Multiple sequence alignment - TraesCS4B01G019100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G019100 chr4B 100.000 6413 0 0 1 6413 13982662 13976250 0.000000e+00 11843.0
1 TraesCS4B01G019100 chr4B 87.289 653 71 6 1 643 553919070 553918420 0.000000e+00 736.0
2 TraesCS4B01G019100 chr4B 92.000 75 5 1 5168 5242 629777202 629777275 3.160000e-18 104.0
3 TraesCS4B01G019100 chr4D 88.474 2438 138 47 814 3177 7752909 7755277 0.000000e+00 2813.0
4 TraesCS4B01G019100 chr4D 91.894 1135 48 9 3272 4389 7755604 7756711 0.000000e+00 1546.0
5 TraesCS4B01G019100 chr4D 90.534 1162 72 20 5267 6413 7757619 7758757 0.000000e+00 1502.0
6 TraesCS4B01G019100 chr4D 91.845 748 35 4 4393 5117 7756756 7757500 0.000000e+00 1020.0
7 TraesCS4B01G019100 chr4D 94.898 98 4 1 3177 3273 7755469 7755566 1.110000e-32 152.0
8 TraesCS4B01G019100 chr4A 95.030 1167 47 8 5249 6413 595847536 595846379 0.000000e+00 1823.0
9 TraesCS4B01G019100 chr4A 88.331 1534 95 40 721 2219 595853052 595851568 0.000000e+00 1764.0
10 TraesCS4B01G019100 chr4A 91.507 942 43 17 2262 3178 595851568 595850639 0.000000e+00 1262.0
11 TraesCS4B01G019100 chr4A 92.317 794 42 4 3177 3968 595850448 595849672 0.000000e+00 1110.0
12 TraesCS4B01G019100 chr4A 87.538 658 70 6 3 648 541034800 541035457 0.000000e+00 750.0
13 TraesCS4B01G019100 chr4A 92.874 435 29 2 3965 4399 595849070 595848638 1.170000e-176 630.0
14 TraesCS4B01G019100 chr4A 88.344 489 33 2 4387 4853 595848602 595848116 3.360000e-157 566.0
15 TraesCS4B01G019100 chr4A 95.848 289 11 1 4833 5120 595847938 595847650 3.500000e-127 466.0
16 TraesCS4B01G019100 chr3D 91.006 656 50 3 2 648 170548906 170549561 0.000000e+00 876.0
17 TraesCS4B01G019100 chr3D 89.482 656 60 4 2 648 520675618 520674963 0.000000e+00 821.0
18 TraesCS4B01G019100 chr3D 89.602 654 56 5 2 644 601219914 601220566 0.000000e+00 821.0
19 TraesCS4B01G019100 chr7B 88.889 657 59 7 2 648 244746396 244747048 0.000000e+00 797.0
20 TraesCS4B01G019100 chr6A 87.771 646 66 7 12 648 585793544 585792903 0.000000e+00 743.0
21 TraesCS4B01G019100 chr2B 87.234 658 72 6 1 648 75839159 75839814 0.000000e+00 739.0
22 TraesCS4B01G019100 chr2B 95.238 63 3 0 5180 5242 207720313 207720375 4.090000e-17 100.0
23 TraesCS4B01G019100 chr2B 95.238 63 3 0 5180 5242 207737526 207737588 4.090000e-17 100.0
24 TraesCS4B01G019100 chr2B 92.647 68 5 0 5175 5242 684812067 684812000 1.470000e-16 99.0
25 TraesCS4B01G019100 chr7A 87.328 655 69 8 2 642 736282650 736283304 0.000000e+00 737.0
26 TraesCS4B01G019100 chr5B 94.366 71 2 2 5174 5242 262818712 262818642 2.440000e-19 108.0
27 TraesCS4B01G019100 chr5B 96.825 63 2 0 5180 5242 24915477 24915415 8.790000e-19 106.0
28 TraesCS4B01G019100 chr5B 92.537 67 4 1 5177 5242 654769564 654769498 1.900000e-15 95.3
29 TraesCS4B01G019100 chr5B 85.057 87 12 1 2988 3073 13714789 13714703 3.190000e-13 87.9
30 TraesCS4B01G019100 chrUn 92.000 75 5 1 5168 5242 2428138 2428211 3.160000e-18 104.0
31 TraesCS4B01G019100 chr2A 94.030 67 3 1 5176 5242 613335513 613335578 4.090000e-17 100.0
32 TraesCS4B01G019100 chr5D 85.057 87 12 1 2988 3073 14975556 14975470 3.190000e-13 87.9
33 TraesCS4B01G019100 chr5A 85.057 87 12 1 2988 3073 11531718 11531632 3.190000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G019100 chr4B 13976250 13982662 6412 True 11843.000000 11843 100.000000 1 6413 1 chr4B.!!$R1 6412
1 TraesCS4B01G019100 chr4B 553918420 553919070 650 True 736.000000 736 87.289000 1 643 1 chr4B.!!$R2 642
2 TraesCS4B01G019100 chr4D 7752909 7758757 5848 False 1406.600000 2813 91.529000 814 6413 5 chr4D.!!$F1 5599
3 TraesCS4B01G019100 chr4A 595846379 595853052 6673 True 1088.714286 1823 92.035857 721 6413 7 chr4A.!!$R1 5692
4 TraesCS4B01G019100 chr4A 541034800 541035457 657 False 750.000000 750 87.538000 3 648 1 chr4A.!!$F1 645
5 TraesCS4B01G019100 chr3D 170548906 170549561 655 False 876.000000 876 91.006000 2 648 1 chr3D.!!$F1 646
6 TraesCS4B01G019100 chr3D 520674963 520675618 655 True 821.000000 821 89.482000 2 648 1 chr3D.!!$R1 646
7 TraesCS4B01G019100 chr3D 601219914 601220566 652 False 821.000000 821 89.602000 2 644 1 chr3D.!!$F2 642
8 TraesCS4B01G019100 chr7B 244746396 244747048 652 False 797.000000 797 88.889000 2 648 1 chr7B.!!$F1 646
9 TraesCS4B01G019100 chr6A 585792903 585793544 641 True 743.000000 743 87.771000 12 648 1 chr6A.!!$R1 636
10 TraesCS4B01G019100 chr2B 75839159 75839814 655 False 739.000000 739 87.234000 1 648 1 chr2B.!!$F1 647
11 TraesCS4B01G019100 chr7A 736282650 736283304 654 False 737.000000 737 87.328000 2 642 1 chr7A.!!$F1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 726 0.030235 GTCCCAAAACAAGTGTCGCC 59.970 55.000 0.00 0.0 0.0 5.54 F
910 933 0.179215 GAGAAGCGCATTTCACACGG 60.179 55.000 11.47 0.0 0.0 4.94 F
1739 1819 0.320374 TTCCAGGCAAGTCGTCGATT 59.680 50.000 0.00 0.0 0.0 3.34 F
3125 3278 0.108186 CATGTCCGCTCAGCCTGTAA 60.108 55.000 0.00 0.0 0.0 2.41 F
3128 3281 1.003118 TGTCCGCTCAGCCTGTAAATT 59.997 47.619 0.00 0.0 0.0 1.82 F
4875 6149 0.830648 CGGAGGGAGTATGGAAGCAA 59.169 55.000 0.00 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 2321 0.251742 CCCATTGCTTCCCTCCACAA 60.252 55.000 0.0 0.0 0.00 3.33 R
2240 2326 0.613012 AACTGCCCATTGCTTCCCTC 60.613 55.000 0.0 0.0 42.00 4.30 R
3345 3730 2.151502 TTCTGGTTTCCTGCACCAAA 57.848 45.000 0.0 0.0 43.96 3.28 R
4854 6128 0.389757 GCTTCCATACTCCCTCCGTC 59.610 60.000 0.0 0.0 0.00 4.79 R
4929 6203 2.500229 ACACCCACATCAAGTAAACCG 58.500 47.619 0.0 0.0 0.00 4.44 R
6177 7549 0.031178 CTTGCTTGGTGTTCCTGCAC 59.969 55.000 0.0 0.0 40.89 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
189 193 1.579429 GATGGTCGTTGGTGGTTGC 59.421 57.895 0.00 0.00 0.00 4.17
192 196 2.589442 GTCGTTGGTGGTTGCCGA 60.589 61.111 0.00 0.00 0.00 5.54
202 206 0.618458 TGGTTGCCGAAGCTAGGATT 59.382 50.000 11.92 0.00 40.80 3.01
281 286 2.029666 GCAGCGTCTGTGGACACT 59.970 61.111 3.91 0.00 42.21 3.55
413 425 3.559171 GCACCATCTTGGAGTCCTTGTTA 60.559 47.826 11.33 0.00 40.96 2.41
423 435 4.202101 TGGAGTCCTTGTTACGTCGTTTTA 60.202 41.667 11.33 0.00 0.00 1.52
456 468 1.000771 TCGGAGGACTGGAGGTCTG 60.001 63.158 0.00 0.00 43.97 3.51
487 500 1.665916 CGGATCATCCTCGCGCATT 60.666 57.895 8.75 0.00 33.30 3.56
494 507 2.100087 TCATCCTCGCGCATTTGTAGTA 59.900 45.455 8.75 0.00 0.00 1.82
501 514 1.531883 GCGCATTTGTAGTAGCTTGGC 60.532 52.381 0.30 0.00 0.00 4.52
519 533 1.145156 CAGTCGTTGGGTGGTGTGA 59.855 57.895 0.00 0.00 0.00 3.58
546 560 1.561076 TCAGCACCCATGTATCTTGCT 59.439 47.619 0.00 0.00 44.35 3.91
562 578 0.322906 TGCTTTGGGTGTGTGTGTCA 60.323 50.000 0.00 0.00 0.00 3.58
575 591 0.543749 TGTGTCATGTGTGGTGGTGA 59.456 50.000 0.00 0.00 0.00 4.02
601 617 5.347635 GTGAGTTTGTATCGTGATGCTTGTA 59.652 40.000 0.00 0.00 0.00 2.41
610 626 2.479560 CGTGATGCTTGTAGATCGGTGA 60.480 50.000 0.00 0.00 0.00 4.02
635 655 7.826918 TTTATATATAAAGCGGGGCAAAAGT 57.173 32.000 12.90 0.00 0.00 2.66
648 668 5.621329 CGGGGCAAAAGTCTTTTTCGATAAT 60.621 40.000 7.87 0.00 34.34 1.28
649 669 6.163476 GGGGCAAAAGTCTTTTTCGATAATT 58.837 36.000 7.87 0.00 34.34 1.40
650 670 6.649141 GGGGCAAAAGTCTTTTTCGATAATTT 59.351 34.615 7.87 0.00 34.34 1.82
651 671 7.815549 GGGGCAAAAGTCTTTTTCGATAATTTA 59.184 33.333 7.87 0.00 34.34 1.40
