Multiple sequence alignment - TraesCS4B01G019000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G019000 chr4B 100.000 4491 0 0 1 4491 13972843 13977333 0.000000e+00 8294
1 TraesCS4B01G019000 chr4A 92.612 3208 157 46 1293 4491 595844319 595847455 0.000000e+00 4538
2 TraesCS4B01G019000 chr4A 82.942 639 53 28 276 865 595843244 595843875 3.980000e-145 525
3 TraesCS4B01G019000 chr4A 90.698 301 19 4 899 1198 595843995 595844287 4.210000e-105 392
4 TraesCS4B01G019000 chr4A 81.019 216 16 9 5 208 595843016 595843218 1.010000e-31 148
5 TraesCS4B01G019000 chr4D 93.076 2224 111 24 2284 4491 7759878 7757682 0.000000e+00 3214
6 TraesCS4B01G019000 chr4D 85.638 933 61 30 954 1867 7761231 7760353 0.000000e+00 913
7 TraesCS4B01G019000 chr4D 97.716 394 9 0 1890 2283 7760359 7759966 0.000000e+00 678
8 TraesCS4B01G019000 chr4D 79.824 907 66 45 8 865 7762221 7761383 1.830000e-153 553


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G019000 chr4B 13972843 13977333 4490 False 8294.00 8294 100.00000 1 4491 1 chr4B.!!$F1 4490
1 TraesCS4B01G019000 chr4A 595843016 595847455 4439 False 1400.75 4538 86.81775 5 4491 4 chr4A.!!$F1 4486
2 TraesCS4B01G019000 chr4D 7757682 7762221 4539 True 1339.50 3214 89.06350 8 4491 4 chr4D.!!$R1 4483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 178 0.108396 ACAAATGTGGCAAAAGGGGC 59.892 50.0 0.0 0.0 0.00 5.80 F
660 744 0.179129 CCTTTGATTGATGGTGCGGC 60.179 55.0 0.0 0.0 0.00 6.53 F
1864 2073 0.453793 TGACGCCACAAAACCAGTTG 59.546 50.0 0.0 0.0 34.52 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 1498 1.004979 TGGGCGCCCTAGTGTTATTTT 59.995 47.619 43.34 0.0 36.94 1.82 R
1936 2175 2.017782 GAGCTCAGTATCCGTGTGAGA 58.982 52.381 9.40 0.0 40.21 3.27 R
3490 3817 0.034059 CCGCAGAGCCTAATCCGATT 59.966 55.000 0.00 0.0 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.844420 CCCTCGGCAATCAGTCTC 57.156 61.111 0.00 0.00 0.00 3.36
30 31 1.333636 CGGCAATCAGTCTCCTCCCT 61.334 60.000 0.00 0.00 0.00 4.20
34 35 1.022903 AATCAGTCTCCTCCCTCCCT 58.977 55.000 0.00 0.00 0.00 4.20
50 56 1.228245 CCTCCCCACACAACCACAG 60.228 63.158 0.00 0.00 0.00 3.66
61 67 0.825010 CAACCACAGGAAGCCAGCTT 60.825 55.000 4.17 4.17 39.23 3.74
80 96 4.694509 AGCTTGATCTCACTTGCTAAACTG 59.305 41.667 0.00 0.00 0.00 3.16
81 97 4.671250 GCTTGATCTCACTTGCTAAACTGC 60.671 45.833 0.00 0.00 0.00 4.40
82 98 2.995939 TGATCTCACTTGCTAAACTGCG 59.004 45.455 0.00 0.00 35.36 5.18
83 99 1.795768 TCTCACTTGCTAAACTGCGG 58.204 50.000 0.00 0.00 35.36 5.69
84 100 1.343142 TCTCACTTGCTAAACTGCGGA 59.657 47.619 0.00 0.00 35.36 5.54
85 101 2.143122 CTCACTTGCTAAACTGCGGAA 58.857 47.619 0.00 0.00 35.36 4.30
86 102 2.548057 CTCACTTGCTAAACTGCGGAAA 59.452 45.455 0.00 0.00 35.36 3.13
87 103 3.146066 TCACTTGCTAAACTGCGGAAAT 58.854 40.909 0.00 0.00 35.36 2.17
88 104 3.188460 TCACTTGCTAAACTGCGGAAATC 59.812 43.478 0.00 0.00 35.36 2.17
89 105 2.488153 ACTTGCTAAACTGCGGAAATCC 59.512 45.455 0.00 0.00 35.36 3.01
90 106 2.489938 TGCTAAACTGCGGAAATCCT 57.510 45.000 0.00 0.00 35.36 3.24
94 110 3.556365 GCTAAACTGCGGAAATCCTACTC 59.444 47.826 0.00 0.00 0.00 2.59
96 112 0.179108 ACTGCGGAAATCCTACTCGC 60.179 55.000 0.00 0.00 45.60 5.03
99 115 1.436336 CGGAAATCCTACTCGCCGT 59.564 57.895 0.00 0.00 34.45 5.68
105 121 0.818445 ATCCTACTCGCCGTCACGAT 60.818 55.000 0.00 0.00 42.02 3.73
162 178 0.108396 ACAAATGTGGCAAAAGGGGC 59.892 50.000 0.00 0.00 0.00 5.80
208 229 4.047142 GCTTTTCCTTCTTCAAGCAACAG 58.953 43.478 0.00 0.00 41.16 3.16
209 230 4.202050 GCTTTTCCTTCTTCAAGCAACAGA 60.202 41.667 0.00 0.00 41.16 3.41
210 231 4.900635 TTTCCTTCTTCAAGCAACAGAC 57.099 40.909 0.00 0.00 0.00 3.51
