13 86.1
2 TraesCS4B01G019200 chr4B 92.857 56 4 0 2655 2710 540035881 540035826 7.210000e-12 82.4
3 TraesCS4B01G019200 chr4D 89.437 2717 101 55 1 2661 7734818 7737404 0.000000e+00 3256.0
4 TraesCS4B01G019200 chr4D 97.297 37 1 0 3096 3132 7737593 7737629 2.610000e-06 63.9
5 TraesCS4B01G019200 chr4A 87.736 2169 108 52 522 2634 595876606 595874540 0.000000e+00 2386.0
6 TraesCS4B01G019200 chr4A 92.718 412 18 3 1 412 595877605 595877206 4.510000e-163 584.0
7 TraesCS4B01G019200 chr4A 97.143 35 0 1 3024 3058 595874500 595874467 1.210000e-04 58.4
8 TraesCS4B01G019200 chr6B 92.857 56 4 0 2655 2710 524838037 524837982 7.210000e-12 82.4
9 TraesCS4B01G019200 chr6B 100.000 29 0 0 2702 2730 601585059 601585087 2.000000e-03 54.7
10 TraesCS4B01G019200 chr6B 100.000 29 0 0 2702 2730 601587481 601587509 2.000000e-03 54.7
11 TraesCS4B01G019200 chr5A 91.525 59 5 0 2652 2710 479231752 479231810 7.210000e-12 82.4
12 TraesCS4B01G019200 chr5A 84.211 76 7 4 2664 2734 562406460 562406385 5.610000e-08 69.4
13 TraesCS4B01G019200 chr3B 92.857 56 4 0 2655 2710 173656548 173656493 7.210000e-12 82.4
14 TraesCS4B01G019200 chr3B 92.982 57 2 2 2655 2710 465064923 465064868 7.210000e-12 82.4
15 TraesCS4B01G019200 chr2B 92.857 56 4 0 2655 2710 16595617 16595672 7.210000e-12 82.4
16 TraesCS4B01G019200 chr2A 91.667 60 4 1 2652 2710 669632351 669632410 7.210000e-12 82.4
17 TraesCS4B01G019200 chr7B 100.000 32 0 0 2700 2731 191178979 191179010 3.380000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G019200 chr4B 13993292 13996427 3135 True 5792.000000 5792 100.000000 1 3136 1 chr4B.!!$R1 3135
1 TraesCS4B01G019200 chr4D 7734818 7737629 2811 False 1659.950000 3256 93.367000 1 3132 2 chr4D.!!$F1 3131
2 TraesCS4B01G019200 chr4A 595874467 595877605 3138 True 1009.466667 2386 92.532333 1 3058 3 chr4A.!!$R1 3057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 1432 0.036388 TCCTTTGTGATCTCACCGGC 60.036 55.0 0.0 0.0 45.88 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2728 3336 0.383949 GACTGTTTCGGCCAAGCAAA 59.616 50.0 2.24 0.0 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 151 3.795041 CTAGCTGGCTGGCTGGCT 61.795 66.667 18.27 20.56 43.01 4.75
134 152 4.105553 TAGCTGGCTGGCTGGCTG 62.106 66.667 23.57 17.95 43.01 4.85
162 180 0.323725 ACCCAAGCCGCTCATTGATT 60.324 50.000 0.00 0.00 0.00 2.57
169 187 2.681848 AGCCGCTCATTGATTCTTTCTG 59.318 45.455 0.00 0.00 0.00 3.02
204 222 0.464735 GCCACCACACTACACCACAA 60.465 55.000 0.00 0.00 0.00 3.33
248 266 2.609459 CTGATCAGCCCGTTGTACATTC 59.391 50.000 10.38 0.00 0.00 2.67
319 337 3.129287 CACATTACCAAAGAGATGCCACC 59.871 47.826 0.00 0.00 0.00 4.61
320 338 3.010584 ACATTACCAAAGAGATGCCACCT 59.989 43.478 0.00 0.00 0.00 4.00
321 339 3.350219 TTACCAAAGAGATGCCACCTC 57.650 47.619 0.00 0.00 0.00 3.85
322 340 0.329596 ACCAAAGAGATGCCACCTCC 59.670 55.000 0.00 0.00 0.00 4.30
333 351 3.627395 TGCCACCTCCACTTATTACTG 57.373 47.619 0.00 0.00 0.00 2.74
334 352 3.178046 TGCCACCTCCACTTATTACTGA 58.822 45.455 0.00 0.00 0.00 3.41
335 353 3.197766 TGCCACCTCCACTTATTACTGAG 59.802 47.826 0.00 0.00 0.00 3.35
408 440 1.227853 AAACCACTCCACTGCCGTC 60.228 57.895 0.00 0.00 0.00 4.79
510 683 1.209128 GTGGAGGTCGATAATGCACG 58.791 55.000 0.00 0.00 0.00 5.34
625 1140 2.340078 GCGCCAGTGAGTGAGTGA 59.660 61.111 0.00 0.00 0.00 3.41
626 1141 1.735920 GCGCCAGTGAGTGAGTGAG 60.736 63.158 0.00 0.00 0.00 3.51
627 1142 1.662608 CGCCAGTGAGTGAGTGAGT 59.337 57.895 0.00 0.00 0.00 3.41
628 1143 0.665670 CGCCAGTGAGTGAGTGAGTG 60.666 60.000 0.00 0.00 0.00 3.51
629 1144 0.676184 GCCAGTGAGTGAGTGAGTGA 59.324 55.000 0.00 0.00 0.00 3.41
630 1145 1.336702 GCCAGTGAGTGAGTGAGTGAG 60.337 57.143 0.00 0.00 0.00 3.51
631 1146 1.959985 CCAGTGAGTGAGTGAGTGAGT 59.040 52.381 0.00 0.00 0.00 3.41
632 1147 2.288091 CCAGTGAGTGAGTGAGTGAGTG 60.288 54.545 0.00 0.00 0.00 3.51
633 1148 2.620585 CAGTGAGTGAGTGAGTGAGTGA 59.379 50.000 0.00 0.00 0.00 3.41
634 1149 2.884012 AGTGAGTGAGTGAGTGAGTGAG 59.116 50.000 0.00 0.00 0.00 3.51
635 1150 2.621055 GTGAGTGAGTGAGTGAGTGAGT 59.379 50.000 0.00 0.00 0.00 3.41
636 1151 2.620585 TGAGTGAGTGAGTGAGTGAGTG 59.379 50.000 0.00 0.00 0.00 3.51
637 1152 2.881513 GAGTGAGTGAGTGAGTGAGTGA 59.118 50.000 0.00 0.00 0.00 3.41
638 1153 2.884012 AGTGAGTGAGTGAGTGAGTGAG 59.116 50.000 0.00 0.00 0.00 3.51
639 1154 2.621055 GTGAGTGAGTGAGTGAGTGAGT 59.379 50.000 0.00 0.00 0.00 3.41
640 1155 2.620585 TGAGTGAGTGAGTGAGTGAGTG 59.379 50.000 0.00 0.00 0.00 3.51
664 1179 2.167693 AGGTGATGAAAAGGCATGCATG 59.832 45.455 22.70 22.70 0.00 4.06
691 1206 0.250901 AGCCAAACGGATGTGAGCTT 60.251 50.000 0.00 0.00 0.00 3.74
738 1263 4.937431 GATGCCGGCCAGCCCTAC 62.937 72.222 26.77 2.23 0.00 3.18
741 1266 4.937431 GCCGGCCAGCCCTACATC 62.937 72.222 18.11 0.00 0.00 3.06
742 1267 3.164269 CCGGCCAGCCCTACATCT 61.164 66.667 2.24 0.00 0.00 2.90
743 1268 1.837051 CCGGCCAGCCCTACATCTA 60.837 63.158 2.24 0.00 0.00 1.98
744 1269 1.367840 CGGCCAGCCCTACATCTAC 59.632 63.158 2.24 0.00 0.00 2.59
745 1270 1.399744 CGGCCAGCCCTACATCTACA 61.400 60.000 2.24 0.00 0.00 2.74
746 1271 1.059913 GGCCAGCCCTACATCTACAT 58.940 55.000 0.00 0.00 0.00 2.29
747 1272 1.002544 GGCCAGCCCTACATCTACATC 59.997 57.143 0.00 0.00 0.00 3.06
748 1273 1.974236 GCCAGCCCTACATCTACATCT 59.026 52.381 0.00 0.00 0.00 2.90
749 1274 3.165875 GCCAGCCCTACATCTACATCTA 58.834 50.000 0.00 0.00 0.00 1.98
750 1275 3.056465 GCCAGCCCTACATCTACATCTAC 60.056 52.174 0.00 0.00 0.00 2.59
751 1276 4.152647 CCAGCCCTACATCTACATCTACA 58.847 47.826 0.00 0.00 0.00 2.74
752 1277 4.774726 CCAGCCCTACATCTACATCTACAT 59.225 45.833 0.00 0.00 0.00 2.29
753 1278 5.337089 CCAGCCCTACATCTACATCTACATG 60.337 48.000 0.00 0.00 35.92 3.21
771 1300 3.572632 ATGCATGCATGAGGTAGTTCT 57.427 42.857 31.74 4.10 35.03 3.01
772 1301 4.694760 ATGCATGCATGAGGTAGTTCTA 57.305 40.909 31.74 0.00 35.03 2.10
773 1302 4.063998 TGCATGCATGAGGTAGTTCTAG 57.936 45.455 30.64 0.00 0.00 2.43
774 1303 3.452264 TGCATGCATGAGGTAGTTCTAGT 59.548 43.478 30.64 0.00 0.00 2.57
775 1304 4.080919 TGCATGCATGAGGTAGTTCTAGTT 60.081 41.667 30.64 0.00 0.00 2.24
