Multiple sequence alignment - TraesCS4B01G015100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G015100 chr4B 100.000 4307 0 0 1 4307 11350841 11346535 0.000000e+00 7954.0
1 TraesCS4B01G015100 chr4B 95.000 40 2 0 2160 2199 82373118 82373157 3.600000e-06 63.9
2 TraesCS4B01G015100 chr1B 97.396 3379 82 4 935 4307 637286361 637282983 0.000000e+00 5747.0
3 TraesCS4B01G015100 chr1B 93.606 1001 41 8 2639 3637 651731558 651730579 0.000000e+00 1472.0
4 TraesCS4B01G015100 chr1B 93.207 1001 43 4 2639 3637 17135204 17136181 0.000000e+00 1448.0
5 TraesCS4B01G015100 chr1B 96.667 570 17 2 1 568 637287374 637286805 0.000000e+00 946.0
6 TraesCS4B01G015100 chr1B 88.544 515 52 5 987 1498 658914870 658914360 6.120000e-173 617.0
7 TraesCS4B01G015100 chr1B 97.571 247 6 0 578 824 637286594 637286348 1.430000e-114 424.0
8 TraesCS4B01G015100 chr1B 90.780 282 24 2 1535 1815 658914353 658914073 4.070000e-100 375.0
9 TraesCS4B01G015100 chr5A 93.706 1001 40 3 2639 3637 692979665 692980644 0.000000e+00 1478.0
10 TraesCS4B01G015100 chr5A 93.207 1001 45 3 2639 3637 693957862 693958841 0.000000e+00 1450.0
11 TraesCS4B01G015100 chr5A 95.495 666 24 5 3645 4307 629867100 629867762 0.000000e+00 1059.0
12 TraesCS4B01G015100 chr5A 89.583 672 55 11 3645 4307 516607387 516608052 0.000000e+00 839.0
13 TraesCS4B01G015100 chr5A 91.455 550 39 6 3760 4306 692980841 692981385 0.000000e+00 749.0
14 TraesCS4B01G015100 chr5A 89.963 269 17 3 1934 2199 4427206 4427467 5.330000e-89 339.0
15 TraesCS4B01G015100 chr5A 89.591 269 18 3 1934 2199 630723840 630724101 2.480000e-87 333.0
16 TraesCS4B01G015100 chr6B 93.506 1001 41 4 2639 3637 399208057 399207079 0.000000e+00 1467.0
17 TraesCS4B01G015100 chr6B 94.586 665 32 4 3645 4307 423139116 423138454 0.000000e+00 1026.0
18 TraesCS4B01G015100 chr6B 94.461 668 30 5 3645 4307 101192181 101192846 0.000000e+00 1022.0
19 TraesCS4B01G015100 chr6B 91.636 550 40 5 3760 4306 399206901 399206355 0.000000e+00 756.0
20 TraesCS4B01G015100 chr6B 80.592 304 35 5 2188 2491 715680757 715680478 3.370000e-51 213.0
21 TraesCS4B01G015100 chr6B 93.333 90 6 0 2511 2600 76448946 76448857 2.700000e-27 134.0
22 TraesCS4B01G015100 chr2B 93.506 1001 41 4 2639 3637 435352860 435351882 0.000000e+00 1467.0
23 TraesCS4B01G015100 chr2B 91.369 1008 71 9 2636 3637 622030317 622029320 0.000000e+00 1365.0
24 TraesCS4B01G015100 chr2B 93.675 664 39 3 3645 4306 760346446 760345784 0.000000e+00 990.0
25 TraesCS4B01G015100 chr2B 91.582 392 17 5 1817 2199 502652182 502652566 1.060000e-145 527.0
26 TraesCS4B01G015100 chr2B 89.578 403 41 1 2198 2600 5923050 5922649 1.070000e-140 510.0
