Multiple sequence alignment - TraesCS4B01G016200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G016200 chr4B 100.000 3650 0 0 1 3650 11902878 11906527 0.000000e+00 6741.0
1 TraesCS4B01G016200 chr4D 83.939 1239 111 56 1767 2970 6642844 6644029 0.000000e+00 1105.0
2 TraesCS4B01G016200 chr4D 85.036 548 67 9 3111 3649 6644299 6644840 8.910000e-151 544.0
3 TraesCS4B01G016200 chr4D 91.628 215 7 5 968 1180 6642156 6642361 1.660000e-73 287.0
4 TraesCS4B01G016200 chr4D 90.446 157 2 6 3 155 6640954 6641101 1.030000e-45 195.0
5 TraesCS4B01G016200 chr4A 91.879 628 44 3 3022 3649 596770230 596769610 0.000000e+00 870.0
6 TraesCS4B01G016200 chr4A 86.421 788 57 27 1954 2737 596771318 596770577 0.000000e+00 817.0
7 TraesCS4B01G016200 chr4A 92.636 258 4 6 940 1185 596773800 596773546 1.250000e-94 357.0
8 TraesCS4B01G016200 chr4A 93.820 178 9 2 2819 2996 596770545 596770370 2.160000e-67 267.0
9 TraesCS4B01G016200 chr4A 94.118 102 5 1 1779 1880 596772249 596772149 1.760000e-33 154.0
10 TraesCS4B01G016200 chr4A 84.884 172 5 7 3 160 596784300 596784136 1.760000e-33 154.0
11 TraesCS4B01G016200 chr4A 88.235 51 1 4 1644 1689 596772313 596772263 5.090000e-04 56.5
12 TraesCS4B01G016200 chr2A 82.738 840 86 35 1856 2667 703559691 703560499 0.000000e+00 693.0
13 TraesCS4B01G016200 chr3A 83.426 537 44 25 1908 2424 533131426 533130915 1.190000e-124 457.0
14 TraesCS4B01G016200 chr7A 86.824 425 26 13 2249 2667 33148697 33149097 7.190000e-122 448.0
15 TraesCS4B01G016200 chr7A 81.543 363 39 17 1856 2202 33148185 33148535 1.290000e-69 274.0
16 TraesCS4B01G016200 chr1A 83.735 166 27 0 2295 2460 391941338 391941173 1.360000e-34 158.0
17 TraesCS4B01G016200 chr1B 83.133 166 28 0 2295 2460 422346724 422346559 6.310000e-33 152.0
18 TraesCS4B01G016200 chr1D 82.530 166 29 0 2295 2460 311750202 311750037 2.940000e-31 147.0
19 TraesCS4B01G016200 chr7B 93.103 58 3 1 1686 1742 458364477 458364534 2.340000e-12 84.2
20 TraesCS4B01G016200 chr6B 91.525 59 5 0 1686 1744 16434843 16434901 8.400000e-12 82.4
21 TraesCS4B01G016200 chr7D 91.667 60 2 2 1686 1742 8066178 8066237 3.020000e-11 80.5
22 TraesCS4B01G016200 chr7D 91.525 59 3 1 1686 1742 188809845 188809787 3.020000e-11 80.5
23 TraesCS4B01G016200 chr3D 91.525 59 3 1 1686 1742 603942477 603942419 3.020000e-11 80.5
24 TraesCS4B01G016200 chr3D 84.337 83 5 6 1662 1742 8828438 8828514 1.410000e-09 75.0
25 TraesCS4B01G016200 chr2D 91.525 59 3 1 1686 1744 260976091 260976035 3.020000e-11 80.5
26 TraesCS4B01G016200 chr6D 91.379 58 3 1 1685 1742 8551033 8551088 1.090000e-10 78.7
27 TraesCS4B01G016200 chr5A 91.379 58 4 1 1685 1742 588555631 588555687 1.090000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G016200 chr4B 11902878 11906527 3649 False 6741.00 6741 100.000000 1 3650 1 chr4B.!!$F1 3649
1 TraesCS4B01G016200 chr4D 6640954 6644840 3886 False 532.75 1105 87.762250 3 3649 4 chr4D.!!$F1 3646
2 TraesCS4B01G016200 chr4A 596769610 596773800 4190 True 420.25 870 91.184833 940 3649 6 chr4A.!!$R2 2709
3 TraesCS4B01G016200 chr2A 703559691 703560499 808 False 693.00 693 82.738000 1856 2667 1 chr2A.!!$F1 811
4 TraesCS4B01G016200 chr3A 533130915 533131426 511 True 457.00 457 83.426000 1908 2424 1 chr3A.!!$R1 516
5 TraesCS4B01G016200 chr7A 33148185 33149097 912 False 361.00 448 84.183500 1856 2667 2 chr7A.!!$F1 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 273 0.028770 TTTCAGCGCCGAACAAACTG 59.971 50.0 5.35 0.0 0.00 3.16 F
777 930 0.031994 AATTCAGCCGCCAACACAAC 59.968 50.0 0.00 0.0 0.00 3.32 F
1554 2544 0.036105 TAGCTGCAGTCCATGTGGTG 60.036 55.0 16.64 0.0 36.34 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 4178 0.251354 TCTGAAGATGGGCTGACTGC 59.749 55.0 0.00 0.0 41.94 4.40 R
2070 4181 0.532573 TCGTCTGAAGATGGGCTGAC 59.467 55.0 0.00 0.0 0.00 3.51 R
3352 5801 0.179045 AGTTCCATGACCTATGCGCC 60.179 55.0 4.18 0.0 35.37 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 84 2.841160 GCGGCGGTTTTGACCAACT 61.841 57.895 9.78 0.00 0.00 3.16
167 172 2.249309 CGCAGACACGGCAGTTTG 59.751 61.111 0.00 0.00 0.00 2.93
168 173 2.534019 CGCAGACACGGCAGTTTGT 61.534 57.895 0.00 0.00 0.00 2.83
169 174 1.727467 GCAGACACGGCAGTTTGTT 59.273 52.632 0.00 0.00 0.00 2.83
170 175 0.317020 GCAGACACGGCAGTTTGTTC 60.317 55.000 0.00 0.00 0.00 3.18
171 176 0.042188 CAGACACGGCAGTTTGTTCG 60.042 55.000 0.00 0.00 0.00 3.95
172 177 0.461339 AGACACGGCAGTTTGTTCGT 60.461 50.000 0.00 0.00 36.19 3.85
173 178 0.042448 GACACGGCAGTTTGTTCGTC 60.042 55.000 0.00 0.00 33.31 4.20
174 179 1.083657 CACGGCAGTTTGTTCGTCG 60.084 57.895 0.00 0.00 33.31 5.12
181 186 1.952635 GTTTGTTCGTCGCCGTCCT 60.953 57.895 0.00 0.00 35.01 3.85
182 187 1.952133 TTTGTTCGTCGCCGTCCTG 60.952 57.895 0.00 0.00 35.01 3.86
184 189 2.804090 GTTCGTCGCCGTCCTGTC 60.804 66.667 0.00 0.00 35.01 3.51
189 194 1.737008 GTCGCCGTCCTGTCCTTTC 60.737 63.158 0.00 0.00 0.00 2.62
190 195 1.906824 TCGCCGTCCTGTCCTTTCT 60.907 57.895 0.00 0.00 0.00 2.52
195 200 2.417719 CCGTCCTGTCCTTTCTTTCTG 58.582 52.381 0.00 0.00 0.00 3.02
196 201 1.801178 CGTCCTGTCCTTTCTTTCTGC 59.199 52.381 0.00 0.00 0.00 4.26
197 202 2.806745 CGTCCTGTCCTTTCTTTCTGCA 60.807 50.000 0.00 0.00 0.00 4.41
198 203 3.416156 GTCCTGTCCTTTCTTTCTGCAT 58.584 45.455 0.00 0.00 0.00 3.96
199 204 3.190118 GTCCTGTCCTTTCTTTCTGCATG 59.810 47.826 0.00 0.00 0.00 4.06
201 206 2.555325 CTGTCCTTTCTTTCTGCATGCA 59.445 45.455 21.29 21.29 0.00 3.96
202 207 2.294233 TGTCCTTTCTTTCTGCATGCAC 59.706 45.455 18.46 2.69 0.00 4.57
203 208 2.555757 GTCCTTTCTTTCTGCATGCACT 59.444 45.455 18.46 0.00 0.00 4.40
206 211 3.243636 CCTTTCTTTCTGCATGCACTGTT 60.244 43.478 18.46 0.00 0.00 3.16
207 212 3.358707 TTCTTTCTGCATGCACTGTTG 57.641 42.857 18.46 6.94 0.00 3.33
208 213 2.300433 TCTTTCTGCATGCACTGTTGT 58.700 42.857 18.46 0.00 0.00 3.32
209 214 2.291465 TCTTTCTGCATGCACTGTTGTC 59.709 45.455 18.46 0.00 0.00 3.18
211 216 1.516161 TCTGCATGCACTGTTGTCTC 58.484 50.000 18.46 0.00 0.00 3.36
212 217 0.165295 CTGCATGCACTGTTGTCTCG 59.835 55.000 18.46 0.00 0.00 4.04
213 218 0.532640 TGCATGCACTGTTGTCTCGT 60.533 50.000 18.46 0.00 0.00 4.18
214 219 0.110509 GCATGCACTGTTGTCTCGTG 60.111 55.000 14.21 0.00 0.00 4.35
217 222 1.949133 GCACTGTTGTCTCGTGCGA 60.949 57.895 0.00 0.00 43.63 5.10
218 223 1.880601 GCACTGTTGTCTCGTGCGAG 61.881 60.000 14.69 14.69 43.63 5.03
219 224 1.661821 ACTGTTGTCTCGTGCGAGC 60.662 57.895 15.86 11.62 41.71 5.03
220 225 1.372251 CTGTTGTCTCGTGCGAGCT 60.372 57.895 15.86 0.00 41.71 4.09
221 226 1.612469 CTGTTGTCTCGTGCGAGCTG 61.612 60.000 15.86 3.72 41.71 4.24
222 227 2.734723 TTGTCTCGTGCGAGCTGC 60.735 61.111 15.86 9.42 46.70 5.25
239 244 3.923013 CGGAGCCATGGCAATGAA 58.077 55.556 37.18 0.00 44.88 2.57
240 245 1.731700 CGGAGCCATGGCAATGAAG 59.268 57.895 37.18 18.08 44.88 3.02
241 246 1.440476 GGAGCCATGGCAATGAAGC 59.560 57.895 37.18 16.50 44.88 3.86
242 247 1.041447 GGAGCCATGGCAATGAAGCT 61.041 55.000 37.18 15.31 44.88 3.74
243 248 0.384669 GAGCCATGGCAATGAAGCTC 59.615 55.000 37.18 19.89 44.88 4.09
244 249 1.065273 GCCATGGCAATGAAGCTCG 59.935 57.895 32.08 0.00 41.49 5.03
245 250 1.378882 GCCATGGCAATGAAGCTCGA 61.379 55.000 32.08 0.00 41.49 4.04
246 251 0.661552 CCATGGCAATGAAGCTCGAG 59.338 55.000 8.45 8.45 35.67 4.04
247 252 1.376543 CATGGCAATGAAGCTCGAGT 58.623 50.000 15.13 0.00 35.67 4.18
248 253 1.741706 CATGGCAATGAAGCTCGAGTT 59.258 47.619 15.13 4.78 35.67 3.01
249 254 1.896220 TGGCAATGAAGCTCGAGTTT 58.104 45.000 14.85 14.85 34.17 2.66
250 255 2.229792 TGGCAATGAAGCTCGAGTTTT 58.770 42.857 16.03 9.80 34.17 2.43
251 256 2.622942 TGGCAATGAAGCTCGAGTTTTT 59.377 40.909 16.03 4.61 34.17 1.94
252 257 3.237628 GGCAATGAAGCTCGAGTTTTTC 58.762 45.455 16.03 15.51 34.17 2.29
253 258 3.304659 GGCAATGAAGCTCGAGTTTTTCA 60.305 43.478 22.29 22.29 34.42 2.69
254 259 3.910767 GCAATGAAGCTCGAGTTTTTCAG 59.089 43.478 23.43 16.33 33.53 3.02
255 260 3.820777 ATGAAGCTCGAGTTTTTCAGC 57.179 42.857 23.43 11.13 33.53 4.26
256 261 1.526887 TGAAGCTCGAGTTTTTCAGCG 59.473 47.619 16.03 0.00 36.03 5.18
257 262 0.235926 AAGCTCGAGTTTTTCAGCGC 59.764 50.000 15.13 0.00 36.03 5.92
258 263 1.154395 GCTCGAGTTTTTCAGCGCC 60.154 57.895 15.13 0.00 0.00 6.53
259 264 1.130613 CTCGAGTTTTTCAGCGCCG 59.869 57.895 2.29 0.00 0.00 6.46
260 265 1.282248 CTCGAGTTTTTCAGCGCCGA 61.282 55.000 2.29 0.00 0.00 5.54
261 266 0.876777 TCGAGTTTTTCAGCGCCGAA 60.877 50.000 2.29 1.53 0.00 4.30
262 267 0.721483 CGAGTTTTTCAGCGCCGAAC 60.721 55.000 5.35 3.37 0.00 3.95
263 268 0.306533 GAGTTTTTCAGCGCCGAACA 59.693 50.000 5.35 0.00 0.00 3.18
264 269 0.736053 AGTTTTTCAGCGCCGAACAA 59.264 45.000 5.35 2.91 0.00 2.83
265 270 1.133407 AGTTTTTCAGCGCCGAACAAA 59.867 42.857 5.35 7.45 0.00 2.83
266 271 1.254313 GTTTTTCAGCGCCGAACAAAC 59.746 47.619 18.99 18.99 0.00 2.93
267 272 0.736053 TTTTCAGCGCCGAACAAACT 59.264 45.000 5.35 0.00 0.00 2.66
268 273 0.028770 TTTCAGCGCCGAACAAACTG 59.971 50.000 5.35 0.00 0.00 3.16
269 274 1.781025 TTCAGCGCCGAACAAACTGG 61.781 55.000 2.29 0.00 0.00 4.00