211 232 3.558931 TCCTTCTTCAAGCAACAGACA 57.441 42.857 0.00 0.00 0.00 3.41
227 248 5.536497 ACAGACATATTTTTCCTCCCCTT 57.464 39.130 0.00 0.00 0.00 3.95
228 249 5.510430 ACAGACATATTTTTCCTCCCCTTC 58.490 41.667 0.00 0.00 0.00 3.46
229 250 4.889995 CAGACATATTTTTCCTCCCCTTCC 59.110 45.833 0.00 0.00 0.00 3.46
230 251 4.079154 AGACATATTTTTCCTCCCCTTCCC 60.079 45.833 0.00 0.00 0.00 3.97
231 252 3.864770 ACATATTTTTCCTCCCCTTCCCT 59.135 43.478 0.00 0.00 0.00 4.20
358 391 1.509923 GACAGCAAGCAATGGAGCC 59.490 57.895 0.00 0.00 34.23 4.70
412 445 3.459063 GTAGGGTTCGCGGCTCCT 61.459 66.667 6.13 12.99 0.00 3.69
413 446 3.145551 TAGGGTTCGCGGCTCCTC 61.146 66.667 15.92 6.83 0.00 3.71
416 449 4.083862 GGTTCGCGGCTCCTCCTT 62.084 66.667 6.13 0.00 0.00 3.36
417 450 2.815647 GTTCGCGGCTCCTCCTTG 60.816 66.667 6.13 0.00 0.00 3.61
421 454 4.847444 GCGGCTCCTCCTTGCTCC 62.847 72.222 0.00 0.00 0.00 4.70
422 455 3.080121 CGGCTCCTCCTTGCTCCT 61.080 66.667 0.00 0.00 0.00 3.69
425 458 3.087666 GCTCCTCCTTGCTCCTCCG 62.088 68.421 0.00 0.00 0.00 4.63
426 459 2.364317 TCCTCCTTGCTCCTCCGG 60.364 66.667 0.00 0.00 0.00 5.14
476 544 4.660938 GGCTTGTTGACCGGCCCT 62.661 66.667 0.00 0.00 38.77 5.19
479 547 1.971695 CTTGTTGACCGGCCCTTCC 60.972 63.158 0.00 0.00 0.00 3.46
588 671 2.606551 GGTTTCTTGCTCTTGCTCTTGC 60.607 50.000 0.00 0.00 40.48 4.01
594 677 1.202734 TGCTCTTGCTCTTGCTCTTGT 60.203 47.619 0.00 0.00 40.48 3.16
595 678 1.878734 GCTCTTGCTCTTGCTCTTGTT 59.121 47.619 0.00 0.00 40.48 2.83
596 679 2.095819 GCTCTTGCTCTTGCTCTTGTTC 60.096 50.000 0.00 0.00 40.48 3.18
597 680 3.401182 CTCTTGCTCTTGCTCTTGTTCT 58.599 45.455 0.00 0.00 40.48 3.01
598 681 3.813443 TCTTGCTCTTGCTCTTGTTCTT 58.187 40.909 0.00 0.00 40.48 2.52
599 682 3.562973 TCTTGCTCTTGCTCTTGTTCTTG 59.437 43.478 0.00 0.00 40.48 3.02
600 683 2.923121 TGCTCTTGCTCTTGTTCTTGT 58.077 42.857 0.00 0.00 40.48 3.16
604 687 1.000938 CTTGCTCTTGTTCTTGTGGCC 60.001 52.381 0.00 0.00 0.00 5.36
660 744 0.179129 CCTTTGATTGATGGTGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
662 746 2.540736 TTTGATTGATGGTGCGGCGC 62.541 55.000 27.44 27.44 0.00 6.53
684 768 1.537990 CCTTCTTTTGGCCGTTTGGTG 60.538 52.381 0.00 0.00 37.67 4.17
782 866 2.507102 CCGAGCTCGTCAATGCGT 60.507 61.111 32.41 0.00 37.74 5.24
797 881 1.371758 GCGTTCGCTCACAGAGTCA 60.372 57.895 9.99 0.00 31.39 3.41
858 942 2.433318 GCCAGGAGCACGTCTGAC 60.433 66.667 3.69 0.00 42.97 3.51
859 943 2.936912 GCCAGGAGCACGTCTGACT 61.937 63.158 6.21 0.00 42.97 3.41
860 944 1.214062 CCAGGAGCACGTCTGACTC 59.786 63.158 6.21 0.39 33.11 3.36
870 1023 3.433709 CACGTCTGACTCTGATCATCAC 58.566 50.000 6.21 0.00 0.00 3.06
884 1037 1.086067 CATCACAGCAGGCCGTGTAG 61.086 60.000 7.97 4.31 34.66 2.74
900 1066 6.461788 GGCCGTGTAGTAGTAGTAGTAGTAGT 60.462 46.154 5.34 5.34 0.00 2.73
948 1131 2.480419 CGTGGGATGTTGTTCTCTGAAC 59.520 50.000 3.74 3.74 0.00 3.18
956 1139 3.927758 TGTTGTTCTCTGAACGAACGAAA 59.072 39.130 0.14 0.00 42.73 3.46
957 1140 4.032445 TGTTGTTCTCTGAACGAACGAAAG 59.968 41.667 0.14 0.00 42.73 2.62
958 1141 4.036567 TGTTCTCTGAACGAACGAAAGA 57.963 40.909 0.14 0.51 42.73 2.52
959 1142 4.042398 TGTTCTCTGAACGAACGAAAGAG 58.958 43.478 0.14 9.49 42.73 2.85
969 1152 1.131315 GAACGAAAGAGGAATGCAGGC 59.869 52.381 0.00 0.00 0.00 4.85
986 1169 1.407258 AGGCTCATCTTCTCAGCGTAC 59.593 52.381 0.00 0.00 33.66 3.67
988 1172 1.471964 CTCATCTTCTCAGCGTACGC 58.528 55.000 32.17 32.17 42.33 4.42
998 1182 3.474806 GCGTACGCTCTGTGCAAT 58.525 55.556 31.95 0.00 43.06 3.56
999 1183 1.059369 GCGTACGCTCTGTGCAATG 59.941 57.895 31.95 0.00 43.06 2.82
1000 1184 1.351430 GCGTACGCTCTGTGCAATGA 61.351 55.000 31.95 0.00 43.06 2.57