27 TraesCS4B01G015100 chr2B 87.006 177 18 4 3646 3818 72800306 72800481 1.220000e-45 195.0
28 TraesCS4B01G015100 chr6A 93.293 999 58 7 2639 3632 394643003 394643997 0.000000e+00 1465.0
29 TraesCS4B01G015100 chr6A 79.344 305 32 8 2188 2491 614589124 614588850 7.350000e-43 185.0
30 TraesCS4B01G015100 chr4A 93.407 1001 41 4 2639 3637 602464694 602463717 0.000000e+00 1459.0
31 TraesCS4B01G015100 chr4A 92.893 999 59 8 2639 3632 574767029 574766038 0.000000e+00 1441.0
32 TraesCS4B01G015100 chr4A 82.432 148 9 1 2511 2641 690648288 690648141 3.520000e-21 113.0
33 TraesCS4B01G015100 chr3A 92.993 999 57 6 2639 3632 224968721 224969711 0.000000e+00 1445.0
34 TraesCS4B01G015100 chr3A 93.464 306 20 0 2336 2641 346427859 346427554 5.080000e-124 455.0
35 TraesCS4B01G015100 chr3A 79.139 302 54 7 2188 2489 103682990 103683282 2.630000e-47 200.0
36 TraesCS4B01G015100 chr2D 95.142 844 30 5 1808 2641 29139373 29140215 0.000000e+00 1321.0
37 TraesCS4B01G015100 chr2D 90.336 952 48 16 5 928 29132628 29133563 0.000000e+00 1208.0
38 TraesCS4B01G015100 chr2D 89.832 954 54 17 5 928 63383144 63382204 0.000000e+00 1184.0
39 TraesCS4B01G015100 chr2D 90.769 390 19 7 1808 2187 432582511 432582893 4.970000e-139 505.0
40 TraesCS4B01G015100 chr2D 90.513 390 20 9 1808 2187 432539207 432539589 2.310000e-137 499.0
41 TraesCS4B01G015100 chr2D 90.513 390 20 6 1808 2187 537412116 537412498 2.310000e-137 499.0
42 TraesCS4B01G015100 chr6D 94.905 844 33 4 1808 2641 60795249 60796092 0.000000e+00 1312.0
43 TraesCS4B01G015100 chr6D 89.822 786 36 14 170 928 60794050 60794818 0.000000e+00 968.0
44 TraesCS4B01G015100 chr6D 90.769 390 19 8 1808 2187 460928359 460928741 4.970000e-139 505.0
45 TraesCS4B01G015100 chr6D 85.253 217 26 2 2188 2398 469537845 469537629 7.250000e-53 219.0
46 TraesCS4B01G015100 chr5B 91.832 955 50 17 1 928 500555483 500554530 0.000000e+00 1306.0
47 TraesCS4B01G015100 chr5B 89.793 627 37 10 328 928 510439611 510440236 0.000000e+00 778.0
48 TraesCS4B01G015100 chr5B 98.246 57 1 0 2334 2390 613492611 613492555 2.740000e-17 100.0
49 TraesCS4B01G015100 chr3B 91.736 956 48 21 1 928 740148738 740149690 0.000000e+00 1299.0
50 TraesCS4B01G015100 chr3B 87.500 136 12 2 2511 2641 221508698 221508563 7.460000e-33 152.0
51 TraesCS4B01G015100 chr3B 91.579 95 8 0 832 926 369040732 369040826 9.720000e-27 132.0
52 TraesCS4B01G015100 chr3B 91.489 94 7 1 2511 2604 215398971 215398879 1.260000e-25 128.0
53 TraesCS4B01G015100 chr5D 94.194 844 39 4 1808 2641 471426519 471425676 0.000000e+00 1279.0
54 TraesCS4B01G015100 chr5D 84.758 433 20 11 522 928 546416864 546417276 4.040000e-105 392.0