776 1305 5.128663 TGCATGCATGAGGTAGTTCTAGTTA 59.871 40.000 30.64 0.00 0.00 2.24
777 1306 5.463724 GCATGCATGAGGTAGTTCTAGTTAC 59.536 44.000 30.64 2.07 0.00 2.50
778 1307 6.684111 GCATGCATGAGGTAGTTCTAGTTACT 60.684 42.308 30.64 5.76 0.00 2.24
779 1308 7.470147 GCATGCATGAGGTAGTTCTAGTTACTA 60.470 40.741 30.64 0.00 0.00 1.82
780 1309 7.569639 TGCATGAGGTAGTTCTAGTTACTAG 57.430 40.000 12.85 12.85 35.57 2.57
781 1310 6.546403 TGCATGAGGTAGTTCTAGTTACTAGG 59.454 42.308 18.08 1.70 35.03 3.02
782 1311 6.016108 GCATGAGGTAGTTCTAGTTACTAGGG 60.016 46.154 18.08 0.00 35.03 3.53
783 1312 6.898171 TGAGGTAGTTCTAGTTACTAGGGA 57.102 41.667 18.08 6.03 35.03 4.20
784 1313 6.897986 TGAGGTAGTTCTAGTTACTAGGGAG 58.102 44.000 18.08 0.00 35.03 4.30
785 1314 6.126536 TGAGGTAGTTCTAGTTACTAGGGAGG 60.127 46.154 18.08 0.00 35.03 4.30
786 1315 5.134169 AGGTAGTTCTAGTTACTAGGGAGGG 59.866 48.000 18.08 0.00 35.03 4.30
820 1349 1.348008 TGCCTCCATGGATCCCACTC 61.348 60.000 16.63 0.36 35.80 3.51
867 1396 5.414454 AGCTGACTGATAGTATGTAGCTAGC 59.586 44.000 6.62 6.62 38.38 3.42
868 1397 5.414454 GCTGACTGATAGTATGTAGCTAGCT 59.586 44.000 23.12 23.12 0.00 3.32
869 1398 6.403200 GCTGACTGATAGTATGTAGCTAGCTC 60.403 46.154 23.26 13.51 0.00 4.09
870 1399 5.941058 TGACTGATAGTATGTAGCTAGCTCC 59.059 44.000 23.26 11.15 0.00 4.70
871 1400 5.882040 ACTGATAGTATGTAGCTAGCTCCA 58.118 41.667 23.26 17.75 0.00 3.86
902 1431 1.550524 TCTCCTTTGTGATCTCACCGG 59.449 52.381 0.00 0.00 45.88 5.28
903 1432 0.036388 TCCTTTGTGATCTCACCGGC 60.036 55.000 0.00 0.00 45.88 6.13
904 1433 1.026718 CCTTTGTGATCTCACCGGCC 61.027 60.000 0.00 0.00 45.88 6.13
905 1434 1.361668 CTTTGTGATCTCACCGGCCG 61.362 60.000 21.04 21.04 45.88 6.13
946 1475 3.003173 CTCCCGAGCCCTGACCAA 61.003 66.667 0.00 0.00 0.00 3.67
947 1476 2.528127 TCCCGAGCCCTGACCAAA 60.528 61.111 0.00 0.00 0.00 3.28
948 1477 2.045926 CCCGAGCCCTGACCAAAG 60.046 66.667 0.00 0.00 0.00 2.77
949 1478 2.750350 CCGAGCCCTGACCAAAGT 59.250 61.111 0.00 0.00 0.00 2.66
950 1479 1.672356 CCGAGCCCTGACCAAAGTG 60.672 63.158 0.00 0.00 0.00 3.16
951 1480 1.371183 CGAGCCCTGACCAAAGTGA 59.629 57.895 0.00 0.00 0.00 3.41
952 1481 0.951040 CGAGCCCTGACCAAAGTGAC 60.951 60.000 0.00 0.00 0.00 3.67
953 1482 0.606673 GAGCCCTGACCAAAGTGACC 60.607 60.000 0.00 0.00 0.00 4.02
954 1483 1.150536 GCCCTGACCAAAGTGACCA 59.849 57.895 0.00 0.00 0.00 4.02
955 1484 0.890996 GCCCTGACCAAAGTGACCAG 60.891 60.000 0.00 0.00 0.00 4.00
956 1485 0.474184 CCCTGACCAAAGTGACCAGT 59.526 55.000 0.00 0.00 0.00 4.00
992 1521 1.071605 GCAGTACGCCTTGACTCTTG 58.928 55.000 0.00 0.00 32.94 3.02
1005 1534 2.306805 TGACTCTTGTTGAGCCATGGAT 59.693 45.455 18.40 10.08 46.41 3.41
1006 1535 2.681848 GACTCTTGTTGAGCCATGGATG 59.318 50.000 18.40 0.00 46.41 3.51
1153 1697 2.281761 CCAAGAAGCGGGTGCACT 60.282 61.111 17.98 0.00 46.23 4.40
1154 1698 2.328099 CCAAGAAGCGGGTGCACTC 61.328 63.158 17.98 12.77 46.23 3.51
1421 1965 1.230324 GAGATTTACGAGGCCATGGC 58.770 55.000 29.47 29.47 41.06 4.40
1561 2108 2.529389 AAGTCCAGCCCCGACCTT 60.529 61.111 0.00 0.00 0.00 3.50
1580 2127 2.238942 TTAGGTACGCCTCATGCATG 57.761 50.000 21.07 21.07 45.64 4.06
1606 2153 2.556287 GTCTCTTTGGCCGTTGCG 59.444 61.111 0.00 0.00 38.85 4.85
1609 2156 1.082104 CTCTTTGGCCGTTGCGTTC 60.082 57.895 0.00 0.00 38.85 3.95
1620 2167 1.698165 GTTGCGTTCTGATCACGAGA 58.302 50.000 8.26 0.00 40.20 4.04
1633 2192 0.796312 CACGAGATTTTGGGTCACCG 59.204 55.000 0.00 0.00 40.75 4.94
1661 2220 5.106277 CGAGTTCTTAGTACTGATGGACACA 60.106 44.000 5.39 0.00 0.00 3.72
1662 2221 6.404844 CGAGTTCTTAGTACTGATGGACACAT 60.405 42.308 5.39 0.00 40.85 3.21
1663 2222 6.634805 AGTTCTTAGTACTGATGGACACATG 58.365 40.000 5.39 0.00 37.47 3.21
1664 2223 5.011090 TCTTAGTACTGATGGACACATGC 57.989 43.478 5.39 0.00 37.47 4.06
1665 2224 4.466015 TCTTAGTACTGATGGACACATGCA 59.534 41.667 5.39 0.00 37.47 3.96
1666 2225 3.920231 AGTACTGATGGACACATGCAT 57.080 42.857 0.00 0.00 40.05 3.96
1667 2226 3.538591 AGTACTGATGGACACATGCATG 58.461 45.455 25.09 25.09 36.94 4.06
1668 2227 1.758936 ACTGATGGACACATGCATGG 58.241 50.000 29.41 20.05 36.94 3.66
1669 2228 1.005097 ACTGATGGACACATGCATGGT 59.995 47.619 29.41 22.90 36.94 3.55
1676 2235 0.033781 ACACATGCATGGTTGGTTGC 59.966 50.000 29.41 0.00 39.33 4.17
1698 2257 4.322650 GCTTGGTTTCTTTCATGGCCAATA 60.323 41.667 10.96 0.00 35.74 1.90
1722 2284 1.949465 AGACCAAGAAGAAACGCGTT 58.051 45.000 20.79 20.79 0.00 4.84
1871 2433 2.043450 AGGGAGGTCAGCTCCGAG 60.043 66.667 16.89 0.00 41.73 4.63
1886 2448 4.200283 GAGGACGCCGAGGAGCAG 62.200 72.222 0.00 0.00 0.00 4.24
2149 2714 3.242739 CCCAAGTGAGACAAACGAACAAG 60.243 47.826 0.00 0.00 0.00 3.16
2353 2942 6.775594 TGTGATTGACATGTAGCTACTACT 57.224 37.500 23.84 6.46 37.78 2.57
2354 2943 7.875327 TGTGATTGACATGTAGCTACTACTA 57.125 36.000 23.84 4.75 37.78 1.82
2355 2944 7.704271 TGTGATTGACATGTAGCTACTACTAC 58.296 38.462 23.84 12.09 42.41 2.73
2356 2945 7.556635 TGTGATTGACATGTAGCTACTACTACT 59.443 37.037 23.84 4.50 42.53 2.57
2360 2949 6.420638 TGACATGTAGCTACTACTACTCCAA 58.579 40.000 23.84 0.59 42.53 3.53
2421 3017 4.925068 ACGTACGTACATGGACCTTAATC 58.075 43.478 21.41 0.00 0.00 1.75
2425 3021 4.755411 ACGTACATGGACCTTAATCAGTG 58.245 43.478 1.43 0.00 0.00 3.66
2429 3025 4.755411 ACATGGACCTTAATCAGTGTACG 58.245 43.478 0.00 0.00 0.00 3.67
2433 3029 5.012239 TGGACCTTAATCAGTGTACGTACT 58.988 41.667 25.12 6.20 0.00 2.73
2448 3048 4.893424 ACGTACTTTTGTTCATGTGCTT 57.107 36.364 0.00 0.00 0.00 3.91
2515 3123 1.019278 ATGATTCGACGGTGGTGTGC 61.019 55.000 0.00 0.00 0.00 4.57
2526 3134 0.109458 GTGGTGTGCGTGATCGAGTA 60.109 55.000 0.00 0.00 39.71 2.59
2565 3173 4.591321 TGAGGGTTTAGCATCTGGAAAT 57.409 40.909 0.00 0.00 0.00 2.17
2599 3207 5.691305 GCTGTCAATGTAAAGTGCATTCAAA 59.309 36.000 0.00 0.00 34.68 2.69
2601 3209 7.254387 GCTGTCAATGTAAAGTGCATTCAAAAA 60.254 33.333 0.00 0.00 34.68 1.94
2661 3269 6.509418 TGTACCAGCATCCAAAAAGTATTC 57.491 37.500 0.00 0.00 0.00 1.75
2662 3270 5.417580 TGTACCAGCATCCAAAAAGTATTCC 59.582 40.000 0.00 0.00 0.00 3.01
2663 3271 4.677182 ACCAGCATCCAAAAAGTATTCCT 58.323 39.130 0.00 0.00 0.00 3.36