270 275 2.203153 AGCGCCGAACAAACTGGT 60.203 55.556 2.29 0.00 0.00 4.00
271 276 2.051345 GCGCCGAACAAACTGGTG 60.051 61.111 0.00 0.00 36.36 4.17
272 277 2.830285 GCGCCGAACAAACTGGTGT 61.830 57.895 0.00 0.00 35.70 4.16
273 278 1.278637 CGCCGAACAAACTGGTGTC 59.721 57.895 0.00 0.00 0.00 3.67
274 279 1.157870 CGCCGAACAAACTGGTGTCT 61.158 55.000 0.00 0.00 0.00 3.41
275 280 0.307760 GCCGAACAAACTGGTGTCTG 59.692 55.000 0.00 0.00 0.00 3.51
276 281 1.663695 CCGAACAAACTGGTGTCTGT 58.336 50.000 0.00 0.00 0.00 3.41
277 282 2.014128 CCGAACAAACTGGTGTCTGTT 58.986 47.619 0.00 0.00 36.76 3.16
278 283 2.031683 CCGAACAAACTGGTGTCTGTTC 59.968 50.000 5.57 5.57 42.66 3.18
279 284 3.319238 GAACAAACTGGTGTCTGTTCG 57.681 47.619 0.59 0.00 38.58 3.95
280 285 2.396590 ACAAACTGGTGTCTGTTCGT 57.603 45.000 0.00 0.00 34.62 3.85
281 286 2.706890 ACAAACTGGTGTCTGTTCGTT 58.293 42.857 0.00 0.00 34.62 3.85
282 287 2.676342 ACAAACTGGTGTCTGTTCGTTC 59.324 45.455 0.00 0.00 34.62 3.95
283 288 2.675844 CAAACTGGTGTCTGTTCGTTCA 59.324 45.455 0.00 0.00 34.62 3.18
284 289 2.910688 ACTGGTGTCTGTTCGTTCAT 57.089 45.000 0.00 0.00 0.00 2.57
285 290 3.194005 ACTGGTGTCTGTTCGTTCATT 57.806 42.857 0.00 0.00 0.00 2.57
286 291 3.541632 ACTGGTGTCTGTTCGTTCATTT 58.458 40.909 0.00 0.00 0.00 2.32
287 292 3.945285 ACTGGTGTCTGTTCGTTCATTTT 59.055 39.130 0.00 0.00 0.00 1.82
288 293 4.201910 ACTGGTGTCTGTTCGTTCATTTTG 60.202 41.667 0.00 0.00 0.00 2.44
289 294 3.942115 TGGTGTCTGTTCGTTCATTTTGA 59.058 39.130 0.00 0.00 0.00 2.69
290 295 4.201871 TGGTGTCTGTTCGTTCATTTTGAC 60.202 41.667 0.00 0.00 0.00 3.18
291 296 3.960002 GTGTCTGTTCGTTCATTTTGACG 59.040 43.478 0.00 0.00 0.00 4.35
292 297 3.866327 TGTCTGTTCGTTCATTTTGACGA 59.134 39.130 0.00 0.00 31.69 4.20
293 298 4.201576 GTCTGTTCGTTCATTTTGACGAC 58.798 43.478 0.00 0.00 32.68 4.34
294 299 3.060807 TCTGTTCGTTCATTTTGACGACG 60.061 43.478 0.00 0.00 33.35 5.12
295 300 2.858941 TGTTCGTTCATTTTGACGACGA 59.141 40.909 0.00 1.47 37.70 4.20
296 301 3.491639 TGTTCGTTCATTTTGACGACGAT 59.508 39.130 0.00 0.00 38.77 3.73
297 302 3.698420 TCGTTCATTTTGACGACGATG 57.302 42.857 0.00 0.00 35.49 3.84
298 303 3.310246 TCGTTCATTTTGACGACGATGA 58.690 40.909 0.00 0.00 35.49 2.92
299 304 3.924073 TCGTTCATTTTGACGACGATGAT 59.076 39.130 0.00 0.00 35.49 2.45
300 305 4.015331 CGTTCATTTTGACGACGATGATG 58.985 43.478 0.00 0.00 33.76 3.07
301 306 4.201580 CGTTCATTTTGACGACGATGATGA 60.202 41.667 0.00 1.26 33.76 2.92
302 307 5.500771 CGTTCATTTTGACGACGATGATGAT 60.501 40.000 0.00 0.00 33.76 2.45
313 318 6.687604 ACGACGATGATGATGATGGTAATTA 58.312 36.000 0.00 0.00 0.00 1.40
316 321 8.112449 CGACGATGATGATGATGGTAATTATTG 58.888 37.037 0.00 0.00 0.00 1.90
317 322 8.853077 ACGATGATGATGATGGTAATTATTGT 57.147 30.769 0.00 0.00 0.00 2.71
318 323 9.288576 ACGATGATGATGATGGTAATTATTGTT 57.711 29.630 0.00 0.00 0.00 2.83
334 339 1.075542 TGTTAAAGCTCGTGATGGCG 58.924 50.000 0.00 0.00 0.00 5.69
355 360 1.141657 AGACCGACATTGATGGATGGG 59.858 52.381 6.05 0.00 0.00 4.00
370 375 0.332972 ATGGGTGGCTTCCTTCCTTC 59.667 55.000 0.00 0.00 0.00 3.46
384 393 0.538057 TCCTTCACCAGCAAGCAAGG 60.538 55.000 2.63 2.63 35.81 3.61
392 401 3.752339 GCAAGCAAGGAAGGCGGG 61.752 66.667 0.00 0.00 36.08 6.13
393 402 3.752339 CAAGCAAGGAAGGCGGGC 61.752 66.667 0.00 0.00 36.08 6.13
397 406 2.818274 CAAGGAAGGCGGGCGTAC 60.818 66.667 0.00 0.00 0.00 3.67
419 442 3.314913 CCATGTGTACAATGTGTGTGTGT 59.685 43.478 0.00 0.00 41.89 3.72
429 452 2.221299 TGTGTGTGTAGGGGAGGGC 61.221 63.158 0.00 0.00 0.00 5.19
430 453 2.205749 TGTGTGTAGGGGAGGGCA 59.794 61.111 0.00 0.00 0.00 5.36
438 461 1.571773 TAGGGGAGGGCAAAAGGAGC 61.572 60.000 0.00 0.00 0.00 4.70
457 480 4.120755 GGAGAGGGGCCAAGGCTG 62.121 72.222 11.40 0.00 41.60 4.85
458 481 4.120755 GAGAGGGGCCAAGGCTGG 62.121 72.222 11.40 0.00 46.65 4.85
459 482 4.682714 AGAGGGGCCAAGGCTGGA 62.683 66.667 11.40 0.00 46.92 3.86
460 483 3.424105 GAGGGGCCAAGGCTGGAT 61.424 66.667 11.40 0.00 46.92 3.41
461 484 2.948924 AGGGGCCAAGGCTGGATT 60.949 61.111 11.40 0.00 46.92 3.01
462 485 1.622442 AGGGGCCAAGGCTGGATTA 60.622 57.895 11.40 0.00 46.92 1.75
463 486 1.152673 GGGGCCAAGGCTGGATTAG 60.153 63.158 11.40 0.00 46.92 1.73
464 487 1.152673 GGGCCAAGGCTGGATTAGG 60.153 63.158 11.40 0.00 46.92 2.69
505 528 2.252260 CGGAGCAACAAAGGCACG 59.748 61.111 0.00 0.00 0.00 5.34
509 532 3.605664 GCAACAAAGGCACGGGCT 61.606 61.111 10.74 1.05 41.24 5.19
510 533 2.265182 GCAACAAAGGCACGGGCTA 61.265 57.895 10.74 0.00 37.50 3.93
520 543 1.376609 GCACGGGCTAATCAAGTGGG 61.377 60.000 0.00 0.00 36.96 4.61
525 548 1.035139 GGCTAATCAAGTGGGCATGG 58.965 55.000 0.00 0.00 0.00 3.66
562 593 6.095021 GGTACAGACAAAAAGACCTCTGTTTT 59.905 38.462 4.59 0.00 40.36 2.43
609 655 2.524306 GTCCATCACCCATTGACCAAA 58.476 47.619 0.00 0.00 36.92 3.28
611 657 1.550072 CCATCACCCATTGACCAAACC 59.450 52.381 0.00 0.00 36.92 3.27
612 658 1.202114 CATCACCCATTGACCAAACCG 59.798 52.381 0.00 0.00 36.92 4.44
616 769 1.133606 ACCCATTGACCAAACCGAACT 60.134 47.619 0.00 0.00 0.00 3.01
629 782 3.060615 GAACTGGGGCAGCAGCAG 61.061 66.667 2.65 0.00 44.61 4.24
649 802 3.774528 CCGCAGGCAGCAGAGGTA 61.775 66.667 1.96 0.00 46.14 3.08
650 803 2.265739 CGCAGGCAGCAGAGGTAA 59.734 61.111 1.96 0.00 46.13 2.85
654 807 1.168714 CAGGCAGCAGAGGTAAAACC 58.831 55.000 0.00 0.00 38.99 3.27
655 808 0.321653 AGGCAGCAGAGGTAAAACCG 60.322 55.000 0.00 0.00 44.90 4.44
656 809 0.321298 GGCAGCAGAGGTAAAACCGA 60.321 55.000 0.00 0.00 44.90 4.69
657 810 1.079503 GCAGCAGAGGTAAAACCGAG 58.920 55.000 0.00 0.00 44.90 4.63
658 811 1.608283 GCAGCAGAGGTAAAACCGAGT 60.608 52.381 0.00 0.00 44.90 4.18
660 813 3.863400 GCAGCAGAGGTAAAACCGAGTAA 60.863 47.826 0.00 0.00 44.90 2.24
661 814 4.312443 CAGCAGAGGTAAAACCGAGTAAA 58.688 43.478 0.00 0.00 44.90 2.01
662 815 4.753107 CAGCAGAGGTAAAACCGAGTAAAA 59.247 41.667 0.00 0.00 44.90 1.52
663 816 4.995487 AGCAGAGGTAAAACCGAGTAAAAG 59.005 41.667 0.00 0.00 44.90 2.27
664 817 4.753610 GCAGAGGTAAAACCGAGTAAAAGT 59.246 41.667 0.00 0.00 44.90 2.66
667 820 5.237996 AGAGGTAAAACCGAGTAAAAGTTGC 59.762 40.000 0.00 0.00 44.90 4.17
668 821 5.128205 AGGTAAAACCGAGTAAAAGTTGCT 58.872 37.500 0.00 0.00 44.90 3.91
669 822 5.008316 AGGTAAAACCGAGTAAAAGTTGCTG 59.992 40.000 0.00 0.00 44.90 4.41
670 823 3.982576 AAACCGAGTAAAAGTTGCTGG 57.017 42.857 0.00 0.00 0.00 4.85
671 824 1.235724 ACCGAGTAAAAGTTGCTGGC 58.764 50.000 0.00 0.00 0.00 4.85
672 825 1.202770 ACCGAGTAAAAGTTGCTGGCT 60.203 47.619 0.00 0.00 0.00 4.75
687 840 0.037326 TGGCTTCCAGCGAGTGTTAG 60.037 55.000 0.00 0.00 43.62 2.34
688 841 1.362406 GGCTTCCAGCGAGTGTTAGC 61.362 60.000 0.00 0.00 43.62 3.09
689 842 0.670546 GCTTCCAGCGAGTGTTAGCA 60.671 55.000 0.00 0.00 33.16 3.49
690 843 1.071605 CTTCCAGCGAGTGTTAGCAC 58.928 55.000 0.72 0.72 45.57 4.40
691 844 0.320421 TTCCAGCGAGTGTTAGCACC 60.320 55.000 6.04 0.00 46.35 5.01
692 845 1.005037 CCAGCGAGTGTTAGCACCA 60.005 57.895 6.04 0.00 46.35 4.17
693 846 1.291877 CCAGCGAGTGTTAGCACCAC 61.292 60.000 6.04 0.63 46.35 4.16
695 848 0.319900 AGCGAGTGTTAGCACCACTG 60.320 55.000 6.04 0.00 46.35 3.66
696 849 0.600255 GCGAGTGTTAGCACCACTGT 60.600 55.000 6.04 0.00 46.35 3.55
697 850 1.419374 CGAGTGTTAGCACCACTGTC 58.581 55.000 6.04 0.00 46.35 3.51
699 852 2.408050 GAGTGTTAGCACCACTGTCTG 58.592 52.381 6.04 0.00 46.35 3.51
700 853 0.868406 GTGTTAGCACCACTGTCTGC 59.132 55.000 0.00 0.00 39.61 4.26
701 854 0.758734 TGTTAGCACCACTGTCTGCT 59.241 50.000 12.71 12.71 45.76 4.24
702 855 1.151668 GTTAGCACCACTGTCTGCTG 58.848 55.000 16.26 0.00 43.69 4.41
703 856 1.047801 TTAGCACCACTGTCTGCTGA 58.952 50.000 16.26 8.12 43.69 4.26
704 857 0.318441 TAGCACCACTGTCTGCTGAC 59.682 55.000 16.18 16.18 43.69 3.51
705 858 1.963338 GCACCACTGTCTGCTGACC 60.963 63.158 19.64 4.12 42.28 4.02
706 859 1.665916 CACCACTGTCTGCTGACCG 60.666 63.158 19.64 15.98 42.28 4.79
708 861 2.740055 CACTGTCTGCTGACCGCC 60.740 66.667 19.64 0.00 42.28 6.13
712 865 3.755628 GTCTGCTGACCGCCGGTA 61.756 66.667 9.73 0.00 35.25 4.02
713 866 3.449227 TCTGCTGACCGCCGGTAG 61.449 66.667 9.73 8.58 35.25 3.18
714 867 4.514577 CTGCTGACCGCCGGTAGG 62.515 72.222 9.73 15.20 35.25 3.18
716 869 3.142838 GCTGACCGCCGGTAGGTA 61.143 66.667 21.00 10.52 43.01 3.08
717 870 3.117372 CTGACCGCCGGTAGGTAG 58.883 66.667 21.00 14.90 43.01 3.18
718 871 1.751927 CTGACCGCCGGTAGGTAGT 60.752 63.158 21.00 2.01 43.01 2.73
719 872 0.464373 CTGACCGCCGGTAGGTAGTA 60.464 60.000 21.00 11.30 43.01 1.82
721 874 1.322442 GACCGCCGGTAGGTAGTAAT 58.678 55.000 21.00 0.64 43.01 1.89
723 876 0.600057 CCGCCGGTAGGTAGTAATCC 59.400 60.000 1.90 0.00 40.50 3.01
724 877 0.239347 CGCCGGTAGGTAGTAATCCG 59.761 60.000 1.90 0.00 40.50 4.18
727 880 0.239347 CGGTAGGTAGTAATCCGGCG 59.761 60.000 0.00 0.00 37.92 6.46
728 881 0.600057 GGTAGGTAGTAATCCGGCGG 59.400 60.000 22.51 22.51 0.00 6.13
729 882 0.600057 GTAGGTAGTAATCCGGCGGG 59.400 60.000 27.98 7.65 0.00 6.13
730 883 1.181098 TAGGTAGTAATCCGGCGGGC 61.181 60.000 27.98 13.87 0.00 6.13
731 884 2.030113 GTAGTAATCCGGCGGGCC 59.970 66.667 27.98 11.37 0.00 5.80
732 885 2.444329 TAGTAATCCGGCGGGCCA 60.444 61.111 27.98 7.29 35.37 5.36