652 672 8.860128 GGGCAAAAGTCTTTTTCGATAATTTAG 58.140 33.333 7.87 0.00 34.34 1.85
653 673 9.620660 GGCAAAAGTCTTTTTCGATAATTTAGA 57.379 29.630 7.87 0.00 34.34 2.10
676 696 8.992835 AGAACGAAAAGAATAATACTTACCGT 57.007 30.769 0.00 0.00 37.23 4.83
679 699 9.638239 AACGAAAAGAATAATACTTACCGTACA 57.362 29.630 0.00 0.00 35.90 2.90
680 700 9.076596 ACGAAAAGAATAATACTTACCGTACAC 57.923 33.333 0.00 0.00 35.53 2.90
681 701 9.294030 CGAAAAGAATAATACTTACCGTACACT 57.706 33.333 0.00 0.00 0.00 3.55
683 703 9.591792 AAAAGAATAATACTTACCGTACACTCC 57.408 33.333 0.00 0.00 0.00 3.85
684 704 7.282332 AGAATAATACTTACCGTACACTCCC 57.718 40.000 0.00 0.00 0.00 4.30
685 705 6.266330 AGAATAATACTTACCGTACACTCCCC 59.734 42.308 0.00 0.00 0.00 4.81
686 706 2.143876 TACTTACCGTACACTCCCCC 57.856 55.000 0.00 0.00 0.00 5.40
687 707 0.967380 ACTTACCGTACACTCCCCCG 60.967 60.000 0.00 0.00 0.00 5.73
688 708 0.967380 CTTACCGTACACTCCCCCGT 60.967 60.000 0.00 0.00 0.00 5.28
689 709 0.965363 TTACCGTACACTCCCCCGTC 60.965 60.000 0.00 0.00 0.00 4.79
690 710 2.837031 TACCGTACACTCCCCCGTCC 62.837 65.000 0.00 0.00 0.00 4.79
691 711 3.455469 CGTACACTCCCCCGTCCC 61.455 72.222 0.00 0.00 0.00 4.46
692 712 2.284112 GTACACTCCCCCGTCCCA 60.284 66.667 0.00 0.00 0.00 4.37
693 713 1.914764 GTACACTCCCCCGTCCCAA 60.915 63.158 0.00 0.00 0.00 4.12
694 714 1.152074 TACACTCCCCCGTCCCAAA 60.152 57.895 0.00 0.00 0.00 3.28
695 715 0.767446 TACACTCCCCCGTCCCAAAA 60.767 55.000 0.00 0.00 0.00 2.44
696 716 1.602605 CACTCCCCCGTCCCAAAAC 60.603 63.158 0.00 0.00 0.00 2.43
697 717 2.079911 ACTCCCCCGTCCCAAAACA 61.080 57.895 0.00 0.00 0.00 2.83
698 718 1.151908 CTCCCCCGTCCCAAAACAA 59.848 57.895 0.00 0.00 0.00 2.83
699 719 0.893727 CTCCCCCGTCCCAAAACAAG 60.894 60.000 0.00 0.00 0.00 3.16
700 720 1.152631 CCCCCGTCCCAAAACAAGT 60.153 57.895 0.00 0.00 0.00 3.16
701 721 1.460273 CCCCCGTCCCAAAACAAGTG 61.460 60.000 0.00 0.00 0.00 3.16
702 722 0.753848 CCCCGTCCCAAAACAAGTGT 60.754 55.000 0.00 0.00 0.00 3.55
703 723 0.666374 CCCGTCCCAAAACAAGTGTC 59.334 55.000 0.00 0.00 0.00 3.67
704 724 0.306533 CCGTCCCAAAACAAGTGTCG 59.693 55.000 0.00 0.00 0.00 4.35
705 725 0.316689 CGTCCCAAAACAAGTGTCGC 60.317 55.000 0.00 0.00 0.00 5.19
706 726 0.030235 GTCCCAAAACAAGTGTCGCC 59.970 55.000 0.00 0.00 0.00 5.54
707 727 1.008995 CCCAAAACAAGTGTCGCCG 60.009 57.895 0.00 0.00 0.00 6.46
708 728 1.440938 CCCAAAACAAGTGTCGCCGA 61.441 55.000 0.00 0.00 0.00 5.54
709 729 0.316689 CCAAAACAAGTGTCGCCGAC 60.317 55.000 10.96 10.96 0.00 4.79
710 730 0.655733 CAAAACAAGTGTCGCCGACT 59.344 50.000 19.12 0.00 33.15 4.18
711 731 1.063469 CAAAACAAGTGTCGCCGACTT 59.937 47.619 19.12 2.05 33.82 3.01
712 732 2.228138 AAACAAGTGTCGCCGACTTA 57.772 45.000 19.12 0.00 32.27 2.24
713 733 1.779569 AACAAGTGTCGCCGACTTAG 58.220 50.000 19.12 8.22 32.27 2.18
714 734 0.672342 ACAAGTGTCGCCGACTTAGT 59.328 50.000 19.12 8.85 32.27 2.24
715 735 1.881973 ACAAGTGTCGCCGACTTAGTA 59.118 47.619 19.12 0.00 32.27 1.82
716 736 2.248487 CAAGTGTCGCCGACTTAGTAC 58.752 52.381 19.12 7.66 32.27 2.73
717 737 1.527034 AGTGTCGCCGACTTAGTACA 58.473 50.000 19.12 0.00 33.15 2.90
718 738 1.881973 AGTGTCGCCGACTTAGTACAA 59.118 47.619 19.12 0.00 33.15 2.41
719 739 1.981533 GTGTCGCCGACTTAGTACAAC 59.018 52.381 19.12 1.44 33.15 3.32
720 740 1.881973 TGTCGCCGACTTAGTACAACT 59.118 47.619 19.12 0.00 33.15 3.16
721 741 2.294233 TGTCGCCGACTTAGTACAACTT 59.706 45.455 19.12 0.00 33.15 2.66
722 742 2.660236 GTCGCCGACTTAGTACAACTTG 59.340 50.000 10.56 0.00 0.00 3.16
723 743 1.990563 CGCCGACTTAGTACAACTTGG 59.009 52.381 0.00 0.00 0.00 3.61
724 744 2.344025 GCCGACTTAGTACAACTTGGG 58.656 52.381 0.00 0.00 0.00 4.12
725 745 2.028748 GCCGACTTAGTACAACTTGGGA 60.029 50.000 0.00 0.00 0.00 4.37
731 751 4.225267 ACTTAGTACAACTTGGGATGGAGG 59.775 45.833 0.00 0.00 0.00 4.30
738 758 4.292306 ACAACTTGGGATGGAGGAAGTATT 59.708 41.667 0.00 0.00 0.00 1.89
777 797 4.439305 TCTCTTTGAAATGGGAAATGCG 57.561 40.909 0.00 0.00 0.00 4.73
778 798 3.193267 TCTCTTTGAAATGGGAAATGCGG 59.807 43.478 0.00 0.00 0.00 5.69
806 826 1.498865 CGAGCAGCGAAGGTTTGTGT 61.499 55.000 0.00 0.00 44.57 3.72
808 828 1.065551 GAGCAGCGAAGGTTTGTGTTT 59.934 47.619 0.00 0.00 33.74 2.83
809 829 1.199624 GCAGCGAAGGTTTGTGTTTG 58.800 50.000 0.00 0.00 33.74 2.93
810 830 1.202245 GCAGCGAAGGTTTGTGTTTGA 60.202 47.619 0.00 0.00 33.74 2.69
811 831 2.719798 CAGCGAAGGTTTGTGTTTGAG 58.280 47.619 0.00 0.00 33.74 3.02
812 832 2.097466 CAGCGAAGGTTTGTGTTTGAGT 59.903 45.455 0.00 0.00 33.74 3.41
855 875 2.534042 TACAGCTCTACAAGGGCTCT 57.466 50.000 0.00 0.00 33.74 4.09
858 878 1.410882 CAGCTCTACAAGGGCTCTACC 59.589 57.143 0.00 0.00 33.74 3.18
910 933 0.179215 GAGAAGCGCATTTCACACGG 60.179 55.000 11.47 0.00 0.00 4.94
1119 1153 4.047822 GACTGGATCTTGATCGCTACTTG 58.952 47.826 4.75 0.00 0.00 3.16
1120 1154 3.181471 ACTGGATCTTGATCGCTACTTGG 60.181 47.826 4.75 0.00 0.00 3.61
1121 1155 3.031013 TGGATCTTGATCGCTACTTGGA 58.969 45.455 4.75 0.00 0.00 3.53
1122 1156 3.068732 TGGATCTTGATCGCTACTTGGAG 59.931 47.826 4.75 0.00 0.00 3.86
1123 1157 3.068873 GGATCTTGATCGCTACTTGGAGT 59.931 47.826 4.75 0.00 0.00 3.85
1124 1158 4.442192 GGATCTTGATCGCTACTTGGAGTT 60.442 45.833 4.75 0.00 0.00 3.01
1125 1159 5.221263 GGATCTTGATCGCTACTTGGAGTTA 60.221 44.000 4.75 0.00 0.00 2.24
1126 1160 4.995124 TCTTGATCGCTACTTGGAGTTAC 58.005 43.478 0.00 0.00 0.00 2.50
1127 1161 4.705507 TCTTGATCGCTACTTGGAGTTACT 59.294 41.667 0.00 0.00 0.00 2.24
1134 1168 5.587844 TCGCTACTTGGAGTTACTTAGTAGG 59.412 44.000 20.83 14.95 38.97 3.18
1138 1172 6.837471 ACTTGGAGTTACTTAGTAGGAGTG 57.163 41.667 0.00 0.00 0.00 3.51
1150 1185 3.358118 AGTAGGAGTGTCTGGCTAGTTC 58.642 50.000 0.00 0.00 0.00 3.01
1159 1194 2.234908 GTCTGGCTAGTTCTGGTGTGAT 59.765 50.000 0.00 0.00 0.00 3.06
1192 1227 1.089481 TGCTCCCGATCGCATGTTTC 61.089 55.000 10.32 0.00 0.00 2.78
1207 1243 6.638063 TCGCATGTTTCTCTTGAATCTTTTTG 59.362 34.615 0.00 0.00 31.56 2.44
1208 1244 6.638063 CGCATGTTTCTCTTGAATCTTTTTGA 59.362 34.615 0.00 0.00 31.56 2.69
1231 1267 1.131126 GGTCGAGTGCACAATTGATGG 59.869 52.381 21.04 2.32 0.00 3.51
1249 1285 1.291877 GGTGGTGTCGCTGCTGTTAG 61.292 60.000 0.00 0.00 0.00 2.34
1274 1310 7.067615 AGGACGGCTGATAATATCATGTAGTAG 59.932 40.741 3.12 0.00 38.85 2.57
1275 1311 7.148052 GGACGGCTGATAATATCATGTAGTAGT 60.148 40.741 3.12 0.00 38.85 2.73
1292 1333 8.420374 TGTAGTAGTAAGATTATGTTTGCTGC 57.580 34.615 0.00 0.00 0.00 5.25
1305 1346 1.308069 TTGCTGCGGAATTCTCCAGC 61.308 55.000 28.34 28.34 42.58 4.85
1356 1414 2.187599 CTTTTTCAGTCAGGGGCGCG 62.188 60.000 0.00 0.00 0.00 6.86
1377 1435 5.000012 CGGAGCTTGTTCTTAGATACTGT 58.000 43.478 0.00 0.00 0.00 3.55
1378 1436 5.411781 CGGAGCTTGTTCTTAGATACTGTT 58.588 41.667 0.00 0.00 0.00 3.16
1379 1437 6.561614 CGGAGCTTGTTCTTAGATACTGTTA 58.438 40.000 0.00 0.00 0.00 2.41
1402 1461 0.763223 ACTCTTGTCTTCGGGGGTGT 60.763 55.000 0.00 0.00 0.00 4.16
1409 1468 1.471287 GTCTTCGGGGGTGTAAAATGC 59.529 52.381 0.00 0.00 0.00 3.56
1413 1472 1.004862 TCGGGGGTGTAAAATGCATGA 59.995 47.619 0.00 0.00 0.00 3.07
1420 1479 5.450965 GGGGTGTAAAATGCATGAGAAGATG 60.451 44.000 0.00 0.00 0.00 2.90
1423 1482 6.032094 GTGTAAAATGCATGAGAAGATGTGG 58.968 40.000 0.00 0.00 0.00 4.17
1436 1495 8.868522 TGAGAAGATGTGGTCATTAATTTCTT 57.131 30.769 0.00 0.00 34.06 2.52