1001 1185 1.280982 CGTACGCTCTGTGCAATGAT 58.719 50.000 0.52 0.00 43.06 2.45
1013 1197 2.486951 GCAATGATGATGCAGGTGTC 57.513 50.000 0.00 0.00 43.29 3.67
1053 1237 1.741770 GACGGCCTACAGCAACCAG 60.742 63.158 0.00 0.00 46.50 4.00
1125 1309 4.492160 TCCGTGCTCATCGGCGTC 62.492 66.667 6.85 0.00 46.49 5.19
1201 1387 5.195940 AGTTGATGATGATTGTAACCCCTG 58.804 41.667 0.00 0.00 0.00 4.45
1208 1394 2.910319 TGATTGTAACCCCTGTGCTACT 59.090 45.455 0.00 0.00 0.00 2.57
1210 1396 4.532916 TGATTGTAACCCCTGTGCTACTTA 59.467 41.667 0.00 0.00 0.00 2.24
1229 1415 7.814587 GCTACTTATTTCTGCCTTGTTGATTTT 59.185 33.333 0.00 0.00 0.00 1.82
1311 1498 2.419457 TTTACACCACACCCCTAGGA 57.581 50.000 11.48 0.00 36.73 2.94
1369 1560 4.222124 AGTTGCCACAAATAGGACTAGG 57.778 45.455 0.00 0.00 0.00 3.02
1376 1568 7.016914 TGCCACAAATAGGACTAGGTAGATAT 58.983 38.462 0.00 0.00 0.00 1.63
1488 1680 7.713507 AGTTAAAGTGCTGTTGAACATAGTACA 59.286 33.333 0.00 0.00 30.75 2.90
1489 1681 6.545504 AAAGTGCTGTTGAACATAGTACAG 57.454 37.500 0.00 0.00 40.65 2.74
1490 1682 4.569943 AGTGCTGTTGAACATAGTACAGG 58.430 43.478 0.00 0.00 38.68 4.00
1524 1716 7.905604 TTTCCACTTCACTACACATATTCTG 57.094 36.000 0.00 0.00 0.00 3.02
1527 1719 5.812642 CCACTTCACTACACATATTCTGGAC 59.187 44.000 0.00 0.00 0.00 4.02
1530 1722 7.223582 CACTTCACTACACATATTCTGGACATC 59.776 40.741 0.00 0.00 0.00 3.06
1531 1723 5.831997 TCACTACACATATTCTGGACATCG 58.168 41.667 0.00 0.00 0.00 3.84
1551 1743 5.382573 TCGTTGCAATTTTAACTTTGTGC 57.617 34.783 0.59 0.00 0.00 4.57
1552 1744 4.864806 TCGTTGCAATTTTAACTTTGTGCA 59.135 33.333 0.59 0.00 40.04 4.57
1553 1745 5.348724 TCGTTGCAATTTTAACTTTGTGCAA 59.651 32.000 0.59 4.86 46.50 4.08
1566 1758 6.704512 ACTTTGTGCAAGTTTTAACAAGTG 57.295 33.333 0.00 0.00 43.89 3.16
1567 1759 5.637387 ACTTTGTGCAAGTTTTAACAAGTGG 59.363 36.000 0.00 0.00 43.89 4.00
1568 1760 3.516615 TGTGCAAGTTTTAACAAGTGGC 58.483 40.909 0.00 0.00 0.00 5.01
1569 1761 3.194542 TGTGCAAGTTTTAACAAGTGGCT 59.805 39.130 0.00 0.00 0.00 4.75
1570 1762 3.796717 GTGCAAGTTTTAACAAGTGGCTC 59.203 43.478 0.00 0.00 0.00 4.70
1574 1766 6.127591 TGCAAGTTTTAACAAGTGGCTCTTTA 60.128 34.615 0.00 0.00 33.63 1.85
1586 1778 6.025749 AGTGGCTCTTTAAATAAGTTTGCC 57.974 37.500 0.00 0.00 38.42 4.52
1641 1833 7.716799 AGTATCTCTCTCAAGTTGAGTCAAT 57.283 36.000 27.83 19.44 44.58 2.57
1648 1840 6.258727 TCTCTCAAGTTGAGTCAATTTGTGTC 59.741 38.462 29.39 9.45 44.58 3.67
1653 1845 4.580580 AGTTGAGTCAATTTGTGTCCCTTC 59.419 41.667 9.18 0.00 0.00 3.46
1727 1935 5.123979 GTGACTCAACCTCCAACCATATTTC 59.876 44.000 0.00 0.00 0.00 2.17
1774 1982 9.468532 AACAATTTTCTCAGAACTTCTAAATGC 57.531 29.630 0.00 0.00 0.00 3.56
1789 1998 8.349983 ACTTCTAAATGCGACACAATTTACTTT 58.650 29.630 0.00 0.00 0.00 2.66
1840 2049 1.153353 ATTTACACCAGCGTCAACCG 58.847 50.000 0.00 0.00 40.40 4.44
1857 2066 0.526524 CCGCTTTTGACGCCACAAAA 60.527 50.000 12.74 12.74 44.08 2.44
1859 2068 0.927537 GCTTTTGACGCCACAAAACC 59.072 50.000 10.32 3.26 42.33 3.27
1860 2069 1.737363 GCTTTTGACGCCACAAAACCA 60.737 47.619 10.32 0.00 42.33 3.67
1861 2070 2.192624 CTTTTGACGCCACAAAACCAG 58.807 47.619 10.32 0.85 42.33 4.00
1862 2071 1.178276 TTTGACGCCACAAAACCAGT 58.822 45.000 0.00 0.00 36.92 4.00
1863 2072 1.178276 TTGACGCCACAAAACCAGTT 58.822 45.000 0.00 0.00 0.00 3.16
1864 2073 0.453793 TGACGCCACAAAACCAGTTG 59.546 50.000 0.00 0.00 34.52 3.16
1865 2074 0.869880 GACGCCACAAAACCAGTTGC 60.870 55.000 0.00 0.00 31.29 4.17
1866 2075 1.319614 ACGCCACAAAACCAGTTGCT 61.320 50.000 0.00 0.00 31.29 3.91
1867 2076 0.665835 CGCCACAAAACCAGTTGCTA 59.334 50.000 0.00 0.00 31.29 3.49
1868 2077 1.066303 CGCCACAAAACCAGTTGCTAA 59.934 47.619 0.00 0.00 31.29 3.09