733 886 2.799452 TAGTAATCCGGCGGGCCAC 61.799 63.158 27.98 19.85 35.37 5.01
734 887 4.171103 GTAATCCGGCGGGCCACT 62.171 66.667 27.98 8.66 35.37 4.00
735 888 3.857038 TAATCCGGCGGGCCACTC 61.857 66.667 27.98 0.00 35.37 3.51
741 894 4.241555 GGCGGGCCACTCGATCAT 62.242 66.667 4.39 0.00 35.81 2.45
742 895 2.969238 GCGGGCCACTCGATCATG 60.969 66.667 4.39 0.00 0.00 3.07
743 896 2.280389 CGGGCCACTCGATCATGG 60.280 66.667 4.39 6.21 39.16 3.66
744 897 2.111878 GGGCCACTCGATCATGGG 59.888 66.667 4.39 0.00 36.41 4.00
746 899 1.227674 GGCCACTCGATCATGGGAC 60.228 63.158 0.00 0.00 36.41 4.46
753 906 3.848142 GATCATGGGACGATCGCG 58.152 61.111 16.60 0.00 44.79 5.87
755 908 2.421877 GATCATGGGACGATCGCGGT 62.422 60.000 16.60 0.00 43.17 5.68
764 917 2.915463 GGACGATCGCGGTATAATTCAG 59.085 50.000 16.60 0.00 43.17 3.02
770 923 3.299050 CGGTATAATTCAGCCGCCA 57.701 52.632 2.35 0.00 37.69 5.69
771 924 1.588674 CGGTATAATTCAGCCGCCAA 58.411 50.000 2.35 0.00 37.69 4.52
773 926 2.294074 GGTATAATTCAGCCGCCAACA 58.706 47.619 0.00 0.00 0.00 3.33
777 930 0.031994 AATTCAGCCGCCAACACAAC 59.968 50.000 0.00 0.00 0.00 3.32
781 934 2.026014 GCCGCCAACACAACACAG 59.974 61.111 0.00 0.00 0.00 3.66
786 939 1.378531 GCCAACACAACACAGACAGA 58.621 50.000 0.00 0.00 0.00 3.41
794 947 2.233676 ACAACACAGACAGACAGACACA 59.766 45.455 0.00 0.00 0.00 3.72
796 949 3.827008 ACACAGACAGACAGACACAAT 57.173 42.857 0.00 0.00 0.00 2.71
799 952 2.623416 ACAGACAGACAGACACAATCGA 59.377 45.455 0.00 0.00 0.00 3.59
800 953 3.256879 ACAGACAGACAGACACAATCGAT 59.743 43.478 0.00 0.00 0.00 3.59
801 954 3.856521 CAGACAGACAGACACAATCGATC 59.143 47.826 0.00 0.00 0.00 3.69
805 958 3.485013 CAGACAGACACAATCGATCGATG 59.515 47.826 29.99 23.72 34.70 3.84
806 959 2.791560 GACAGACACAATCGATCGATGG 59.208 50.000 29.99 28.57 34.70 3.51
810 1145 3.571828 AGACACAATCGATCGATGGATCT 59.428 43.478 33.80 28.97 45.66 2.75
818 1153 2.161410 CGATCGATGGATCTCTGTCTCC 59.839 54.545 10.26 0.00 45.66 3.71
822 1157 1.691434 GATGGATCTCTGTCTCCCCAC 59.309 57.143 0.00 0.00 0.00 4.61
832 1206 1.423921 TGTCTCCCCACCTTTTCCTTC 59.576 52.381 0.00 0.00 0.00 3.46
842 1216 2.777692 ACCTTTTCCTTCCTCACAGTCA 59.222 45.455 0.00 0.00 0.00 3.41
855 1229 1.079266 CAGTCAGCCTCTGTGCTCC 60.079 63.158 0.00 0.00 40.32 4.70
856 1230 1.229145 AGTCAGCCTCTGTGCTCCT 60.229 57.895 0.00 0.00 40.32 3.69
857 1231 1.079266 GTCAGCCTCTGTGCTCCTG 60.079 63.158 0.00 0.00 40.32 3.86
858 1232 1.534959 TCAGCCTCTGTGCTCCTGT 60.535 57.895 0.00 0.00 40.32 4.00
871 1250 2.219325 CTCCTGTGTGCCTCCTCGAC 62.219 65.000 0.00 0.00 0.00 4.20
875 1254 1.371558 GTGTGCCTCCTCGACCTTT 59.628 57.895 0.00 0.00 0.00 3.11
878 1257 0.673956 GTGCCTCCTCGACCTTTTCC 60.674 60.000 0.00 0.00 0.00 3.13
879 1258 0.836400 TGCCTCCTCGACCTTTTCCT 60.836 55.000 0.00 0.00 0.00 3.36
880 1259 0.325272 GCCTCCTCGACCTTTTCCTT 59.675 55.000 0.00 0.00 0.00 3.36
881 1260 1.676314 GCCTCCTCGACCTTTTCCTTC 60.676 57.143 0.00 0.00 0.00 3.46
882 1261 1.066071 CCTCCTCGACCTTTTCCTTCC 60.066 57.143 0.00 0.00 0.00 3.46
883 1262 1.903183 CTCCTCGACCTTTTCCTTCCT 59.097 52.381 0.00 0.00 0.00 3.36
884 1263 1.900486 TCCTCGACCTTTTCCTTCCTC 59.100 52.381 0.00 0.00 0.00 3.71
885 1264 1.623811 CCTCGACCTTTTCCTTCCTCA 59.376 52.381 0.00 0.00 0.00 3.86
886 1265 2.613223 CCTCGACCTTTTCCTTCCTCAC 60.613 54.545 0.00 0.00 0.00 3.51
887 1266 2.037251 CTCGACCTTTTCCTTCCTCACA 59.963 50.000 0.00 0.00 0.00 3.58
888 1267 2.037251 TCGACCTTTTCCTTCCTCACAG 59.963 50.000 0.00 0.00 0.00 3.66
889 1268 2.037251 CGACCTTTTCCTTCCTCACAGA 59.963 50.000 0.00 0.00 0.00 3.41
890 1269 3.669536 GACCTTTTCCTTCCTCACAGAG 58.330 50.000 0.00 0.00 0.00 3.35
937 1356 5.391950 GGCATTATATTGCATTCCACCTACG 60.392 44.000 18.55 0.00 44.59 3.51
962 1381 1.011451 GTGCACTTGCTCTCGTCTCC 61.011 60.000 10.32 0.00 42.66 3.71
1180 1613 2.270527 GCAAGCTCCTCCAGGTCC 59.729 66.667 0.00 0.00 36.34 4.46
1186 1619 3.596799 TCCTCCAGGTCCGTCCCA 61.597 66.667 0.00 0.00 36.75 4.37
1187 1620 3.077556 CCTCCAGGTCCGTCCCAG 61.078 72.222 0.00 0.00 36.75 4.45
1189 1622 4.631740 TCCAGGTCCGTCCCAGCA 62.632 66.667 0.00 0.00 36.75 4.41
1191 1624 4.394712 CAGGTCCGTCCCAGCACC 62.395 72.222 0.00 0.00 36.75 5.01
1197 1630 2.186903 CGTCCCAGCACCGCTTAT 59.813 61.111 0.00 0.00 36.40 1.73
1198 1631 2.173669 CGTCCCAGCACCGCTTATG 61.174 63.158 0.00 0.00 36.40 1.90
1199 1632 2.124736 TCCCAGCACCGCTTATGC 60.125 61.111 0.00 0.00 43.74 3.14
1217 1942 3.666883 TGCGACGTTATTATGCCAAAG 57.333 42.857 0.00 0.00 0.00 2.77
1221 1946 5.176774 TGCGACGTTATTATGCCAAAGATAG 59.823 40.000 0.00 0.00 0.00 2.08
1227 1952 2.620251 TATGCCAAAGATAGCACGCT 57.380 45.000 0.00 0.00 42.84 5.07
1228 1953 1.755179 ATGCCAAAGATAGCACGCTT 58.245 45.000 0.00 0.00 42.84 4.68
1229 1954 1.086696 TGCCAAAGATAGCACGCTTC 58.913 50.000 0.00 0.00 33.08 3.86
1231 1956 1.740025 GCCAAAGATAGCACGCTTCTT 59.260 47.619 0.00 4.00 0.00 2.52
1232 1957 2.162408 GCCAAAGATAGCACGCTTCTTT 59.838 45.455 16.57 16.57 39.61 2.52
1234 1959 3.166657 CAAAGATAGCACGCTTCTTTGC 58.833 45.455 25.74 0.39 45.27 3.68
1244 1969 3.861113 CACGCTTCTTTGCATGCATAATT 59.139 39.130 23.37 0.00 0.00 1.40
1266 1991 3.679389 ACCAAGTTTCTCATAGTGGCAG 58.321 45.455 0.00 0.00 0.00 4.85
1301 2249 2.147150 GCCACAAGAGACAAGGAGAAC 58.853 52.381 0.00 0.00 0.00 3.01
1309 2257 3.008594 AGAGACAAGGAGAACGAGAGAGA 59.991 47.826 0.00 0.00 0.00 3.10
1311 2259 3.008594 AGACAAGGAGAACGAGAGAGAGA 59.991 47.826 0.00 0.00 0.00 3.10
1312 2260 3.343617 ACAAGGAGAACGAGAGAGAGAG 58.656 50.000 0.00 0.00 0.00 3.20
1313 2261 3.008594 ACAAGGAGAACGAGAGAGAGAGA 59.991 47.826 0.00 0.00 0.00 3.10
1316 2264 2.800544 GGAGAACGAGAGAGAGAGATCG 59.199 54.545 0.00 0.00 40.86 3.69
1331 2279 8.527810 AGAGAGAGATCGTCTTTGTTTCTTTAT 58.472 33.333 2.55 0.00 34.71 1.40
1332 2280 9.145865 GAGAGAGATCGTCTTTGTTTCTTTATT 57.854 33.333 2.55 0.00 34.71 1.40
1335 2283 9.930693 AGAGATCGTCTTTGTTTCTTTATTAGT 57.069 29.630 0.00 0.00 27.07 2.24
1378 2326 4.969604 GCGTGTGCTGTGCTGTGC 62.970 66.667 0.00 0.00 38.39 4.57
1409 2367 3.699038 ACAAGAAGATCCTTCCTCTCTCG 59.301 47.826 3.33 0.00 0.00 4.04
1412 2370 3.951680 AGAAGATCCTTCCTCTCTCGTTC 59.048 47.826 3.33 0.00 0.00 3.95
1413 2371 2.294074 AGATCCTTCCTCTCTCGTTCG 58.706 52.381 0.00 0.00 0.00 3.95
1445 2404 7.516198 AAAATAATAGAGACCATCACCATGC 57.484 36.000 0.00 0.00 0.00 4.06
1452 2411 1.746239 CCATCACCATGCGCTGTCA 60.746 57.895 9.73 0.00 0.00 3.58
1468 2431 5.331905 GCGCTGTCAAACTCTAATCTAATCG 60.332 44.000 0.00 0.00 0.00 3.34
1476 2439 7.817478 TCAAACTCTAATCTAATCGCAACAAGA 59.183 33.333 0.00 0.00 0.00 3.02
1477 2440 7.763172 AACTCTAATCTAATCGCAACAAGAG 57.237 36.000 0.00 0.00 35.27 2.85
1479 2442 6.127310 ACTCTAATCTAATCGCAACAAGAGGT 60.127 38.462 0.00 0.00 33.80 3.85
1500 2483 5.597806 GGTCTCATACCGATATTTGACACA 58.402 41.667 2.50 0.00 38.88 3.72
1501 2484 5.462398 GGTCTCATACCGATATTTGACACAC 59.538 44.000 2.50 0.00 38.88 3.82
1502 2485 6.040247 GTCTCATACCGATATTTGACACACA 58.960 40.000 0.00 0.00 0.00 3.72
1503 2486 6.019801 GTCTCATACCGATATTTGACACACAC 60.020 42.308 0.00 0.00 0.00 3.82
1504 2487 5.725362 TCATACCGATATTTGACACACACA 58.275 37.500 0.00 0.00 0.00 3.72
1505 2488 6.166982 TCATACCGATATTTGACACACACAA 58.833 36.000 0.00 0.00 0.00 3.33
1506 2489 6.651225 TCATACCGATATTTGACACACACAAA 59.349 34.615 0.00 0.00 40.62 2.83
1507 2490 5.759506 ACCGATATTTGACACACACAAAA 57.240 34.783 0.00 0.00 39.95 2.44
1551 2541 0.731417 GCTTAGCTGCAGTCCATGTG 59.269 55.000 16.64 1.04 0.00 3.21
1554 2544 0.036105 TAGCTGCAGTCCATGTGGTG 60.036 55.000 16.64 0.00 36.34 4.17
1599 2593 6.564709 TTCTTTTGCTATGCTATGCTATGG 57.435 37.500 0.00 0.00 0.00 2.74
1608 2602 1.787155 GCTATGCTATGGTTGACGACG 59.213 52.381 0.00 0.00 0.00 5.12
1609 2603 1.787155 CTATGCTATGGTTGACGACGC 59.213 52.381 0.00 0.00 0.00 5.19
1619 2613 2.210116 GTTGACGACGCCATCCATATT 58.790 47.619 0.00 0.00 0.00 1.28
1622 2616 3.386486 TGACGACGCCATCCATATTTAC 58.614 45.455 0.00 0.00 0.00 2.01
1625 2619 3.244422 ACGACGCCATCCATATTTACCAT 60.244 43.478 0.00 0.00 0.00 3.55
1626 2620 3.370978 CGACGCCATCCATATTTACCATC 59.629 47.826 0.00 0.00 0.00 3.51
1627 2621 4.323417 GACGCCATCCATATTTACCATCA 58.677 43.478 0.00 0.00 0.00 3.07
1628 2622 4.724399 ACGCCATCCATATTTACCATCAA 58.276 39.130 0.00 0.00 0.00 2.57
1629 2623 4.761739 ACGCCATCCATATTTACCATCAAG 59.238 41.667 0.00 0.00 0.00 3.02
1630 2624 4.379813 CGCCATCCATATTTACCATCAAGC 60.380 45.833 0.00 0.00 0.00 4.01
1632 2626 5.244626 GCCATCCATATTTACCATCAAGCTT 59.755 40.000 0.00 0.00 0.00 3.74
1633 2627 6.571150 GCCATCCATATTTACCATCAAGCTTC 60.571 42.308 0.00 0.00 0.00 3.86
1634 2628 6.071728 CCATCCATATTTACCATCAAGCTTCC 60.072 42.308 0.00 0.00 0.00 3.46
1637 2927 5.835280 CCATATTTACCATCAAGCTTCCCTT 59.165 40.000 0.00 0.00 0.00 3.95
1641 2931 3.078891 ACCATCAAGCTTCCCTTCTTC 57.921 47.619 0.00 0.00 0.00 2.87
1642 2932 2.376518 ACCATCAAGCTTCCCTTCTTCA 59.623 45.455 0.00 0.00 0.00 3.02
1689 2989 1.448013 GGGCAGCAACGTCCTACTC 60.448 63.158 0.00 0.00 0.00 2.59
1690 2990 1.448013 GGCAGCAACGTCCTACTCC 60.448 63.158 0.00 0.00 0.00 3.85