2664 3272 5.086621 ACCAGCATCCAAAAAGTATTCCTT 58.913 37.500 0.00 0.00 33.79 3.36
2665 3273 5.185828 ACCAGCATCCAAAAAGTATTCCTTC 59.814 40.000 0.00 0.00 31.27 3.46
2666 3274 5.394553 CCAGCATCCAAAAAGTATTCCTTCC 60.395 44.000 0.00 0.00 31.27 3.46
2668 3276 4.157840 GCATCCAAAAAGTATTCCTTCCGT 59.842 41.667 0.00 0.00 31.27 4.69
2669 3277 5.676331 GCATCCAAAAAGTATTCCTTCCGTC 60.676 44.000 0.00 0.00 31.27 4.79
2670 3278 4.329392 TCCAAAAAGTATTCCTTCCGTCC 58.671 43.478 0.00 0.00 31.27 4.79
2672 3280 3.967332 AAAAGTATTCCTTCCGTCCGA 57.033 42.857 0.00 0.00 31.27 4.55
2674 3282 3.967332 AAGTATTCCTTCCGTCCGAAA 57.033 42.857 0.00 0.00 0.00 3.46
2675 3283 3.967332 AGTATTCCTTCCGTCCGAAAA 57.033 42.857 0.00 0.00 0.00 2.29
2676 3284 4.482952 AGTATTCCTTCCGTCCGAAAAT 57.517 40.909 0.00 0.00 0.00 1.82
2677 3285 5.603170 AGTATTCCTTCCGTCCGAAAATA 57.397 39.130 0.00 0.00 0.00 1.40
2678 3286 5.354767 AGTATTCCTTCCGTCCGAAAATAC 58.645 41.667 0.00 0.00 35.86 1.89
2679 3287 3.967332 TTCCTTCCGTCCGAAAATACT 57.033 42.857 0.00 0.00 0.00 2.12
2680 3288 3.967332 TCCTTCCGTCCGAAAATACTT 57.033 42.857 0.00 0.00 0.00 2.24
2681 3289 3.592059 TCCTTCCGTCCGAAAATACTTG 58.408 45.455 0.00 0.00 0.00 3.16
2682 3290 3.007182 TCCTTCCGTCCGAAAATACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
2683 3291 3.370061 CCTTCCGTCCGAAAATACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
2684 3292 3.663995 TCCGTCCGAAAATACTTGTCA 57.336 42.857 0.00 0.00 0.00 3.58
2685 3293 4.196626 TCCGTCCGAAAATACTTGTCAT 57.803 40.909 0.00 0.00 0.00 3.06
2686 3294 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2687 3295 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2688 3296 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2689 3297 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2690 3298 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2691 3299 6.853872 CGTCCGAAAATACTTGTCATCAAAAA 59.146 34.615 0.00 0.00 32.87 1.94
2692 3300 7.059488 CGTCCGAAAATACTTGTCATCAAAAAG 59.941 37.037 0.00 0.00 32.87 2.27
2693 3301 8.073768 GTCCGAAAATACTTGTCATCAAAAAGA 58.926 33.333 0.00 0.00 32.87 2.52
2694 3302 8.625651 TCCGAAAATACTTGTCATCAAAAAGAA 58.374 29.630 0.00 0.00 32.87 2.52
2695 3303 9.410556 CCGAAAATACTTGTCATCAAAAAGAAT 57.589 29.630 0.00 0.00 32.87 2.40
2719 3327 8.980143 ATAAAAAGACATGTATTTTTGGACGG 57.020 30.769 36.42 0.00 41.99 4.79
2720 3328 6.642707 AAAAGACATGTATTTTTGGACGGA 57.357 33.333 22.22 0.00 30.77 4.69
2721 3329 5.880054 AAGACATGTATTTTTGGACGGAG 57.120 39.130 0.00 0.00 0.00 4.63
2722 3330 4.261801 AGACATGTATTTTTGGACGGAGG 58.738 43.478 0.00 0.00 0.00 4.30
2723 3331 3.352648 ACATGTATTTTTGGACGGAGGG 58.647 45.455 0.00 0.00 0.00 4.30
2724 3332 3.009695 ACATGTATTTTTGGACGGAGGGA 59.990 43.478 0.00 0.00 0.00 4.20
2725 3333 3.343941 TGTATTTTTGGACGGAGGGAG 57.656 47.619 0.00 0.00 0.00 4.30
2726 3334 2.640826 TGTATTTTTGGACGGAGGGAGT 59.359 45.455 0.00 0.00 0.00 3.85
2727 3335 3.839490 TGTATTTTTGGACGGAGGGAGTA 59.161 43.478 0.00 0.00 0.00 2.59
2728 3336 4.472108 TGTATTTTTGGACGGAGGGAGTAT 59.528 41.667 0.00 0.00 0.00 2.12
2729 3337 4.586306 ATTTTTGGACGGAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
2747 3355 0.383949 TTTGCTTGGCCGAAACAGTC 59.616 50.000 0.00 0.00 0.00 3.51
2762 3370 0.663568 CAGTCGCGAGAACCGTCTTT 60.664 55.000 10.24 0.00 45.01 2.52
2766 3374 1.137513 CGCGAGAACCGTCTTTTTCT 58.862 50.000 0.00 0.00 41.15 2.52
2820 3438 1.668919 CGGATCCGCAAGCGTATACAT 60.669 52.381 23.37 0.00 37.81 2.29
2821 3439 1.726791 GGATCCGCAAGCGTATACATG 59.273 52.381 13.80 0.00 37.81 3.21
2822 3440 1.726791 GATCCGCAAGCGTATACATGG 59.273 52.381 13.80 0.00 37.81 3.66
2823 3441 0.249699 TCCGCAAGCGTATACATGGG 60.250 55.000 13.80 6.97 37.81 4.00
2824 3442 1.227999 CCGCAAGCGTATACATGGGG 61.228 60.000 13.80 16.70 39.15 4.96
2825 3443 1.227999 CGCAAGCGTATACATGGGGG 61.228 60.000 6.25 0.00 34.35 5.40
2847 3465 1.583495 GGGGCGTCCTTTCTTTTCGG 61.583 60.000 5.77 0.00 0.00 4.30
2863 3481 2.198827 TCGGTCATTTTGAGCCATGT 57.801 45.000 1.48 0.00 41.50 3.21
2865 3483 3.270027 TCGGTCATTTTGAGCCATGTAG 58.730 45.455 1.48 0.00 41.50 2.74
2880 3498 1.301401 GTAGTGTGTCAAGCCGCCA 60.301 57.895 0.00 0.00 0.00 5.69
2894 3512 1.676014 GCCGCCAGCTTCTTCTTCTTA 60.676 52.381 0.00 0.00 38.99 2.10
2902 3520 6.459435 GCCAGCTTCTTCTTCTTAATGGAATC 60.459 42.308 0.00 0.00 0.00 2.52
2904 3522 7.338957 CCAGCTTCTTCTTCTTAATGGAATCTT 59.661 37.037 0.00 0.00 0.00 2.40
2906 3524 9.612066 AGCTTCTTCTTCTTAATGGAATCTTAG 57.388 33.333 0.00 0.00 0.00 2.18
2907 3525 8.341903 GCTTCTTCTTCTTAATGGAATCTTAGC 58.658 37.037 0.00 0.00 0.00 3.09
2908 3526 8.738645 TTCTTCTTCTTAATGGAATCTTAGCC 57.261 34.615 0.00 0.00 0.00 3.93
2909 3527 6.986817 TCTTCTTCTTAATGGAATCTTAGCCG 59.013 38.462 0.00 0.00 0.00 5.52
2910 3528 5.057149 TCTTCTTAATGGAATCTTAGCCGC 58.943 41.667 0.00 0.00 0.00 6.53
2911 3529 4.689612 TCTTAATGGAATCTTAGCCGCT 57.310 40.909 0.00 0.00 0.00 5.52
2912 3530 5.801531 TCTTAATGGAATCTTAGCCGCTA 57.198 39.130 0.00 0.00 0.00 4.26
2913 3531 6.360370 TCTTAATGGAATCTTAGCCGCTAT 57.640 37.500 0.00 0.00 0.00 2.97
2914 3532 6.398918 TCTTAATGGAATCTTAGCCGCTATC 58.601 40.000 0.00 0.00 0.00 2.08
2915 3533 3.618690 ATGGAATCTTAGCCGCTATCC 57.381 47.619 9.89 9.89 0.00 2.59
2916 3534 2.609747 TGGAATCTTAGCCGCTATCCT 58.390 47.619 15.62 0.00 0.00 3.24
2917 3535 2.563179 TGGAATCTTAGCCGCTATCCTC 59.437 50.000 15.62 5.47 0.00 3.71
2918 3536 2.093921 GGAATCTTAGCCGCTATCCTCC 60.094 54.545 9.63 6.57 0.00 4.30
2919 3537 2.614134 ATCTTAGCCGCTATCCTCCT 57.386 50.000 0.00 0.00 0.00 3.69
2920 3538 3.741245 ATCTTAGCCGCTATCCTCCTA 57.259 47.619 0.00 0.00 0.00 2.94
2921 3539 3.520691 TCTTAGCCGCTATCCTCCTAA 57.479 47.619 0.00 0.00 0.00 2.69
2922 3540 3.155501 TCTTAGCCGCTATCCTCCTAAC 58.844 50.000 0.00 0.00 0.00 2.34
2923 3541 2.973983 TAGCCGCTATCCTCCTAACT 57.026 50.000 0.00 0.00 0.00 2.24
2924 3542 2.089600 AGCCGCTATCCTCCTAACTT 57.910 50.000 0.00 0.00 0.00 2.66
2925 3543 2.399580 AGCCGCTATCCTCCTAACTTT 58.600 47.619 0.00 0.00 0.00 2.66
2926 3544 2.365941 AGCCGCTATCCTCCTAACTTTC 59.634 50.000 0.00 0.00 0.00 2.62