1869 2078 2.469826 GCCACAAAACCAGTTGCTAAC 58.530 47.619 0.00 0.00 31.29 2.34
1870 2079 2.801699 GCCACAAAACCAGTTGCTAACC 60.802 50.000 0.00 0.00 31.29 2.85
1871 2080 2.428890 CCACAAAACCAGTTGCTAACCA 59.571 45.455 0.00 0.00 31.29 3.67
1872 2081 3.069443 CCACAAAACCAGTTGCTAACCAT 59.931 43.478 0.00 0.00 31.29 3.55
1873 2082 4.298332 CACAAAACCAGTTGCTAACCATC 58.702 43.478 0.00 0.00 31.29 3.51
1874 2083 3.320826 ACAAAACCAGTTGCTAACCATCC 59.679 43.478 0.00 0.00 31.29 3.51
1875 2084 2.969821 AACCAGTTGCTAACCATCCA 57.030 45.000 0.00 0.00 0.00 3.41
1876 2085 3.456380 AACCAGTTGCTAACCATCCAT 57.544 42.857 0.00 0.00 0.00 3.41
1877 2086 3.456380 ACCAGTTGCTAACCATCCATT 57.544 42.857 0.00 0.00 0.00 3.16
1878 2087 3.778265 ACCAGTTGCTAACCATCCATTT 58.222 40.909 0.00 0.00 0.00 2.32
1879 2088 3.511146 ACCAGTTGCTAACCATCCATTTG 59.489 43.478 0.00 0.00 0.00 2.32
1880 2089 3.514645 CAGTTGCTAACCATCCATTTGC 58.485 45.455 0.00 0.00 0.00 3.68
1881 2090 3.056678 CAGTTGCTAACCATCCATTTGCA 60.057 43.478 0.00 0.00 36.28 4.08
1882 2091 3.770933 AGTTGCTAACCATCCATTTGCAT 59.229 39.130 0.00 0.00 37.58 3.96
1883 2092 4.955450 AGTTGCTAACCATCCATTTGCATA 59.045 37.500 0.00 0.00 37.58 3.14
1884 2093 5.599656 AGTTGCTAACCATCCATTTGCATAT 59.400 36.000 0.00 0.00 37.58 1.78
1885 2094 6.098695 AGTTGCTAACCATCCATTTGCATATT 59.901 34.615 0.00 0.00 37.58 1.28
1886 2095 7.287466 AGTTGCTAACCATCCATTTGCATATTA 59.713 33.333 0.00 0.00 37.58 0.98
1887 2096 6.980593 TGCTAACCATCCATTTGCATATTAC 58.019 36.000 0.00 0.00 33.76 1.89
1888 2097 6.777091 TGCTAACCATCCATTTGCATATTACT 59.223 34.615 0.00 0.00 33.76 2.24
1933 2172 7.991460 AGGTTATGTTTTATCCTGTAGGCTTAC 59.009 37.037 0.00 0.00 34.44 2.34
1936 2175 6.229936 TGTTTTATCCTGTAGGCTTACGAT 57.770 37.500 1.16 2.09 34.44 3.73
2054 2293 7.613801 AGCTAGCTAGTACATATATGTTGCTCT 59.386 37.037 22.90 16.84 41.97 4.09
2148 2387 0.376152 CCAGTGCACATGCGATCTTC 59.624 55.000 21.04 0.00 45.83 2.87
2184 2423 9.066939 GTATCAGTATATCTTGTTGCATCTACG 57.933 37.037 0.00 0.00 0.00 3.51
2196 2435 4.736126 TGCATCTACGGATCTTTTCTCA 57.264 40.909 0.00 0.00 0.00 3.27
2596 2923 6.429791 TTTGTCAACAGTCTCGAAATTTGA 57.570 33.333 0.00 0.00 0.00 2.69
2898 3225 1.008309 GTCGAGCGCCTACCTGATC 60.008 63.158 2.29 0.00 0.00 2.92
2973 3300 8.397906 TGTCTTGAATGTTCTGTAAACAAAGAG 58.602 33.333 4.58 0.00 30.03 2.85
3045 3372 7.742089 CAGTAGAAATTGAAGAACTGCTTTACG 59.258 37.037 0.00 0.00 36.83 3.18
3076 3403 2.654749 TGAGTAACCTCATGCAGTCG 57.345 50.000 0.00 0.00 42.80 4.18
3084 3411 4.737855 ACCTCATGCAGTCGTATAGTTT 57.262 40.909 0.00 0.00 0.00 2.66
3085 3412 5.086104 ACCTCATGCAGTCGTATAGTTTT 57.914 39.130 0.00 0.00 0.00 2.43
3086 3413 5.488341 ACCTCATGCAGTCGTATAGTTTTT 58.512 37.500 0.00 0.00 0.00 1.94
3278 3605 6.159398 AGGTACTGGAGATCTTCATTGGAATT 59.841 38.462 3.55 0.00 37.18 2.17
3300 3627 5.796350 TCGCTAATTCAGTTTTCCTTAGC 57.204 39.130 0.00 0.00 40.39 3.09
3329 3656 4.202535 ACATCCATATGCCATCTGACACAT 60.203 41.667 0.00 0.00 36.50 3.21
3524 3851 0.319211 TGCGGACCAGAAGTACAACG 60.319 55.000 0.00 0.00 0.00 4.10
3568 3895 2.918571 ACTGCGTGTGACCTGAATG 58.081 52.632 0.00 0.00 0.00 2.67
3627 3954 1.334689 GGAAGTACAACGCCAACTTGC 60.335 52.381 0.00 0.00 33.72 4.01
3642 3969 0.031178 CTTGCTTGGTGTTCCTGCAC 59.969 55.000 0.00 0.00 40.89 4.57
3710 4037 7.871463 GCGTAACTAGGGAAAGTGAATATGTAT 59.129 37.037 0.00 0.00 0.00 2.29
3746 4073 6.583562 ACAAGTTAGATTAGGCTAAATCGCT 58.416 36.000 11.59 8.88 40.19 4.93
3802 4130 3.334583 TGGCATGTACTGAAGTTCCTC 57.665 47.619 0.00 0.00 0.00 3.71
3932 4260 7.453126 TGTTGTTATTCCTGGGATGTGTAAAAT 59.547 33.333 0.00 0.00 0.00 1.82
3983 4311 1.176527 CCCCTGCACATTACCTGTTG 58.823 55.000 0.00 0.00 35.29 3.33