55 TraesCS4B01G015100 chr5D 88.930 271 18 4 1934 2199 61860112 61860375 1.490000e-84 324.0
56 TraesCS4B01G015100 chr5D 84.091 132 10 3 1818 1938 61859642 61859773 2.720000e-22 117.0
57 TraesCS4B01G015100 chr7B 90.681 955 60 10 2 928 511940412 511939459 0.000000e+00 1243.0
58 TraesCS4B01G015100 chr7B 77.069 737 90 33 3645 4307 675202609 675203340 6.850000e-93 351.0
59 TraesCS4B01G015100 chr7B 92.857 98 7 0 832 929 270952154 270952251 4.490000e-30 143.0
60 TraesCS4B01G015100 chr7D 90.231 952 55 16 5 928 490749082 490748141 0.000000e+00 1208.0
61 TraesCS4B01G015100 chr7D 89.496 952 63 19 5 928 67749300 67748358 0.000000e+00 1170.0
62 TraesCS4B01G015100 chr7D 94.837 523 23 3 1 521 157757065 157757585 0.000000e+00 813.0
63 TraesCS4B01G015100 chr7D 95.000 40 2 0 2160 2199 192977996 192977957 3.600000e-06 63.9
64 TraesCS4B01G015100 chr1D 88.235 952 53 14 5 928 446664988 446664068 0.000000e+00 1083.0
65 TraesCS4B01G015100 chr1D 88.418 354 33 4 980 1327 473862431 473862080 1.850000e-113 420.0
66 TraesCS4B01G015100 chr7A 93.114 668 38 5 3645 4306 14527191 14526526 0.000000e+00 972.0
67 TraesCS4B01G015100 chr1A 87.307 843 86 12 981 1815 568108306 568107477 0.000000e+00 944.0
68 TraesCS4B01G015100 chr2A 82.432 148 9 1 2511 2641 576664468 576664615 3.520000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G015100 chr4B 11346535 11350841 4306 True 7954.000000 7954 100.000000 1 4307 1 chr4B.!!$R1 4306
1 TraesCS4B01G015100 chr1B 637282983 637287374 4391 True 2372.333333 5747 97.211333 1 4307 3 chr1B.!!$R2 4306
2 TraesCS4B01G015100 chr1B 651730579 651731558 979 True 1472.000000 1472 93.606000 2639 3637 1 chr1B.!!$R1 998
3 TraesCS4B01G015100 chr1B 17135204 17136181 977 False 1448.000000 1448 93.207000 2639 3637 1 chr1B.!!$F1 998
4 TraesCS4B01G015100 chr1B 658914073 658914870 797 True 496.000000 617 89.662000 987 1815 2 chr1B.!!$R3 828
5 TraesCS4B01G015100 chr5A 693957862 693958841 979 False 1450.000000 1450 93.207000 2639 3637 1 chr5A.!!$F5 998
6 TraesCS4B01G015100 chr5A 692979665 692981385 1720 False 1113.500000 1478 92.580500 2639 4306 2 chr5A.!!$F6 1667
7 TraesCS4B01G015100 chr5A 629867100 629867762 662 False 1059.000000 1059 95.495000 3645 4307 1 chr5A.!!$F3 662
8 TraesCS4B01G015100 chr5A 516607387 516608052 665 False 839.000000 839 89.583000 3645 4307 1 chr5A.!!$F2 662
9 TraesCS4B01G015100 chr6B 399206355 399208057 1702 True 1111.500000 1467 92.571000 2639 4306 2 chr6B.!!$R4 1667
10 TraesCS4B01G015100 chr6B 423138454 423139116 662 True 1026.000000 1026 94.586000 3645 4307 1 chr6B.!!$R2 662