2927 3545 2.102588 GCCGCTATCCTCCTAACTTTCA 59.897 50.000 0.00 0.00 0.00 2.69
2928 3546 3.800604 GCCGCTATCCTCCTAACTTTCAG 60.801 52.174 0.00 0.00 0.00 3.02
2929 3547 3.637229 CCGCTATCCTCCTAACTTTCAGA 59.363 47.826 0.00 0.00 0.00 3.27
2930 3548 4.099573 CCGCTATCCTCCTAACTTTCAGAA 59.900 45.833 0.00 0.00 0.00 3.02
2931 3549 5.221541 CCGCTATCCTCCTAACTTTCAGAAT 60.222 44.000 0.00 0.00 0.00 2.40
2932 3550 6.015350 CCGCTATCCTCCTAACTTTCAGAATA 60.015 42.308 0.00 0.00 0.00 1.75
2933 3551 7.310113 CCGCTATCCTCCTAACTTTCAGAATAT 60.310 40.741 0.00 0.00 0.00 1.28
2934 3552 8.740906 CGCTATCCTCCTAACTTTCAGAATATA 58.259 37.037 0.00 0.00 0.00 0.86
2958 3576 6.620877 AACTAGGTTCTCAACATATGGTCA 57.379 37.500 7.80 0.00 0.00 4.02
2959 3577 6.620877 ACTAGGTTCTCAACATATGGTCAA 57.379 37.500 7.80 0.00 0.00 3.18
2960 3578 7.016153 ACTAGGTTCTCAACATATGGTCAAA 57.984 36.000 7.80 0.00 0.00 2.69
2961 3579 7.633789 ACTAGGTTCTCAACATATGGTCAAAT 58.366 34.615 7.80 0.00 0.00 2.32
2962 3580 6.764308 AGGTTCTCAACATATGGTCAAATG 57.236 37.500 7.80 0.00 0.00 2.32
2963 3581 5.653769 AGGTTCTCAACATATGGTCAAATGG 59.346 40.000 7.80 0.00 0.00 3.16
2964 3582 5.418840 GGTTCTCAACATATGGTCAAATGGT 59.581 40.000 7.80 0.00 0.00 3.55
2965 3583 6.071391 GGTTCTCAACATATGGTCAAATGGTT 60.071 38.462 7.80 0.00 0.00 3.67
2966 3584 7.378181 GTTCTCAACATATGGTCAAATGGTTT 58.622 34.615 7.80 0.00 0.00 3.27
2967 3585 8.519526 GTTCTCAACATATGGTCAAATGGTTTA 58.480 33.333 7.80 0.00 0.00 2.01
2968 3586 8.050778 TCTCAACATATGGTCAAATGGTTTAC 57.949 34.615 7.80 0.00 0.00 2.01
2969 3587 7.667635 TCTCAACATATGGTCAAATGGTTTACA 59.332 33.333 7.80 0.00 0.00 2.41
2970 3588 8.183104 TCAACATATGGTCAAATGGTTTACAA 57.817 30.769 7.80 0.00 0.00 2.41
2971 3589 8.085296 TCAACATATGGTCAAATGGTTTACAAC 58.915 33.333 7.80 0.00 0.00 3.32
2991 3609 7.303634 ACAACCTAGTTTATAATCTGTTGCG 57.696 36.000 18.02 5.41 36.26 4.85
2992 3610 6.315393 ACAACCTAGTTTATAATCTGTTGCGG 59.685 38.462 18.02 9.41 36.26 5.69
2993 3611 6.229936 ACCTAGTTTATAATCTGTTGCGGA 57.770 37.500 6.35 0.00 0.00 5.54
2994 3612 6.827727 ACCTAGTTTATAATCTGTTGCGGAT 58.172 36.000 6.35 0.00 0.00 4.18
2995 3613 7.280356 ACCTAGTTTATAATCTGTTGCGGATT 58.720 34.615 6.35 8.09 41.61 3.01
2996 3614 7.226720 ACCTAGTTTATAATCTGTTGCGGATTG 59.773 37.037 12.05 0.00 39.46 2.67
2997 3615 6.377327 AGTTTATAATCTGTTGCGGATTGG 57.623 37.500 12.05 0.00 39.46 3.16
2998 3616 4.829064 TTATAATCTGTTGCGGATTGGC 57.171 40.909 12.05 0.00 39.46 4.52
2999 3617 1.388547 TAATCTGTTGCGGATTGGCC 58.611 50.000 12.05 0.00 39.46 5.36
3000 3618 0.323725 AATCTGTTGCGGATTGGCCT 60.324 50.000 3.32 0.00 37.96 5.19
3001 3619 0.546122 ATCTGTTGCGGATTGGCCTA 59.454 50.000 3.32 0.00 0.00 3.93
3002 3620 0.326595 TCTGTTGCGGATTGGCCTAA 59.673 50.000 3.32 0.00 0.00 2.69
3003 3621 0.451783 CTGTTGCGGATTGGCCTAAC 59.548 55.000 3.32 0.00 34.11 2.34
3004 3622 1.302383 TGTTGCGGATTGGCCTAACG 61.302 55.000 3.32 7.32 35.42 3.18
3005 3623 1.022451 GTTGCGGATTGGCCTAACGA 61.022 55.000 16.30 2.14 0.00 3.85
3006 3624 0.107410 TTGCGGATTGGCCTAACGAT 60.107 50.000 16.30 0.00 0.00 3.73
3007 3625 0.753867 TGCGGATTGGCCTAACGATA 59.246 50.000 16.30 4.13 0.00 2.92
3008 3626 1.139256 TGCGGATTGGCCTAACGATAA 59.861 47.619 16.30 0.00 0.00 1.75
3009 3627 2.224426 TGCGGATTGGCCTAACGATAAT 60.224 45.455 16.30 0.66 0.00 1.28
3010 3628 2.159627 GCGGATTGGCCTAACGATAATG 59.840 50.000 16.30 0.00 0.00 1.90
3011 3629 3.659786 CGGATTGGCCTAACGATAATGA 58.340 45.455 3.32 0.00 0.00 2.57
3012 3630 4.062293 CGGATTGGCCTAACGATAATGAA 58.938 43.478 3.32 0.00 0.00 2.57
3013 3631 4.152402 CGGATTGGCCTAACGATAATGAAG 59.848 45.833 3.32 0.00 0.00 3.02
3014 3632 5.305585 GGATTGGCCTAACGATAATGAAGA 58.694 41.667 3.32 0.00 0.00 2.87
3015 3633 5.940470 GGATTGGCCTAACGATAATGAAGAT 59.060 40.000 3.32 0.00 0.00 2.40
3016 3634 6.092807 GGATTGGCCTAACGATAATGAAGATC 59.907 42.308 3.32 0.00 0.00 2.75
3017 3635 5.545063 TGGCCTAACGATAATGAAGATCA 57.455 39.130 3.32 0.00 0.00 2.92
3018 3636 5.297547 TGGCCTAACGATAATGAAGATCAC 58.702 41.667 3.32 0.00 0.00 3.06
3019 3637 5.070446 TGGCCTAACGATAATGAAGATCACT 59.930 40.000 3.32 0.00 0.00 3.41
3020 3638 6.266786 TGGCCTAACGATAATGAAGATCACTA 59.733 38.462 3.32 0.00 0.00 2.74
3021 3639 6.809196 GGCCTAACGATAATGAAGATCACTAG 59.191 42.308 0.00 0.00 0.00 2.57
3022 3640 7.309255 GGCCTAACGATAATGAAGATCACTAGA 60.309 40.741 0.00 0.00 0.00 2.43
3023 3641 8.082852 GCCTAACGATAATGAAGATCACTAGAA 58.917 37.037 0.00 0.00 0.00 2.10
3024 3642 9.619316 CCTAACGATAATGAAGATCACTAGAAG 57.381 37.037 0.00 0.00 0.00 2.85
3025 3643 9.619316 CTAACGATAATGAAGATCACTAGAAGG 57.381 37.037 0.00 0.00 0.00 3.46
3026 3644 6.451393 ACGATAATGAAGATCACTAGAAGGC 58.549 40.000 0.00 0.00 0.00 4.35
3060 3678 9.716531 TTCATGCCTCTAAATGAACTAGATATG 57.283 33.333 0.00 0.00 37.76 1.78
3061 3679 8.874156 TCATGCCTCTAAATGAACTAGATATGT 58.126 33.333 0.00 0.00 29.97 2.29
3062 3680 8.933807 CATGCCTCTAAATGAACTAGATATGTG 58.066 37.037 0.00 0.00 0.00 3.21
3063 3681 6.931281 TGCCTCTAAATGAACTAGATATGTGC 59.069 38.462 0.00 0.00 0.00 4.57
3064 3682 6.370166 GCCTCTAAATGAACTAGATATGTGCC 59.630 42.308 0.00 0.00 0.00 5.01
3065 3683 7.675062 CCTCTAAATGAACTAGATATGTGCCT 58.325 38.462 0.00 0.00 0.00 4.75
3066 3684 8.153550 CCTCTAAATGAACTAGATATGTGCCTT 58.846 37.037 0.00 0.00 0.00 4.35
3073 3691 9.717942 ATGAACTAGATATGTGCCTTATCTTTC 57.282 33.333 0.00 11.72 37.53 2.62
3074 3692 8.150945 TGAACTAGATATGTGCCTTATCTTTCC 58.849 37.037 0.00 5.26 37.53 3.13
3075 3693 7.010339 ACTAGATATGTGCCTTATCTTTCCC 57.990 40.000 0.00 0.00 37.53 3.97
3076 3694 5.248380 AGATATGTGCCTTATCTTTCCCC 57.752 43.478 5.38 0.00 33.60 4.81
3077 3695 2.348411 ATGTGCCTTATCTTTCCCCG 57.652 50.000 0.00 0.00 0.00 5.73
3078 3696 0.393808 TGTGCCTTATCTTTCCCCGC 60.394 55.000 0.00 0.00 0.00 6.13
3079 3697 1.101635 GTGCCTTATCTTTCCCCGCC 61.102 60.000 0.00 0.00 0.00 6.13
3080 3698 1.226262 GCCTTATCTTTCCCCGCCA 59.774 57.895 0.00 0.00 0.00 5.69
3081 3699 0.395173 GCCTTATCTTTCCCCGCCAA 60.395 55.000 0.00 0.00 0.00 4.52
3082 3700 1.754201 GCCTTATCTTTCCCCGCCAAT 60.754 52.381 0.00 0.00 0.00 3.16
3083 3701 2.488347 GCCTTATCTTTCCCCGCCAATA 60.488 50.000 0.00 0.00 0.00 1.90