1691 2991 1.448013 GCAGCAACGTCCTACTCCC 60.448 63.158 0.00 0.00 0.00 4.30
1692 2992 1.889530 GCAGCAACGTCCTACTCCCT 61.890 60.000 0.00 0.00 0.00 4.20
1693 2993 0.173708 CAGCAACGTCCTACTCCCTC 59.826 60.000 0.00 0.00 0.00 4.30
1694 2994 0.971447 AGCAACGTCCTACTCCCTCC 60.971 60.000 0.00 0.00 0.00 4.30
1695 2995 1.807886 CAACGTCCTACTCCCTCCG 59.192 63.158 0.00 0.00 0.00 4.63
1696 2996 0.964358 CAACGTCCTACTCCCTCCGT 60.964 60.000 0.00 0.00 0.00 4.69
1697 2997 0.679321 AACGTCCTACTCCCTCCGTC 60.679 60.000 0.00 0.00 0.00 4.79
1698 2998 1.224039 CGTCCTACTCCCTCCGTCT 59.776 63.158 0.00 0.00 0.00 4.18
1699 2999 0.814812 CGTCCTACTCCCTCCGTCTC 60.815 65.000 0.00 0.00 0.00 3.36
1700 3000 0.255318 GTCCTACTCCCTCCGTCTCA 59.745 60.000 0.00 0.00 0.00 3.27
1701 3001 1.133730 GTCCTACTCCCTCCGTCTCAT 60.134 57.143 0.00 0.00 0.00 2.90
1702 3002 2.106166 GTCCTACTCCCTCCGTCTCATA 59.894 54.545 0.00 0.00 0.00 2.15
1703 3003 2.781757 TCCTACTCCCTCCGTCTCATAA 59.218 50.000 0.00 0.00 0.00 1.90
1704 3004 3.398292 TCCTACTCCCTCCGTCTCATAAT 59.602 47.826 0.00 0.00 0.00 1.28
1705 3005 3.508012 CCTACTCCCTCCGTCTCATAATG 59.492 52.174 0.00 0.00 0.00 1.90
1706 3006 3.033659 ACTCCCTCCGTCTCATAATGT 57.966 47.619 0.00 0.00 0.00 2.71
1707 3007 4.180377 ACTCCCTCCGTCTCATAATGTA 57.820 45.455 0.00 0.00 0.00 2.29
1708 3008 4.543689 ACTCCCTCCGTCTCATAATGTAA 58.456 43.478 0.00 0.00 0.00 2.41
1709 3009 5.148502 ACTCCCTCCGTCTCATAATGTAAT 58.851 41.667 0.00 0.00 0.00 1.89
1710 3010 6.312529 ACTCCCTCCGTCTCATAATGTAATA 58.687 40.000 0.00 0.00 0.00 0.98
1711 3011 6.954684 ACTCCCTCCGTCTCATAATGTAATAT 59.045 38.462 0.00 0.00 0.00 1.28
1712 3012 7.455008 ACTCCCTCCGTCTCATAATGTAATATT 59.545 37.037 0.00 0.00 0.00 1.28
1713 3013 7.611770 TCCCTCCGTCTCATAATGTAATATTG 58.388 38.462 0.00 0.00 0.00 1.90
1714 3014 6.818644 CCCTCCGTCTCATAATGTAATATTGG 59.181 42.308 0.00 0.00 0.00 3.16
1715 3015 7.386851 CCTCCGTCTCATAATGTAATATTGGT 58.613 38.462 0.00 0.00 0.00 3.67
1716 3016 7.331934 CCTCCGTCTCATAATGTAATATTGGTG 59.668 40.741 0.00 0.00 0.00 4.17
1717 3017 7.732025 TCCGTCTCATAATGTAATATTGGTGT 58.268 34.615 0.00 0.00 0.00 4.16
1718 3018 7.870954 TCCGTCTCATAATGTAATATTGGTGTC 59.129 37.037 0.00 0.00 0.00 3.67
1719 3019 7.655732 CCGTCTCATAATGTAATATTGGTGTCA 59.344 37.037 0.00 0.00 0.00 3.58
1720 3020 9.040939 CGTCTCATAATGTAATATTGGTGTCAA 57.959 33.333 0.00 0.00 37.28 3.18
1744 3044 7.931578 AAAAACGTCTTACATTATGGGATGA 57.068 32.000 0.00 0.00 0.00 2.92
1745 3045 7.553881 AAAACGTCTTACATTATGGGATGAG 57.446 36.000 0.00 0.00 0.00 2.90
1746 3046 5.871396 ACGTCTTACATTATGGGATGAGT 57.129 39.130 0.00 0.00 0.00 3.41
1747 3047 6.971726 ACGTCTTACATTATGGGATGAGTA 57.028 37.500 0.00 0.00 0.00 2.59
1748 3048 6.746120 ACGTCTTACATTATGGGATGAGTAC 58.254 40.000 0.00 0.00 0.00 2.73
1749 3049 6.550108 ACGTCTTACATTATGGGATGAGTACT 59.450 38.462 0.00 0.00 0.00 2.73
1757 3057 6.620877 TTATGGGATGAGTACTTTCACTGT 57.379 37.500 0.00 0.00 0.00 3.55
1801 3118 0.523072 CAACCCTACATGTGCAGTGC 59.477 55.000 9.11 8.58 0.00 4.40
1815 3133 4.097741 TGTGCAGTGCAGTCAATTTAAACT 59.902 37.500 20.42 0.00 40.08 2.66
1864 3182 5.665916 AAACTAGATTGATTGCCCAAAGG 57.334 39.130 0.00 0.00 0.00 3.11
1933 3422 1.072806 TGATGCTCCCATAGACATGCC 59.927 52.381 0.00 0.00 0.00 4.40
1938 3427 2.370189 GCTCCCATAGACATGCCTACTT 59.630 50.000 0.00 0.00 0.00 2.24
1948 3448 6.015991 AGACATGCCTACTTACTACTAGGT 57.984 41.667 0.00 0.00 33.22 3.08
1969 4064 9.420551 CTAGGTTCTTACTAAATCGACAAAGTT 57.579 33.333 0.00 0.00 0.00 2.66
2026 4128 3.331591 TCCCATGTGATAATCCATCCCAG 59.668 47.826 0.00 0.00 32.09 4.45
2062 4173 3.032339 CGTACGGCCTAGCTCTCC 58.968 66.667 7.57 0.00 0.00 3.71
2066 4177 2.677765 TACGGCCTAGCTCTCCCTCG 62.678 65.000 0.00 0.00 0.00 4.63
2067 4178 2.915137 GGCCTAGCTCTCCCTCGG 60.915 72.222 0.00 0.00 0.00 4.63
2068 4179 3.611674 GCCTAGCTCTCCCTCGGC 61.612 72.222 0.00 0.00 36.66 5.54
2069 4180 2.123683 CCTAGCTCTCCCTCGGCA 60.124 66.667 0.00 0.00 0.00 5.69
2070 4181 2.199652 CCTAGCTCTCCCTCGGCAG 61.200 68.421 0.00 0.00 0.00 4.85
2071 4182 1.454847 CTAGCTCTCCCTCGGCAGT 60.455 63.158 0.00 0.00 0.00 4.40
2073 4184 2.211468 TAGCTCTCCCTCGGCAGTCA 62.211 60.000 0.00 0.00 0.00 3.41
2074 4185 3.074999 GCTCTCCCTCGGCAGTCAG 62.075 68.421 0.00 0.00 0.00 3.51
2109 4228 1.379443 CACTGCACATGCCTCCCAT 60.379 57.895 0.49 0.00 41.18 4.00
2127 4246 5.879763 TCCCATCTCAACAGAAAATTCAGA 58.120 37.500 0.00 0.00 30.24 3.27
2153 4272 2.258286 GGCCGCACCAAACATGTC 59.742 61.111 0.00 0.00 38.86 3.06
2173 4292 3.063180 GTCGCAACCATCATCTTTCTCAG 59.937 47.826 0.00 0.00 0.00 3.35
2182 4301 7.222872 ACCATCATCTTTCTCAGCTTATTAGG 58.777 38.462 0.00 0.00 0.00 2.69
2204 4326 4.982916 GGGTCATATCGTTCATGTGTACTC 59.017 45.833 0.00 0.00 0.00 2.59
2208 4330 3.802948 ATCGTTCATGTGTACTCCCTC 57.197 47.619 0.00 0.00 0.00 4.30
2210 4332 3.162666 TCGTTCATGTGTACTCCCTCTT 58.837 45.455 0.00 0.00 0.00 2.85
2211 4333 3.576982 TCGTTCATGTGTACTCCCTCTTT 59.423 43.478 0.00 0.00 0.00 2.52
2213 4335 4.755123 CGTTCATGTGTACTCCCTCTTTTT 59.245 41.667 0.00 0.00 0.00 1.94
2214 4336 5.929992 CGTTCATGTGTACTCCCTCTTTTTA 59.070 40.000 0.00 0.00 0.00 1.52
2215 4337 6.128634 CGTTCATGTGTACTCCCTCTTTTTAC 60.129 42.308 0.00 0.00 0.00 2.01
2216 4338 5.801380 TCATGTGTACTCCCTCTTTTTACC 58.199 41.667 0.00 0.00 0.00 2.85
2217 4339 5.308497 TCATGTGTACTCCCTCTTTTTACCA 59.692 40.000 0.00 0.00 0.00 3.25
2218 4340 5.633655 TGTGTACTCCCTCTTTTTACCAA 57.366 39.130 0.00 0.00 0.00 3.67
2219 4341 6.003859 TGTGTACTCCCTCTTTTTACCAAA 57.996 37.500 0.00 0.00 0.00 3.28
2220 4342 6.424883 TGTGTACTCCCTCTTTTTACCAAAA 58.575 36.000 0.00 0.00 0.00 2.44
2221 4343 7.064229 TGTGTACTCCCTCTTTTTACCAAAAT 58.936 34.615 0.00 0.00 31.28 1.82
2222 4344 8.219178 TGTGTACTCCCTCTTTTTACCAAAATA 58.781 33.333 0.00 0.00 31.28 1.40
2223 4345 8.727910 GTGTACTCCCTCTTTTTACCAAAATAG 58.272 37.037 0.00 0.00 31.28 1.73
2224 4346 8.662255 TGTACTCCCTCTTTTTACCAAAATAGA 58.338 33.333 0.00 0.00 30.91 1.98
2225 4347 9.682465 GTACTCCCTCTTTTTACCAAAATAGAT 57.318 33.333 0.00 0.00 33.82 1.98
2226 4348 8.581253 ACTCCCTCTTTTTACCAAAATAGATG 57.419 34.615 0.00 0.00 33.82 2.90
2227 4349 8.390921 ACTCCCTCTTTTTACCAAAATAGATGA 58.609 33.333 0.00 0.00 33.82 2.92
2228 4350 8.575649 TCCCTCTTTTTACCAAAATAGATGAC 57.424 34.615 0.00 0.00 33.82 3.06
2229 4351 7.614192 TCCCTCTTTTTACCAAAATAGATGACC 59.386 37.037 0.00 0.00 33.82 4.02
2230 4352 7.147897 CCCTCTTTTTACCAAAATAGATGACCC 60.148 40.741 0.00 0.00 33.82 4.46
2231 4353 7.396055 CCTCTTTTTACCAAAATAGATGACCCA 59.604 37.037 0.00 0.00 33.82 4.51
2232 4354 8.713708 TCTTTTTACCAAAATAGATGACCCAA 57.286 30.769 0.00 0.00 30.60 4.12
2233 4355 8.581578 TCTTTTTACCAAAATAGATGACCCAAC 58.418 33.333 0.00 0.00 30.60 3.77
2241 4488 7.012421 CCAAAATAGATGACCCAACTTACTAGC 59.988 40.741 0.00 0.00 0.00 3.42
2243 4490 4.744795 AGATGACCCAACTTACTAGCTG 57.255 45.455 0.00 0.00 0.00 4.24
2253 4519 5.513267 CCAACTTACTAGCTGGGACTCTTTT 60.513 44.000 0.85 0.00 34.57 2.27
2255 4521 6.930068 ACTTACTAGCTGGGACTCTTTTTA 57.070 37.500 0.85 0.00 0.00 1.52
2273 4539 8.134905 TCTTTTTACTTCCGTCTGAAACTAAC 57.865 34.615 0.00 0.00 31.06 2.34
2433 4703 2.807045 GTGGAGTCGCTGCAGACG 60.807 66.667 20.43 20.16 45.26 4.18
2577 4853 4.309950 ACCAAGACGGCGGACCAC 62.310 66.667 13.24 0.00 39.03 4.16
2580 4856 3.319198 AAGACGGCGGACCACCAT 61.319 61.111 13.24 0.00 34.57 3.55
2595 4871 3.507675 CCATGACATGGCTGTGGAT 57.492 52.632 21.35 0.00 44.70 3.41
2657 4933 0.329261 TGGTCATTCTGAAGGCTGGG 59.671 55.000 0.00 0.00 0.00 4.45
2731 5014 9.672673 GTGATGGTTTGGTATATATAGAAGCAT 57.327 33.333 18.50 18.50 37.76 3.79
2783 5069 0.907230 GAGGAAGGTGAGGGCAGAGT 60.907 60.000 0.00 0.00 0.00 3.24
2784 5070 1.197430 AGGAAGGTGAGGGCAGAGTG 61.197 60.000 0.00 0.00 0.00 3.51
2785 5071 1.194781 GGAAGGTGAGGGCAGAGTGA 61.195 60.000 0.00 0.00 0.00 3.41
2787 5073 1.072331 GAAGGTGAGGGCAGAGTGAAA 59.928 52.381 0.00 0.00 0.00 2.69
2804 5094 2.569404 TGAAAGCCCTTCTTCTCTCCTC 59.431 50.000 0.00 0.00 34.86 3.71
2806 5096 2.159179 AGCCCTTCTTCTCTCCTCTC 57.841 55.000 0.00 0.00 0.00 3.20
2809 5099 2.091555 GCCCTTCTTCTCTCCTCTCCTA 60.092 54.545 0.00 0.00 0.00 2.94
2810 5100 3.437931 GCCCTTCTTCTCTCCTCTCCTAT 60.438 52.174 0.00 0.00 0.00 2.57
2812 5102 5.518367 GCCCTTCTTCTCTCCTCTCCTATAT 60.518 48.000 0.00 0.00 0.00 0.86
2813 5103 6.297360 GCCCTTCTTCTCTCCTCTCCTATATA 60.297 46.154 0.00 0.00 0.00 0.86
2814 5104 7.116736 CCCTTCTTCTCTCCTCTCCTATATAC 58.883 46.154 0.00 0.00 0.00 1.47
2815 5105 6.821665 CCTTCTTCTCTCCTCTCCTATATACG 59.178 46.154 0.00 0.00 0.00 3.06
2816 5106 5.736813 TCTTCTCTCCTCTCCTATATACGC 58.263 45.833 0.00 0.00 0.00 4.42
2817 5107 4.490899 TCTCTCCTCTCCTATATACGCC 57.509 50.000 0.00 0.00 0.00 5.68
2825 5115 2.826128 CTCCTATATACGCCTCCAGCAA 59.174 50.000 0.00 0.00 44.04 3.91
2850 5140 1.873486 GCGGATTTTTGGCTGTGCTTT 60.873 47.619 0.00 0.00 0.00 3.51
2860 5150 2.195922 GGCTGTGCTTTTGTTGACAAG 58.804 47.619 0.00 0.00 37.15 3.16
2864 5154 2.094286 TGTGCTTTTGTTGACAAGGGTG 60.094 45.455 0.00 0.00 37.15 4.61
