Multiple sequence alignment - TraesCS4B01G015000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G015000 chr4B 100.000 5010 0 0 1 5010 10614260 10609251 0.000000e+00 9252.0
1 TraesCS4B01G015000 chr4A 86.602 2060 140 58 2989 4974 597669988 597671985 0.000000e+00 2150.0
2 TraesCS4B01G015000 chr4A 88.897 1324 103 16 951 2250 597668118 597669421 0.000000e+00 1591.0
3 TraesCS4B01G015000 chr4A 85.540 657 76 10 2463 3111 597669304 597669949 0.000000e+00 669.0
4 TraesCS4B01G015000 chr4A 84.337 415 43 9 2 397 597665534 597665945 2.190000e-103 387.0
5 TraesCS4B01G015000 chr4A 88.584 219 19 2 2254 2467 597669463 597669680 1.380000e-65 261.0
6 TraesCS4B01G015000 chr4A 87.821 156 14 3 3048 3198 597669819 597669974 1.430000e-40 178.0
7 TraesCS4B01G015000 chr4D 86.442 1925 143 69 3048 4909 6045544 6043675 0.000000e+00 2001.0
8 TraesCS4B01G015000 chr4D 87.500 944 60 21 951 1863 6047537 6046621 0.000000e+00 1037.0
9 TraesCS4B01G015000 chr4D 94.231 676 28 6 2439 3111 6046083 6045416 0.000000e+00 1022.0
10 TraesCS4B01G015000 chr4D 84.821 896 96 28 1 869 6048441 6047559 0.000000e+00 865.0
11 TraesCS4B01G015000 chr4D 86.275 357 42 4 1900 2255 6046624 6046274 1.020000e-101 381.0
12 TraesCS4B01G015000 chr4D 90.000 150 9 2 2254 2398 6046237 6046089 6.620000e-44 189.0
13 TraesCS4B01G015000 chr3A 83.922 765 94 12 1429 2182 618247428 618246682 0.000000e+00 704.0
14 TraesCS4B01G015000 chr3A 81.466 464 34 20 1043 1503 618280172 618280586 2.890000e-87 333.0
15 TraesCS4B01G015000 chrUn 85.926 675 67 13 1410 2071 68602554 68603213 0.000000e+00 695.0
16 TraesCS4B01G015000 chrUn 88.306 248 14 5 1042 1287 68601771 68602005 2.950000e-72 283.0
17 TraesCS4B01G015000 chrUn 100.000 28 0 0 1307 1334 68602010 68602037 9.000000e-03 52.8
18 TraesCS4B01G015000 chr5A 84.385 634 73 12 1429 2050 689278449 689279068 2.580000e-167 599.0
19 TraesCS4B01G015000 chr7A 82.112 464 31 20 1043 1503 35723011 35723425 2.870000e-92 350.0
20 TraesCS4B01G015000 chr7A 81.681 464 33 21 1043 1503 662774847 662774433 6.210000e-89 339.0
21 TraesCS4B01G015000 chr7A 86.290 248 17 7 1042 1287 87207145 87206913 2.310000e-63 254.0
22 TraesCS4B01G015000 chr7A 92.661 109 8 0 1963 2071 87206131 87206023 1.870000e-34 158.0
23 TraesCS4B01G015000 chr6A 81.996 461 31 20 1046 1503 92754341 92753930 1.340000e-90 344.0
24 TraesCS4B01G015000 chr6A 81.897 464 31 23 1043 1503 464309136 464309549 4.800000e-90 342.0
25 TraesCS4B01G015000 chr6A 81.681 464 33 20 1043 1503 400175408 400174994 6.210000e-89 339.0
26 TraesCS4B01G015000 chr3B 81.681 464 33 18 1043 1503 570336028 570336442 6.210000e-89 339.0
27 TraesCS4B01G015000 chr2A 88.306 248 14 6 1042 1287 92873423 92873189 2.950000e-72 283.0
28 TraesCS4B01G015000 chr2A 91.743 109 9 0 1963 2071 759628654 759628546 8.690000e-33 152.0
29 TraesCS4B01G015000 chr2B 87.097 248 17 6 1042 1287 733268269 733268035 2.970000e-67 267.0
30 TraesCS4B01G015000 chr2B 92.661 109 8 0 1963 2071 733267253 733267145 1.870000e-34 158.0