3084 3702 3.827722 CCTTATCTTTCCCCGCCAATAA 58.172 45.455 0.00 0.00 0.00 1.40
3085 3703 4.211920 CCTTATCTTTCCCCGCCAATAAA 58.788 43.478 0.00 0.00 0.00 1.40
3086 3704 4.278419 CCTTATCTTTCCCCGCCAATAAAG 59.722 45.833 0.00 0.00 0.00 1.85
3087 3705 3.662759 ATCTTTCCCCGCCAATAAAGA 57.337 42.857 0.00 0.00 40.96 2.52
3088 3706 3.662759 TCTTTCCCCGCCAATAAAGAT 57.337 42.857 0.00 0.00 34.05 2.40
3089 3707 3.976015 TCTTTCCCCGCCAATAAAGATT 58.024 40.909 0.00 0.00 34.05 2.40
3090 3708 5.118729 TCTTTCCCCGCCAATAAAGATTA 57.881 39.130 0.00 0.00 34.05 1.75
3091 3709 5.130350 TCTTTCCCCGCCAATAAAGATTAG 58.870 41.667 0.00 0.00 34.05 1.73
3092 3710 3.502123 TCCCCGCCAATAAAGATTAGG 57.498 47.619 0.00 0.00 0.00 2.69
3093 3711 3.050089 TCCCCGCCAATAAAGATTAGGA 58.950 45.455 0.00 0.00 0.00 2.94
3094 3712 3.655777 TCCCCGCCAATAAAGATTAGGAT 59.344 43.478 0.00 0.00 0.00 3.24
3095 3713 4.105697 TCCCCGCCAATAAAGATTAGGATT 59.894 41.667 0.00 0.00 0.00 3.01
3096 3714 5.311121 TCCCCGCCAATAAAGATTAGGATTA 59.689 40.000 0.00 0.00 0.00 1.75
3097 3715 5.648092 CCCCGCCAATAAAGATTAGGATTAG 59.352 44.000 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.462174 TTTCAGTGATTTGATTGTATGAAACAC 57.538 29.630 0.00 0.00 38.00 3.32
147 165 3.128242 CAGAAAGAATCAATGAGCGGCTT 59.872 43.478 2.97 0.00 0.00 4.35
204 222 0.034767 CATCACATGGAGGCAGTGGT 60.035 55.000 0.00 0.00 34.17 4.16
248 266 3.452786 TCTTGGGGAGAGCGAGCG 61.453 66.667 0.00 0.00 0.00 5.03
319 337 8.904834 ACACATAGTACTCAGTAATAAGTGGAG 58.095 37.037 23.98 7.10 40.26 3.86
320 338 8.818622 ACACATAGTACTCAGTAATAAGTGGA 57.181 34.615 23.98 0.00 40.26 4.02
333 351 7.258441 TGCTCTCATGTTAACACATAGTACTC 58.742 38.462 11.22 0.00 42.14 2.59
334 352 7.170393 TGCTCTCATGTTAACACATAGTACT 57.830 36.000 11.22 0.00 42.14 2.73
335 353 7.042456 CCATGCTCTCATGTTAACACATAGTAC 60.042 40.741 11.22 6.21 46.64 2.73
510 683 8.671921 CCTAATAGATGCATGTGAATATTGTCC 58.328 37.037 2.46 0.00 0.00 4.02
625 1140 1.959985 CCTCACACTCACTCACTCACT 59.040 52.381 0.00 0.00 0.00 3.41
626 1141 1.683917 ACCTCACACTCACTCACTCAC 59.316 52.381 0.00 0.00 0.00 3.51
627 1142 1.683385 CACCTCACACTCACTCACTCA 59.317 52.381 0.00 0.00 0.00 3.41
628 1143 1.957177 TCACCTCACACTCACTCACTC 59.043 52.381 0.00 0.00 0.00 3.51
629 1144 2.073252 TCACCTCACACTCACTCACT 57.927 50.000 0.00 0.00 0.00 3.41
630 1145 2.297315 TCATCACCTCACACTCACTCAC 59.703 50.000 0.00 0.00 0.00 3.51
631 1146 2.597455 TCATCACCTCACACTCACTCA 58.403 47.619 0.00 0.00 0.00 3.41
632 1147 3.667497 TTCATCACCTCACACTCACTC 57.333 47.619 0.00 0.00 0.00 3.51
633 1148 4.384056 CTTTTCATCACCTCACACTCACT 58.616 43.478 0.00 0.00 0.00 3.41
634 1149 3.499918 CCTTTTCATCACCTCACACTCAC 59.500 47.826 0.00 0.00 0.00 3.51
635 1150 3.743521 CCTTTTCATCACCTCACACTCA 58.256 45.455 0.00 0.00 0.00 3.41
636 1151 2.485814 GCCTTTTCATCACCTCACACTC 59.514 50.000 0.00 0.00 0.00 3.51
637 1152 2.158623 TGCCTTTTCATCACCTCACACT 60.159 45.455 0.00 0.00 0.00 3.55
638 1153 2.229792 TGCCTTTTCATCACCTCACAC 58.770 47.619 0.00 0.00 0.00 3.82
639 1154 2.655090 TGCCTTTTCATCACCTCACA 57.345 45.000 0.00 0.00 0.00 3.58
640 1155 2.416431 GCATGCCTTTTCATCACCTCAC 60.416 50.000 6.36 0.00 0.00 3.51
664 1179 2.061028 CATCCGTTTGGCTCTTTTTGC 58.939 47.619 0.00 0.00 34.14 3.68
665 1180 3.052036 CACATCCGTTTGGCTCTTTTTG 58.948 45.455 0.00 0.00 34.14 2.44
666 1181 2.955660 TCACATCCGTTTGGCTCTTTTT 59.044 40.909 0.00 0.00 34.14 1.94
667 1182 2.554032 CTCACATCCGTTTGGCTCTTTT 59.446 45.455 0.00 0.00 34.14 2.27
738 1263 5.869350 CATGCATGCATGTAGATGTAGATG 58.131 41.667 40.30 20.49 46.20 2.90
751 1276 3.572632 AGAACTACCTCATGCATGCAT 57.427 42.857 27.46 27.46 37.08 3.96
752 1277 3.452264 ACTAGAACTACCTCATGCATGCA 59.548 43.478 25.04 25.04 0.00 3.96
753 1278 4.065321 ACTAGAACTACCTCATGCATGC 57.935 45.455 22.25 11.82 0.00 4.06
770 1299 3.062129 TCCCTCCCTCCCTAGTAACTAG 58.938 54.545 0.00 0.00 34.16 2.57
771 1300 3.062129 CTCCCTCCCTCCCTAGTAACTA 58.938 54.545 0.00 0.00 0.00 2.24
772 1301 1.860906 CTCCCTCCCTCCCTAGTAACT 59.139 57.143 0.00 0.00 0.00 2.24
773 1302 1.133104 CCTCCCTCCCTCCCTAGTAAC 60.133 61.905 0.00 0.00 0.00 2.50
774 1303 1.242444 CCTCCCTCCCTCCCTAGTAA 58.758 60.000 0.00 0.00 0.00 2.24
775 1304 0.705166 CCCTCCCTCCCTCCCTAGTA 60.705 65.000 0.00 0.00 0.00 1.82
776 1305 2.021652 CCCTCCCTCCCTCCCTAGT 61.022 68.421 0.00 0.00 0.00 2.57
777 1306 1.705450 TCCCTCCCTCCCTCCCTAG 60.705 68.421 0.00 0.00 0.00 3.02
778 1307 1.705450 CTCCCTCCCTCCCTCCCTA 60.705 68.421 0.00 0.00 0.00 3.53
779 1308 2.541709 TACTCCCTCCCTCCCTCCCT 62.542 65.000 0.00 0.00 0.00 4.20
780 1309 2.019272 TACTCCCTCCCTCCCTCCC 61.019 68.421 0.00 0.00 0.00 4.30
781 1310 1.233659 GTACTCCCTCCCTCCCTCC 59.766 68.421 0.00 0.00 0.00 4.30
782 1311 0.637743 AAGTACTCCCTCCCTCCCTC 59.362 60.000 0.00 0.00 0.00 4.30
783 1312 0.340208 CAAGTACTCCCTCCCTCCCT 59.660 60.000 0.00 0.00 0.00 4.20
784 1313 1.338890 GCAAGTACTCCCTCCCTCCC 61.339 65.000 0.00 0.00 0.00 4.30
785 1314 1.338890 GGCAAGTACTCCCTCCCTCC 61.339 65.000 0.00 0.00 0.00 4.30
786 1315 0.325765 AGGCAAGTACTCCCTCCCTC 60.326 60.000 8.79 0.00 0.00 4.30
820 1349 1.083806 TAGCTGAGCGATGCGTTTGG 61.084 55.000 0.00 0.00 0.00 3.28
867 1396 1.181786 GGAGAGTGAGTGGAGTGGAG 58.818 60.000 0.00 0.00 0.00 3.86
868 1397 0.780637 AGGAGAGTGAGTGGAGTGGA 59.219 55.000 0.00 0.00 0.00 4.02
869 1398 1.638529 AAGGAGAGTGAGTGGAGTGG 58.361 55.000 0.00 0.00 0.00 4.00
870 1399 2.366916 ACAAAGGAGAGTGAGTGGAGTG 59.633 50.000 0.00 0.00 0.00 3.51
871 1400 2.366916 CACAAAGGAGAGTGAGTGGAGT 59.633 50.000 0.00 0.00 37.97 3.85
903 1432 3.892740 TTGACGGTGATGGCCACGG 62.893 63.158 8.16 2.10 46.62 4.94
904 1433 1.305219 ATTTGACGGTGATGGCCACG 61.305 55.000 8.16 10.31 46.62 4.94
905 1434 1.745232 TATTTGACGGTGATGGCCAC 58.255 50.000 8.16 2.36 44.95 5.01
946 1475 0.034616 GAGCTGAGCACTGGTCACTT 59.965 55.000 7.39 0.00 40.45 3.16
947 1476 1.117749 TGAGCTGAGCACTGGTCACT 61.118 55.000 16.50 9.33 43.58 3.41
948 1477 1.368950 TGAGCTGAGCACTGGTCAC 59.631 57.895 16.50 5.07 43.58 3.67
949 1478 1.368950 GTGAGCTGAGCACTGGTCA 59.631 57.895 16.50 16.50 45.19 4.02
950 1479 1.375268 GGTGAGCTGAGCACTGGTC 60.375 63.158 7.39 12.11 40.88 4.02