1476 1535 3.256383 TCTCACAAGCATGGTGATTTTGG 59.744 43.478 0.00 0.00 0.00 3.28
1505 1564 9.123902 TCATAAATGTTTCCCAGTTCATATCTG 57.876 33.333 0.00 0.00 32.74 2.90
1558 1617 2.750948 TCGCTAAATTATGTCCCGAGC 58.249 47.619 0.00 0.00 0.00 5.03
1593 1671 5.925397 TGTGAAACATATTGATTTTGCGCTT 59.075 32.000 9.73 0.00 45.67 4.68
1604 1682 6.252967 TGATTTTGCGCTTTTAGAATCTCA 57.747 33.333 9.73 0.00 0.00 3.27
1611 1689 4.380531 CGCTTTTAGAATCTCATGGGCTA 58.619 43.478 0.00 0.00 0.00 3.93
1639 1717 1.201921 CCGATGTTTTACTGTGCTCGC 60.202 52.381 0.00 0.00 0.00 5.03
1739 1819 0.320374 TTCCAGGCAAGTCGTCGATT 59.680 50.000 0.00 0.00 0.00 3.34
1745 1825 1.668919 GGCAAGTCGTCGATTCACTCA 60.669 52.381 0.00 0.00 0.00 3.41
1748 1828 3.241804 GCAAGTCGTCGATTCACTCATTC 60.242 47.826 0.00 0.00 0.00 2.67
1857 1939 4.802999 CTTTCTTCTCTCAAACATTGGCC 58.197 43.478 0.00 0.00 0.00 5.36
1896 1978 7.942341 ACTGTTAAGTTTGAAATCTGGGATACA 59.058 33.333 0.00 0.00 31.54 2.29
2012 2094 7.666623 AGTAAAATGGAATTGGTTTACCTGTG 58.333 34.615 0.00 0.00 36.10 3.66
2018 2100 2.445682 TTGGTTTACCTGTGCCAGTT 57.554 45.000 0.00 0.00 36.82 3.16
2032 2114 7.230712 ACCTGTGCCAGTTATAAAATAATAGGC 59.769 37.037 13.83 13.83 39.95 3.93
2045 2127 5.552870 AATAATAGGCCTCGATGACAGTT 57.447 39.130 9.68 0.00 0.00 3.16
2049 2131 0.744771 GGCCTCGATGACAGTTTCCC 60.745 60.000 0.00 0.00 0.00 3.97
2050 2132 1.084370 GCCTCGATGACAGTTTCCCG 61.084 60.000 0.00 0.00 0.00 5.14
2061 2143 7.223193 CGATGACAGTTTCCCGTTATTTACATA 59.777 37.037 0.00 0.00 0.00 2.29
2066 2148 8.833493 ACAGTTTCCCGTTATTTACATATTAGC 58.167 33.333 0.00 0.00 0.00 3.09
2077 2159 1.949525 ACATATTAGCTGCTTTGGCCG 59.050 47.619 7.79 0.00 37.74 6.13
2170 2252 5.353394 ACCAAGAATAATTGTAGCGGAGA 57.647 39.130 0.00 0.00 0.00 3.71
2197 2283 2.644798 AGTCAGGCAAGGTAGTTTCCAT 59.355 45.455 0.00 0.00 0.00 3.41
2218 2304 5.178252 CCATATGGCGTGATTTAGTTCTCAG 59.822 44.000 9.29 0.00 0.00 3.35
2219 2305 3.953712 TGGCGTGATTTAGTTCTCAGA 57.046 42.857 0.00 0.00 0.00 3.27
2220 2306 4.265904 TGGCGTGATTTAGTTCTCAGAA 57.734 40.909 0.00 0.00 0.00 3.02
2221 2307 3.994392 TGGCGTGATTTAGTTCTCAGAAC 59.006 43.478 9.78 9.78 0.00 3.01
2222 2308 3.994392 GGCGTGATTTAGTTCTCAGAACA 59.006 43.478 19.89 3.11 0.00 3.18
2223 2309 4.143094 GGCGTGATTTAGTTCTCAGAACAC 60.143 45.833 19.89 6.89 0.00 3.32
2224 2310 4.143094 GCGTGATTTAGTTCTCAGAACACC 60.143 45.833 19.89 4.37 0.00 4.16
2225 2311 5.230942 CGTGATTTAGTTCTCAGAACACCT 58.769 41.667 19.89 1.63 0.00 4.00
2226 2312 5.696724 CGTGATTTAGTTCTCAGAACACCTT 59.303 40.000 19.89 1.25 0.00 3.50
2227 2313 6.202954 CGTGATTTAGTTCTCAGAACACCTTT 59.797 38.462 19.89 0.86 0.00 3.11
2228 2314 7.254795 CGTGATTTAGTTCTCAGAACACCTTTT 60.255 37.037 19.89 0.12 0.00 2.27
2229 2315 9.052759 GTGATTTAGTTCTCAGAACACCTTTTA 57.947 33.333 19.89 0.00 0.00 1.52
2230 2316 9.621629 TGATTTAGTTCTCAGAACACCTTTTAA 57.378 29.630 19.89 5.56 0.00 1.52
2238 2324 9.936759 TTCTCAGAACACCTTTTAAAAATTTGT 57.063 25.926 1.66 2.99 0.00 2.83
2239 2325 9.364989 TCTCAGAACACCTTTTAAAAATTTGTG 57.635 29.630 1.66 9.32 0.00 3.33
2240 2326 8.485976 TCAGAACACCTTTTAAAAATTTGTGG 57.514 30.769 16.98 10.49 0.00 4.17
2241 2327 8.314751 TCAGAACACCTTTTAAAAATTTGTGGA 58.685 29.630 16.98 10.21 0.00 4.02
2242 2328 8.603181 CAGAACACCTTTTAAAAATTTGTGGAG 58.397 33.333 16.98 9.49 0.00 3.86
2243 2329 7.768582 AGAACACCTTTTAAAAATTTGTGGAGG 59.231 33.333 16.98 8.87 0.00 4.30
2244 2330 6.353323 ACACCTTTTAAAAATTTGTGGAGGG 58.647 36.000 16.98 8.39 0.00 4.30
2245 2331 6.157123 ACACCTTTTAAAAATTTGTGGAGGGA 59.843 34.615 16.98 0.00 0.00 4.20
2246 2332 7.051000 CACCTTTTAAAAATTTGTGGAGGGAA 58.949 34.615 1.66 0.00 0.00 3.97
2247 2333 7.226523 CACCTTTTAAAAATTTGTGGAGGGAAG 59.773 37.037 1.66 0.00 0.00 3.46
2248 2334 6.204688 CCTTTTAAAAATTTGTGGAGGGAAGC 59.795 38.462 1.66 0.00 0.00 3.86
2249 2335 5.878406 TTAAAAATTTGTGGAGGGAAGCA 57.122 34.783 0.00 0.00 0.00 3.91
2250 2336 4.769345 AAAAATTTGTGGAGGGAAGCAA 57.231 36.364 0.00 0.00 0.00 3.91
2251 2337 4.980339 AAAATTTGTGGAGGGAAGCAAT 57.020 36.364 0.00 0.00 0.00 3.56
2252 2338 3.967332 AATTTGTGGAGGGAAGCAATG 57.033 42.857 0.00 0.00 0.00 2.82
2253 2339 1.631405 TTTGTGGAGGGAAGCAATGG 58.369 50.000 0.00 0.00 0.00 3.16
2254 2340 0.251742 TTGTGGAGGGAAGCAATGGG 60.252 55.000 0.00 0.00 0.00 4.00
2255 2341 2.054453 GTGGAGGGAAGCAATGGGC 61.054 63.158 0.00 0.00 45.30 5.36
2432 2554 3.876589 AACTGCAGGGTGCCGTACG 62.877 63.158 19.93 8.69 44.23 3.67
2620 2742 8.184192 TCTCTGAAAGTTTTGAGCTTTTAACAG 58.816 33.333 12.12 0.00 36.43 3.16
2642 2777 6.947158 ACAGACTTAAGTACTAGCTACTGGTT 59.053 38.462 8.42 0.00 35.70 3.67
2653 2788 5.661312 ACTAGCTACTGGTTGTTGATCCATA 59.339 40.000 0.00 0.00 33.01 2.74
2706 2850 7.336931 ACATGAGGTCAACAATCCATAGTTAAC 59.663 37.037 0.00 0.00 0.00 2.01
2708 2852 5.183228 AGGTCAACAATCCATAGTTAACGG 58.817 41.667 0.00 0.00 0.00 4.44
2709 2853 4.334481 GGTCAACAATCCATAGTTAACGGG 59.666 45.833 0.00 3.93 0.00 5.28
2710 2854 3.942748 TCAACAATCCATAGTTAACGGGC 59.057 43.478 0.00 0.00 0.00 6.13
2711 2855 3.637911 ACAATCCATAGTTAACGGGCA 57.362 42.857 0.00 0.00 0.00 5.36
2713 2857 4.532834 ACAATCCATAGTTAACGGGCAAT 58.467 39.130 0.00 0.00 0.00 3.56
2714 2858 4.338118 ACAATCCATAGTTAACGGGCAATG 59.662 41.667 0.00 6.12 0.00 2.82
2715 2859 3.916359 TCCATAGTTAACGGGCAATGA 57.084 42.857 0.00 0.00 0.00 2.57
2716 2860 4.431416 TCCATAGTTAACGGGCAATGAT 57.569 40.909 0.00 0.00 0.00 2.45
2738 2882 7.744733 TGATGGGCATTGATAATACTTAGTCA 58.255 34.615 0.00 0.00 0.00 3.41
2773 2917 7.166167 ACACGGTATTCCTCAAAATAGTTCTT 58.834 34.615 0.00 0.00 0.00 2.52
2817 2961 2.096819 TGGTGCTGTTTCAACGAGTTTC 59.903 45.455 0.00 0.00 0.00 2.78
2827 2971 8.068893 TGTTTCAACGAGTTTCTAGTTATCAC 57.931 34.615 0.00 0.00 28.91 3.06
2830 2974 4.367386 ACGAGTTTCTAGTTATCACGGG 57.633 45.455 0.00 0.00 0.00 5.28
2836 2980 3.657398 TCTAGTTATCACGGGACCTCA 57.343 47.619 0.00 0.00 0.00 3.86
2854 2998 5.316167 ACCTCATCTGTTTTAGCATGTTCA 58.684 37.500 0.00 0.00 0.00 3.18
2885 3029 1.325338 GCACTTTGTGTTTGCTGCTTG 59.675 47.619 0.00 0.00 35.75 4.01
2886 3030 2.609350 CACTTTGTGTTTGCTGCTTGT 58.391 42.857 0.00 0.00 0.00 3.16
2887 3031 3.768406 CACTTTGTGTTTGCTGCTTGTA 58.232 40.909 0.00 0.00 0.00 2.41
2888 3032 4.362279 CACTTTGTGTTTGCTGCTTGTAT 58.638 39.130 0.00 0.00 0.00 2.29
2994 3146 9.816787 ATCCCATTAAGGTTTCTTGTAACTTTA 57.183 29.630 0.00 0.00 34.59 1.85
2995 3147 9.816787 TCCCATTAAGGTTTCTTGTAACTTTAT 57.183 29.630 0.00 0.00 32.06 1.40
3119 3272 1.063174 GTTTGATCATGTCCGCTCAGC 59.937 52.381 0.00 0.00 0.00 4.26
3120 3273 0.462581 TTGATCATGTCCGCTCAGCC 60.463 55.000 0.00 0.00 0.00 4.85
3121 3274 1.332889 TGATCATGTCCGCTCAGCCT 61.333 55.000 0.00 0.00 0.00 4.58
3122 3275 0.879400 GATCATGTCCGCTCAGCCTG 60.879 60.000 0.00 0.00 0.00 4.85
3124 3277 0.970427 TCATGTCCGCTCAGCCTGTA 60.970 55.000 0.00 0.00 0.00 2.74
3125 3278 0.108186 CATGTCCGCTCAGCCTGTAA 60.108 55.000 0.00 0.00 0.00 2.41
3128 3281 1.003118 TGTCCGCTCAGCCTGTAAATT 59.997 47.619 0.00 0.00 0.00 1.82
3129 3282 1.398390 GTCCGCTCAGCCTGTAAATTG 59.602 52.381 0.00 0.00 0.00 2.32
3130 3283 1.003118 TCCGCTCAGCCTGTAAATTGT 59.997 47.619 0.00 0.00 0.00 2.71
3131 3284 2.235155 TCCGCTCAGCCTGTAAATTGTA 59.765 45.455 0.00 0.00 0.00 2.41