11 TraesCS4B01G015100 chr6B 101192181 101192846 665 False 1022.000000 1022 94.461000 3645 4307 1 chr6B.!!$F1 662
12 TraesCS4B01G015100 chr2B 435351882 435352860 978 True 1467.000000 1467 93.506000 2639 3637 1 chr2B.!!$R2 998
13 TraesCS4B01G015100 chr2B 622029320 622030317 997 True 1365.000000 1365 91.369000 2636 3637 1 chr2B.!!$R3 1001
14 TraesCS4B01G015100 chr2B 760345784 760346446 662 True 990.000000 990 93.675000 3645 4306 1 chr2B.!!$R4 661
15 TraesCS4B01G015100 chr6A 394643003 394643997 994 False 1465.000000 1465 93.293000 2639 3632 1 chr6A.!!$F1 993
16 TraesCS4B01G015100 chr4A 602463717 602464694 977 True 1459.000000 1459 93.407000 2639 3637 1 chr4A.!!$R2 998
17 TraesCS4B01G015100 chr4A 574766038 574767029 991 True 1441.000000 1441 92.893000 2639 3632 1 chr4A.!!$R1 993
18 TraesCS4B01G015100 chr3A 224968721 224969711 990 False 1445.000000 1445 92.993000 2639 3632 1 chr3A.!!$F2 993
19 TraesCS4B01G015100 chr2D 29139373 29140215 842 False 1321.000000 1321 95.142000 1808 2641 1 chr2D.!!$F2 833
20 TraesCS4B01G015100 chr2D 29132628 29133563 935 False 1208.000000 1208 90.336000 5 928 1 chr2D.!!$F1 923
21 TraesCS4B01G015100 chr2D 63382204 63383144 940 True 1184.000000 1184 89.832000 5 928 1 chr2D.!!$R1 923
22 TraesCS4B01G015100 chr6D 60794050 60796092 2042 False 1140.000000 1312 92.363500 170 2641 2 chr6D.!!$F2 2471
23 TraesCS4B01G015100 chr5B 500554530 500555483 953 True 1306.000000 1306 91.832000 1 928 1 chr5B.!!$R1 927
24 TraesCS4B01G015100 chr5B 510439611 510440236 625 False 778.000000 778 89.793000 328 928 1 chr5B.!!$F1 600
25 TraesCS4B01G015100 chr3B 740148738 740149690 952 False 1299.000000 1299 91.736000 1 928 1 chr3B.!!$F2 927
26 TraesCS4B01G015100 chr5D 471425676 471426519 843 True 1279.000000 1279 94.194000 1808 2641 1 chr5D.!!$R1 833
27 TraesCS4B01G015100 chr5D 61859642 61860375 733 False 220.500000 324 86.510500 1818 2199 2 chr5D.!!$F2 381
28 TraesCS4B01G015100 chr7B 511939459 511940412 953 True 1243.000000 1243 90.681000 2 928 1 chr7B.!!$R1 926
29 TraesCS4B01G015100 chr7B 675202609 675203340 731 False 351.000000 351 77.069000 3645 4307 1 chr7B.!!$F2 662
30 TraesCS4B01G015100 chr7D 490748141 490749082 941 True 1208.000000 1208 90.231000 5 928 1 chr7D.!!$R3 923
31 TraesCS4B01G015100 chr7D 67748358 67749300 942 True 1170.000000 1170 89.496000 5 928 1 chr7D.!!$R1 923
32 TraesCS4B01G015100 chr7D 157757065 157757585 520 False 813.000000 813 94.837000 1 521 1 chr7D.!!$F1 520
33 TraesCS4B01G015100 chr1D 446664068 446664988 920 True 1083.000000 1083 88.235000 5 928 1 chr1D.!!$R1 923