951 1480 1.825281 GAGGTGAGCTGAGCACTGGT 61.825 60.000 7.39 0.00 36.53 4.00
952 1481 1.079266 GAGGTGAGCTGAGCACTGG 60.079 63.158 7.39 0.00 36.53 4.00
953 1482 0.034476 TTGAGGTGAGCTGAGCACTG 59.966 55.000 7.39 0.00 36.53 3.66
954 1483 0.321021 CTTGAGGTGAGCTGAGCACT 59.679 55.000 7.39 0.00 36.53 4.40
955 1484 1.297456 GCTTGAGGTGAGCTGAGCAC 61.297 60.000 7.39 0.00 37.18 4.40
956 1485 1.004080 GCTTGAGGTGAGCTGAGCA 60.004 57.895 7.39 0.00 37.18 4.26
992 1521 0.379669 CTTCGCATCCATGGCTCAAC 59.620 55.000 6.96 0.00 0.00 3.18
1374 1918 1.272554 GGTTGGAGGGGAGGTACCTG 61.273 65.000 22.10 0.00 38.79 4.00
1580 2127 0.729690 GCCAAAGAGACGGAGAATGC 59.270 55.000 0.00 0.00 0.00 3.56
1606 2153 4.003648 ACCCAAAATCTCGTGATCAGAAC 58.996 43.478 0.00 0.00 31.51 3.01
1609 2156 3.372206 GTGACCCAAAATCTCGTGATCAG 59.628 47.826 0.00 0.00 31.51 2.90
1620 2167 0.107081 TCGTGACGGTGACCCAAAAT 59.893 50.000 4.70 0.00 0.00 1.82
1633 2192 5.123502 TCCATCAGTACTAAGAACTCGTGAC 59.876 44.000 0.00 0.00 0.00 3.67
1661 2220 0.322322 CCAAGCAACCAACCATGCAT 59.678 50.000 0.00 0.00 44.95 3.96
1662 2221 1.047596 ACCAAGCAACCAACCATGCA 61.048 50.000 0.00 0.00 44.95 3.96
1663 2222 0.106521 AACCAAGCAACCAACCATGC 59.893 50.000 0.00 0.00 42.87 4.06
1664 2223 2.102925 AGAAACCAAGCAACCAACCATG 59.897 45.455 0.00 0.00 0.00 3.66
1665 2224 2.397597 AGAAACCAAGCAACCAACCAT 58.602 42.857 0.00 0.00 0.00 3.55
1666 2225 1.859302 AGAAACCAAGCAACCAACCA 58.141 45.000 0.00 0.00 0.00 3.67
1667 2226 2.979814 AAGAAACCAAGCAACCAACC 57.020 45.000 0.00 0.00 0.00 3.77
1668 2227 3.855858 TGAAAGAAACCAAGCAACCAAC 58.144 40.909 0.00 0.00 0.00 3.77
1669 2228 4.440880 CATGAAAGAAACCAAGCAACCAA 58.559 39.130 0.00 0.00 0.00 3.67
1676 2235 3.749665 TTGGCCATGAAAGAAACCAAG 57.250 42.857 6.09 0.00 32.44 3.61
1698 2257 3.058914 CGCGTTTCTTCTTGGTCTTGATT 60.059 43.478 0.00 0.00 0.00 2.57
1722 2284 4.103103 CGACGACTCCGAGCTGCA 62.103 66.667 1.02 0.00 39.50 4.41
1808 2370 3.240134 ATCGTTGTGCCCTGCGTCT 62.240 57.895 0.00 0.00 0.00 4.18
1810 2372 2.742372 GATCGTTGTGCCCTGCGT 60.742 61.111 0.00 0.00 0.00 5.24
1860 2422 4.500116 GGCGTCCTCGGAGCTGAC 62.500 72.222 0.00 2.04 37.56 3.51
2149 2714 2.640581 ATTATTGGTCTGGCCGGGGC 62.641 60.000 14.65 14.65 41.21 5.80
2313 2902 2.437359 ATGCAAGGCTCAGGCGTC 60.437 61.111 0.00 0.00 39.81 5.19
2314 2903 2.749044 CATGCAAGGCTCAGGCGT 60.749 61.111 0.00 0.00 39.81 5.68
2315 2904 2.749044 ACATGCAAGGCTCAGGCG 60.749 61.111 0.00 0.00 39.81 5.52
2316 2905 1.035932 ATCACATGCAAGGCTCAGGC 61.036 55.000 0.00 0.00 37.82 4.85
2317 2906 1.134367 CAATCACATGCAAGGCTCAGG 59.866 52.381 0.00 0.00 0.00 3.86
2318 2907 2.089201 TCAATCACATGCAAGGCTCAG 58.911 47.619 0.00 0.00 0.00 3.35
2319 2908 1.814394 GTCAATCACATGCAAGGCTCA 59.186 47.619 0.00 0.00 0.00 4.26
2320 2909 1.814394 TGTCAATCACATGCAAGGCTC 59.186 47.619 0.00 0.00 0.00 4.70
2321 2910 1.913778 TGTCAATCACATGCAAGGCT 58.086 45.000 0.00 0.00 0.00 4.58
2351 2940 2.928416 GCAACCGCTTTGGAGTAGT 58.072 52.632 0.00 0.00 42.00 2.73
2371 2960 1.255033 TGGATGGATCCCTACTCCCT 58.745 55.000 9.90 0.00 46.59 4.20
2372 2961 1.912043 CATGGATGGATCCCTACTCCC 59.088 57.143 9.90 1.97 46.59 4.30
2421 3017 6.126741 CACATGAACAAAAGTACGTACACTG 58.873 40.000 26.55 20.45 0.00 3.66
2425 3021 5.338614 AGCACATGAACAAAAGTACGTAC 57.661 39.130 18.10 18.10 0.00 3.67
2429 3025 6.310224 ACAAACAAGCACATGAACAAAAGTAC 59.690 34.615 0.00 0.00 0.00 2.73
2433 3029 5.106791 CCAACAAACAAGCACATGAACAAAA 60.107 36.000 0.00 0.00 0.00 2.44
2448 3048 3.805108 GCATGCATAAACCCCAACAAACA 60.805 43.478 14.21 0.00 0.00 2.83
2515 3123 1.193203 GCATGCCATTACTCGATCACG 59.807 52.381 6.36 0.00 41.26 4.35
2565 3173 2.560504 ACATTGACAGCACGAAAGACA 58.439 42.857 0.00 0.00 0.00 3.41
2642 3250 5.394553 GGAAGGAATACTTTTTGGATGCTGG 60.395 44.000 0.00 0.00 40.21 4.85
2661 3269 3.332034 ACAAGTATTTTCGGACGGAAGG 58.668 45.455 0.00 0.00 35.70 3.46
2662 3270 3.991773 TGACAAGTATTTTCGGACGGAAG 59.008 43.478 0.00 0.00 35.70 3.46
2663 3271 3.992643 TGACAAGTATTTTCGGACGGAA 58.007 40.909 0.00 0.00 0.00 4.30
2664 3272 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2665 3273 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2666 3274 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2668 3276 8.160521 TCTTTTTGATGACAAGTATTTTCGGA 57.839 30.769 0.00 0.00 37.32 4.55
2669 3277 8.795786 TTCTTTTTGATGACAAGTATTTTCGG 57.204 30.769 0.00 0.00 37.32 4.30
2693 3301 9.418045 CCGTCCAAAAATACATGTCTTTTTATT 57.582 29.630 25.38 8.50 33.89 1.40
2694 3302 8.798402 TCCGTCCAAAAATACATGTCTTTTTAT 58.202 29.630 25.38 9.95 33.89 1.40
2695 3303 8.167605 TCCGTCCAAAAATACATGTCTTTTTA 57.832 30.769 25.38 14.15 33.89 1.52
2696 3304 7.045126 TCCGTCCAAAAATACATGTCTTTTT 57.955 32.000 22.18 22.18 35.51 1.94
2697 3305 6.294508 CCTCCGTCCAAAAATACATGTCTTTT 60.295 38.462 14.31 14.31 0.00 2.27
2698 3306 5.183140 CCTCCGTCCAAAAATACATGTCTTT 59.817 40.000 0.00 1.74 0.00 2.52
2699 3307 4.700213 CCTCCGTCCAAAAATACATGTCTT 59.300 41.667 0.00 0.00 0.00 3.01
2700 3308 4.261801 CCTCCGTCCAAAAATACATGTCT 58.738 43.478 0.00 0.00 0.00 3.41
2701 3309 3.377172 CCCTCCGTCCAAAAATACATGTC 59.623 47.826 0.00 0.00 0.00 3.06
2702 3310 3.009695 TCCCTCCGTCCAAAAATACATGT 59.990 43.478 2.69 2.69 0.00 3.21
2703 3311 3.616219 TCCCTCCGTCCAAAAATACATG 58.384 45.455 0.00 0.00 0.00 3.21
2704 3312 3.265995 ACTCCCTCCGTCCAAAAATACAT 59.734 43.478 0.00 0.00 0.00 2.29
2705 3313 2.640826 ACTCCCTCCGTCCAAAAATACA 59.359 45.455 0.00 0.00 0.00 2.29
2706 3314 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
2707 3315 5.703730 AATACTCCCTCCGTCCAAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
2708 3316 4.586306 AATACTCCCTCCGTCCAAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
2709 3317 4.076394 CAAATACTCCCTCCGTCCAAAAA 58.924 43.478 0.00 0.00 0.00 1.94
2710 3318 3.681593 CAAATACTCCCTCCGTCCAAAA 58.318 45.455 0.00 0.00 0.00 2.44
2711 3319 2.617021 GCAAATACTCCCTCCGTCCAAA 60.617 50.000 0.00 0.00 0.00 3.28
2712 3320 1.065709 GCAAATACTCCCTCCGTCCAA 60.066 52.381 0.00 0.00 0.00 3.53
2713 3321 0.539986 GCAAATACTCCCTCCGTCCA 59.460 55.000 0.00 0.00 0.00 4.02