3132 3285 3.118408 TCCGCTCAGCCTGTAAATTGTAT 60.118 43.478 0.00 0.00 0.00 2.29
3133 3286 3.002656 CCGCTCAGCCTGTAAATTGTATG 59.997 47.826 0.00 0.00 0.00 2.39
3134 3287 3.002656 CGCTCAGCCTGTAAATTGTATGG 59.997 47.826 0.00 0.00 0.00 2.74
3261 3607 7.395772 TGTGCTTTTGGATCTGATTAATGGTAA 59.604 33.333 0.00 0.00 0.00 2.85
3309 3694 2.158827 GGGCCATGTGAAAGGTTTTGTT 60.159 45.455 4.39 0.00 0.00 2.83
3314 3699 5.355596 CCATGTGAAAGGTTTTGTTGCTTA 58.644 37.500 0.00 0.00 0.00 3.09
3352 3737 7.905604 ATTAATTTAGCCTTTTCTTTGGTGC 57.094 32.000 0.00 0.00 0.00 5.01
3438 3823 7.147532 GGGAGGTTCAAATAGAGGTATGTAGTT 60.148 40.741 0.00 0.00 0.00 2.24
3459 3844 4.589216 TCATTTTCTTCCTGGTTGCTTG 57.411 40.909 0.00 0.00 0.00 4.01
3460 3845 3.321682 TCATTTTCTTCCTGGTTGCTTGG 59.678 43.478 0.00 0.00 0.00 3.61
3581 3970 7.699566 TGGTGTTGTCAACTAGTAATTCAAAC 58.300 34.615 16.45 2.18 31.63 2.93
3630 4019 6.107343 GCACTATCAGCATCACATCATATCT 58.893 40.000 0.00 0.00 0.00 1.98
3631 4020 6.256104 GCACTATCAGCATCACATCATATCTC 59.744 42.308 0.00 0.00 0.00 2.75
3639 4028 8.657729 CAGCATCACATCATATCTCATTCTTAC 58.342 37.037 0.00 0.00 0.00 2.34
3698 4087 6.981762 AAATCTCTCTGTGAGCACATTAAG 57.018 37.500 3.49 3.19 42.38 1.85
3760 4149 7.027874 ACACAGAACCTTATAATTTGGAGGA 57.972 36.000 7.45 0.00 33.47 3.71
3790 4179 5.369685 TGATATTGCACGTTCACATTGTT 57.630 34.783 0.00 0.00 0.00 2.83
3857 4246 7.663081 ACATATCTGCTTTCTTTCTTGAAGACA 59.337 33.333 0.00 0.00 43.90 3.41
3924 4313 3.925913 CAGGGAATTTTACACATTTGCCG 59.074 43.478 0.00 0.00 35.03 5.69
3972 4966 4.082625 TGTTTCCTGCAGCATCTAAACATG 60.083 41.667 18.88 0.00 33.31 3.21
4048 5050 7.075121 CGTTCATGCTATCTGTTTTTGTGTAA 58.925 34.615 0.00 0.00 0.00 2.41
4050 5052 9.065871 GTTCATGCTATCTGTTTTTGTGTAATC 57.934 33.333 0.00 0.00 0.00 1.75
4054 5056 8.165239 TGCTATCTGTTTTTGTGTAATCTTGT 57.835 30.769 0.00 0.00 0.00 3.16
4116 5124 8.112822 TCCTACCAACCATTTCAAATGATAAGA 58.887 33.333 11.98 0.00 0.00 2.10
4117 5125 8.917088 CCTACCAACCATTTCAAATGATAAGAT 58.083 33.333 11.98 0.00 0.00 2.40
4208 5216 7.389053 CAGAGAGAAATTAGCACTAGTTTTGGT 59.611 37.037 0.00 0.00 0.00 3.67
4215 5223 8.816640 AATTAGCACTAGTTTTGGTGAAAATG 57.183 30.769 0.00 0.00 37.97 2.32
4217 5225 4.342092 AGCACTAGTTTTGGTGAAAATGCT 59.658 37.500 0.00 0.00 38.20 3.79
4220 5228 3.751479 AGTTTTGGTGAAAATGCTCCC 57.249 42.857 0.00 0.00 33.63 4.30
4249 5257 2.043227 AGCCCTTTCCTCCTCTAATCG 58.957 52.381 0.00 0.00 0.00 3.34
4255 5263 2.145397 TCCTCCTCTAATCGTGTGCT 57.855 50.000 0.00 0.00 0.00 4.40
4269 5277 2.095853 CGTGTGCTGGCTTAATTACCTG 59.904 50.000 0.00 0.00 0.00 4.00
4369 5377 3.945921 GGAAAGAAATCTAACGGAAGGGG 59.054 47.826 0.00 0.00 0.00 4.79
4429 5483 6.255670 CACTTCTCGTGCATTTGTAAGCTATA 59.744 38.462 0.00 0.00 36.72 1.31
4430 5484 6.986817 ACTTCTCGTGCATTTGTAAGCTATAT 59.013 34.615 0.00 0.00 0.00 0.86
4461 5515 5.537188 CTGACTAGCAGGGATTATGAAGTC 58.463 45.833 6.34 0.00 41.07 3.01
4493 5547 5.221126 GGATAGCTTGGTCATTTTCACATCC 60.221 44.000 0.00 0.00 0.00 3.51
4494 5548 2.489329 AGCTTGGTCATTTTCACATCCG 59.511 45.455 0.00 0.00 0.00 4.18
4514 5568 6.869315 TCCGTCTTTTCATGATTTGTACAA 57.131 33.333 3.59 3.59 0.00 2.41
4537 5591 1.969923 CATTTTGCCCAACCTGGAAGA 59.030 47.619 0.00 0.00 40.96 2.87
4548 5602 6.663734 CCCAACCTGGAAGAGATTAAACTAT 58.336 40.000 0.00 0.00 40.96 2.12
4561 5615 2.706339 AAACTATCCAGGCTGAGCTG 57.294 50.000 17.94 6.05 0.00 4.24
4577 5631 3.503363 TGAGCTGTTATTGGACAAAGCAG 59.497 43.478 0.00 8.54 0.00 4.24
4612 5666 1.448985 TTGGTATCAAAGCCTCACGC 58.551 50.000 0.00 0.00 37.98 5.34
4630 5684 1.860676 GCTCGACACACAGTTGGTTA 58.139 50.000 0.00 0.00 32.09 2.85
4638 5692 5.179368 CGACACACAGTTGGTTATTTCTCAT 59.821 40.000 0.00 0.00 0.00 2.90
4719 5773 6.856895 AGAATTTATTGGCAGTTAAGAGCAC 58.143 36.000 0.00 0.00 0.00 4.40
4724 5778 1.912731 TGGCAGTTAAGAGCACCCATA 59.087 47.619 1.96 0.00 0.00 2.74
4796 5872 5.839621 CCGAGCAAGGCTATAACTACTTTA 58.160 41.667 0.00 0.00 39.88 1.85
4838 5914 7.627726 GCACCCTTAATTTTTATGCTTACTCGT 60.628 37.037 0.00 0.00 0.00 4.18
4854 6128 2.478894 ACTCGTGGTCTTACAATTTGCG 59.521 45.455 0.00 0.00 0.00 4.85
4875 6149 0.830648 CGGAGGGAGTATGGAAGCAA 59.169 55.000 0.00 0.00 0.00 3.91
5058 6333 1.740025 GGCCTCTTCTTCATGGAAACG 59.260 52.381 0.00 0.00 0.00 3.60
5138 6484 2.820178 CTCCACCTTTTGCCCCTTAAT 58.180 47.619 0.00 0.00 0.00 1.40
5198 6545 3.829048 TTTTTGAACGCGGAGGCA 58.171 50.000 12.47 0.00 39.92 4.75
5199 6546 2.107705 TTTTTGAACGCGGAGGCAA 58.892 47.368 12.47 6.07 39.92 4.52
5200 6547 0.456221 TTTTTGAACGCGGAGGCAAA 59.544 45.000 12.47 12.07 39.92 3.68
5201 6548 0.456221 TTTTGAACGCGGAGGCAAAA 59.544 45.000 12.47 17.08 39.92 2.44
5202 6549 0.030101 TTTGAACGCGGAGGCAAAAG 59.970 50.000 12.47 0.00 39.92 2.27
5203 6550 0.816018 TTGAACGCGGAGGCAAAAGA 60.816 50.000 12.47 0.00 39.92 2.52
5204 6551 0.605319 TGAACGCGGAGGCAAAAGAT 60.605 50.000 12.47 0.00 39.92 2.40
5205 6552 0.521735 GAACGCGGAGGCAAAAGATT 59.478 50.000 12.47 0.00 39.92 2.40
5206 6553 0.958822 AACGCGGAGGCAAAAGATTT 59.041 45.000 12.47 0.00 39.92 2.17
5207 6554 0.240945 ACGCGGAGGCAAAAGATTTG 59.759 50.000 12.47 0.00 39.92 2.32
5208 6555 1.072666 CGCGGAGGCAAAAGATTTGC 61.073 55.000 17.18 17.18 44.22 3.68
5220 6567 7.599630 GCAAAAGATTTGCCTCATTCATTAA 57.400 32.000 15.12 0.00 39.38 1.40
5221 6568 8.205131 GCAAAAGATTTGCCTCATTCATTAAT 57.795 30.769 15.12 0.00 39.38 1.40
5222 6569 8.671028 GCAAAAGATTTGCCTCATTCATTAATT 58.329 29.630 15.12 0.00 39.38 1.40
5227 6574 8.645110 AGATTTGCCTCATTCATTAATTAAGGG 58.355 33.333 9.79 2.20 0.00 3.95
5228 6575 7.969690 TTTGCCTCATTCATTAATTAAGGGA 57.030 32.000 9.79 1.48 0.00 4.20
5229 6576 7.587037 TTGCCTCATTCATTAATTAAGGGAG 57.413 36.000 9.79 8.37 0.00 4.30
5230 6577 6.070656 TGCCTCATTCATTAATTAAGGGAGG 58.929 40.000 20.39 20.39 41.73 4.30
5231 6578 6.126215 TGCCTCATTCATTAATTAAGGGAGGA 60.126 38.462 25.22 17.25 41.42 3.71
5232 6579 6.432472 GCCTCATTCATTAATTAAGGGAGGAG 59.568 42.308 25.22 23.13 41.42 3.69
5233 6580 7.692789 GCCTCATTCATTAATTAAGGGAGGAGA 60.693 40.741 26.33 10.86 41.42 3.71
5234 6581 7.663493 CCTCATTCATTAATTAAGGGAGGAGAC 59.337 40.741 26.33 0.00 41.42 3.36
5235 6582 8.101309 TCATTCATTAATTAAGGGAGGAGACA 57.899 34.615 9.79 0.00 0.00 3.41
5236 6583 8.556589 TCATTCATTAATTAAGGGAGGAGACAA 58.443 33.333 9.79 0.00 0.00 3.18
5237 6584 8.844244 CATTCATTAATTAAGGGAGGAGACAAG 58.156 37.037 9.79 0.00 0.00 3.16
5238 6585 7.749377 TCATTAATTAAGGGAGGAGACAAGA 57.251 36.000 9.79 0.00 0.00 3.02
5239 6586 8.337118 TCATTAATTAAGGGAGGAGACAAGAT 57.663 34.615 9.79 0.00 0.00 2.40
5240 6587 8.781951 TCATTAATTAAGGGAGGAGACAAGATT 58.218 33.333 9.79 0.00 0.00 2.40
5241 6588 9.413734 CATTAATTAAGGGAGGAGACAAGATTT 57.586 33.333 3.94 0.00 0.00 2.17
5242 6589 8.807948 TTAATTAAGGGAGGAGACAAGATTTG 57.192 34.615 0.00 0.00 0.00 2.32
5243 6590 2.797177 AGGGAGGAGACAAGATTTGC 57.203 50.000 0.00 0.00 0.00 3.68
5244 6591 1.283321 AGGGAGGAGACAAGATTTGCC 59.717 52.381 0.00 0.00 0.00 4.52
5245 6592 1.283321 GGGAGGAGACAAGATTTGCCT 59.717 52.381 0.00 0.00 0.00 4.75
5246 6593 2.637947 GGAGGAGACAAGATTTGCCTC 58.362 52.381 0.00 0.00 39.16 4.70
5247 6594 2.026822 GGAGGAGACAAGATTTGCCTCA 60.027 50.000 0.00 0.00 41.31 3.86
5292 6639 6.294473 AGATGCTAATGTTTCATCGATTCCT 58.706 36.000 0.00 0.00 40.94 3.36