34 TraesCS4B01G015100 chr7A 14526526 14527191 665 True 972.000000 972 93.114000 3645 4306 1 chr7A.!!$R1 661
35 TraesCS4B01G015100 chr1A 568107477 568108306 829 True 944.000000 944 87.307000 981 1815 1 chr1A.!!$R1 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 1186 0.321122 CTGACCTGGTGCACTCCTTC 60.321 60.000 17.98 9.21 0.00 3.46 F
1075 1320 0.165944 GTATATTGCATCGCCGTGCC 59.834 55.000 8.71 0.00 44.43 5.01 F
1201 1446 0.688087 GAACGAGGGGGAGGAGATGT 60.688 60.000 0.00 0.00 0.00 3.06 F
1231 1476 1.205893 GGCTGGAGTTCATCGAGAAGT 59.794 52.381 0.00 0.00 42.56 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2289 3068 0.466963 TGCGCTCACCATCTGATGAT 59.533 50.000 18.92 0.00 0.00 2.45 R
2796 3576 1.134818 ACGTTTCAGGAGCGCATATGA 60.135 47.619 11.47 7.32 0.00 2.15 R
3187 3974 2.258109 GTTCTCCACCTTCTGGTACCT 58.742 52.381 14.36 0.00 46.60 3.08 R
3314 4104 5.104776 AGCATCCAAAGTAACTGCAGATCTA 60.105 40.000 23.35 5.77 35.32 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 7.390162 CCCAATTTTGCAACAACTATTTGGTAT 59.610 33.333 15.45 0.00 37.00 2.73
192 197 8.496751 GGTCTAAGTCTAGTGAAAATTTGTGTC 58.503 37.037 0.00 0.00 0.00 3.67
378 388 6.155910 ACATCCATCCATCCATCTATCTACAC 59.844 42.308 0.00 0.00 0.00 2.90
576 787 2.444706 CTGATCCCTCCTCCGGCA 60.445 66.667 0.00 0.00 0.00 5.69
772 985 4.329545 GGCGGTGCTTCCAGACCA 62.330 66.667 0.00 0.00 35.57 4.02
931 1170 4.687215 GCACCCTGCAGTCGCTGA 62.687 66.667 13.81 0.00 44.26 4.26
932 1171 2.740055 CACCCTGCAGTCGCTGAC 60.740 66.667 13.81 1.15 39.30 3.51
934 1173 3.699894 CCCTGCAGTCGCTGACCT 61.700 66.667 13.81 0.00 39.30 3.85
937 1176 3.231889 CTGCAGTCGCTGACCTGGT 62.232 63.158 5.25 0.00 39.30 4.00
938 1177 2.740055 GCAGTCGCTGACCTGGTG 60.740 66.667 2.82 0.00 32.44 4.17
940 1179 3.233980 AGTCGCTGACCTGGTGCA 61.234 61.111 2.82 1.18 32.18 4.57
941 1180 3.044305 GTCGCTGACCTGGTGCAC 61.044 66.667 8.80 8.80 0.00 4.57
942 1181 3.233980 TCGCTGACCTGGTGCACT 61.234 61.111 17.98 0.00 0.00 4.40
944 1183 2.359230 GCTGACCTGGTGCACTCC 60.359 66.667 17.98 0.70 0.00 3.85
945 1184 2.888447 GCTGACCTGGTGCACTCCT 61.888 63.158 17.98 0.00 0.00 3.69
946 1185 1.757306 CTGACCTGGTGCACTCCTT 59.243 57.895 17.98 0.00 0.00 3.36
947 1186 0.321122 CTGACCTGGTGCACTCCTTC 60.321 60.000 17.98 9.21 0.00 3.46
948 1187 0.764369 TGACCTGGTGCACTCCTTCT 60.764 55.000 17.98 0.00 0.00 2.85
950 1189 1.623811 GACCTGGTGCACTCCTTCTAA 59.376 52.381 17.98 0.00 0.00 2.10
964 1203 4.820775 TCCTTCTAATCTCCATAGCCACT 58.179 43.478 0.00 0.00 0.00 4.00
968 1207 6.830838 CCTTCTAATCTCCATAGCCACTTTTT 59.169 38.462 0.00 0.00 0.00 1.94
998 1237 1.079956 CTTGCTCTGCTCTCTGCGT 60.080 57.895 0.00 0.00 46.63 5.24