3984 4312 1.547675 CCCCTGCACATTACCTGTTGT 60.548 52.381 0.00 0.00 35.29 3.32
3985 4313 2.238521 CCCTGCACATTACCTGTTGTT 58.761 47.619 0.00 0.00 35.29 2.83
4076 4405 4.122776 CCAAACTGATCCCATCGAACTAG 58.877 47.826 0.00 0.00 0.00 2.57
4080 4409 5.713792 ACTGATCCCATCGAACTAGTATG 57.286 43.478 0.00 0.00 0.00 2.39
4095 4424 7.044249 CGAACTAGTATGAAATTCCTACACACG 60.044 40.741 10.27 5.63 0.00 4.49
4099 4428 2.063266 TGAAATTCCTACACACGCGAC 58.937 47.619 15.93 0.00 0.00 5.19
4113 4442 2.598632 GCGACGCAGCTGTGTTCTT 61.599 57.895 31.98 11.19 39.12 2.52
4126 4455 4.982295 GCTGTGTTCTTTGTTGAATAACCC 59.018 41.667 0.00 0.00 35.92 4.11
4167 4496 7.054491 ACATCAAACTTAGGAGCAACAATTT 57.946 32.000 0.00 0.00 0.00 1.82
4239 4590 0.255890 AGCGGCATTCAAGTATGGGT 59.744 50.000 1.45 0.00 0.00 4.51
4283 4634 2.289547 CGAAAAAGAAAAGACAGGCGGA 59.710 45.455 0.00 0.00 0.00 5.54
4338 4690 0.729690 GGATCAAGAGGCGCTTTCAC 59.270 55.000 7.64 0.00 33.60 3.18
4400 4752 5.642063 AGACGACGAATGTGACCAAATTTAT 59.358 36.000 0.00 0.00 0.00 1.40
4478 4830 3.782443 GAGAACCATCCCCGCCGT 61.782 66.667 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.695825 GTGGGGAGGGAGGGAGGA 61.696 72.222 0.00 0.00 0.00 3.71
24 25 4.024984 TGTGGGGAGGGAGGGAGG 62.025 72.222 0.00 0.00 0.00 4.30
30 31 2.039298 TGGTTGTGTGGGGAGGGA 60.039 61.111 0.00 0.00 0.00 4.20
34 35 1.282653 TTCCTGTGGTTGTGTGGGGA 61.283 55.000 0.00 0.00 0.00 4.81
50 56 1.065564 AGTGAGATCAAGCTGGCTTCC 60.066 52.381 4.73 0.00 33.42 3.46
61 67 2.995939 CGCAGTTTAGCAAGTGAGATCA 59.004 45.455 0.00 0.00 35.67 2.92
80 96 1.949631 CGGCGAGTAGGATTTCCGC 60.950 63.158 0.00 0.00 44.45 5.54
81 97 0.594284 GACGGCGAGTAGGATTTCCG 60.594 60.000 16.62 0.00 42.08 4.30
82 98 0.458669 TGACGGCGAGTAGGATTTCC 59.541 55.000 16.62 0.00 0.00 3.13
83 99 1.557651 GTGACGGCGAGTAGGATTTC 58.442 55.000 16.62 0.00 0.00 2.17
84 100 0.179145 CGTGACGGCGAGTAGGATTT 60.179 55.000 16.62 0.00 0.00 2.17
85 101 1.028330 TCGTGACGGCGAGTAGGATT 61.028 55.000 16.62 0.00 35.83 3.01
86 102 0.818445 ATCGTGACGGCGAGTAGGAT 60.818 55.000 16.62 12.42 44.43 3.24
87 103 1.450848 ATCGTGACGGCGAGTAGGA 60.451 57.895 16.62 10.59 44.43 2.94
88 104 1.298413 CATCGTGACGGCGAGTAGG 60.298 63.158 16.62 5.02 44.43 3.18
89 105 1.298413 CCATCGTGACGGCGAGTAG 60.298 63.158 16.62 1.98 44.43 2.57
90 106 1.588824 AACCATCGTGACGGCGAGTA 61.589 55.000 16.62 0.00 44.43 2.59
94 110 0.575390 GATAAACCATCGTGACGGCG 59.425 55.000 4.80 4.80 0.00 6.46
105 121 3.417101 ACTGATTTGGTGCGATAAACCA 58.583 40.909 0.00 0.00 46.01 3.67
162 178 4.802051 CCACCACCCATCCAGCGG 62.802 72.222 0.00 0.00 0.00 5.52
181 202 1.523758 TGAAGAAGGAAAAGCTCGGC 58.476 50.000 0.00 0.00 0.00 5.54
208 229 4.079154 AGGGAAGGGGAGGAAAAATATGTC 60.079 45.833 0.00 0.00 0.00 3.06
209 230 3.864770 AGGGAAGGGGAGGAAAAATATGT 59.135 43.478 0.00 0.00 0.00 2.29
210 231 4.218312 CAGGGAAGGGGAGGAAAAATATG 58.782 47.826 0.00 0.00 0.00 1.78
211 232 3.864770 ACAGGGAAGGGGAGGAAAAATAT 59.135 43.478 0.00 0.00 0.00 1.28
399 432 4.083862 AAGGAGGAGCCGCGAACC 62.084 66.667 8.23 7.97 43.43 3.62
401 434 4.760047 GCAAGGAGGAGCCGCGAA 62.760 66.667 8.23 0.00 43.43 4.70
404 437 4.847444 GGAGCAAGGAGGAGCCGC 62.847 72.222 0.00 0.00 43.43 6.53
405 438 3.080121 AGGAGCAAGGAGGAGCCG 61.080 66.667 0.00 0.00 43.43 5.52
406 439 2.741055 GGAGGAGCAAGGAGGAGCC 61.741 68.421 0.00 0.00 0.00 4.70
407 440 2.907236 GGAGGAGCAAGGAGGAGC 59.093 66.667 0.00 0.00 0.00 4.70
425 458 4.120755 CTCTTGCAGGGGAGGGCC 62.121 72.222 0.00 0.00 0.00 5.80
426 459 4.120755 CCTCTTGCAGGGGAGGGC 62.121 72.222 18.73 0.00 43.78 5.19
557 640 1.533033 CAAGAAACCCCACCCACCC 60.533 63.158 0.00 0.00 0.00 4.61