5341 6688 4.680237 CGGCGCAGAACCCACAGA 62.680 66.667 10.83 0.00 0.00 3.41
5419 6766 0.540454 CTGCTCCTCCTGAAGCATCA 59.460 55.000 0.00 0.00 36.65 3.07
5481 6828 5.176407 AGAGGAATCTCGACAAACTATCG 57.824 43.478 0.00 0.00 44.47 2.92
5524 6872 8.340002 TCCTGTGCCTTATCTGATATACTCTAT 58.660 37.037 0.00 0.00 0.00 1.98
5536 6884 1.671979 TACTCTATGCGCTACCGTGT 58.328 50.000 9.73 3.36 36.67 4.49
5580 6928 6.018542 CGTTCATGCGTTTGTCATGTAAATA 58.981 36.000 0.00 0.00 41.40 1.40
5589 6937 7.414762 GCGTTTGTCATGTAAATACCCATACTT 60.415 37.037 0.00 0.00 0.00 2.24
5644 7014 2.288395 CCTCCAAAGTGGTTGATTGTGC 60.288 50.000 0.00 0.00 39.87 4.57
5693 7063 4.176271 TGATGTTCAGAGAGTATGCAACG 58.824 43.478 0.00 0.00 0.00 4.10
5706 7076 4.762765 AGTATGCAACGGGTTATTCAACAA 59.237 37.500 0.00 0.00 36.29 2.83
5711 7081 4.443063 GCAACGGGTTATTCAACAAAGAAC 59.557 41.667 0.00 0.00 38.16 3.01
5720 7090 1.063912 TCAACAAAGAACACAGCTGCG 59.936 47.619 15.27 6.98 0.00 5.18
5724 7094 2.105960 AAAGAACACAGCTGCGTCGC 62.106 55.000 15.27 11.10 0.00 5.19
5739 7109 1.058695 CGTCGCGTGTGTAGGAATTTC 59.941 52.381 5.77 0.00 0.00 2.17
5743 7113 3.861113 TCGCGTGTGTAGGAATTTCATAC 59.139 43.478 12.98 12.98 34.54 2.39
5834 7205 7.757624 GCGAATATAACAAAATTTGACCAGGAA 59.242 33.333 13.19 0.00 0.00 3.36
5835 7206 9.632807 CGAATATAACAAAATTTGACCAGGAAA 57.367 29.630 13.19 0.00 0.00 3.13
5887 7258 3.075283 ACCATGGACACAAATCTACCCAA 59.925 43.478 21.47 0.00 0.00 4.12
5917 7288 3.350219 TCCCAGGAATAACAACAGCTC 57.650 47.619 0.00 0.00 0.00 4.09
6017 7388 3.087031 ACACAGATTGCAGGATTGGAAG 58.913 45.455 0.00 0.00 38.08 3.46
6073 7445 1.209504 CCCAGCTCACCGGAAAATAGA 59.790 52.381 9.46 0.00 0.00 1.98
6136 7508 4.820894 ATTCACTTTCCCTAGTTACGCT 57.179 40.909 0.00 0.00 0.00 5.07
6177 7549 1.738350 CATCAAGGTCTCAAGCAGCAG 59.262 52.381 0.00 0.00 0.00 4.24
6192 7564 0.820891 AGCAGTGCAGGAACACCAAG 60.821 55.000 19.20 0.00 41.67 3.61
6295 7667 0.953960 CGGCAGGAACACCCAGTTAC 60.954 60.000 0.00 0.00 41.51 2.50
6300 7672 1.487558 AGGAACACCCAGTTACGTTGT 59.512 47.619 0.00 0.00 46.20 3.32
6330 7702 1.541233 CCGCAGAGCCTAATCCGATTT 60.541 52.381 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.257371 CGACCGAAGAGACCGCAA 59.743 61.111 0.00 0.00 0.00 4.85
113 114 2.281276 AAGTTCCGCCCACGAACC 60.281 61.111 0.00 0.00 43.93 3.62
166 168 1.374947 CACCAACGACCATCCACCT 59.625 57.895 0.00 0.00 0.00 4.00
172 175 1.901464 GGCAACCACCAACGACCAT 60.901 57.895 0.00 0.00 0.00 3.55
189 193 1.613925 TCCGATGAATCCTAGCTTCGG 59.386 52.381 12.02 12.02 46.83 4.30
192 196 1.974236 CCCTCCGATGAATCCTAGCTT 59.026 52.381 0.00 0.00 0.00 3.74
272 277 3.837731 TCATGAAGGATACAGTGTCCACA 59.162 43.478 18.04 16.26 38.25 4.17
413 425 3.255149 AGAGGTGAGATGTAAAACGACGT 59.745 43.478 0.00 0.00 0.00 4.34
423 435 0.626382 TCCGAGGAGAGGTGAGATGT 59.374 55.000 0.00 0.00 0.00 3.06
446 458 1.078567 GAGCCAAGCAGACCTCCAG 60.079 63.158 0.00 0.00 0.00 3.86
487 500 1.616865 ACGACTGCCAAGCTACTACAA 59.383 47.619 0.00 0.00 0.00 2.41
494 507 2.281761 CCCAACGACTGCCAAGCT 60.282 61.111 0.00 0.00 0.00 3.74
501 514 1.145156 TCACACCACCCAACGACTG 59.855 57.895 0.00 0.00 0.00 3.51
535 549 3.507233 CACACACCCAAAGCAAGATACAT 59.493 43.478 0.00 0.00 0.00 2.29
546 560 1.747924 CACATGACACACACACCCAAA 59.252 47.619 0.00 0.00 0.00 3.28
562 578 0.249868 CTCACGTCACCACCACACAT 60.250 55.000 0.00 0.00 0.00 3.21
575 591 2.666508 GCATCACGATACAAACTCACGT 59.333 45.455 0.00 0.00 37.68 4.49
601 617 7.926555 CCCGCTTTATATATAAATCACCGATCT 59.073 37.037 16.41 0.00 32.36 2.75
610 626 8.417273 ACTTTTGCCCCGCTTTATATATAAAT 57.583 30.769 16.41 0.00 32.36 1.40
651 671 8.992835 ACGGTAAGTATTATTCTTTTCGTTCT 57.007 30.769 6.26 0.00 32.91 3.01
653 673 9.638239 TGTACGGTAAGTATTATTCTTTTCGTT 57.362 29.630 13.21 3.84 37.69 3.85
654 674 9.076596 GTGTACGGTAAGTATTATTCTTTTCGT 57.923 33.333 12.82 12.82 37.69 3.85
655 675 9.294030 AGTGTACGGTAAGTATTATTCTTTTCG 57.706 33.333 0.00 0.00 37.69 3.46
657 677 9.591792 GGAGTGTACGGTAAGTATTATTCTTTT 57.408 33.333 0.00 0.00 37.69 2.27
658 678 8.200120 GGGAGTGTACGGTAAGTATTATTCTTT 58.800 37.037 0.00 0.00 37.69 2.52
659 679 7.201947 GGGGAGTGTACGGTAAGTATTATTCTT 60.202 40.741 0.00 0.00 37.69 2.52
660 680 6.266330 GGGGAGTGTACGGTAAGTATTATTCT 59.734 42.308 0.00 0.00 37.69 2.40
661 681 6.450545 GGGGAGTGTACGGTAAGTATTATTC 58.549 44.000 0.00 0.00 37.69 1.75
662 682 5.305386 GGGGGAGTGTACGGTAAGTATTATT 59.695 44.000 0.00 0.00 37.69 1.40
663 683 4.835056 GGGGGAGTGTACGGTAAGTATTAT 59.165 45.833 0.00 0.00 37.69 1.28
664 684 4.215109 GGGGGAGTGTACGGTAAGTATTA 58.785 47.826 0.00 0.00 37.69 0.98
665 685 3.033909 GGGGGAGTGTACGGTAAGTATT 58.966 50.000 0.00 0.00 37.69 1.89
666 686 2.670939 GGGGGAGTGTACGGTAAGTAT 58.329 52.381 0.00 0.00 37.69 2.12
667 687 1.681780 CGGGGGAGTGTACGGTAAGTA 60.682 57.143 0.00 0.00 0.00 2.24
668 688 0.967380 CGGGGGAGTGTACGGTAAGT 60.967 60.000 0.00 0.00 0.00 2.24
669 689 0.967380 ACGGGGGAGTGTACGGTAAG 60.967 60.000 0.00 0.00 0.00 2.34
670 690 0.965363 GACGGGGGAGTGTACGGTAA 60.965 60.000 0.00 0.00 0.00 2.85
671 691 1.378514 GACGGGGGAGTGTACGGTA 60.379 63.158 0.00 0.00 0.00 4.02
672 692 2.677875 GACGGGGGAGTGTACGGT 60.678 66.667 0.00 0.00 0.00 4.83
673 693 3.455469 GGACGGGGGAGTGTACGG 61.455 72.222 0.00 0.00 0.00 4.02
674 694 3.455469 GGGACGGGGGAGTGTACG 61.455 72.222 0.00 0.00 0.00 3.67
675 695 1.482748 TTTGGGACGGGGGAGTGTAC 61.483 60.000 0.00 0.00 0.00 2.90
676 696 0.767446 TTTTGGGACGGGGGAGTGTA 60.767 55.000 0.00 0.00 0.00 2.90
677 697 2.079911 TTTTGGGACGGGGGAGTGT 61.080 57.895 0.00 0.00 0.00 3.55
678 698 1.602605 GTTTTGGGACGGGGGAGTG 60.603 63.158 0.00 0.00 0.00 3.51
679 699 1.647334 TTGTTTTGGGACGGGGGAGT 61.647 55.000 0.00 0.00 0.00 3.85
680 700 0.893727 CTTGTTTTGGGACGGGGGAG 60.894 60.000 0.00 0.00 0.00 4.30
681 701 1.151908 CTTGTTTTGGGACGGGGGA 59.848 57.895 0.00 0.00 0.00 4.81
682 702 1.152631 ACTTGTTTTGGGACGGGGG 60.153 57.895 0.00 0.00 0.00 5.40
683 703 0.753848 ACACTTGTTTTGGGACGGGG 60.754 55.000 0.00 0.00 0.00 5.73
684 704 0.666374 GACACTTGTTTTGGGACGGG 59.334 55.000 0.00 0.00 0.00 5.28
685 705 0.306533 CGACACTTGTTTTGGGACGG 59.693 55.000 0.00 0.00 0.00 4.79
686 706 0.316689 GCGACACTTGTTTTGGGACG 60.317 55.000 0.00 0.00 0.00 4.79
687 707 0.030235 GGCGACACTTGTTTTGGGAC 59.970 55.000 0.00 0.00 0.00 4.46
688 708 1.440938 CGGCGACACTTGTTTTGGGA 61.441 55.000 0.00 0.00 0.00 4.37
689 709 1.008995 CGGCGACACTTGTTTTGGG 60.009 57.895 0.00 0.00 0.00 4.12
690 710 0.316689 GTCGGCGACACTTGTTTTGG 60.317 55.000 33.07 0.00 32.09 3.28
691 711 0.655733 AGTCGGCGACACTTGTTTTG 59.344 50.000 37.71 0.00 34.60 2.44
692 712 1.375551 AAGTCGGCGACACTTGTTTT 58.624 45.000 37.71 20.69 34.60 2.43
693 713 2.132762 CTAAGTCGGCGACACTTGTTT 58.867 47.619 37.71 24.88 34.80 2.83
694 714 1.068127 ACTAAGTCGGCGACACTTGTT 59.932 47.619 37.71 25.54 34.80 2.83
695 715 0.672342 ACTAAGTCGGCGACACTTGT 59.328 50.000 37.71 26.85 34.80 3.16
696 716 2.248487 GTACTAAGTCGGCGACACTTG 58.752 52.381 37.71 26.27 34.80 3.16
697 717 1.881973 TGTACTAAGTCGGCGACACTT 59.118 47.619 37.71 26.88 36.28 3.16
698 718 1.527034 TGTACTAAGTCGGCGACACT 58.473 50.000 37.71 26.89 34.60 3.55
699 719 1.981533 GTTGTACTAAGTCGGCGACAC 59.018 52.381 37.71 27.03 34.60 3.67
700 720 1.881973 AGTTGTACTAAGTCGGCGACA 59.118 47.619 37.71 20.13 34.60 4.35