2714 3322 0.831307 AGCAAATACTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
2715 3323 2.280628 CAAGCAAATACTCCCTCCGTC 58.719 52.381 0.00 0.00 0.00 4.79
2716 3324 1.065418 CCAAGCAAATACTCCCTCCGT 60.065 52.381 0.00 0.00 0.00 4.69
2717 3325 1.668419 CCAAGCAAATACTCCCTCCG 58.332 55.000 0.00 0.00 0.00 4.63
2718 3326 1.393603 GCCAAGCAAATACTCCCTCC 58.606 55.000 0.00 0.00 0.00 4.30
2719 3327 1.393603 GGCCAAGCAAATACTCCCTC 58.606 55.000 0.00 0.00 0.00 4.30
2720 3328 0.394352 CGGCCAAGCAAATACTCCCT 60.394 55.000 2.24 0.00 0.00 4.20
2721 3329 0.393808 TCGGCCAAGCAAATACTCCC 60.394 55.000 2.24 0.00 0.00 4.30
2722 3330 1.459450 TTCGGCCAAGCAAATACTCC 58.541 50.000 2.24 0.00 0.00 3.85
2723 3331 2.227865 TGTTTCGGCCAAGCAAATACTC 59.772 45.455 2.24 0.00 0.00 2.59
2724 3332 2.228822 CTGTTTCGGCCAAGCAAATACT 59.771 45.455 2.24 0.00 0.00 2.12
2725 3333 2.030274 ACTGTTTCGGCCAAGCAAATAC 60.030 45.455 2.24 0.00 0.00 1.89
2726 3334 2.227865 GACTGTTTCGGCCAAGCAAATA 59.772 45.455 2.24 0.00 0.00 1.40
2727 3335 1.000274 GACTGTTTCGGCCAAGCAAAT 60.000 47.619 2.24 0.00 0.00 2.32
2728 3336 0.383949 GACTGTTTCGGCCAAGCAAA 59.616 50.000 2.24 0.00 0.00 3.68
2729 3337 1.781025 CGACTGTTTCGGCCAAGCAA 61.781 55.000 2.24 0.00 44.60 3.91
2747 3355 1.137513 AGAAAAAGACGGTTCTCGCG 58.862 50.000 0.00 0.00 43.89 5.87
2750 3358 5.986004 TCTTGAAGAAAAAGACGGTTCTC 57.014 39.130 0.00 0.00 32.90 2.87
2762 3370 8.889717 GTTCCACGGAATATAATCTTGAAGAAA 58.110 33.333 0.00 0.00 36.45 2.52
2766 3374 7.335627 AGTGTTCCACGGAATATAATCTTGAA 58.664 34.615 1.02 0.00 39.64 2.69
2812 3430 1.758592 CCCCACCCCCATGTATACG 59.241 63.158 0.00 0.00 0.00 3.06
2823 3441 4.735358 GAAAGGACGCCCCCACCC 62.735 72.222 0.00 0.00 34.66 4.61
2824 3442 2.708593 AAAGAAAGGACGCCCCCACC 62.709 60.000 0.00 0.00 34.66 4.61
2825 3443 0.826256 AAAAGAAAGGACGCCCCCAC 60.826 55.000 0.00 0.00 34.66 4.61
2847 3465 4.216257 ACACACTACATGGCTCAAAATGAC 59.784 41.667 0.00 0.00 0.00 3.06
2863 3481 1.005037 CTGGCGGCTTGACACACTA 60.005 57.895 11.43 0.00 0.00 2.74
2865 3483 4.030452 GCTGGCGGCTTGACACAC 62.030 66.667 11.99 0.00 38.06 3.82
2880 3498 9.612066 CTAAGATTCCATTAAGAAGAAGAAGCT 57.388 33.333 0.00 0.00 31.81 3.74
2889 3507 5.036117 AGCGGCTAAGATTCCATTAAGAA 57.964 39.130 0.00 0.00 0.00 2.52
2894 3512 3.584848 AGGATAGCGGCTAAGATTCCATT 59.415 43.478 22.73 6.70 0.00 3.16
2902 3520 3.158676 AGTTAGGAGGATAGCGGCTAAG 58.841 50.000 14.54 0.00 0.00 2.18
2904 3522 2.973983 AGTTAGGAGGATAGCGGCTA 57.026 50.000 12.80 12.80 0.00 3.93
2906 3524 2.102588 TGAAAGTTAGGAGGATAGCGGC 59.897 50.000 0.00 0.00 0.00 6.53
2907 3525 3.637229 TCTGAAAGTTAGGAGGATAGCGG 59.363 47.826 0.00 0.00 33.76 5.52
2908 3526 4.920640 TCTGAAAGTTAGGAGGATAGCG 57.079 45.455 0.00 0.00 33.76 4.26
2932 3550 8.768397 TGACCATATGTTGAGAACCTAGTTTAT 58.232 33.333 1.24 0.00 0.00 1.40
2933 3551 8.141298 TGACCATATGTTGAGAACCTAGTTTA 57.859 34.615 1.24 0.00 0.00 2.01
2934 3552 7.016153 TGACCATATGTTGAGAACCTAGTTT 57.984 36.000 1.24 0.00 0.00 2.66
2935 3553 6.620877 TGACCATATGTTGAGAACCTAGTT 57.379 37.500 1.24 0.00 0.00 2.24
2936 3554 6.620877 TTGACCATATGTTGAGAACCTAGT 57.379 37.500 1.24 0.00 0.00 2.57
2937 3555 7.012704 CCATTTGACCATATGTTGAGAACCTAG 59.987 40.741 1.24 0.00 0.00 3.02
2938 3556 6.828273 CCATTTGACCATATGTTGAGAACCTA 59.172 38.462 1.24 0.00 0.00 3.08
2939 3557 5.653769 CCATTTGACCATATGTTGAGAACCT 59.346 40.000 1.24 0.00 0.00 3.50
2940 3558 5.418840 ACCATTTGACCATATGTTGAGAACC 59.581 40.000 1.24 0.00 0.00 3.62
2941 3559 6.515272 ACCATTTGACCATATGTTGAGAAC 57.485 37.500 1.24 0.00 0.00 3.01
2942 3560 7.537596 AAACCATTTGACCATATGTTGAGAA 57.462 32.000 1.24 0.00 0.00 2.87
2943 3561 7.667635 TGTAAACCATTTGACCATATGTTGAGA 59.332 33.333 1.24 0.00 0.00 3.27
2944 3562 7.825681 TGTAAACCATTTGACCATATGTTGAG 58.174 34.615 1.24 0.00 0.00 3.02
2945 3563 7.767250 TGTAAACCATTTGACCATATGTTGA 57.233 32.000 1.24 0.00 0.00 3.18
2946 3564 8.238481 GTTGTAAACCATTTGACCATATGTTG 57.762 34.615 1.24 0.00 42.21 3.33
2965 3583 8.875803 CGCAACAGATTATAAACTAGGTTGTAA 58.124 33.333 18.74 11.58 37.34 2.41
2966 3584 7.493320 CCGCAACAGATTATAAACTAGGTTGTA 59.507 37.037 18.74 0.00 37.34 2.41
2967 3585 6.315393 CCGCAACAGATTATAAACTAGGTTGT 59.685 38.462 18.74 0.00 37.34 3.32
2968 3586 6.537301 TCCGCAACAGATTATAAACTAGGTTG 59.463 38.462 15.76 15.76 37.88 3.77
2969 3587 6.646267 TCCGCAACAGATTATAAACTAGGTT 58.354 36.000 0.00 0.00 0.00 3.50
2970 3588 6.229936 TCCGCAACAGATTATAAACTAGGT 57.770 37.500 0.00 0.00 0.00 3.08
2971 3589 7.307989 CCAATCCGCAACAGATTATAAACTAGG 60.308 40.741 0.00 0.00 32.70 3.02
2972 3590 7.576236 CCAATCCGCAACAGATTATAAACTAG 58.424 38.462 0.00 0.00 32.70 2.57
2973 3591 6.017440 GCCAATCCGCAACAGATTATAAACTA 60.017 38.462 0.00 0.00 32.70 2.24
2974 3592 5.221048 GCCAATCCGCAACAGATTATAAACT 60.221 40.000 0.00 0.00 32.70 2.66
2975 3593 4.976116 GCCAATCCGCAACAGATTATAAAC 59.024 41.667 0.00 0.00 32.70 2.01
2976 3594 4.037446 GGCCAATCCGCAACAGATTATAAA 59.963 41.667 0.00 0.00 32.70 1.40
2977 3595 3.568007 GGCCAATCCGCAACAGATTATAA 59.432 43.478 0.00 0.00 32.70 0.98
2978 3596 3.146066 GGCCAATCCGCAACAGATTATA 58.854 45.455 0.00 0.00 32.70 0.98
2979 3597 1.956477 GGCCAATCCGCAACAGATTAT 59.044 47.619 0.00 0.00 32.70 1.28
2980 3598 1.064758 AGGCCAATCCGCAACAGATTA 60.065 47.619 5.01 0.00 40.77 1.75
2981 3599 0.323725 AGGCCAATCCGCAACAGATT 60.324 50.000 5.01 0.00 40.77 2.40
2982 3600 0.546122 TAGGCCAATCCGCAACAGAT 59.454 50.000 5.01 0.00 40.77 2.90
2983 3601 0.326595 TTAGGCCAATCCGCAACAGA 59.673 50.000 5.01 0.00 40.77 3.41
2984 3602 0.451783 GTTAGGCCAATCCGCAACAG 59.548 55.000 5.01 0.00 40.77 3.16
2985 3603 1.302383 CGTTAGGCCAATCCGCAACA 61.302 55.000 5.01 0.00 40.77 3.33
2986 3604 1.022451 TCGTTAGGCCAATCCGCAAC 61.022 55.000 5.01 0.00 40.77 4.17
2987 3605 0.107410 ATCGTTAGGCCAATCCGCAA 60.107 50.000 5.01 0.00 40.77 4.85
2988 3606 0.753867 TATCGTTAGGCCAATCCGCA 59.246 50.000 5.01 0.00 40.77 5.69
2989 3607 1.873698 TTATCGTTAGGCCAATCCGC 58.126 50.000 5.01 0.00 40.77 5.54
2990 3608 3.659786 TCATTATCGTTAGGCCAATCCG 58.340 45.455 5.01 0.99 40.77 4.18