1075 1320 0.165944 GTATATTGCATCGCCGTGCC 59.834 55.000 8.71 0.00 44.43 5.01
1177 1422 1.002624 GCGGTGGTTGAAGATGGGA 60.003 57.895 0.00 0.00 0.00 4.37
1201 1446 0.688087 GAACGAGGGGGAGGAGATGT 60.688 60.000 0.00 0.00 0.00 3.06
1231 1476 1.205893 GGCTGGAGTTCATCGAGAAGT 59.794 52.381 0.00 0.00 42.56 3.01
1233 1478 3.119101 GGCTGGAGTTCATCGAGAAGTTA 60.119 47.826 0.00 0.00 39.98 2.24
1503 1915 4.214119 TGCAGCAGAAGTAAATGACAGTTC 59.786 41.667 0.00 0.00 0.00 3.01
2190 2969 9.507280 CTGAAGTTTTGCTATGTATAACATTGG 57.493 33.333 0.00 0.00 39.88 3.16
2192 2971 9.289303 GAAGTTTTGCTATGTATAACATTGGTG 57.711 33.333 0.00 0.00 39.88 4.17
2225 3004 1.380302 GCTTGTGGGGATGGTCAGT 59.620 57.895 0.00 0.00 0.00 3.41
2289 3068 4.501714 GCACCGGCCGTATCGACA 62.502 66.667 26.12 0.00 0.00 4.35
2405 3184 3.998913 TCCATTGCTGGATGTTGACTA 57.001 42.857 0.00 0.00 46.95 2.59
2423 3202 4.660303 TGACTAGATGTGGGATTTGCCTAT 59.340 41.667 0.00 0.00 36.66 2.57
2696 3475 5.240013 AGCATCTATCTTCCCATCTTTCC 57.760 43.478 0.00 0.00 0.00 3.13
2714 3494 3.150458 TCCGAGTGGAGAAACTCTGTA 57.850 47.619 3.13 0.00 43.71 2.74
2857 3637 6.183360 GCTCCATGTTCCCATTTAAGCTAAAT 60.183 38.462 0.00 0.00 38.84 1.40
2888 3668 8.807581 GTGCACATAGTTGCCTAATTTAAATTC 58.192 33.333 16.56 4.17 42.25 2.17
3026 3808 5.064579 GCTTGCCTGCTTCAAAGTTTTAAAA 59.935 36.000 0.00 0.00 0.00 1.52
3314 4104 3.937706 CGAGCTCCAAGATGAAGTTCAAT 59.062 43.478 10.14 0.00 0.00 2.57
3445 4235 0.251386 TCAGAGGAGACCGAAGCTGT 60.251 55.000 0.00 0.00 0.00 4.40
3574 4386 7.814587 AGGTAAATTAGTTACTACAACGTGGTC 59.185 37.037 0.00 0.00 41.70 4.02
3638 4450 2.562738 GGGGTTGATGAGTTTCTTTGGG 59.437 50.000 0.00 0.00 0.00 4.12
3792 4708 2.734606 CTGCCAAACTGTGCAATGATTG 59.265 45.455 0.00 0.00 36.98 2.67
3871 4819 2.125350 GCTCGTCTCAAGGCCCAG 60.125 66.667 0.00 0.00 0.00 4.45
3962 4915 7.864108 TGGTAGATTGAATAAATGGACTGTG 57.136 36.000 0.00 0.00 0.00 3.66
4123 5124 1.686052 ACATCATTGCCACGTTGGTTT 59.314 42.857 6.02 0.00 40.46 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.616774 AATAGTTGTTGCAAAATTGGGTTG 57.383 33.333 0.00 0.00 0.00 3.77
41 42 5.530543 ACCAAATAGTTGTTGCAAAATTGGG 59.469 36.000 18.75 14.03 39.21 4.12
205 211 8.915871 TTGTGAAGCAGCTATCAAAAATATTC 57.084 30.769 0.00 0.00 0.00 1.75
716 929 3.813724 CAGGGTGATGGGAGGGCC 61.814 72.222 0.00 0.00 0.00 5.80
760 973 1.296392 CCATCGTGGTCTGGAAGCA 59.704 57.895 0.00 0.00 34.24 3.91
928 1167 0.321122 GAAGGAGTGCACCAGGTCAG 60.321 60.000 14.63 0.00 0.00 3.51
929 1168 0.764369 AGAAGGAGTGCACCAGGTCA 60.764 55.000 14.63 0.00 0.00 4.02
931 1170 1.729586 TTAGAAGGAGTGCACCAGGT 58.270 50.000 14.63 0.00 0.00 4.00