2938 5239 1.202989 TGCTACCCCATTGCAAGAACA 60.203 47.619 4.94 0.00 36.03 3.18
2960 5261 4.989279 TTGCTGCCCTTTGAATTCTATC 57.011 40.909 7.05 0.00 0.00 2.08
3001 5417 1.933500 GCAACAGAAATGCAGGCTGTG 60.934 52.381 17.16 7.68 41.65 3.66
3013 5429 3.445450 TGCAGGCTGTGTTTTTAGTTCAA 59.555 39.130 17.16 0.00 0.00 2.69
3015 5431 4.440112 GCAGGCTGTGTTTTTAGTTCAAGT 60.440 41.667 17.16 0.00 0.00 3.16
3016 5432 5.650543 CAGGCTGTGTTTTTAGTTCAAGTT 58.349 37.500 6.28 0.00 0.00 2.66
3017 5433 6.679392 GCAGGCTGTGTTTTTAGTTCAAGTTA 60.679 38.462 17.16 0.00 0.00 2.24
3018 5434 7.425606 CAGGCTGTGTTTTTAGTTCAAGTTAT 58.574 34.615 6.28 0.00 0.00 1.89
3019 5435 7.920682 CAGGCTGTGTTTTTAGTTCAAGTTATT 59.079 33.333 6.28 0.00 0.00 1.40
3020 5436 7.920682 AGGCTGTGTTTTTAGTTCAAGTTATTG 59.079 33.333 0.00 0.00 37.80 1.90
3077 5514 2.681344 TGCATGCAGCTCAAGTTATCAG 59.319 45.455 18.46 0.00 45.94 2.90
3089 5526 6.500684 TCAAGTTATCAGAAGGCATGAAAC 57.499 37.500 0.00 0.00 0.00 2.78
3096 5533 1.808945 AGAAGGCATGAAACAGCTTCG 59.191 47.619 0.00 0.00 36.78 3.79
3097 5534 1.806542 GAAGGCATGAAACAGCTTCGA 59.193 47.619 0.00 0.00 36.78 3.71
3131 5578 1.078143 AATGCTGGCTCCCGAGAAC 60.078 57.895 0.00 0.00 0.00 3.01
3153 5600 4.144555 CGAACGATCTGAAGAAACAAAGC 58.855 43.478 0.00 0.00 0.00 3.51
3165 5612 5.859205 AGAAACAAAGCTGAGAACCAAAT 57.141 34.783 0.00 0.00 0.00 2.32
3269 5717 3.181462 TGAGCATTGCATACCACTCTAGG 60.181 47.826 11.91 0.00 0.00 3.02
3270 5718 1.876156 GCATTGCATACCACTCTAGGC 59.124 52.381 3.15 0.00 0.00 3.93
3285 5734 4.215827 ACTCTAGGCGACATAAGTTATCCG 59.784 45.833 0.00 8.91 0.00 4.18
3303 5752 1.371389 GGCGCGGTATCTTCCTACG 60.371 63.158 8.83 0.00 0.00 3.51
3352 5801 1.269723 TGTTACCACACAGCTCTCTCG 59.730 52.381 0.00 0.00 0.00 4.04
3401 5857 2.570302 TGGTAGGAAGCCTTACCAGAAC 59.430 50.000 2.81 0.00 34.67 3.01
3412 5868 0.606604 TACCAGAACCGGAGCACTTC 59.393 55.000 9.46 0.00 0.00 3.01
3417 5873 1.006102 AACCGGAGCACTTCGTGAG 60.006 57.895 9.46 0.00 35.23 3.51
3496 5952 5.183904 GTCTTTGCTGTCTGGACCAAATATT 59.816 40.000 0.00 0.00 0.00 1.28
3545 6001 7.556275 CCTGGTTCACATGTAAATATGGTAAGT 59.444 37.037 0.00 0.00 32.32 2.24
3546 6002 8.871629 TGGTTCACATGTAAATATGGTAAGTT 57.128 30.769 0.00 0.00 32.32 2.66
3547 6003 9.961264 TGGTTCACATGTAAATATGGTAAGTTA 57.039 29.630 0.00 0.00 32.32 2.24
3590 6046 5.124297 TGGCACAACATAGACTCAATTCATG 59.876 40.000 0.00 0.00 31.92 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.680352 ACACGACGGCCTCTCCAT 60.680 61.111 0.00 0.00 34.01 3.41
1 2 3.680786 CACACGACGGCCTCTCCA 61.681 66.667 0.00 0.00 34.01 3.86
155 160 1.758319 CGACGAACAAACTGCCGTGT 61.758 55.000 0.00 0.00 31.88 4.49
156 161 1.083657 CGACGAACAAACTGCCGTG 60.084 57.895 0.00 0.00 31.88 4.94
171 176 1.737008 GAAAGGACAGGACGGCGAC 60.737 63.158 16.62 7.58 0.00 5.19
172 177 1.469335 AAGAAAGGACAGGACGGCGA 61.469 55.000 16.62 0.00 0.00 5.54
173 178 0.602905 AAAGAAAGGACAGGACGGCG 60.603 55.000 4.80 4.80 0.00 6.46
174 179 1.157585 GAAAGAAAGGACAGGACGGC 58.842 55.000 0.00 0.00 0.00 5.68
181 186 2.294233 GTGCATGCAGAAAGAAAGGACA 59.706 45.455 23.41 0.00 0.00 4.02
182 187 2.555757 AGTGCATGCAGAAAGAAAGGAC 59.444 45.455 23.41 4.37 0.00 3.85
184 189 2.295349 ACAGTGCATGCAGAAAGAAAGG 59.705 45.455 23.41 5.35 0.00 3.11
189 194 2.292569 AGACAACAGTGCATGCAGAAAG 59.707 45.455 23.41 13.48 0.00 2.62
190 195 2.291465 GAGACAACAGTGCATGCAGAAA 59.709 45.455 23.41 0.00 0.00 2.52
195 200 0.110509 CACGAGACAACAGTGCATGC 60.111 55.000 11.82 11.82 0.00 4.06
201 206 1.661821 GCTCGCACGAGACAACAGT 60.662 57.895 23.33 0.00 44.53 3.55
202 207 1.372251 AGCTCGCACGAGACAACAG 60.372 57.895 23.33 0.00 44.53 3.16
203 208 1.661509 CAGCTCGCACGAGACAACA 60.662 57.895 23.33 0.00 44.53 3.33
219 224 2.831742 ATTGCCATGGCTCCGCAG 60.832 61.111 35.53 0.00 42.51 5.18
220 225 3.142162 CATTGCCATGGCTCCGCA 61.142 61.111 35.53 14.23 42.51 5.69
221 226 2.345880 CTTCATTGCCATGGCTCCGC 62.346 60.000 35.53 11.15 42.51 5.54
222 227 1.731700 CTTCATTGCCATGGCTCCG 59.268 57.895 35.53 22.97 42.51 4.63
223 228 1.041447 AGCTTCATTGCCATGGCTCC 61.041 55.000 35.53 15.92 42.51 4.70
224 229 0.384669 GAGCTTCATTGCCATGGCTC 59.615 55.000 35.53 19.21 42.51 4.70
225 230 1.381928 CGAGCTTCATTGCCATGGCT 61.382 55.000 35.53 15.87 42.51 4.75
226 231 1.065273 CGAGCTTCATTGCCATGGC 59.935 57.895 30.54 30.54 42.35 4.40
227 232 0.661552 CTCGAGCTTCATTGCCATGG 59.338 55.000 7.63 7.63 0.00 3.66
228 233 1.376543 ACTCGAGCTTCATTGCCATG 58.623 50.000 13.61 0.00 0.00 3.66
229 234 2.119801 AACTCGAGCTTCATTGCCAT 57.880 45.000 13.61 0.00 0.00 4.40
230 235 1.896220 AAACTCGAGCTTCATTGCCA 58.104 45.000 13.61 0.00 0.00 4.92
231 236 2.997485 AAAACTCGAGCTTCATTGCC 57.003 45.000 13.61 0.00 0.00 4.52
232 237 3.888934 TGAAAAACTCGAGCTTCATTGC 58.111 40.909 13.61 0.00 0.00 3.56
233 238 3.910767 GCTGAAAAACTCGAGCTTCATTG 59.089 43.478 19.59 13.03 0.00 2.82
234 239 3.364366 CGCTGAAAAACTCGAGCTTCATT 60.364 43.478 19.59 5.65 0.00 2.57
235 240 2.158449 CGCTGAAAAACTCGAGCTTCAT 59.842 45.455 19.59 6.20 0.00 2.57
236 241 1.526887 CGCTGAAAAACTCGAGCTTCA 59.473 47.619 13.61 16.92 0.00 3.02
237 242 1.723067 GCGCTGAAAAACTCGAGCTTC 60.723 52.381 13.61 13.25 0.00 3.86
238 243 0.235926 GCGCTGAAAAACTCGAGCTT 59.764 50.000 13.61 3.15 0.00 3.74
239 244 1.569479 GGCGCTGAAAAACTCGAGCT 61.569 55.000 13.61 0.00 0.00 4.09
240 245 1.154395 GGCGCTGAAAAACTCGAGC 60.154 57.895 13.61 0.00 0.00 5.03
241 246 1.130613 CGGCGCTGAAAAACTCGAG 59.869 57.895 11.90 11.84 0.00 4.04
242 247 0.876777 TTCGGCGCTGAAAAACTCGA 60.877 50.000 28.78 12.31 0.00 4.04
243 248 0.721483 GTTCGGCGCTGAAAAACTCG 60.721 55.000 32.05 11.90 0.00 4.18
244 249 0.306533 TGTTCGGCGCTGAAAAACTC 59.693 50.000 32.05 19.65 0.00 3.01
245 250 0.736053 TTGTTCGGCGCTGAAAAACT 59.264 45.000 32.05 0.00 0.00 2.66
246 251 1.254313 GTTTGTTCGGCGCTGAAAAAC 59.746 47.619 29.88 30.50 0.00 2.43
247 252 1.133407 AGTTTGTTCGGCGCTGAAAAA 59.867 42.857 32.05 29.43 0.00 1.94
248 253 0.736053 AGTTTGTTCGGCGCTGAAAA 59.264 45.000 32.05 25.32 0.00 2.29
249 254 0.028770 CAGTTTGTTCGGCGCTGAAA 59.971 50.000 32.05 19.23 0.00 2.69
250 255 1.646540 CAGTTTGTTCGGCGCTGAA 59.353 52.632 27.37 27.37 0.00 3.02
251 256 2.250939 CCAGTTTGTTCGGCGCTGA 61.251 57.895 16.69 16.69 0.00 4.26
252 257 2.252260 CCAGTTTGTTCGGCGCTG 59.748 61.111 10.86 10.86 0.00 5.18
253 258 2.203153 ACCAGTTTGTTCGGCGCT 60.203 55.556 7.64 0.00 0.00 5.92
254 259 2.051345 CACCAGTTTGTTCGGCGC 60.051 61.111 0.00 0.00 0.00 6.53
255 260 1.157870 AGACACCAGTTTGTTCGGCG 61.158 55.000 0.00 0.00 0.00 6.46
256 261 0.307760 CAGACACCAGTTTGTTCGGC 59.692 55.000 0.00 0.00 0.00 5.54
257 262 1.663695 ACAGACACCAGTTTGTTCGG 58.336 50.000 0.00 0.00 39.81 4.30
261 266 2.396590 ACGAACAGACACCAGTTTGT 57.603 45.000 0.00 0.00 44.12 2.83
262 267 2.675844 TGAACGAACAGACACCAGTTTG 59.324 45.455 0.00 0.00 36.04 2.93
263 268 2.980568 TGAACGAACAGACACCAGTTT 58.019 42.857 0.00 0.00 0.00 2.66
264 269 2.684001 TGAACGAACAGACACCAGTT 57.316 45.000 0.00 0.00 0.00 3.16
265 270 2.910688 ATGAACGAACAGACACCAGT 57.089 45.000 0.00 0.00 0.00 4.00
266 271 4.035091 TCAAAATGAACGAACAGACACCAG 59.965 41.667 0.00 0.00 0.00 4.00
267 272 3.942115 TCAAAATGAACGAACAGACACCA 59.058 39.130 0.00 0.00 0.00 4.17
268 273 4.279659 GTCAAAATGAACGAACAGACACC 58.720 43.478 0.00 0.00 0.00 4.16
269 274 3.960002 CGTCAAAATGAACGAACAGACAC 59.040 43.478 0.00 0.00 0.00 3.67
270 275 3.866327 TCGTCAAAATGAACGAACAGACA 59.134 39.130 0.00 0.00 31.04 3.41
271 276 4.201576 GTCGTCAAAATGAACGAACAGAC 58.798 43.478 0.00 0.00 33.98 3.51
272 277 3.060807 CGTCGTCAAAATGAACGAACAGA 60.061 43.478 0.00 0.00 33.98 3.41
273 278 3.060807 TCGTCGTCAAAATGAACGAACAG 60.061 43.478 5.16 0.00 33.98 3.16
274 279 2.858941 TCGTCGTCAAAATGAACGAACA 59.141 40.909 5.16 0.00 33.98 3.18
275 280 3.492725 TCGTCGTCAAAATGAACGAAC 57.507 42.857 5.16 0.00 33.98 3.95
276 281 3.736759 TCATCGTCGTCAAAATGAACGAA 59.263 39.130 10.25 0.00 33.98 3.85
277 282 3.310246 TCATCGTCGTCAAAATGAACGA 58.690 40.909 9.02 9.02 32.51 3.85
278 283 3.698420 TCATCGTCGTCAAAATGAACG 57.302 42.857 0.00 0.00 0.00 3.95
279 284 5.203358 TCATCATCGTCGTCAAAATGAAC 57.797 39.130 0.00 0.00 32.31 3.18
280 285 5.580297 TCATCATCATCGTCGTCAAAATGAA 59.420 36.000 0.00 0.00 32.31 2.57
281 286 5.108517 TCATCATCATCGTCGTCAAAATGA 58.891 37.500 0.00 0.00 33.04 2.57
282 287 5.393902 TCATCATCATCGTCGTCAAAATG 57.606 39.130 0.00 0.00 0.00 2.32
283 288 5.049886 CCATCATCATCATCGTCGTCAAAAT 60.050 40.000 0.00 0.00 0.00 1.82
284 289 4.270808 CCATCATCATCATCGTCGTCAAAA 59.729 41.667 0.00 0.00 0.00 2.44
285 290 3.803778 CCATCATCATCATCGTCGTCAAA 59.196 43.478 0.00 0.00 0.00 2.69
286 291 3.181476 ACCATCATCATCATCGTCGTCAA 60.181 43.478 0.00 0.00 0.00 3.18
287 292 2.362077 ACCATCATCATCATCGTCGTCA 59.638 45.455 0.00 0.00 0.00 4.35
288 293 3.018598 ACCATCATCATCATCGTCGTC 57.981 47.619 0.00 0.00 0.00 4.20
289 294 4.584327 TTACCATCATCATCATCGTCGT 57.416 40.909 0.00 0.00 0.00 4.34
290 295 7.761651 ATAATTACCATCATCATCATCGTCG 57.238 36.000 0.00 0.00 0.00 5.12
291 296 8.939929 ACAATAATTACCATCATCATCATCGTC 58.060 33.333 0.00 0.00 0.00 4.20