558 641 2.207229 GCAAGAAACCCCACCCACC 61.207 63.158 0.00 0.00 0.00 4.61
559 642 1.152546 AGCAAGAAACCCCACCCAC 60.153 57.895 0.00 0.00 0.00 4.61
560 643 1.152830 GAGCAAGAAACCCCACCCA 59.847 57.895 0.00 0.00 0.00 4.51
588 671 1.237285 CCCGGCCACAAGAACAAGAG 61.237 60.000 2.24 0.00 0.00 2.85
594 677 2.747686 GAGACCCGGCCACAAGAA 59.252 61.111 2.24 0.00 0.00 2.52
595 678 3.319198 GGAGACCCGGCCACAAGA 61.319 66.667 2.24 0.00 0.00 3.02
596 679 3.316573 GAGGAGACCCGGCCACAAG 62.317 68.421 2.24 0.00 37.58 3.16
597 680 3.319198 GAGGAGACCCGGCCACAA 61.319 66.667 2.24 0.00 37.58 3.33
782 866 0.319040 GCTGTGACTCTGTGAGCGAA 60.319 55.000 0.00 0.00 32.04 4.70
812 896 2.175621 TGATCGAAGCATGGCGCAG 61.176 57.895 10.83 0.00 46.13 5.18
850 934 3.084786 TGTGATGATCAGAGTCAGACGT 58.915 45.455 0.09 0.00 0.00 4.34
858 942 1.584175 GCCTGCTGTGATGATCAGAG 58.416 55.000 14.60 14.60 40.38 3.35
859 943 0.179702 GGCCTGCTGTGATGATCAGA 59.820 55.000 0.09 0.00 35.20 3.27
860 944 1.158484 CGGCCTGCTGTGATGATCAG 61.158 60.000 0.00 0.00 36.18 2.90
870 1023 1.065701 CTACTACTACACGGCCTGCTG 59.934 57.143 0.00 0.00 0.00 4.41
884 1037 4.317698 CGCACGCACTACTACTACTACTAC 60.318 50.000 0.00 0.00 0.00 2.73
916 1099 2.656069 ATCCCACGGAACACCTCGG 61.656 63.158 0.00 0.00 34.34 4.63
919 1102 0.250727 CAACATCCCACGGAACACCT 60.251 55.000 0.00 0.00 34.34 4.00
948 1131 1.394917 CCTGCATTCCTCTTTCGTTCG 59.605 52.381 0.00 0.00 0.00 3.95
956 1139 1.509373 AGATGAGCCTGCATTCCTCT 58.491 50.000 9.06 3.55 0.00 3.69
957 1140 2.158784 AGAAGATGAGCCTGCATTCCTC 60.159 50.000 0.00 0.00 0.00 3.71
958 1141 1.845143 AGAAGATGAGCCTGCATTCCT 59.155 47.619 0.00 0.00 0.00 3.36
959 1142 2.220313 GAGAAGATGAGCCTGCATTCC 58.780 52.381 0.00 0.00 0.00 3.01
969 1152 1.471964 GCGTACGCTGAGAAGATGAG 58.528 55.000 31.95 0.00 38.26 2.90
988 1172 2.033424 CCTGCATCATCATTGCACAGAG 59.967 50.000 0.00 0.00 44.73 3.35
995 1179 3.692593 TCAAGACACCTGCATCATCATTG 59.307 43.478 0.00 0.00 0.00 2.82
996 1180 3.959293 TCAAGACACCTGCATCATCATT 58.041 40.909 0.00 0.00 0.00 2.57
997 1181 3.639672 TCAAGACACCTGCATCATCAT 57.360 42.857 0.00 0.00 0.00 2.45
998 1182 3.538591 GATCAAGACACCTGCATCATCA 58.461 45.455 0.00 0.00 0.00 3.07
999 1183 2.877168 GGATCAAGACACCTGCATCATC 59.123 50.000 0.00 0.00 0.00 2.92
1000 1184 2.744166 CGGATCAAGACACCTGCATCAT 60.744 50.000 0.00 0.00 0.00 2.45
1001 1185 1.405933 CGGATCAAGACACCTGCATCA 60.406 52.381 0.00 0.00 0.00 3.07
1036 1220 2.347490 CTGGTTGCTGTAGGCCGT 59.653 61.111 0.00 0.00 40.92 5.68
1053 1237 3.344215 CTCATCATCGCCTGCGCC 61.344 66.667 4.18 0.00 39.59 6.53
1125 1309 3.902881 AGTACCATCTTGCAGAGGAAG 57.097 47.619 3.27 0.00 0.00 3.46
1201 1387 5.181245 TCAACAAGGCAGAAATAAGTAGCAC 59.819 40.000 0.00 0.00 0.00 4.40
1253 1439 5.116180 CCAAGCTCTTCGATATAACCAACA 58.884 41.667 0.00 0.00 0.00 3.33
1290 1477 3.261962 TCCTAGGGGTGTGGTGTAAAAT 58.738 45.455 9.46 0.00 0.00 1.82
1311 1498 1.004979 TGGGCGCCCTAGTGTTATTTT 59.995 47.619 43.34 0.00 36.94 1.82
1394 1586 4.994852 TGTGCACAGTTAAGACCATTAGTC 59.005 41.667 17.42 0.00 46.71 2.59
1488 1680 7.317722 AGTGAAGTGGAAAATTAGTACTCCT 57.682 36.000 0.00 0.00 0.00 3.69
1489 1681 8.092687 TGTAGTGAAGTGGAAAATTAGTACTCC 58.907 37.037 0.00 0.00 0.00 3.85
1490 1682 8.923683 GTGTAGTGAAGTGGAAAATTAGTACTC 58.076 37.037 0.00 0.00 0.00 2.59
1505 1697 6.605471 TGTCCAGAATATGTGTAGTGAAGT 57.395 37.500 0.00 0.00 0.00 3.01
1524 1716 6.200097 ACAAAGTTAAAATTGCAACGATGTCC 59.800 34.615 0.00 0.00 0.00 4.02
1527 1719 5.840267 GCACAAAGTTAAAATTGCAACGATG 59.160 36.000 0.00 0.00 0.00 3.84
1530 1722 5.136250 TGCACAAAGTTAAAATTGCAACG 57.864 34.783 0.00 0.00 37.05 4.10
1551 1743 8.696410 TTTAAAGAGCCACTTGTTAAAACTTG 57.304 30.769 0.00 0.00 38.98 3.16