701 721 2.626088 AGTTGTACTAAGTCGGCGAC 57.374 50.000 31.33 31.33 0.00 5.19
702 722 2.352030 CCAAGTTGTACTAAGTCGGCGA 60.352 50.000 4.99 4.99 0.00 5.54
703 723 1.990563 CCAAGTTGTACTAAGTCGGCG 59.009 52.381 0.00 0.00 0.00 6.46
704 724 2.028748 TCCCAAGTTGTACTAAGTCGGC 60.029 50.000 1.45 0.00 0.00 5.54
705 725 3.947910 TCCCAAGTTGTACTAAGTCGG 57.052 47.619 1.45 0.00 0.00 4.79
706 726 4.081862 TCCATCCCAAGTTGTACTAAGTCG 60.082 45.833 1.45 0.00 0.00 4.18
707 727 5.416271 TCCATCCCAAGTTGTACTAAGTC 57.584 43.478 1.45 0.00 0.00 3.01
708 728 4.225267 CCTCCATCCCAAGTTGTACTAAGT 59.775 45.833 1.45 0.00 0.00 2.24
709 729 4.469945 TCCTCCATCCCAAGTTGTACTAAG 59.530 45.833 1.45 0.00 0.00 2.18
710 730 4.431378 TCCTCCATCCCAAGTTGTACTAA 58.569 43.478 1.45 0.00 0.00 2.24
711 731 4.069312 TCCTCCATCCCAAGTTGTACTA 57.931 45.455 1.45 0.00 0.00 1.82
712 732 2.915869 TCCTCCATCCCAAGTTGTACT 58.084 47.619 1.45 0.00 0.00 2.73
713 733 3.009143 ACTTCCTCCATCCCAAGTTGTAC 59.991 47.826 1.45 0.00 0.00 2.90
714 734 3.256704 ACTTCCTCCATCCCAAGTTGTA 58.743 45.455 1.45 0.00 0.00 2.41
715 735 2.065799 ACTTCCTCCATCCCAAGTTGT 58.934 47.619 1.45 0.00 0.00 3.32
716 736 2.887151 ACTTCCTCCATCCCAAGTTG 57.113 50.000 0.00 0.00 0.00 3.16
717 737 5.536497 AAATACTTCCTCCATCCCAAGTT 57.464 39.130 0.00 0.00 31.52 2.66
718 738 5.264395 CAAAATACTTCCTCCATCCCAAGT 58.736 41.667 0.00 0.00 33.63 3.16
719 739 4.646492 CCAAAATACTTCCTCCATCCCAAG 59.354 45.833 0.00 0.00 0.00 3.61
720 740 4.293634 TCCAAAATACTTCCTCCATCCCAA 59.706 41.667 0.00 0.00 0.00 4.12
721 741 3.855599 TCCAAAATACTTCCTCCATCCCA 59.144 43.478 0.00 0.00 0.00 4.37
722 742 4.519906 TCCAAAATACTTCCTCCATCCC 57.480 45.455 0.00 0.00 0.00 3.85
723 743 4.757149 CGATCCAAAATACTTCCTCCATCC 59.243 45.833 0.00 0.00 0.00 3.51
724 744 4.757149 CCGATCCAAAATACTTCCTCCATC 59.243 45.833 0.00 0.00 0.00 3.51
725 745 4.412199 TCCGATCCAAAATACTTCCTCCAT 59.588 41.667 0.00 0.00 0.00 3.41
731 751 5.024785 ACTCCTCCGATCCAAAATACTTC 57.975 43.478 0.00 0.00 0.00 3.01
738 758 4.547671 AGAGATTACTCCTCCGATCCAAA 58.452 43.478 0.00 0.00 43.53 3.28
777 797 3.929948 GCTGCTCGTATGCGCACC 61.930 66.667 14.90 5.34 38.14 5.01
778 798 4.271170 CGCTGCTCGTATGCGCAC 62.271 66.667 14.90 0.00 43.08 5.34
806 826 3.133362 ACTTCCCTACGTCAACACTCAAA 59.867 43.478 0.00 0.00 0.00 2.69
808 828 2.295349 GACTTCCCTACGTCAACACTCA 59.705 50.000 0.00 0.00 0.00 3.41
809 829 2.557490 AGACTTCCCTACGTCAACACTC 59.443 50.000 0.00 0.00 32.68 3.51
810 830 2.595238 AGACTTCCCTACGTCAACACT 58.405 47.619 0.00 0.00 32.68 3.55
811 831 4.510038 TTAGACTTCCCTACGTCAACAC 57.490 45.455 0.00 0.00 32.68 3.32
812 832 5.733620 AATTAGACTTCCCTACGTCAACA 57.266 39.130 0.00 0.00 32.68 3.33
910 933 1.244019 ATTGGTTGTTGGCTCTCCGC 61.244 55.000 0.00 0.00 38.13 5.54
1088 1122 1.749334 AAGATCCAGTCCGGGCGATC 61.749 60.000 14.13 14.13 34.36 3.69
1119 1153 5.357596 CCAGACACTCCTACTAAGTAACTCC 59.642 48.000 0.00 0.00 0.00 3.85
1120 1154 5.163632 GCCAGACACTCCTACTAAGTAACTC 60.164 48.000 0.00 0.00 0.00 3.01
1121 1155 4.705991 GCCAGACACTCCTACTAAGTAACT 59.294 45.833 0.00 0.00 0.00 2.24
1122 1156 4.705991 AGCCAGACACTCCTACTAAGTAAC 59.294 45.833 0.00 0.00 0.00 2.50
1123 1157 4.931914 AGCCAGACACTCCTACTAAGTAA 58.068 43.478 0.00 0.00 0.00 2.24
1124 1158 4.587976 AGCCAGACACTCCTACTAAGTA 57.412 45.455 0.00 0.00 0.00 2.24
1125 1159 3.459710 AGCCAGACACTCCTACTAAGT 57.540 47.619 0.00 0.00 0.00 2.24
1126 1160 4.528920 ACTAGCCAGACACTCCTACTAAG 58.471 47.826 0.00 0.00 0.00 2.18
1127 1161 4.587976 ACTAGCCAGACACTCCTACTAA 57.412 45.455 0.00 0.00 0.00 2.24
1134 1168 1.896465 ACCAGAACTAGCCAGACACTC 59.104 52.381 0.00 0.00 0.00 3.51
1138 1172 1.618837 TCACACCAGAACTAGCCAGAC 59.381 52.381 0.00 0.00 0.00 3.51
1150 1185 1.432514 CCACGAGACAATCACACCAG 58.567 55.000 0.00 0.00 0.00 4.00
1159 1194 1.666011 GAGCACTCCCACGAGACAA 59.334 57.895 0.00 0.00 38.52 3.18
1192 1227 5.412594 TCGACCCATCAAAAAGATTCAAGAG 59.587 40.000 0.00 0.00 33.72 2.85
1207 1243 1.131126 CAATTGTGCACTCGACCCATC 59.869 52.381 19.41 0.00 0.00 3.51
1208 1244 1.167851 CAATTGTGCACTCGACCCAT 58.832 50.000 19.41 0.00 0.00 4.00
1231 1267 1.291877 CCTAACAGCAGCGACACCAC 61.292 60.000 0.00 0.00 0.00 4.16
1249 1285 5.967088 ACTACATGATATTATCAGCCGTCC 58.033 41.667 11.77 0.00 43.53 4.79
1274 1310 4.875544 TCCGCAGCAAACATAATCTTAC 57.124 40.909 0.00 0.00 0.00 2.34
1275 1311 6.318648 AGAATTCCGCAGCAAACATAATCTTA 59.681 34.615 0.65 0.00 0.00 2.10
1356 1414 7.548967 AGTAACAGTATCTAAGAACAAGCTCC 58.451 38.462 0.00 0.00 0.00 4.70
1358 1416 9.857957 GTTAGTAACAGTATCTAAGAACAAGCT 57.142 33.333 8.20 0.00 0.00 3.74
1369 1427 8.452534 CGAAGACAAGAGTTAGTAACAGTATCT 58.547 37.037 15.28 6.29 0.00 1.98
1370 1428 7.697291 CCGAAGACAAGAGTTAGTAACAGTATC 59.303 40.741 15.28 4.11 0.00 2.24
1372 1430 6.072286 CCCGAAGACAAGAGTTAGTAACAGTA 60.072 42.308 15.28 0.00 0.00 2.74
1373 1431 5.278858 CCCGAAGACAAGAGTTAGTAACAGT 60.279 44.000 15.28 7.76 0.00 3.55
1374 1432 5.162075 CCCGAAGACAAGAGTTAGTAACAG 58.838 45.833 15.28 4.85 0.00 3.16
1376 1434 4.492611 CCCCGAAGACAAGAGTTAGTAAC 58.507 47.826 4.78 4.78 0.00 2.50
1377 1435 3.512724 CCCCCGAAGACAAGAGTTAGTAA 59.487 47.826 0.00 0.00 0.00 2.24
1378 1436 3.094572 CCCCCGAAGACAAGAGTTAGTA 58.905 50.000 0.00 0.00 0.00 1.82
1379 1437 1.900486 CCCCCGAAGACAAGAGTTAGT 59.100 52.381 0.00 0.00 0.00 2.24
1394 1453 1.405105 CTCATGCATTTTACACCCCCG 59.595 52.381 0.00 0.00 0.00 5.73
1402 1461 5.945191 TGACCACATCTTCTCATGCATTTTA 59.055 36.000 0.00 0.00 0.00 1.52
1409 1468 8.900781 AGAAATTAATGACCACATCTTCTCATG 58.099 33.333 0.00 0.00 35.50 3.07
1436 1495 9.787532 CTTGTGAGACATTTAAGTCAAGAAAAA 57.212 29.630 0.00 0.00 40.98 1.94
1455 1514 3.581755 CCAAAATCACCATGCTTGTGAG 58.418 45.455 8.85 0.00 45.20 3.51
1476 1535 4.462483 TGAACTGGGAAACATTTATGAGCC 59.538 41.667 0.00 0.00 0.00 4.70
1593 1671 7.040201 GCATTTCATAGCCCATGAGATTCTAAA 60.040 37.037 0.00 0.00 44.47 1.85
1611 1689 5.401550 CACAGTAAAACATCGGCATTTCAT 58.598 37.500 0.00 0.00 0.00 2.57
1639 1717 3.315191 TCGCCAAGAAGAACCTGAAAAAG 59.685 43.478 0.00 0.00 0.00 2.27
1698 1777 6.416750 GGAACTCAACAAATTGTCCTTTTACG 59.583 38.462 0.00 0.00 37.11 3.18
1857 1939 6.686130 AACTTAACAGTCTCGTCATTAACG 57.314 37.500 0.00 0.00 41.95 3.18
1875 1957 6.599244 CAGCTGTATCCCAGATTTCAAACTTA 59.401 38.462 5.25 0.00 44.49 2.24
1896 1978 0.762461 GATACCTCTCCTGCCCAGCT 60.762 60.000 0.00 0.00 0.00 4.24
2012 2094 6.877322 TCGAGGCCTATTATTTTATAACTGGC 59.123 38.462 4.42 12.35 37.34 4.85
2018 2100 8.812972 ACTGTCATCGAGGCCTATTATTTTATA 58.187 33.333 4.42 0.00 0.00 0.98
2032 2114 3.050703 CGGGAAACTGTCATCGAGG 57.949 57.895 0.00 0.00 0.00 4.63
2045 2127 7.221450 AGCAGCTAATATGTAAATAACGGGAA 58.779 34.615 0.00 0.00 0.00 3.97
2049 2131 7.323656 GCCAAAGCAGCTAATATGTAAATAACG 59.676 37.037 0.00 0.00 39.53 3.18
2050 2132 7.595130 GGCCAAAGCAGCTAATATGTAAATAAC 59.405 37.037 0.00 0.00 42.56 1.89
2061 2143 1.027357 CATCGGCCAAAGCAGCTAAT 58.973 50.000 2.24 0.00 42.56 1.73
2066 2148 0.597568 TTGTTCATCGGCCAAAGCAG 59.402 50.000 2.24 0.00 42.56 4.24
2077 2159 7.552687 TGTAAGGAGTCATAACCATTGTTCATC 59.447 37.037 0.00 0.00 35.87 2.92
2170 2252 3.240302 ACTACCTTGCCTGACTTACTGT 58.760 45.455 0.00 0.00 0.00 3.55
2197 2283 5.592104 TCTGAGAACTAAATCACGCCATA 57.408 39.130 0.00 0.00 0.00 2.74