932 1171 2.503356 AGATTAGAAGGAGTGCACCAGG 59.497 50.000 14.63 0.00 0.00 4.45
934 1173 2.501723 GGAGATTAGAAGGAGTGCACCA 59.498 50.000 14.63 0.00 0.00 4.17
937 1176 4.039730 GCTATGGAGATTAGAAGGAGTGCA 59.960 45.833 0.00 0.00 0.00 4.57
938 1177 4.562552 GGCTATGGAGATTAGAAGGAGTGC 60.563 50.000 0.00 0.00 0.00 4.40
940 1179 4.591072 GTGGCTATGGAGATTAGAAGGAGT 59.409 45.833 0.00 0.00 0.00 3.85
941 1180 4.837860 AGTGGCTATGGAGATTAGAAGGAG 59.162 45.833 0.00 0.00 0.00 3.69
942 1181 4.820775 AGTGGCTATGGAGATTAGAAGGA 58.179 43.478 0.00 0.00 0.00 3.36
944 1183 7.872113 AAAAAGTGGCTATGGAGATTAGAAG 57.128 36.000 0.00 0.00 0.00 2.85
998 1237 1.395045 CGTGAGGCCTAGCTCCATCA 61.395 60.000 4.42 0.00 0.00 3.07
1052 1294 0.669318 CGGCGATGCAATATACCCGT 60.669 55.000 0.00 0.00 0.00 5.28
1177 1422 1.918800 CCTCCCCCTCGTTCACCTT 60.919 63.158 0.00 0.00 0.00 3.50
1219 1464 5.008415 GGTACCGATCTAACTTCTCGATGAA 59.992 44.000 0.00 0.00 34.41 2.57
1231 1476 0.754217 AGCGCCAGGTACCGATCTAA 60.754 55.000 2.29 0.00 0.00 2.10
1233 1478 2.442272 AGCGCCAGGTACCGATCT 60.442 61.111 2.29 0.00 0.00 2.75
1310 1555 5.297776 CACAAAGAAGAAGAAGAAGGCTCAA 59.702 40.000 0.00 0.00 0.00 3.02
2106 2885 4.083324 TCAGTTGAAGAATTTAGCTTGCCG 60.083 41.667 0.00 0.00 0.00 5.69
2225 3004 3.952508 TTCCGCTCTGCCTTGCCA 61.953 61.111 0.00 0.00 0.00 4.92
2289 3068 0.466963 TGCGCTCACCATCTGATGAT 59.533 50.000 18.92 0.00 0.00 2.45
2332 3111 7.611855 CCCTAAAATACATCTGGAACTGAAGTT 59.388 37.037 0.00 0.00 38.93 2.66
2405 3184 4.255510 ACAATAGGCAAATCCCACATCT 57.744 40.909 0.00 0.00 34.51 2.90
2423 3202 5.321959 TGTGAAGATTGAAGTTGCAACAA 57.678 34.783 30.11 16.86 0.00 2.83
2696 3475 5.926542 TGAAATTACAGAGTTTCTCCACTCG 59.073 40.000 0.00 0.00 46.85 4.18
2796 3576 1.134818 ACGTTTCAGGAGCGCATATGA 60.135 47.619 11.47 7.32 0.00 2.15
2857 3637 2.691409 GGCAACTATGTGCACCTCTA 57.309 50.000 15.69 2.57 46.81 2.43
3026 3808 9.310716 GTCTCCGTGCTACTAATTAACTATTTT 57.689 33.333 0.00 0.00 0.00 1.82
3029 3814 7.255520 CCAGTCTCCGTGCTACTAATTAACTAT 60.256 40.741 0.00 0.00 0.00 2.12
3046 3831 8.979574 GTTGACTAAATAATAATCCAGTCTCCG 58.020 37.037 0.00 0.00 34.78 4.63
3187 3974 2.258109 GTTCTCCACCTTCTGGTACCT 58.742 52.381 14.36 0.00 46.60 3.08
3314 4104 5.104776 AGCATCCAAAGTAACTGCAGATCTA 60.105 40.000 23.35 5.77 35.32 1.98
3445 4235 2.330393 GATACTCTGCGGCGCGTA 59.670 61.111 28.09 22.35 0.00 4.42
3574 4386 1.247567 AAGTCCCAAAGCCAACATCG 58.752 50.000 0.00 0.00 0.00 3.84
3638 4450 7.027161 CCAAAATAACATAGCCAGTAACACAC 58.973 38.462 0.00 0.00 0.00 3.82
4123 5124 4.879197 CACATAGGATCTGATGTGGCTA 57.121 45.455 22.59 3.87 46.03 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.