292 297 8.853077 ACAATAATTACCATCATCATCATCGT 57.147 30.769 0.00 0.00 0.00 3.73
300 305 9.599322 CGAGCTTTAACAATAATTACCATCATC 57.401 33.333 0.00 0.00 0.00 2.92
301 306 9.120538 ACGAGCTTTAACAATAATTACCATCAT 57.879 29.630 0.00 0.00 0.00 2.45
302 307 8.394877 CACGAGCTTTAACAATAATTACCATCA 58.605 33.333 0.00 0.00 0.00 3.07
313 318 2.095853 CGCCATCACGAGCTTTAACAAT 59.904 45.455 0.00 0.00 34.06 2.71
316 321 1.355971 TCGCCATCACGAGCTTTAAC 58.644 50.000 0.00 0.00 37.09 2.01
317 322 3.824621 TCGCCATCACGAGCTTTAA 57.175 47.368 0.00 0.00 37.09 1.52
334 339 2.487934 CCATCCATCAATGTCGGTCTC 58.512 52.381 0.00 0.00 0.00 3.36
345 350 0.920763 AGGAAGCCACCCATCCATCA 60.921 55.000 0.00 0.00 35.62 3.07
355 360 0.110486 TGGTGAAGGAAGGAAGCCAC 59.890 55.000 0.00 0.00 0.00 5.01
370 375 1.962144 CCTTCCTTGCTTGCTGGTG 59.038 57.895 0.00 0.00 0.00 4.17
384 393 2.895372 CATGGTACGCCCGCCTTC 60.895 66.667 0.00 0.00 35.15 3.46
395 404 4.513318 CACACACACATTGTACACATGGTA 59.487 41.667 16.95 0.00 35.67 3.25
397 406 3.314913 ACACACACACATTGTACACATGG 59.685 43.478 16.95 11.00 35.67 3.66
407 416 1.351017 CCTCCCCTACACACACACATT 59.649 52.381 0.00 0.00 0.00 2.71
419 442 1.571773 GCTCCTTTTGCCCTCCCCTA 61.572 60.000 0.00 0.00 0.00 3.53
429 452 1.078143 CCCTCTCCGGCTCCTTTTG 60.078 63.158 0.00 0.00 0.00 2.44
430 453 2.301738 CCCCTCTCCGGCTCCTTTT 61.302 63.158 0.00 0.00 0.00 2.27
452 475 1.142465 CACTGATGCCTAATCCAGCCT 59.858 52.381 0.00 0.00 34.00 4.58
455 478 2.092753 ACACCACTGATGCCTAATCCAG 60.093 50.000 0.00 0.00 34.00 3.86
456 479 1.915489 ACACCACTGATGCCTAATCCA 59.085 47.619 0.00 0.00 34.00 3.41
457 480 2.171448 AGACACCACTGATGCCTAATCC 59.829 50.000 0.00 0.00 34.00 3.01
458 481 3.462021 GAGACACCACTGATGCCTAATC 58.538 50.000 0.00 0.00 35.67 1.75
459 482 2.171448 GGAGACACCACTGATGCCTAAT 59.829 50.000 0.00 0.00 38.79 1.73
460 483 1.555075 GGAGACACCACTGATGCCTAA 59.445 52.381 0.00 0.00 38.79 2.69
461 484 1.195115 GGAGACACCACTGATGCCTA 58.805 55.000 0.00 0.00 38.79 3.93
462 485 1.557269 GGGAGACACCACTGATGCCT 61.557 60.000 0.00 0.00 41.20 4.75
463 486 1.078143 GGGAGACACCACTGATGCC 60.078 63.158 0.00 0.00 41.20 4.40
464 487 0.036732 TTGGGAGACACCACTGATGC 59.963 55.000 0.00 0.00 41.03 3.91
468 491 3.329300 CCTTTGGGAGACACCACTG 57.671 57.895 0.00 0.00 41.03 3.66
495 518 0.037590 TGATTAGCCCGTGCCTTTGT 59.962 50.000 0.00 0.00 38.69 2.83
496 519 1.133025 CTTGATTAGCCCGTGCCTTTG 59.867 52.381 0.00 0.00 38.69 2.77
499 522 0.392998 CACTTGATTAGCCCGTGCCT 60.393 55.000 0.00 0.00 38.69 4.75
501 524 1.376609 CCCACTTGATTAGCCCGTGC 61.377 60.000 0.00 0.00 37.95 5.34
502 525 1.376609 GCCCACTTGATTAGCCCGTG 61.377 60.000 0.00 0.00 0.00 4.94
503 526 1.077716 GCCCACTTGATTAGCCCGT 60.078 57.895 0.00 0.00 0.00 5.28
504 527 0.466189 ATGCCCACTTGATTAGCCCG 60.466 55.000 0.00 0.00 0.00 6.13
505 528 1.035139 CATGCCCACTTGATTAGCCC 58.965 55.000 0.00 0.00 0.00 5.19
509 532 3.205815 GGCCATGCCCACTTGATTA 57.794 52.632 0.00 0.00 44.06 1.75
510 533 4.039042 GGCCATGCCCACTTGATT 57.961 55.556 0.00 0.00 44.06 2.57
520 543 3.908081 CCATTCGCAGGGCCATGC 61.908 66.667 31.97 31.97 42.95 4.06
535 558 3.714798 AGAGGTCTTTTTGTCTGTACCCA 59.285 43.478 0.00 0.00 0.00 4.51
562 593 0.865111 CGGACAAGATGCGTCAACAA 59.135 50.000 8.99 0.00 37.38 2.83
609 655 4.335647 CTGCTGCCCCAGTTCGGT 62.336 66.667 0.00 0.00 33.43 4.69
612 658 3.060615 CTGCTGCTGCCCCAGTTC 61.061 66.667 13.47 0.00 38.71 3.01
633 786 0.955428 TTTTACCTCTGCTGCCTGCG 60.955 55.000 0.00 0.00 46.63 5.18
634 787 0.523519 GTTTTACCTCTGCTGCCTGC 59.476 55.000 0.00 0.00 43.25 4.85
635 788 1.168714 GGTTTTACCTCTGCTGCCTG 58.831 55.000 0.00 0.00 34.73 4.85
636 789 0.321653 CGGTTTTACCTCTGCTGCCT 60.322 55.000 0.00 0.00 35.66 4.75
637 790 0.321298 TCGGTTTTACCTCTGCTGCC 60.321 55.000 0.00 0.00 35.66 4.85
638 791 1.079503 CTCGGTTTTACCTCTGCTGC 58.920 55.000 0.00 0.00 35.66 5.25
639 792 2.457366 ACTCGGTTTTACCTCTGCTG 57.543 50.000 0.00 0.00 35.66 4.41
649 802 3.490249 GCCAGCAACTTTTACTCGGTTTT 60.490 43.478 0.00 0.00 0.00 2.43
650 803 2.034179 GCCAGCAACTTTTACTCGGTTT 59.966 45.455 0.00 0.00 0.00 3.27
654 807 2.095718 GGAAGCCAGCAACTTTTACTCG 60.096 50.000 0.00 0.00 0.00 4.18
655 808 2.884639 TGGAAGCCAGCAACTTTTACTC 59.115 45.455 0.00 0.00 0.00 2.59
656 809 2.887152 CTGGAAGCCAGCAACTTTTACT 59.113 45.455 0.00 0.00 45.13 2.24
657 810 3.288809 CTGGAAGCCAGCAACTTTTAC 57.711 47.619 0.00 0.00 45.13 2.01
671 824 1.071605 GTGCTAACACTCGCTGGAAG 58.928 55.000 0.00 0.00 43.85 3.46
672 825 0.320421 GGTGCTAACACTCGCTGGAA 60.320 55.000 0.00 0.00 46.57 3.53
677 830 0.600255 ACAGTGGTGCTAACACTCGC 60.600 55.000 4.16 0.00 45.50 5.03
679 832 2.408050 CAGACAGTGGTGCTAACACTC 58.592 52.381 4.16 0.00 45.50 3.51
689 842 2.737180 CGGTCAGCAGACAGTGGT 59.263 61.111 11.67 0.00 46.80 4.16
690 843 2.740055 GCGGTCAGCAGACAGTGG 60.740 66.667 11.67 0.00 46.80 4.00
700 853 0.464373 TACTACCTACCGGCGGTCAG 60.464 60.000 37.83 28.81 37.09 3.51
701 854 0.034574 TTACTACCTACCGGCGGTCA 60.035 55.000 37.83 20.28 37.09 4.02
702 855 1.268079 GATTACTACCTACCGGCGGTC 59.732 57.143 37.83 13.46 37.09 4.79
703 856 1.322442 GATTACTACCTACCGGCGGT 58.678 55.000 35.91 35.91 40.16 5.68
704 857 0.600057 GGATTACTACCTACCGGCGG 59.400 60.000 27.06 27.06 0.00 6.13
705 858 0.239347 CGGATTACTACCTACCGGCG 59.761 60.000 0.00 0.00 39.92 6.46
708 861 0.239347 CGCCGGATTACTACCTACCG 59.761 60.000 5.05 0.00 42.67 4.02
710 863 0.600057 CCCGCCGGATTACTACCTAC 59.400 60.000 5.05 0.00 0.00 3.18
711 864 1.181098 GCCCGCCGGATTACTACCTA 61.181 60.000 5.05 0.00 0.00 3.08
712 865 2.505167 GCCCGCCGGATTACTACCT 61.505 63.158 5.05 0.00 0.00 3.08
713 866 2.030113 GCCCGCCGGATTACTACC 59.970 66.667 5.05 0.00 0.00 3.18
714 867 2.030113 GGCCCGCCGGATTACTAC 59.970 66.667 5.05 0.00 0.00 2.73
715 868 2.444329 TGGCCCGCCGGATTACTA 60.444 61.111 5.05 0.00 39.42 1.82
716 869 4.171103 GTGGCCCGCCGGATTACT 62.171 66.667 5.05 0.00 39.42 2.24
717 870 4.171103 AGTGGCCCGCCGGATTAC 62.171 66.667 5.05 0.00 39.42 1.89
718 871 3.857038 GAGTGGCCCGCCGGATTA 61.857 66.667 5.05 0.00 39.42 1.75
724 877 4.241555 ATGATCGAGTGGCCCGCC 62.242 66.667 0.00 0.00 0.00 6.13
725 878 2.969238 CATGATCGAGTGGCCCGC 60.969 66.667 0.00 0.00 0.00 6.13
726 879 2.280389 CCATGATCGAGTGGCCCG 60.280 66.667 0.00 0.00 0.00 6.13
727 880 2.111878 CCCATGATCGAGTGGCCC 59.888 66.667 0.00 0.00 34.08 5.80
728 881 1.227674 GTCCCATGATCGAGTGGCC 60.228 63.158 0.00 0.00 34.08 5.36
729 882 1.592669 CGTCCCATGATCGAGTGGC 60.593 63.158 8.37 0.00 34.08 5.01
730 883 0.676184 ATCGTCCCATGATCGAGTGG 59.324 55.000 0.00 7.18 37.04 4.00
731 884 2.057503 GATCGTCCCATGATCGAGTG 57.942 55.000 0.00 0.00 37.04 3.51
736 889 1.734477 CCGCGATCGTCCCATGATC 60.734 63.158 17.81 0.00 37.30 2.92
737 890 1.176619 TACCGCGATCGTCCCATGAT 61.177 55.000 17.81 0.00 0.00 2.45
738 891 1.176619 ATACCGCGATCGTCCCATGA 61.177 55.000 17.81 0.00 0.00 3.07
739 892 0.524414 TATACCGCGATCGTCCCATG 59.476 55.000 17.81 1.88 0.00 3.66
740 893 1.250328 TTATACCGCGATCGTCCCAT 58.750 50.000 17.81 8.13 0.00 4.00
741 894 1.250328 ATTATACCGCGATCGTCCCA 58.750 50.000 17.81 0.38 0.00 4.37
742 895 2.257034 GAATTATACCGCGATCGTCCC 58.743 52.381 17.81 0.00 0.00 4.46
743 896 2.915463 CTGAATTATACCGCGATCGTCC 59.085 50.000 17.81 0.00 0.00 4.79
744 897 2.341760 GCTGAATTATACCGCGATCGTC 59.658 50.000 17.81 8.19 0.00 4.20
746 899 1.654105 GGCTGAATTATACCGCGATCG 59.346 52.381 11.69 11.69 0.00 3.69
753 906 2.032924 GTGTTGGCGGCTGAATTATACC 59.967 50.000 11.43 0.00 0.00 2.73
755 908 2.992593 TGTGTTGGCGGCTGAATTATA 58.007 42.857 11.43 0.00 0.00 0.98
764 917 2.026014 CTGTGTTGTGTTGGCGGC 59.974 61.111 0.00 0.00 0.00 6.53
768 921 2.352651 CTGTCTGTCTGTGTTGTGTTGG 59.647 50.000 0.00 0.00 0.00 3.77
770 923 3.262420 GTCTGTCTGTCTGTGTTGTGTT 58.738 45.455 0.00 0.00 0.00 3.32
771 924 2.233676 TGTCTGTCTGTCTGTGTTGTGT 59.766 45.455 0.00 0.00 0.00 3.72
773 926 2.233676 TGTGTCTGTCTGTCTGTGTTGT 59.766 45.455 0.00 0.00 0.00 3.32
777 930 2.728318 CGATTGTGTCTGTCTGTCTGTG 59.272 50.000 0.00 0.00 0.00 3.66
781 934 2.848887 CGATCGATTGTGTCTGTCTGTC 59.151 50.000 10.26 0.00 0.00 3.51
786 939 2.427095 TCCATCGATCGATTGTGTCTGT 59.573 45.455 27.45 1.70 31.62 3.41
799 952 2.524306 GGGAGACAGAGATCCATCGAT 58.476 52.381 0.00 0.00 37.33 3.59
800 953 1.479573 GGGGAGACAGAGATCCATCGA 60.480 57.143 0.00 0.00 37.33 3.59
801 954 0.965439 GGGGAGACAGAGATCCATCG 59.035 60.000 0.00 0.00 37.33 3.84
805 958 0.031616 AGGTGGGGAGACAGAGATCC 60.032 60.000 0.00 0.00 34.64 3.36
806 959 1.872773 AAGGTGGGGAGACAGAGATC 58.127 55.000 0.00 0.00 0.00 2.75
810 1145 1.064825 GGAAAAGGTGGGGAGACAGA 58.935 55.000 0.00 0.00 0.00 3.41
818 1153 1.144913 TGTGAGGAAGGAAAAGGTGGG 59.855 52.381 0.00 0.00 0.00 4.61
822 1157 3.406764 CTGACTGTGAGGAAGGAAAAGG 58.593 50.000 0.00 0.00 0.00 3.11
832 1206 2.360138 ACAGAGGCTGACTGTGAGG 58.640 57.895 15.40 0.00 45.19 3.86
855 1229 1.821061 AAGGTCGAGGAGGCACACAG 61.821 60.000 0.00 0.00 0.00 3.66
856 1230 1.407656 AAAGGTCGAGGAGGCACACA 61.408 55.000 0.00 0.00 0.00 3.72
857 1231 0.250338 AAAAGGTCGAGGAGGCACAC 60.250 55.000 0.00 0.00 0.00 3.82