2218 2304 7.011950 CCCTCCACAAATTTTTAAAAGGTGTTC 59.988 37.037 16.15 0.00 0.00 3.18
2219 2305 6.826231 CCCTCCACAAATTTTTAAAAGGTGTT 59.174 34.615 16.15 4.73 0.00 3.32
2220 2306 6.157123 TCCCTCCACAAATTTTTAAAAGGTGT 59.843 34.615 16.15 12.13 0.00 4.16
2221 2307 6.587273 TCCCTCCACAAATTTTTAAAAGGTG 58.413 36.000 0.14 8.43 0.00 4.00
2222 2308 6.816616 TCCCTCCACAAATTTTTAAAAGGT 57.183 33.333 0.14 0.00 0.00 3.50
2223 2309 6.204688 GCTTCCCTCCACAAATTTTTAAAAGG 59.795 38.462 0.14 0.00 0.00 3.11
2224 2310 6.765512 TGCTTCCCTCCACAAATTTTTAAAAG 59.234 34.615 0.14 0.00 0.00 2.27
2225 2311 6.653989 TGCTTCCCTCCACAAATTTTTAAAA 58.346 32.000 0.00 0.00 0.00 1.52
2226 2312 6.240549 TGCTTCCCTCCACAAATTTTTAAA 57.759 33.333 0.00 0.00 0.00 1.52
2227 2313 5.878406 TGCTTCCCTCCACAAATTTTTAA 57.122 34.783 0.00 0.00 0.00 1.52
2228 2314 5.878406 TTGCTTCCCTCCACAAATTTTTA 57.122 34.783 0.00 0.00 0.00 1.52
2229 2315 4.769345 TTGCTTCCCTCCACAAATTTTT 57.231 36.364 0.00 0.00 0.00 1.94
2230 2316 4.505390 CCATTGCTTCCCTCCACAAATTTT 60.505 41.667 0.00 0.00 0.00 1.82
2231 2317 3.008266 CCATTGCTTCCCTCCACAAATTT 59.992 43.478 0.00 0.00 0.00 1.82
2232 2318 2.568509 CCATTGCTTCCCTCCACAAATT 59.431 45.455 0.00 0.00 0.00 1.82
2233 2319 2.181975 CCATTGCTTCCCTCCACAAAT 58.818 47.619 0.00 0.00 0.00 2.32
2234 2320 1.631405 CCATTGCTTCCCTCCACAAA 58.369 50.000 0.00 0.00 0.00 2.83
2235 2321 0.251742 CCCATTGCTTCCCTCCACAA 60.252 55.000 0.00 0.00 0.00 3.33
2236 2322 1.383799 CCCATTGCTTCCCTCCACA 59.616 57.895 0.00 0.00 0.00 4.17
2237 2323 2.054453 GCCCATTGCTTCCCTCCAC 61.054 63.158 0.00 0.00 36.87 4.02
2238 2324 2.360191 GCCCATTGCTTCCCTCCA 59.640 61.111 0.00 0.00 36.87 3.86
2239 2325 1.755783 CTGCCCATTGCTTCCCTCC 60.756 63.158 0.00 0.00 42.00 4.30
2240 2326 0.613012 AACTGCCCATTGCTTCCCTC 60.613 55.000 0.00 0.00 42.00 4.30
2241 2327 0.901580 CAACTGCCCATTGCTTCCCT 60.902 55.000 0.00 0.00 42.00 4.20
2242 2328 1.593265 CAACTGCCCATTGCTTCCC 59.407 57.895 0.00 0.00 42.00 3.97
2243 2329 1.593265 CCAACTGCCCATTGCTTCC 59.407 57.895 0.00 0.00 42.00 3.46
2244 2330 1.593265 CCCAACTGCCCATTGCTTC 59.407 57.895 0.00 0.00 42.00 3.86
2245 2331 2.586293 GCCCAACTGCCCATTGCTT 61.586 57.895 0.00 0.00 42.00 3.91
2246 2332 2.999063 GCCCAACTGCCCATTGCT 60.999 61.111 0.00 0.00 42.00 3.91
2247 2333 3.312718 TGCCCAACTGCCCATTGC 61.313 61.111 0.00 0.00 41.77 3.56
2248 2334 1.474332 AAGTGCCCAACTGCCCATTG 61.474 55.000 0.00 0.00 39.81 2.82
2249 2335 1.152269 AAGTGCCCAACTGCCCATT 60.152 52.632 0.00 0.00 39.81 3.16
2250 2336 1.909781 CAAGTGCCCAACTGCCCAT 60.910 57.895 0.00 0.00 39.81 4.00
2251 2337 2.521465 CAAGTGCCCAACTGCCCA 60.521 61.111 0.00 0.00 39.81 5.36
2252 2338 3.305516 CCAAGTGCCCAACTGCCC 61.306 66.667 0.00 0.00 39.81 5.36
2253 2339 2.706952 TACCCAAGTGCCCAACTGCC 62.707 60.000 0.00 0.00 39.81 4.85
2254 2340 0.825840 TTACCCAAGTGCCCAACTGC 60.826 55.000 0.00 0.00 39.81 4.40
2255 2341 1.698506 TTTACCCAAGTGCCCAACTG 58.301 50.000 0.00 0.00 39.81 3.16
2256 2342 2.463047 TTTTACCCAAGTGCCCAACT 57.537 45.000 0.00 0.00 42.60 3.16
2257 2343 2.897326 AGATTTTACCCAAGTGCCCAAC 59.103 45.455 0.00 0.00 0.00 3.77
2258 2344 2.896685 CAGATTTTACCCAAGTGCCCAA 59.103 45.455 0.00 0.00 0.00 4.12
2259 2345 2.109128 TCAGATTTTACCCAAGTGCCCA 59.891 45.455 0.00 0.00 0.00 5.36
2260 2346 2.492088 GTCAGATTTTACCCAAGTGCCC 59.508 50.000 0.00 0.00 0.00 5.36
2432 2554 3.437395 TGCCACATTGTTACCGTTATGAC 59.563 43.478 0.00 0.00 0.00 3.06
2440 2562 1.604147 GCCCCTGCCACATTGTTACC 61.604 60.000 0.00 0.00 0.00 2.85
2445 2567 2.114670 CGTAGCCCCTGCCACATTG 61.115 63.158 0.00 0.00 38.69 2.82
2474 2596 5.276270 GCTAACTGCATTTATGGTGTCATG 58.724 41.667 0.00 0.00 42.31 3.07
2620 2742 7.155655 ACAACCAGTAGCTAGTACTTAAGTC 57.844 40.000 12.39 4.24 40.27 3.01
2706 2850 3.541072 AATGCCCATCATTGCCCG 58.459 55.556 0.00 0.00 43.40 6.13
2711 2855 9.236006 GACTAAGTATTATCAATGCCCATCATT 57.764 33.333 0.00 0.00 45.82 2.57
2713 2857 7.744733 TGACTAAGTATTATCAATGCCCATCA 58.255 34.615 0.00 0.00 0.00 3.07
2714 2858 8.507249 GTTGACTAAGTATTATCAATGCCCATC 58.493 37.037 0.00 0.00 33.77 3.51
2715 2859 7.173218 CGTTGACTAAGTATTATCAATGCCCAT 59.827 37.037 0.00 0.00 33.77 4.00
2716 2860 6.481976 CGTTGACTAAGTATTATCAATGCCCA 59.518 38.462 0.00 0.00 33.77 5.36
2738 2882 5.357878 TGAGGAATACCGTGTATTAGTCGTT 59.642 40.000 8.64 0.00 41.83 3.85
2773 2917 5.585844 CACAGCAAACATACATCCATAGTCA 59.414 40.000 0.00 0.00 0.00 3.41
2817 2961 4.022762 CAGATGAGGTCCCGTGATAACTAG 60.023 50.000 0.00 0.00 0.00 2.57
2827 2971 2.280628 GCTAAAACAGATGAGGTCCCG 58.719 52.381 0.00 0.00 0.00 5.14
2830 2974 5.412594 TGAACATGCTAAAACAGATGAGGTC 59.587 40.000 0.00 0.00 0.00 3.85
2836 2980 6.658816 TGTGGTATGAACATGCTAAAACAGAT 59.341 34.615 0.00 0.00 0.00 2.90
2854 2998 6.389091 CAAACACAAAGTGCATATGTGGTAT 58.611 36.000 24.20 12.99 43.80 2.73
2887 3031 8.982685 CGAGCACAGAATAGAATTACAACATAT 58.017 33.333 0.00 0.00 0.00 1.78
2888 3032 8.194769 TCGAGCACAGAATAGAATTACAACATA 58.805 33.333 0.00 0.00 0.00 2.29
2994 3146 7.619302 TGAAGGATGCCTGAAGGTAAAAATAAT 59.381 33.333 0.00 0.00 37.57 1.28
2995 3147 6.951198 TGAAGGATGCCTGAAGGTAAAAATAA 59.049 34.615 0.00 0.00 37.57 1.40
3119 3272 5.221048 GCTGGTTAGCCATACAATTTACAGG 60.221 44.000 0.00 0.00 45.05 4.00
3120 3273 5.821204 GCTGGTTAGCCATACAATTTACAG 58.179 41.667 0.00 0.00 45.05 2.74
3121 3274 5.828299 GCTGGTTAGCCATACAATTTACA 57.172 39.130 0.00 0.00 45.05 2.41
3134 3287 9.729256 AGCTAACTATTTCAGGAGCTGGTTAGC 62.729 44.444 20.82 20.82 45.78 3.09
3148 3301 8.193250 TGGATTTCGTACAAGCTAACTATTTC 57.807 34.615 0.00 0.00 0.00 2.17
3345 3730 2.151502 TTCTGGTTTCCTGCACCAAA 57.848 45.000 0.00 0.00 43.96 3.28
3352 3737 5.178797 CCACTACTGTATTCTGGTTTCCTG 58.821 45.833 0.00 0.00 0.00 3.86
3438 3823 3.321682 CCAAGCAACCAGGAAGAAAATGA 59.678 43.478 0.00 0.00 0.00 2.57
3460 3845 7.609056 TGTACAATACTAGACTTGGAAGGTTC 58.391 38.462 0.00 0.00 0.00 3.62
3630 4019 7.947890 ACCCCAAATTAACAGAAGTAAGAATGA 59.052 33.333 0.00 0.00 0.00 2.57
3631 4020 8.122472 ACCCCAAATTAACAGAAGTAAGAATG 57.878 34.615 0.00 0.00 0.00 2.67
3639 4028 6.155475 TGTTGAACCCCAAATTAACAGAAG 57.845 37.500 0.00 0.00 36.36 2.85
3647 4036 4.712337 TGTACAACTGTTGAACCCCAAATT 59.288 37.500 26.00 3.13 36.36 1.82
3698 4087 9.191995 CAAAACAGATTAAAATACAAGGTGGAC 57.808 33.333 0.00 0.00 0.00 4.02
3760 4149 7.589395 TGTGAACGTGCAATATCAAGTATTTT 58.411 30.769 0.00 0.00 30.53 1.82
3775 4164 5.942325 AACTAAAAACAATGTGAACGTGC 57.058 34.783 0.00 0.00 0.00 5.34
3790 4179 8.455682 CACAGTAGGAAGTTGTGAAAACTAAAA 58.544 33.333 0.00 0.00 43.68 1.52
3857 4246 8.246180 CACAAAAGACTAAATGATGGTAATGCT 58.754 33.333 0.00 0.00 0.00 3.79
3859 4248 7.489113 GGCACAAAAGACTAAATGATGGTAATG 59.511 37.037 0.00 0.00 0.00 1.90
3972 4966 6.584942 CCTTGCCGTCTTTTATTTCTTAAACC 59.415 38.462 0.00 0.00 29.47 3.27
3984 4978 8.747538 AAATAATAGTATCCTTGCCGTCTTTT 57.252 30.769 0.00 0.00 0.00 2.27
4048 5050 7.360113 ACTACCAAAACAATTTCCACAAGAT 57.640 32.000 0.00 0.00 0.00 2.40
4050 5052 7.712797 ACTACTACCAAAACAATTTCCACAAG 58.287 34.615 0.00 0.00 0.00 3.16
4116 5124 7.136822 TCAGTATGCAATTTAGGGAGTGTAT 57.863 36.000 0.00 0.00 34.76 2.29
4117 5125 6.553953 TCAGTATGCAATTTAGGGAGTGTA 57.446 37.500 0.00 0.00 34.76 2.90
4208 5216 0.690192 TGGACTCGGGAGCATTTTCA 59.310 50.000 0.00 0.00 0.00 2.69