2991 3609 5.305585 TCTTCATTATCGTTAGGCCAATCC 58.694 41.667 5.01 0.00 0.00 3.01
2992 3610 6.650807 TGATCTTCATTATCGTTAGGCCAATC 59.349 38.462 5.01 0.00 0.00 2.67
2993 3611 6.428159 GTGATCTTCATTATCGTTAGGCCAAT 59.572 38.462 5.01 0.00 0.00 3.16
2994 3612 5.758296 GTGATCTTCATTATCGTTAGGCCAA 59.242 40.000 5.01 0.00 0.00 4.52
2995 3613 5.070446 AGTGATCTTCATTATCGTTAGGCCA 59.930 40.000 5.01 0.00 0.00 5.36
2996 3614 5.542779 AGTGATCTTCATTATCGTTAGGCC 58.457 41.667 0.00 0.00 0.00 5.19
2997 3615 7.594714 TCTAGTGATCTTCATTATCGTTAGGC 58.405 38.462 0.00 0.00 0.00 3.93
2998 3616 9.619316 CTTCTAGTGATCTTCATTATCGTTAGG 57.381 37.037 0.00 0.00 0.00 2.69
2999 3617 9.619316 CCTTCTAGTGATCTTCATTATCGTTAG 57.381 37.037 0.00 0.00 0.00 2.34
3000 3618 8.082852 GCCTTCTAGTGATCTTCATTATCGTTA 58.917 37.037 0.00 0.00 0.00 3.18
3001 3619 6.926272 GCCTTCTAGTGATCTTCATTATCGTT 59.074 38.462 0.00 0.00 0.00 3.85
3002 3620 6.266558 AGCCTTCTAGTGATCTTCATTATCGT 59.733 38.462 0.00 0.00 0.00 3.73
3003 3621 6.686630 AGCCTTCTAGTGATCTTCATTATCG 58.313 40.000 0.00 0.00 0.00 2.92
3004 3622 8.900983 AAAGCCTTCTAGTGATCTTCATTATC 57.099 34.615 0.00 0.00 0.00 1.75
3005 3623 9.995003 CTAAAGCCTTCTAGTGATCTTCATTAT 57.005 33.333 0.00 0.00 0.00 1.28
3006 3624 8.424918 CCTAAAGCCTTCTAGTGATCTTCATTA 58.575 37.037 0.00 0.00 0.00 1.90
3007 3625 7.278875 CCTAAAGCCTTCTAGTGATCTTCATT 58.721 38.462 0.00 0.00 0.00 2.57
3008 3626 6.183361 CCCTAAAGCCTTCTAGTGATCTTCAT 60.183 42.308 0.00 0.00 0.00 2.57
3009 3627 5.129485 CCCTAAAGCCTTCTAGTGATCTTCA 59.871 44.000 0.00 0.00 0.00 3.02
3010 3628 5.129650 ACCCTAAAGCCTTCTAGTGATCTTC 59.870 44.000 0.00 0.00 0.00 2.87
3011 3629 5.033522 ACCCTAAAGCCTTCTAGTGATCTT 58.966 41.667 0.00 0.00 0.00 2.40
3012 3630 4.625963 ACCCTAAAGCCTTCTAGTGATCT 58.374 43.478 0.00 0.00 0.00 2.75
3013 3631 5.104900 TGAACCCTAAAGCCTTCTAGTGATC 60.105 44.000 0.00 0.00 0.00 2.92
3014 3632 4.783227 TGAACCCTAAAGCCTTCTAGTGAT 59.217 41.667 0.00 0.00 0.00 3.06
3015 3633 4.164981 TGAACCCTAAAGCCTTCTAGTGA 58.835 43.478 0.00 0.00 0.00 3.41
3016 3634 4.553330 TGAACCCTAAAGCCTTCTAGTG 57.447 45.455 0.00 0.00 0.00 2.74
3017 3635 4.626529 GCATGAACCCTAAAGCCTTCTAGT 60.627 45.833 0.00 0.00 0.00 2.57
3018 3636 3.879892 GCATGAACCCTAAAGCCTTCTAG 59.120 47.826 0.00 0.00 0.00 2.43
3019 3637 3.371595 GGCATGAACCCTAAAGCCTTCTA 60.372 47.826 0.00 0.00 39.02 2.10
3020 3638 2.621668 GGCATGAACCCTAAAGCCTTCT 60.622 50.000 0.00 0.00 39.02 2.85
3021 3639 1.751351 GGCATGAACCCTAAAGCCTTC 59.249 52.381 0.00 0.00 39.02 3.46
3022 3640 1.852633 GGCATGAACCCTAAAGCCTT 58.147 50.000 0.00 0.00 39.02 4.35
3023 3641 1.002857 AGGCATGAACCCTAAAGCCT 58.997 50.000 0.00 0.00 46.89 4.58
3024 3642 1.064389 AGAGGCATGAACCCTAAAGCC 60.064 52.381 0.00 0.00 42.31 4.35
3025 3643 2.426842 AGAGGCATGAACCCTAAAGC 57.573 50.000 0.00 0.00 31.41 3.51
3026 3644 6.122277 TCATTTAGAGGCATGAACCCTAAAG 58.878 40.000 0.00 0.00 36.63 1.85
3058 3676 1.750682 GCGGGGAAAGATAAGGCACAT 60.751 52.381 0.00 0.00 0.00 3.21
3059 3677 0.393808 GCGGGGAAAGATAAGGCACA 60.394 55.000 0.00 0.00 0.00 4.57
3060 3678 1.101635 GGCGGGGAAAGATAAGGCAC 61.102 60.000 0.00 0.00 0.00 5.01
3061 3679 1.226262 GGCGGGGAAAGATAAGGCA 59.774 57.895 0.00 0.00 0.00 4.75
3062 3680 0.395173 TTGGCGGGGAAAGATAAGGC 60.395 55.000 0.00 0.00 0.00 4.35
3063 3681 2.364972 ATTGGCGGGGAAAGATAAGG 57.635 50.000 0.00 0.00 0.00 2.69
3064 3682 5.130350 TCTTTATTGGCGGGGAAAGATAAG 58.870 41.667 0.00 0.00 33.97 1.73
3065 3683 5.118729 TCTTTATTGGCGGGGAAAGATAA 57.881 39.130 0.00 0.00 33.97 1.75
3066 3684 4.781775 TCTTTATTGGCGGGGAAAGATA 57.218 40.909 0.00 0.00 33.97 1.98
3067 3685 3.662759 TCTTTATTGGCGGGGAAAGAT 57.337 42.857 0.00 0.00 33.97 2.40
3068 3686 3.662759 ATCTTTATTGGCGGGGAAAGA 57.337 42.857 6.26 6.26 40.98 2.52
3069 3687 4.278419 CCTAATCTTTATTGGCGGGGAAAG 59.722 45.833 0.00 0.00 0.00 2.62
3070 3688 4.079672 TCCTAATCTTTATTGGCGGGGAAA 60.080 41.667 0.00 0.00 0.00 3.13
3071 3689 3.460340 TCCTAATCTTTATTGGCGGGGAA 59.540 43.478 0.00 0.00 0.00 3.97
3072 3690 3.050089 TCCTAATCTTTATTGGCGGGGA 58.950 45.455 0.00 0.00 0.00 4.81
3073 3691 3.502123 TCCTAATCTTTATTGGCGGGG 57.498 47.619 0.00 0.00 0.00 5.73
3074 3692 5.123979 GCTAATCCTAATCTTTATTGGCGGG 59.876 44.000 0.00 0.00 0.00 6.13
3075 3693 5.705441 TGCTAATCCTAATCTTTATTGGCGG 59.295 40.000 0.00 0.00 38.29 6.13
3076 3694 6.801539 TGCTAATCCTAATCTTTATTGGCG 57.198 37.500 0.00 0.00 38.29 5.69
3077 3695 9.468532 CTTTTGCTAATCCTAATCTTTATTGGC 57.531 33.333 0.00 0.00 36.64 4.52
3078 3696 9.971922 CCTTTTGCTAATCCTAATCTTTATTGG 57.028 33.333 0.00 0.00 0.00 3.16
3079 3697 9.971922 CCCTTTTGCTAATCCTAATCTTTATTG 57.028 33.333 0.00 0.00 0.00 1.90
3080 3698 9.936329 TCCCTTTTGCTAATCCTAATCTTTATT 57.064 29.630 0.00 0.00 0.00 1.40
3081 3699 9.579932 CTCCCTTTTGCTAATCCTAATCTTTAT 57.420 33.333 0.00 0.00 0.00 1.40
3082 3700 7.998964 CCTCCCTTTTGCTAATCCTAATCTTTA 59.001 37.037 0.00 0.00 0.00 1.85
3083 3701 6.836007 CCTCCCTTTTGCTAATCCTAATCTTT 59.164 38.462 0.00 0.00 0.00 2.52
3084 3702 6.368805 CCTCCCTTTTGCTAATCCTAATCTT 58.631 40.000 0.00 0.00 0.00 2.40
3085 3703 5.691436 GCCTCCCTTTTGCTAATCCTAATCT 60.691 44.000 0.00 0.00 0.00 2.40
3086 3704 4.520874 GCCTCCCTTTTGCTAATCCTAATC 59.479 45.833 0.00 0.00 0.00 1.75
3087 3705 4.474394 GCCTCCCTTTTGCTAATCCTAAT 58.526 43.478 0.00 0.00 0.00 1.73
3088 3706 3.372675 GGCCTCCCTTTTGCTAATCCTAA 60.373 47.826 0.00 0.00 0.00 2.69
3089 3707 2.174854 GGCCTCCCTTTTGCTAATCCTA 59.825 50.000 0.00 0.00 0.00 2.94
3090 3708 1.063642 GGCCTCCCTTTTGCTAATCCT 60.064 52.381 0.00 0.00 0.00 3.24
3091 3709 1.403814 GGCCTCCCTTTTGCTAATCC 58.596 55.000 0.00 0.00 0.00 3.01
3092 3710 1.341976 TGGGCCTCCCTTTTGCTAATC 60.342 52.381 4.53 0.00 45.70 1.75
3093 3711 0.709992 TGGGCCTCCCTTTTGCTAAT 59.290 50.000 4.53 0.00 45.70 1.73
3094 3712 0.485099 TTGGGCCTCCCTTTTGCTAA 59.515 50.000 4.53 0.00 45.70 3.09
3095 3713 0.485099 TTTGGGCCTCCCTTTTGCTA 59.515 50.000 4.53 0.00 45.70 3.49
3096 3714 0.399806 TTTTGGGCCTCCCTTTTGCT 60.400 50.000 4.53 0.00 45.70 3.91
3097 3715 0.035317 CTTTTGGGCCTCCCTTTTGC 59.965 55.000 4.53 0.00 45.70 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.