858 1232 0.034896 GAAAAGGTCGAGGAGGCACA 59.965 55.000 0.00 0.00 0.00 4.57
882 1261 2.243810 GGCTATAGGGTCCTCTGTGAG 58.756 57.143 1.04 0.00 0.00 3.51
883 1262 1.573857 TGGCTATAGGGTCCTCTGTGA 59.426 52.381 1.04 0.00 0.00 3.58
884 1263 2.088104 TGGCTATAGGGTCCTCTGTG 57.912 55.000 1.04 0.00 0.00 3.66
885 1264 2.683768 CTTGGCTATAGGGTCCTCTGT 58.316 52.381 1.04 0.00 0.00 3.41
886 1265 1.974236 CCTTGGCTATAGGGTCCTCTG 59.026 57.143 1.04 0.00 0.00 3.35
887 1266 1.763192 GCCTTGGCTATAGGGTCCTCT 60.763 57.143 4.11 0.00 33.19 3.69
888 1267 0.687920 GCCTTGGCTATAGGGTCCTC 59.312 60.000 4.11 0.00 33.19 3.71
889 1268 1.122019 CGCCTTGGCTATAGGGTCCT 61.122 60.000 10.12 0.00 33.19 3.85
890 1269 1.119574 TCGCCTTGGCTATAGGGTCC 61.120 60.000 10.12 0.00 33.19 4.46
891 1270 0.318762 CTCGCCTTGGCTATAGGGTC 59.681 60.000 10.12 0.00 33.19 4.46
909 1328 2.493278 GGAATGCAATATAATGCCGCCT 59.507 45.455 10.25 0.00 45.83 5.52
910 1329 2.230992 TGGAATGCAATATAATGCCGCC 59.769 45.455 10.25 8.99 45.83 6.13
911 1330 3.244976 GTGGAATGCAATATAATGCCGC 58.755 45.455 10.25 0.00 45.83 6.53
912 1331 3.507233 AGGTGGAATGCAATATAATGCCG 59.493 43.478 10.25 0.00 45.83 5.69
913 1332 5.391950 CGTAGGTGGAATGCAATATAATGCC 60.392 44.000 10.25 0.00 45.83 4.40
918 1337 4.062293 GCACGTAGGTGGAATGCAATATA 58.938 43.478 16.75 0.00 44.54 0.86
919 1338 2.878406 GCACGTAGGTGGAATGCAATAT 59.122 45.455 16.75 0.00 44.54 1.28
920 1339 2.285083 GCACGTAGGTGGAATGCAATA 58.715 47.619 16.75 0.00 44.54 1.90
921 1340 1.094785 GCACGTAGGTGGAATGCAAT 58.905 50.000 16.75 0.00 44.54 3.56
1180 1613 2.173669 CATAAGCGGTGCTGGGACG 61.174 63.158 0.00 0.00 39.62 4.79
1192 1625 3.185594 TGGCATAATAACGTCGCATAAGC 59.814 43.478 0.00 0.00 37.42 3.09
1194 1627 5.524281 TCTTTGGCATAATAACGTCGCATAA 59.476 36.000 0.00 0.00 0.00 1.90
1195 1628 5.051153 TCTTTGGCATAATAACGTCGCATA 58.949 37.500 0.00 0.00 0.00 3.14
1197 1630 3.263261 TCTTTGGCATAATAACGTCGCA 58.737 40.909 0.00 0.00 0.00 5.10
1198 1631 3.936902 TCTTTGGCATAATAACGTCGC 57.063 42.857 0.00 0.00 0.00 5.19
1199 1632 5.176774 TGCTATCTTTGGCATAATAACGTCG 59.823 40.000 0.00 0.00 33.98 5.12
1200 1633 6.363473 GTGCTATCTTTGGCATAATAACGTC 58.637 40.000 0.00 0.00 41.73 4.34
1201 1634 5.050363 CGTGCTATCTTTGGCATAATAACGT 60.050 40.000 0.00 0.00 41.73 3.99
1203 1636 5.049405 AGCGTGCTATCTTTGGCATAATAAC 60.049 40.000 0.00 0.00 41.73 1.89
1205 1638 4.641396 AGCGTGCTATCTTTGGCATAATA 58.359 39.130 0.00 0.00 41.73 0.98
1206 1639 3.480470 AGCGTGCTATCTTTGGCATAAT 58.520 40.909 0.00 0.00 41.73 1.28
1207 1640 2.917933 AGCGTGCTATCTTTGGCATAA 58.082 42.857 0.00 0.00 41.73 1.90
1208 1641 2.620251 AGCGTGCTATCTTTGGCATA 57.380 45.000 0.00 0.00 41.73 3.14
1209 1642 1.672881 GAAGCGTGCTATCTTTGGCAT 59.327 47.619 0.00 0.00 41.73 4.40
1217 1942 2.713011 CATGCAAAGAAGCGTGCTATC 58.287 47.619 0.00 0.00 43.70 2.08
1227 1952 6.934056 ACTTGGTAATTATGCATGCAAAGAA 58.066 32.000 26.68 18.82 0.00 2.52
1228 1953 6.528537 ACTTGGTAATTATGCATGCAAAGA 57.471 33.333 26.68 13.81 0.00 2.52
1229 1954 7.546667 AGAAACTTGGTAATTATGCATGCAAAG 59.453 33.333 26.68 21.59 0.00 2.77
1231 1956 6.934056 AGAAACTTGGTAATTATGCATGCAA 58.066 32.000 26.68 9.94 0.00 4.08
1232 1957 6.152492 TGAGAAACTTGGTAATTATGCATGCA 59.848 34.615 25.04 25.04 0.00 3.96
1233 1958 6.563422 TGAGAAACTTGGTAATTATGCATGC 58.437 36.000 11.82 11.82 0.00 4.06
1234 1959 9.888878 CTATGAGAAACTTGGTAATTATGCATG 57.111 33.333 10.16 0.00 0.00 4.06
1244 1969 4.286032 ACTGCCACTATGAGAAACTTGGTA 59.714 41.667 0.00 0.00 0.00 3.25
1280 2030 1.423584 TCTCCTTGTCTCTTGTGGCA 58.576 50.000 0.00 0.00 0.00 4.92
1282 2032 2.035961 TCGTTCTCCTTGTCTCTTGTGG 59.964 50.000 0.00 0.00 0.00 4.17
1301 2249 3.621268 ACAAAGACGATCTCTCTCTCTCG 59.379 47.826 0.00 0.00 37.17 4.04
1309 2257 9.930693 ACTAATAAAGAAACAAAGACGATCTCT 57.069 29.630 0.00 0.00 0.00 3.10
1347 2295 0.736053 ACACGCCGAGAATCTCTCTC 59.264 55.000 8.77 0.00 46.35 3.20
1348 2296 0.453793 CACACGCCGAGAATCTCTCT 59.546 55.000 8.77 0.00 41.26 3.10
1349 2297 1.142778 GCACACGCCGAGAATCTCTC 61.143 60.000 8.77 0.61 40.06 3.20
1350 2298 1.153745 GCACACGCCGAGAATCTCT 60.154 57.895 8.77 0.00 0.00 3.10
1351 2299 1.153745 AGCACACGCCGAGAATCTC 60.154 57.895 0.00 0.00 39.83 2.75
1352 2300 1.446792 CAGCACACGCCGAGAATCT 60.447 57.895 0.00 0.00 39.83 2.40
1353 2301 1.738099 ACAGCACACGCCGAGAATC 60.738 57.895 0.00 0.00 39.83 2.52
1354 2302 2.029288 CACAGCACACGCCGAGAAT 61.029 57.895 0.00 0.00 39.83 2.40
1355 2303 2.661537 CACAGCACACGCCGAGAA 60.662 61.111 0.00 0.00 39.83 2.87
1360 2308 4.318021 CACAGCACAGCACACGCC 62.318 66.667 0.00 0.00 39.83 5.68
1363 2311 2.504461 GATCGCACAGCACAGCACAC 62.504 60.000 0.00 0.00 0.00 3.82
1378 2326 4.383850 AGGATCTTCTTGTCTGTGATCG 57.616 45.455 0.00 0.00 35.64 3.69
1386 2334 4.202010 CGAGAGAGGAAGGATCTTCTTGTC 60.202 50.000 8.25 8.25 41.66 3.18
1445 2404 5.331905 GCGATTAGATTAGAGTTTGACAGCG 60.332 44.000 0.00 0.00 0.00 5.18
1452 2411 7.278868 CCTCTTGTTGCGATTAGATTAGAGTTT 59.721 37.037 0.00 0.00 0.00 2.66
1477 2440 5.462398 GTGTGTCAAATATCGGTATGAGACC 59.538 44.000 14.62 8.96 45.91 3.85
1479 2442 6.040247 GTGTGTGTCAAATATCGGTATGAGA 58.960 40.000 0.00 0.00 0.00 3.27
1507 2490 4.022849 AGCAAGCGTAAGAGCAATCTTTTT 60.023 37.500 0.00 0.00 40.15 1.94
1551 2541 4.976116 GTGCAAATGTGAAAACTCTACACC 59.024 41.667 0.00 0.00 34.18 4.16
1554 2544 7.196331 AGAAAGTGCAAATGTGAAAACTCTAC 58.804 34.615 0.00 0.00 0.00 2.59
1599 2593 1.865865 ATATGGATGGCGTCGTCAAC 58.134 50.000 12.01 0.00 0.00 3.18
1608 2602 4.768968 AGCTTGATGGTAAATATGGATGGC 59.231 41.667 0.00 0.00 0.00 4.40
1609 2603 6.071728 GGAAGCTTGATGGTAAATATGGATGG 60.072 42.308 2.10 0.00 0.00 3.51
1619 2613 4.042809 TGAAGAAGGGAAGCTTGATGGTAA 59.957 41.667 2.10 0.00 0.00 2.85
1622 2616 3.077484 TGAAGAAGGGAAGCTTGATGG 57.923 47.619 2.10 0.00 0.00 3.51
1625 2619 5.200483 TCTTTTTGAAGAAGGGAAGCTTGA 58.800 37.500 2.10 0.00 0.00 3.02
1626 2620 5.520376 TCTTTTTGAAGAAGGGAAGCTTG 57.480 39.130 2.10 0.00 0.00 4.01
1627 2621 6.544928 TTTCTTTTTGAAGAAGGGAAGCTT 57.455 33.333 0.00 0.00 39.65 3.74
1628 2622 6.544928 TTTTCTTTTTGAAGAAGGGAAGCT 57.455 33.333 2.33 0.00 39.65 3.74
1654 2944 2.029623 GCCCATGCTTGATGAATGTCT 58.970 47.619 0.22 0.00 33.31 3.41
1689 2989 6.818644 CCAATATTACATTATGAGACGGAGGG 59.181 42.308 0.00 0.00 0.00 4.30
1690 2990 7.331934 CACCAATATTACATTATGAGACGGAGG 59.668 40.741 0.00 0.00 0.00 4.30
1691 2991 7.872993 ACACCAATATTACATTATGAGACGGAG 59.127 37.037 0.00 0.00 0.00 4.63
1692 2992 7.732025 ACACCAATATTACATTATGAGACGGA 58.268 34.615 0.00 0.00 0.00 4.69
1693 2993 7.655732 TGACACCAATATTACATTATGAGACGG 59.344 37.037 0.00 0.00 0.00 4.79
1694 2994 8.587952 TGACACCAATATTACATTATGAGACG 57.412 34.615 0.00 0.00 0.00 4.18
1720 3020 7.610305 ACTCATCCCATAATGTAAGACGTTTTT 59.390 33.333 0.00 0.00 0.00 1.94
1721 3021 7.110155 ACTCATCCCATAATGTAAGACGTTTT 58.890 34.615 0.00 0.00 0.00 2.43
1722 3022 6.650120 ACTCATCCCATAATGTAAGACGTTT 58.350 36.000 0.00 0.00 0.00 3.60
1723 3023 6.235231 ACTCATCCCATAATGTAAGACGTT 57.765 37.500 0.00 0.00 0.00 3.99
1724 3024 5.871396 ACTCATCCCATAATGTAAGACGT 57.129 39.130 0.00 0.00 0.00 4.34
1725 3025 6.982852 AGTACTCATCCCATAATGTAAGACG 58.017 40.000 0.00 0.00 0.00 4.18
1726 3026 9.262358 GAAAGTACTCATCCCATAATGTAAGAC 57.738 37.037 0.00 0.00 0.00 3.01
1727 3027 8.988060 TGAAAGTACTCATCCCATAATGTAAGA 58.012 33.333 0.00 0.00 0.00 2.10
1728 3028 9.046296 GTGAAAGTACTCATCCCATAATGTAAG 57.954 37.037 0.00 0.00 0.00 2.34
1729 3029 8.768397 AGTGAAAGTACTCATCCCATAATGTAA 58.232 33.333 0.00 0.00 0.00 2.41
1730 3030 8.204160 CAGTGAAAGTACTCATCCCATAATGTA 58.796 37.037 0.00 0.00 0.00 2.29
1731 3031 7.050377 CAGTGAAAGTACTCATCCCATAATGT 58.950 38.462 0.00 0.00 0.00 2.71
1732 3032 7.050377 ACAGTGAAAGTACTCATCCCATAATG 58.950 38.462 0.00 0.00 0.00 1.90
1733 3033 7.200434 ACAGTGAAAGTACTCATCCCATAAT 57.800 36.000 0.00 0.00 0.00 1.28
1734 3034 6.620877 ACAGTGAAAGTACTCATCCCATAA 57.379 37.500 0.00 0.00 0.00 1.90
1735 3035 6.212589 TGAACAGTGAAAGTACTCATCCCATA 59.787 38.462 0.00 0.00 0.00 2.74
1736 3036 5.013079 TGAACAGTGAAAGTACTCATCCCAT 59.987 40.000 0.00 0.00 0.00 4.00
1737 3037 4.346709 TGAACAGTGAAAGTACTCATCCCA 59.653 41.667 0.00 0.00 0.00 4.37
1738 3038 4.691216 GTGAACAGTGAAAGTACTCATCCC 59.309 45.833 0.00 0.00 0.00 3.85
1739 3039 5.297547 TGTGAACAGTGAAAGTACTCATCC 58.702 41.667 0.00 0.00 0.00 3.51
1740 3040 5.406780 CCTGTGAACAGTGAAAGTACTCATC 59.593 44.000 9.49 0.00 42.27 2.92
1741 3041 5.300752 CCTGTGAACAGTGAAAGTACTCAT 58.699 41.667 9.49 0.00 42.27 2.90
1742 3042 4.442893 CCCTGTGAACAGTGAAAGTACTCA 60.443 45.833 9.49 0.00 42.27 3.41
1743 3043 4.058817 CCCTGTGAACAGTGAAAGTACTC 58.941 47.826 9.49 0.00 42.27 2.59
1744 3044 3.181454 CCCCTGTGAACAGTGAAAGTACT 60.181 47.826 9.49 0.00 42.27 2.73
1745 3045 3.139077 CCCCTGTGAACAGTGAAAGTAC 58.861 50.000 9.49 0.00 42.27 2.73
1746 3046 3.042682 TCCCCTGTGAACAGTGAAAGTA 58.957 45.455 9.49 0.00 42.27 2.24
1747 3047 1.843851 TCCCCTGTGAACAGTGAAAGT 59.156 47.619 9.49 0.00 42.27 2.66
1748 3048 2.618709 GTTCCCCTGTGAACAGTGAAAG 59.381 50.000 9.49 0.00 43.27 2.62