4215 5223 4.459089 GGCTGTGGACTCGGGAGC 62.459 72.222 0.00 0.00 0.00 4.70
4217 5225 3.846405 AAGGGCTGTGGACTCGGGA 62.846 63.158 0.00 0.00 0.00 5.14
4220 5228 1.376037 GGAAAGGGCTGTGGACTCG 60.376 63.158 0.00 0.00 0.00 4.18
4249 5257 2.423538 CCAGGTAATTAAGCCAGCACAC 59.576 50.000 0.00 0.00 0.00 3.82
4255 5263 2.041081 AGTGCACCAGGTAATTAAGCCA 59.959 45.455 14.63 0.00 0.00 4.75
4269 5277 1.852067 CGTTGGGCTGTTAGTGCACC 61.852 60.000 14.63 0.00 31.89 5.01
4319 5327 1.534729 CCCTAATTAATCGCTGGGCC 58.465 55.000 0.00 0.00 0.00 5.80
4429 5483 1.755959 CCTGCTAGTCAGTGAGAGCAT 59.244 52.381 23.40 0.00 43.61 3.79
4430 5484 1.180907 CCTGCTAGTCAGTGAGAGCA 58.819 55.000 22.31 22.31 42.47 4.26
4452 5506 7.129457 AGCTATCCTTGTCATGACTTCATAA 57.871 36.000 25.55 10.89 34.26 1.90
4493 5547 7.351981 TGAGTTGTACAAATCATGAAAAGACG 58.648 34.615 29.30 0.00 40.00 4.18
4514 5568 1.133199 TCCAGGTTGGGCAAAATGAGT 60.133 47.619 0.00 0.00 38.32 3.41
4537 5591 4.657969 AGCTCAGCCTGGATAGTTTAATCT 59.342 41.667 0.00 0.00 0.00 2.40
4548 5602 1.065199 CCAATAACAGCTCAGCCTGGA 60.065 52.381 0.00 0.00 37.16 3.86
4561 5615 4.378459 CGGAGTTCTGCTTTGTCCAATAAC 60.378 45.833 0.00 0.00 0.00 1.89
4577 5631 5.697633 TGATACCAAACTAAACACGGAGTTC 59.302 40.000 0.00 0.00 41.61 3.01
4612 5666 4.750098 AGAAATAACCAACTGTGTGTCGAG 59.250 41.667 0.00 0.00 0.00 4.04
4619 5673 6.149308 TGCTACATGAGAAATAACCAACTGTG 59.851 38.462 0.00 0.00 0.00 3.66
4620 5674 6.149474 GTGCTACATGAGAAATAACCAACTGT 59.851 38.462 0.00 0.00 0.00 3.55
4719 5773 3.019564 CTCTTGCTTTCCTTGGTATGGG 58.980 50.000 0.00 0.00 0.00 4.00
4724 5778 2.736670 ACACTCTTGCTTTCCTTGGT 57.263 45.000 0.00 0.00 0.00 3.67
4796 5872 2.354805 GGGTGCGTTCAGAACTTAGGAT 60.355 50.000 11.60 0.00 0.00 3.24
4807 5883 5.047660 AGCATAAAAATTAAGGGTGCGTTCA 60.048 36.000 0.00 0.00 36.32 3.18
4808 5884 5.407502 AGCATAAAAATTAAGGGTGCGTTC 58.592 37.500 0.00 0.00 36.32 3.95
4838 5914 1.801771 CCGTCGCAAATTGTAAGACCA 59.198 47.619 10.74 0.00 0.00 4.02
4854 6128 0.389757 GCTTCCATACTCCCTCCGTC 59.610 60.000 0.00 0.00 0.00 4.79
4929 6203 2.500229 ACACCCACATCAAGTAAACCG 58.500 47.619 0.00 0.00 0.00 4.44
5058 6333 3.708563 TTGGTTGCAGTTTTAGCAGAC 57.291 42.857 0.00 0.00 43.75 3.51
5181 6528 0.456221 TTTGCCTCCGCGTTCAAAAA 59.544 45.000 4.92 0.00 38.08 1.94
5182 6529 0.456221 TTTTGCCTCCGCGTTCAAAA 59.544 45.000 4.92 12.30 38.08 2.44
5183 6530 0.030101 CTTTTGCCTCCGCGTTCAAA 59.970 50.000 4.92 6.78 38.08 2.69
5184 6531 0.816018 TCTTTTGCCTCCGCGTTCAA 60.816 50.000 4.92 0.14 38.08 2.69
5185 6532 0.605319 ATCTTTTGCCTCCGCGTTCA 60.605 50.000 4.92 0.00 38.08 3.18
5186 6533 0.521735 AATCTTTTGCCTCCGCGTTC 59.478 50.000 4.92 0.00 38.08 3.95
5187 6534 0.958822 AAATCTTTTGCCTCCGCGTT 59.041 45.000 4.92 0.00 38.08 4.84
5188 6535 0.240945 CAAATCTTTTGCCTCCGCGT 59.759 50.000 4.92 0.00 38.08 6.01
5189 6536 1.072666 GCAAATCTTTTGCCTCCGCG 61.073 55.000 12.74 0.00 39.38 6.46
5190 6537 2.741930 GCAAATCTTTTGCCTCCGC 58.258 52.632 12.74 0.00 39.38 5.54
5196 6543 7.599630 TTAATGAATGAGGCAAATCTTTTGC 57.400 32.000 14.88 14.88 44.22 3.68
5201 6548 8.645110 CCCTTAATTAATGAATGAGGCAAATCT 58.355 33.333 0.00 0.00 31.94 2.40
5202 6549 8.641541 TCCCTTAATTAATGAATGAGGCAAATC 58.358 33.333 0.00 0.00 31.94 2.17
5203 6550 8.551682 TCCCTTAATTAATGAATGAGGCAAAT 57.448 30.769 0.00 0.00 31.94 2.32
5204 6551 7.069826 CCTCCCTTAATTAATGAATGAGGCAAA 59.930 37.037 14.18 0.00 31.94 3.68
5205 6552 6.550854 CCTCCCTTAATTAATGAATGAGGCAA 59.449 38.462 14.18 0.00 31.94 4.52
5206 6553 6.070656 CCTCCCTTAATTAATGAATGAGGCA 58.929 40.000 14.18 0.00 31.94 4.75
5207 6554 6.306987 TCCTCCCTTAATTAATGAATGAGGC 58.693 40.000 18.51 0.00 33.33 4.70
5208 6555 7.663493 GTCTCCTCCCTTAATTAATGAATGAGG 59.337 40.741 17.78 17.78 34.05 3.86
5209 6556 8.213679 TGTCTCCTCCCTTAATTAATGAATGAG 58.786 37.037 0.00 7.66 0.00 2.90
5210 6557 8.101309 TGTCTCCTCCCTTAATTAATGAATGA 57.899 34.615 0.00 0.00 0.00 2.57
5211 6558 8.752005 TTGTCTCCTCCCTTAATTAATGAATG 57.248 34.615 0.00 0.00 0.00 2.67
5212 6559 8.781951 TCTTGTCTCCTCCCTTAATTAATGAAT 58.218 33.333 0.00 0.00 0.00 2.57
5213 6560 8.158025 TCTTGTCTCCTCCCTTAATTAATGAA 57.842 34.615 0.00 0.00 0.00 2.57
5214 6561 7.749377 TCTTGTCTCCTCCCTTAATTAATGA 57.251 36.000 0.00 0.00 0.00 2.57
5215 6562 8.986929 AATCTTGTCTCCTCCCTTAATTAATG 57.013 34.615 0.00 0.00 0.00 1.90
5216 6563 9.413734 CAAATCTTGTCTCCTCCCTTAATTAAT 57.586 33.333 0.00 0.00 0.00 1.40
5217 6564 7.339466 GCAAATCTTGTCTCCTCCCTTAATTAA 59.661 37.037 0.00 0.00 0.00 1.40
5218 6565 6.828785 GCAAATCTTGTCTCCTCCCTTAATTA 59.171 38.462 0.00 0.00 0.00 1.40
5219 6566 5.654209 GCAAATCTTGTCTCCTCCCTTAATT 59.346 40.000 0.00 0.00 0.00 1.40
5220 6567 5.196695 GCAAATCTTGTCTCCTCCCTTAAT 58.803 41.667 0.00 0.00 0.00 1.40
5221 6568 4.567747 GGCAAATCTTGTCTCCTCCCTTAA 60.568 45.833 0.00 0.00 31.13 1.85
5222 6569 3.054361 GGCAAATCTTGTCTCCTCCCTTA 60.054 47.826 0.00 0.00 31.13 2.69
5223 6570 2.291217 GGCAAATCTTGTCTCCTCCCTT 60.291 50.000 0.00 0.00 31.13 3.95
5224 6571 1.283321 GGCAAATCTTGTCTCCTCCCT 59.717 52.381 0.00 0.00 31.13 4.20
5225 6572 1.283321 AGGCAAATCTTGTCTCCTCCC 59.717 52.381 0.00 0.00 43.25 4.30
5226 6573 2.797177 AGGCAAATCTTGTCTCCTCC 57.203 50.000 0.00 0.00 43.25 4.30
5242 6589 6.505044 TCATATAACATCAATGCATGAGGC 57.495 37.500 0.00 0.00 43.58 4.70
5292 6639 2.910199 AGCAATCTCTTCGCTGCAATA 58.090 42.857 0.00 0.00 37.26 1.90
5341 6688 3.782443 GAGAACCATCCCCGCCGT 61.782 66.667 0.00 0.00 0.00 5.68
5419 6766 5.642063 AGACGACGAATGTGACCAAATTTAT 59.358 36.000 0.00 0.00 0.00 1.40
5481 6828 0.729690 GGATCAAGAGGCGCTTTCAC 59.270 55.000 7.64 0.00 33.60 3.18
5536 6884 2.289547 CGAAAAAGAAAAGACAGGCGGA 59.710 45.455 0.00 0.00 0.00 5.54
5580 6928 0.255890 AGCGGCATTCAAGTATGGGT 59.744 50.000 1.45 0.00 0.00 4.51
5652 7022 7.054491 ACATCAAACTTAGGAGCAACAATTT 57.946 32.000 0.00 0.00 0.00 1.82
5693 7063 4.982295 GCTGTGTTCTTTGTTGAATAACCC 59.018 41.667 0.00 0.00 35.92 4.11
5706 7076 2.598632 GCGACGCAGCTGTGTTCTT 61.599 57.895 31.98 11.19 39.12 2.52
5720 7090 2.063266 TGAAATTCCTACACACGCGAC 58.937 47.619 15.93 0.00 0.00 5.19
5724 7094 7.044249 CGAACTAGTATGAAATTCCTACACACG 60.044 40.741 10.27 5.63 0.00 4.49
5739 7109 5.713792 ACTGATCCCATCGAACTAGTATG 57.286 43.478 0.00 0.00 0.00 2.39
5743 7113 4.122776 CCAAACTGATCCCATCGAACTAG 58.877 47.826 0.00 0.00 0.00 2.57
5834 7205 2.238521 CCCTGCACATTACCTGTTGTT 58.761 47.619 0.00 0.00 35.29 2.83
5835 7206 1.547675 CCCCTGCACATTACCTGTTGT 60.548 52.381 0.00 0.00 35.29 3.32
5836 7207 1.176527 CCCCTGCACATTACCTGTTG 58.823 55.000 0.00 0.00 35.29 3.33
5887 7258 7.453126 TGTTGTTATTCCTGGGATGTGTAAAAT 59.547 33.333 0.00 0.00 0.00 1.82
6017 7388 3.334583 TGGCATGTACTGAAGTTCCTC 57.665 47.619 0.00 0.00 0.00 3.71
6073 7445 6.583562 ACAAGTTAGATTAGGCTAAATCGCT 58.416 36.000 11.59 8.88 40.19 4.93
6109 7481 7.871463 GCGTAACTAGGGAAAGTGAATATGTAT 59.129 37.037 0.00 0.00 0.00 2.29
6177 7549 0.031178 CTTGCTTGGTGTTCCTGCAC 59.969 55.000 0.00 0.00 40.89 4.57
6192 7564 1.334689 GGAAGTACAACGCCAACTTGC 60.335 52.381 0.00 0.00 33.72 4.01
6251 7623 2.918571 ACTGCGTGTGACCTGAATG 58.081 52.632 0.00 0.00 0.00 2.67
6295 7667 0.319211 TGCGGACCAGAAGTACAACG 60.319 55.000 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.