1558 1750 9.959749 CAAACTTATTTAAAGAGCCACTTGTTA 57.040 29.630 0.00 0.00 38.98 2.41
1559 1751 7.438160 GCAAACTTATTTAAAGAGCCACTTGTT 59.562 33.333 0.00 0.00 38.98 2.83
1560 1752 6.923508 GCAAACTTATTTAAAGAGCCACTTGT 59.076 34.615 0.00 0.00 38.98 3.16
1561 1753 6.366061 GGCAAACTTATTTAAAGAGCCACTTG 59.634 38.462 5.45 4.54 38.98 3.16
1562 1754 6.041523 TGGCAAACTTATTTAAAGAGCCACTT 59.958 34.615 8.24 0.00 43.93 3.16
1563 1755 5.538433 TGGCAAACTTATTTAAAGAGCCACT 59.462 36.000 8.24 0.00 43.93 4.00
1564 1756 5.778862 TGGCAAACTTATTTAAAGAGCCAC 58.221 37.500 8.24 0.00 43.93 5.01
1565 1757 6.412362 TTGGCAAACTTATTTAAAGAGCCA 57.588 33.333 8.24 8.24 46.76 4.75
1566 1758 6.929049 ACTTTGGCAAACTTATTTAAAGAGCC 59.071 34.615 8.93 3.72 39.95 4.70
1567 1759 7.946655 ACTTTGGCAAACTTATTTAAAGAGC 57.053 32.000 8.93 0.00 30.45 4.09
1574 1766 8.670135 GGTGTTAAAACTTTGGCAAACTTATTT 58.330 29.630 8.93 9.91 0.00 1.40
1636 1828 4.338118 TGAACAGAAGGGACACAAATTGAC 59.662 41.667 0.00 0.00 0.00 3.18
1641 1833 6.040391 CCTTAAATGAACAGAAGGGACACAAA 59.960 38.462 0.00 0.00 35.74 2.83
1648 1840 7.338710 TCTATGTCCTTAAATGAACAGAAGGG 58.661 38.462 10.75 0.00 39.20 3.95
1653 1845 9.219603 TCTTGTTCTATGTCCTTAAATGAACAG 57.780 33.333 0.00 0.00 41.70 3.16
1715 1923 5.126067 ACGAAGATGGAGAAATATGGTTGG 58.874 41.667 0.00 0.00 0.00 3.77
1774 1982 5.688823 TGCTGATGAAAGTAAATTGTGTCG 58.311 37.500 0.00 0.00 0.00 4.35
1857 2066 3.456380 AATGGATGGTTAGCAACTGGT 57.544 42.857 0.00 0.00 0.00 4.00
1859 2068 3.056678 TGCAAATGGATGGTTAGCAACTG 60.057 43.478 0.00 0.00 0.00 3.16
1860 2069 3.164268 TGCAAATGGATGGTTAGCAACT 58.836 40.909 0.00 0.00 0.00 3.16
1861 2070 3.591196 TGCAAATGGATGGTTAGCAAC 57.409 42.857 0.00 0.00 0.00 4.17
1862 2071 6.482898 AATATGCAAATGGATGGTTAGCAA 57.517 33.333 0.00 0.00 33.91 3.91
1863 2072 6.777091 AGTAATATGCAAATGGATGGTTAGCA 59.223 34.615 0.00 0.00 34.78 3.49
1864 2073 7.219484 AGTAATATGCAAATGGATGGTTAGC 57.781 36.000 0.00 0.00 0.00 3.09
1865 2074 9.507329 ACTAGTAATATGCAAATGGATGGTTAG 57.493 33.333 0.00 0.00 0.00 2.34
1866 2075 9.860650 AACTAGTAATATGCAAATGGATGGTTA 57.139 29.630 0.00 0.00 0.00 2.85
1867 2076 8.766994 AACTAGTAATATGCAAATGGATGGTT 57.233 30.769 0.00 0.00 0.00 3.67
1868 2077 8.766994 AAACTAGTAATATGCAAATGGATGGT 57.233 30.769 0.00 0.00 0.00 3.55
1869 2078 9.071276 AGAAACTAGTAATATGCAAATGGATGG 57.929 33.333 0.00 0.00 0.00 3.51
1872 2081 9.120538 GGAAGAAACTAGTAATATGCAAATGGA 57.879 33.333 0.00 0.00 0.00 3.41
1873 2082 9.125026 AGGAAGAAACTAGTAATATGCAAATGG 57.875 33.333 0.00 0.00 0.00 3.16
1874 2083 9.941664 CAGGAAGAAACTAGTAATATGCAAATG 57.058 33.333 0.00 0.00 0.00 2.32
1875 2084 9.686683 ACAGGAAGAAACTAGTAATATGCAAAT 57.313 29.630 0.00 0.00 0.00 2.32
1876 2085 8.946085 CACAGGAAGAAACTAGTAATATGCAAA 58.054 33.333 0.00 0.00 0.00 3.68
1877 2086 8.318412 TCACAGGAAGAAACTAGTAATATGCAA 58.682 33.333 0.00 0.00 0.00 4.08
1878 2087 7.764443 GTCACAGGAAGAAACTAGTAATATGCA 59.236 37.037 0.00 0.00 0.00 3.96
1879 2088 7.764443 TGTCACAGGAAGAAACTAGTAATATGC 59.236 37.037 0.00 0.00 0.00 3.14
1880 2089 9.653287 TTGTCACAGGAAGAAACTAGTAATATG 57.347 33.333 0.00 0.00 0.00 1.78
1882 2091 9.706691 CTTTGTCACAGGAAGAAACTAGTAATA 57.293 33.333 0.00 0.00 0.00 0.98
1883 2092 7.661847 CCTTTGTCACAGGAAGAAACTAGTAAT 59.338 37.037 0.00 0.00 32.41 1.89
1884 2093 6.990349 CCTTTGTCACAGGAAGAAACTAGTAA 59.010 38.462 0.00 0.00 32.41 2.24
1885 2094 6.099269 ACCTTTGTCACAGGAAGAAACTAGTA 59.901 38.462 12.13 0.00 35.14 1.82
1886 2095 5.104485 ACCTTTGTCACAGGAAGAAACTAGT 60.104 40.000 12.13 0.00 35.14 2.57
1887 2096 5.368989 ACCTTTGTCACAGGAAGAAACTAG 58.631 41.667 12.13 0.00 35.14 2.57