1749 3049 2.650322 GTTCCCCTGTGAACAGTGAAA 58.350 47.619 9.49 0.00 43.27 2.69
1892 3381 5.886609 TCAGTGATGGGAAGTATGGAAAAA 58.113 37.500 0.00 0.00 0.00 1.94
1893 3382 5.512942 TCAGTGATGGGAAGTATGGAAAA 57.487 39.130 0.00 0.00 0.00 2.29
1894 3383 5.439721 CATCAGTGATGGGAAGTATGGAAA 58.560 41.667 23.17 0.00 36.51 3.13
1895 3384 4.686944 GCATCAGTGATGGGAAGTATGGAA 60.687 45.833 29.66 0.00 40.10 3.53
1896 3385 3.181451 GCATCAGTGATGGGAAGTATGGA 60.181 47.826 29.66 0.00 40.10 3.41
1897 3386 3.144506 GCATCAGTGATGGGAAGTATGG 58.855 50.000 29.66 5.47 40.10 2.74
1898 3387 4.063689 GAGCATCAGTGATGGGAAGTATG 58.936 47.826 29.66 7.63 40.10 2.39
1899 3388 3.072184 GGAGCATCAGTGATGGGAAGTAT 59.928 47.826 29.66 1.93 40.10 2.12
1900 3389 2.435805 GGAGCATCAGTGATGGGAAGTA 59.564 50.000 29.66 0.00 40.10 2.24
1901 3390 1.211457 GGAGCATCAGTGATGGGAAGT 59.789 52.381 29.66 0.00 40.10 3.01
1902 3391 1.476471 GGGAGCATCAGTGATGGGAAG 60.476 57.143 29.66 8.88 40.10 3.46
1903 3392 0.548031 GGGAGCATCAGTGATGGGAA 59.452 55.000 29.66 0.00 40.10 3.97
1904 3393 0.621280 TGGGAGCATCAGTGATGGGA 60.621 55.000 29.66 0.00 40.10 4.37
1905 3394 0.477204 ATGGGAGCATCAGTGATGGG 59.523 55.000 29.66 10.27 40.10 4.00
1914 3403 1.350351 AGGCATGTCTATGGGAGCATC 59.650 52.381 0.00 0.00 34.79 3.91
1938 3427 9.890629 TGTCGATTTAGTAAGAACCTAGTAGTA 57.109 33.333 0.00 0.00 0.00 1.82
1974 4070 3.507233 GCTTTCATTTGGAGACATGTCCA 59.493 43.478 22.21 12.20 45.37 4.02
1975 4071 3.760684 AGCTTTCATTTGGAGACATGTCC 59.239 43.478 22.21 13.24 42.32 4.02
1976 4072 5.182760 AGAAGCTTTCATTTGGAGACATGTC 59.817 40.000 18.47 18.47 42.32 3.06
1977 4073 5.075493 AGAAGCTTTCATTTGGAGACATGT 58.925 37.500 0.00 0.00 42.32 3.21
1978 4074 5.392811 GGAGAAGCTTTCATTTGGAGACATG 60.393 44.000 0.00 0.00 42.32 3.21
2026 4128 1.394917 CGCCACTGATTTACTGACTGC 59.605 52.381 0.00 0.00 0.00 4.40
2067 4178 0.251354 TCTGAAGATGGGCTGACTGC 59.749 55.000 0.00 0.00 41.94 4.40
2068 4179 1.738365 CGTCTGAAGATGGGCTGACTG 60.738 57.143 0.00 0.00 32.77 3.51
2069 4180 0.534412 CGTCTGAAGATGGGCTGACT 59.466 55.000 0.00 0.00 32.77 3.41
2070 4181 0.532573 TCGTCTGAAGATGGGCTGAC 59.467 55.000 0.00 0.00 0.00 3.51
2071 4182 0.532573 GTCGTCTGAAGATGGGCTGA 59.467 55.000 0.00 0.00 0.00 4.26
2073 4184 0.904865 TGGTCGTCTGAAGATGGGCT 60.905 55.000 0.00 0.00 0.00 5.19
2074 4185 0.741221 GTGGTCGTCTGAAGATGGGC 60.741 60.000 0.00 0.00 0.00 5.36
2109 4228 9.573133 GAAAGTTTTCTGAATTTTCTGTTGAGA 57.427 29.630 11.85 0.00 34.41 3.27
2127 4246 1.668101 TTGGTGCGGCCGAAAGTTTT 61.668 50.000 33.48 0.00 41.21 2.43
2153 4272 2.223203 GCTGAGAAAGATGATGGTTGCG 60.223 50.000 0.00 0.00 0.00 4.85
2173 4292 6.874134 ACATGAACGATATGACCCTAATAAGC 59.126 38.462 0.00 0.00 0.00 3.09
2182 4301 4.982916 GGAGTACACATGAACGATATGACC 59.017 45.833 0.00 0.00 0.00 4.02
2204 4326 7.147897 GGGTCATCTATTTTGGTAAAAAGAGGG 60.148 40.741 5.92 0.92 42.37 4.30
2208 4330 8.585018 AGTTGGGTCATCTATTTTGGTAAAAAG 58.415 33.333 0.00 0.00 38.62 2.27
2210 4332 8.485578 AAGTTGGGTCATCTATTTTGGTAAAA 57.514 30.769 0.00 0.00 34.41 1.52
2211 4333 9.016438 GTAAGTTGGGTCATCTATTTTGGTAAA 57.984 33.333 0.00 0.00 0.00 2.01
2213 4335 7.924541 AGTAAGTTGGGTCATCTATTTTGGTA 58.075 34.615 0.00 0.00 0.00 3.25
2214 4336 6.790319 AGTAAGTTGGGTCATCTATTTTGGT 58.210 36.000 0.00 0.00 0.00 3.67
2215 4337 7.012421 GCTAGTAAGTTGGGTCATCTATTTTGG 59.988 40.741 0.00 0.00 0.00 3.28
2216 4338 7.770897 AGCTAGTAAGTTGGGTCATCTATTTTG 59.229 37.037 0.00 0.00 0.00 2.44
2217 4339 7.770897 CAGCTAGTAAGTTGGGTCATCTATTTT 59.229 37.037 0.00 0.00 30.77 1.82
2218 4340 7.275920 CAGCTAGTAAGTTGGGTCATCTATTT 58.724 38.462 0.00 0.00 30.77 1.40
2219 4341 6.821388 CAGCTAGTAAGTTGGGTCATCTATT 58.179 40.000 0.00 0.00 30.77 1.73
2220 4342 6.412362 CAGCTAGTAAGTTGGGTCATCTAT 57.588 41.667 0.00 0.00 30.77 1.98
2221 4343 5.854010 CAGCTAGTAAGTTGGGTCATCTA 57.146 43.478 0.00 0.00 30.77 1.98
2222 4344 4.744795 CAGCTAGTAAGTTGGGTCATCT 57.255 45.455 0.00 0.00 30.77 2.90
2230 4352 4.810191 AAGAGTCCCAGCTAGTAAGTTG 57.190 45.455 0.00 0.00 33.97 3.16
2231 4353 5.827326 AAAAGAGTCCCAGCTAGTAAGTT 57.173 39.130 0.00 0.00 0.00 2.66
2232 4354 5.827326 AAAAAGAGTCCCAGCTAGTAAGT 57.173 39.130 0.00 0.00 0.00 2.24
2233 4355 6.937392 AGTAAAAAGAGTCCCAGCTAGTAAG 58.063 40.000 0.00 0.00 0.00 2.34
2241 4488 4.004196 ACGGAAGTAAAAAGAGTCCCAG 57.996 45.455 0.00 0.00 46.88 4.45
2273 4539 1.336148 GGTTGCACACACACATCATGG 60.336 52.381 0.00 0.00 0.00 3.66
2367 4637 2.822399 CAGCCGTAGATGGGGTCC 59.178 66.667 0.00 0.00 31.71 4.46
2580 4856 3.867549 CTGATCCACAGCCATGTCA 57.132 52.632 0.00 0.00 37.65 3.58
2589 4865 2.994995 ACGCCGGACTGATCCACA 60.995 61.111 5.05 0.00 46.67 4.17
2595 4871 2.678580 TCCATGACGCCGGACTGA 60.679 61.111 5.05 0.00 0.00 3.41
2643 4919 1.078143 GTCGCCCAGCCTTCAGAAT 60.078 57.895 0.00 0.00 0.00 2.40
2657 4933 7.760340 AGCCTAAGTAATAATATAGCTTGTCGC 59.240 37.037 0.00 0.00 39.57 5.19
2687 4963 3.521560 TCACCTGATCACGCACTAAATC 58.478 45.455 0.00 0.00 0.00 2.17
2688 4964 3.610040 TCACCTGATCACGCACTAAAT 57.390 42.857 0.00 0.00 0.00 1.40
2689 4965 3.261580 CATCACCTGATCACGCACTAAA 58.738 45.455 0.00 0.00 31.21 1.85
2772 5058 1.376466 GGCTTTCACTCTGCCCTCA 59.624 57.895 0.00 0.00 40.71 3.86
2783 5069 2.569404 GAGGAGAGAAGAAGGGCTTTCA 59.431 50.000 12.17 0.00 38.31 2.69
2784 5070 2.837591 AGAGGAGAGAAGAAGGGCTTTC 59.162 50.000 0.32 0.32 36.83 2.62
2785 5071 2.837591 GAGAGGAGAGAAGAAGGGCTTT 59.162 50.000 0.00 0.00 36.83 3.51
2787 5073 1.342975 GGAGAGGAGAGAAGAAGGGCT 60.343 57.143 0.00 0.00 0.00 5.19
2804 5094 2.447443 TGCTGGAGGCGTATATAGGAG 58.553 52.381 6.62 0.00 45.43 3.69
2806 5096 2.563179 ACTTGCTGGAGGCGTATATAGG 59.437 50.000 0.00 0.00 45.43 2.57
2809 5099 1.344763 GGACTTGCTGGAGGCGTATAT 59.655 52.381 0.00 0.00 45.43 0.86
2810 5100 0.750850 GGACTTGCTGGAGGCGTATA 59.249 55.000 0.00 0.00 45.43 1.47
2812 5102 2.978824 GGACTTGCTGGAGGCGTA 59.021 61.111 0.00 0.00 45.43 4.42
2813 5103 4.379243 CGGACTTGCTGGAGGCGT 62.379 66.667 0.00 0.00 45.43 5.68
2817 5107 2.859273 AATCCGCGGACTTGCTGGAG 62.859 60.000 33.75 0.00 39.58 3.86
2825 5115 1.303317 AGCCAAAAATCCGCGGACT 60.303 52.632 33.75 19.69 0.00 3.85
2831 5121 2.153366 AAAGCACAGCCAAAAATCCG 57.847 45.000 0.00 0.00 0.00 4.18
2850 5140 3.374042 TTCTTCCACCCTTGTCAACAA 57.626 42.857 0.00 0.00 0.00 2.83
2860 5150 2.370849 TGTAGGAGTGTTTCTTCCACCC 59.629 50.000 0.00 0.00 33.20 4.61
2864 5154 2.303311 AGCCTGTAGGAGTGTTTCTTCC 59.697 50.000 1.17 0.00 37.39 3.46
2938 5239 5.206587 AGATAGAATTCAAAGGGCAGCAAT 58.793 37.500 8.44 0.00 0.00 3.56
2960 5261 1.473278 GGAGTCCGACTGTCCAACTAG 59.527 57.143 5.57 0.00 0.00 2.57
2983 5284 1.696063 ACACAGCCTGCATTTCTGTT 58.304 45.000 11.45 3.74 38.85 3.16
2985 5286 2.806608 AAACACAGCCTGCATTTCTG 57.193 45.000 8.03 8.03 0.00 3.02
3001 5417 9.899226 AGAGATGCAATAACTTGAACTAAAAAC 57.101 29.630 0.00 0.00 34.04 2.43
3013 5429 8.663209 ATCTACCAGATAGAGATGCAATAACT 57.337 34.615 0.00 0.00 43.35 2.24
3016 5432 9.927081 TGATATCTACCAGATAGAGATGCAATA 57.073 33.333 3.98 0.00 41.09 1.90
3017 5433 8.835550 TGATATCTACCAGATAGAGATGCAAT 57.164 34.615 3.98 0.00 41.09 3.56
3018 5434 8.112183 TCTGATATCTACCAGATAGAGATGCAA 58.888 37.037 3.98 0.00 41.09 4.08
3019 5435 7.637511 TCTGATATCTACCAGATAGAGATGCA 58.362 38.462 3.98 0.00 41.09 3.96
3020 5436 8.696043 ATCTGATATCTACCAGATAGAGATGC 57.304 38.462 14.16 0.00 45.34 3.91
3077 5514 1.806542 TCGAAGCTGTTTCATGCCTTC 59.193 47.619 5.12 0.00 35.43 3.46
3109 5546 0.531532 CTCGGGAGCCAGCATTGTAG 60.532 60.000 0.00 0.00 0.00 2.74
3131 5578 4.084328 AGCTTTGTTTCTTCAGATCGTTCG 60.084 41.667 0.00 0.00 0.00 3.95
3153 5600 9.626045 GTAATCTGGTAAAAATTTGGTTCTCAG 57.374 33.333 0.00 0.00 0.00 3.35
3232 5680 5.387279 CAATGCTCAATTGCAATTTTGGAC 58.613 37.500 21.95 10.46 46.61 4.02
3233 5681 5.614923 CAATGCTCAATTGCAATTTTGGA 57.385 34.783 21.95 17.58 46.61 3.53
3269 5717 0.782384 CGCCGGATAACTTATGTCGC 59.218 55.000 5.05 0.00 0.00 5.19
3270 5718 0.782384 GCGCCGGATAACTTATGTCG 59.218 55.000 5.05 0.00 0.00 4.35
3285 5734 1.371389 CGTAGGAAGATACCGCGCC 60.371 63.158 0.00 0.00 34.73 6.53
3344 5793 2.049618 CCTATGCGCCGAGAGAGC 60.050 66.667 4.18 0.00 35.63 4.09
3352 5801 0.179045 AGTTCCATGACCTATGCGCC 60.179 55.000 4.18 0.00 35.37 6.53
3412 5868 1.726265 GTAGGGCGTAGGACTCACG 59.274 63.158 0.00 0.00 42.24 4.35
3472 5928 1.967319 TTGGTCCAGACAGCAAAGAC 58.033 50.000 0.00 0.00 0.00 3.01
3496 5952 2.057922 ACCCTCAAGAAGGCTGAAGAA 58.942 47.619 0.00 0.00 44.71 2.52
3545 6001 6.939730 TGCCATGAGCCTCGATAAATAAATAA 59.060 34.615 0.00 0.00 42.71 1.40
3546 6002 6.371548 GTGCCATGAGCCTCGATAAATAAATA 59.628 38.462 0.00 0.00 42.71 1.40
3547 6003 5.182001 GTGCCATGAGCCTCGATAAATAAAT 59.818 40.000 0.00 0.00 42.71 1.40
3548 6004 4.515191 GTGCCATGAGCCTCGATAAATAAA 59.485 41.667 0.00 0.00 42.71 1.40
3562 6018 3.865446 TGAGTCTATGTTGTGCCATGAG 58.135 45.455 0.00 0.00 0.00 2.90
3590 6046 4.795278 CCGTCTGCATCTTTTTGCTAATTC 59.205 41.667 0.00 0.00 43.18 2.17
3613 6069 2.029844 GCAGTCACGAGAGGTTGGC 61.030 63.158 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.