1888 2097 5.367945 ACCTTTGTCACAGGAAGAAACTA 57.632 39.130 12.13 0.00 35.14 2.24
1933 2172 2.603412 GCTCAGTATCCGTGTGAGATCG 60.603 54.545 2.77 0.00 40.21 3.69
1936 2175 2.017782 GAGCTCAGTATCCGTGTGAGA 58.982 52.381 9.40 0.00 40.21 3.27
2148 2387 5.889219 AGATATACTGATACTGCTGCGATG 58.111 41.667 0.00 0.00 0.00 3.84
2196 2435 7.149202 TGTAATAGGCCCATTAAGTTGATCT 57.851 36.000 5.10 0.00 0.00 2.75
2201 2440 5.768164 CGGAATGTAATAGGCCCATTAAGTT 59.232 40.000 5.10 3.84 0.00 2.66
2315 2641 3.132646 AGCAATGAAACAAAAGTCCAGCA 59.867 39.130 0.00 0.00 0.00 4.41
2480 2806 9.944376 ATTGAAGTTAAATCTAGTTCACTAGCA 57.056 29.630 8.88 0.15 44.24 3.49
2529 2855 9.577110 CGAATCATTGCCAAATTATAGCATATT 57.423 29.630 0.00 0.90 36.20 1.28
2596 2923 2.158559 TGCAAGTCACACACAAGTTGT 58.841 42.857 1.64 1.64 39.97 3.32
2807 3134 4.798882 ACAATCAACACTACAGGGGAAAA 58.201 39.130 0.00 0.00 0.00 2.29
2812 3139 4.699735 TGCATTACAATCAACACTACAGGG 59.300 41.667 0.00 0.00 0.00 4.45
3012 3339 8.441608 CAGTTCTTCAATTTCTACTGATCTGTG 58.558 37.037 14.91 5.83 36.07 3.66
3013 3340 7.118971 GCAGTTCTTCAATTTCTACTGATCTGT 59.881 37.037 10.33 10.33 36.07 3.41
3102 3429 2.483014 AGTATAACAACCAAGCGGCA 57.517 45.000 1.45 0.00 34.57 5.69
3103 3430 3.528532 ACTAGTATAACAACCAAGCGGC 58.471 45.455 0.00 0.00 34.57 6.53
3260 3587 4.133078 AGCGAATTCCAATGAAGATCTCC 58.867 43.478 0.00 0.00 33.05 3.71
3278 3605 5.796350 GCTAAGGAAAACTGAATTAGCGA 57.204 39.130 0.00 0.00 39.04 4.93
3300 3627 3.887110 AGATGGCATATGGATGTTGTGTG 59.113 43.478 0.00 0.00 35.30 3.82
3490 3817 0.034059 CCGCAGAGCCTAATCCGATT 59.966 55.000 0.00 0.00 0.00 3.34
3519 3846 1.487558 AGGAACACCCAGTTACGTTGT 59.512 47.619 0.00 0.00 46.20 3.32
3524 3851 0.953960 CGGCAGGAACACCCAGTTAC 60.954 60.000 0.00 0.00 41.51 2.50
3627 3954 0.820891 AGCAGTGCAGGAACACCAAG 60.821 55.000 19.20 0.00 41.67 3.61
3642 3969 1.738350 CATCAAGGTCTCAAGCAGCAG 59.262 52.381 0.00 0.00 0.00 4.24
3683 4010 4.820894 ATTCACTTTCCCTAGTTACGCT 57.179 40.909 0.00 0.00 0.00 5.07
3746 4073 1.209504 CCCAGCTCACCGGAAAATAGA 59.790 52.381 9.46 0.00 0.00 1.98
3802 4130 3.087031 ACACAGATTGCAGGATTGGAAG 58.913 45.455 0.00 0.00 38.08 3.46
3902 4230 3.350219 TCCCAGGAATAACAACAGCTC 57.650 47.619 0.00 0.00 0.00 4.09
3932 4260 3.075283 ACCATGGACACAAATCTACCCAA 59.925 43.478 21.47 0.00 0.00 4.12
3984 4312 9.632807 CGAATATAACAAAATTTGACCAGGAAA 57.367 29.630 13.19 0.00 0.00 3.13
3985 4313 7.757624 GCGAATATAACAAAATTTGACCAGGAA 59.242 33.333 13.19 0.00 0.00 3.36
4076 4405 3.861113 TCGCGTGTGTAGGAATTTCATAC 59.139 43.478 12.98 12.98 34.54 2.39
4080 4409 1.058695 CGTCGCGTGTGTAGGAATTTC 59.941 52.381 5.77 0.00 0.00 2.17
4095 4424 2.105960 AAAGAACACAGCTGCGTCGC 62.106 55.000 15.27 11.10 0.00 5.19
4099 4428 1.063912 TCAACAAAGAACACAGCTGCG 59.936 47.619 15.27 6.98 0.00 5.18
4108 4437 4.443063 GCAACGGGTTATTCAACAAAGAAC 59.557 41.667 0.00 0.00 38.16 3.01
4113 4442 4.762765 AGTATGCAACGGGTTATTCAACAA 59.237 37.500 0.00 0.00 36.29 2.83
4126 4455 4.176271 TGATGTTCAGAGAGTATGCAACG 58.824 43.478 0.00 0.00 0.00 4.10
4175 4504 2.288395 CCTCCAAAGTGGTTGATTGTGC 60.288 50.000 0.00 0.00 39.87 4.57
4230 4581 7.414762 GCGTTTGTCATGTAAATACCCATACTT 60.415 37.037 0.00 0.00 0.00 2.24
4239 4590 6.018542 CGTTCATGCGTTTGTCATGTAAATA 58.981 36.000 0.00 0.00 41.40 1.40
4283 4634 1.671979 TACTCTATGCGCTACCGTGT 58.328 50.000 9.73 3.36 36.67 4.49
4295 4646 8.340002 TCCTGTGCCTTATCTGATATACTCTAT 58.660 37.037 0.00 0.00 0.00 1.98
4338 4690 5.176407 AGAGGAATCTCGACAAACTATCG 57.824 43.478 0.00 0.00 44.47 2.92
4400 4752 0.540454 CTGCTCCTCCTGAAGCATCA 59.460 55.000 0.00 0.00 36.65 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.