31 TraesCS4B01G015000 chr5B 85.887 248 20 7 1042 1287 633446794 633447028 2.990000e-62 250.0
32 TraesCS4B01G015000 chr5B 90.826 109 10 0 1963 2071 633447811 633447919 4.040000e-31 147.0
33 TraesCS4B01G015000 chr7D 92.661 109 8 0 1963 2071 104003501 104003609 1.870000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G015000 chr4B 10609251 10614260 5009 True 9252.000000 9252 100.000000 1 5010 1 chr4B.!!$R1 5009
1 TraesCS4B01G015000 chr4A 597665534 597671985 6451 False 872.666667 2150 86.963500 2 4974 6 chr4A.!!$F1 4972
2 TraesCS4B01G015000 chr4D 6043675 6048441 4766 True 915.833333 2001 88.211500 1 4909 6 chr4D.!!$R1 4908
3 TraesCS4B01G015000 chr3A 618246682 618247428 746 True 704.000000 704 83.922000 1429 2182 1 chr3A.!!$R1 753
4 TraesCS4B01G015000 chrUn 68601771 68603213 1442 False 343.600000 695 91.410667 1042 2071 3 chrUn.!!$F1 1029
5 TraesCS4B01G015000 chr5A 689278449 689279068 619 False 599.000000 599 84.385000 1429 2050 1 chr5A.!!$F1 621
6 TraesCS4B01G015000 chr7A 87206023 87207145 1122 True 206.000000 254 89.475500 1042 2071 2 chr7A.!!$R2 1029
7 TraesCS4B01G015000 chr2B 733267145 733268269 1124 True 212.500000 267 89.879000 1042 2071 2 chr2B.!!$R1 1029

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 1556 0.045623 TCAAGATAGGGGGAGGGCAA 59.954 55.0 0.0 0.0 0.00 4.52 F
1305 3007 0.034477 CCCATACCCTCGGTGCTTTT 60.034 55.0 0.0 0.0 36.19 2.27 F
2832 5562 0.668706 CACTGGGAGAGCAACGACAG 60.669 60.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2454 5184 0.037975 CACACCCAAAAGGATGCTGC 60.038 55.0 0.0 0.0 39.89 5.25 R
3002 5734 0.435008 CGCAAAAGAACCGAGACGAG 59.565 55.0 0.0 0.0 0.00 4.18 R
4162 7101 0.034896 TTTGTCGAGGCTCTTGGGTC 59.965 55.0 13.5 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.406477 GTGATGCTGCATGTTTATATCTCGA 59.594 40.000 21.53 0.00 0.00 4.04
27 28 7.818930 TGATGCTGCATGTTTATATCTCGATAA 59.181 33.333 21.53 0.00 0.00 1.75
31 32 7.201478 GCTGCATGTTTATATCTCGATAACTCC 60.201 40.741 0.00 0.00 0.00 3.85
47 48 4.625607 AACTCCTCCCTAGTTGTTCAAG 57.374 45.455 0.00 0.00 35.87 3.02
72 73 1.798223 GCACTGATGTTGTCACGCTTA 59.202 47.619 0.00 0.00 32.22 3.09
129 135 1.251251 AGGATGTGCTGCTCCAAAAC 58.749 50.000 8.85 0.00 33.75 2.43
139 145 6.208402 TGTGCTGCTCCAAAACTTCATAATTA 59.792 34.615 0.00 0.00 0.00 1.40
140 146 7.090173 GTGCTGCTCCAAAACTTCATAATTAA 58.910 34.615 0.00 0.00 0.00 1.40
165 172 5.421277 TCGGACTAAAAACAAGTTGTGAGA 58.579 37.500 9.79 0.00 0.00 3.27
194 215 6.455360 CCAGTAGTTATGGTTGCATCATTT 57.545 37.500 8.11 0.06 32.85 2.32
206 227 4.707030 TGCATCATTTGTGAGATCAACC 57.293 40.909 0.00 0.00 0.00 3.77
222 243 0.178990 AACCAGAGGGCAAGGTTGTC 60.179 55.000 0.00 0.00 43.60 3.18
241 262 7.012989 AGGTTGTCCAACTGTAACTTCATTTAC 59.987 37.037 9.79 0.00 40.94 2.01
247 268 6.425721 CCAACTGTAACTTCATTTACGAAGGA 59.574 38.462 5.73 0.00 45.54 3.36
249 270 5.930569 ACTGTAACTTCATTTACGAAGGACC 59.069 40.000 5.73 0.00 45.54 4.46
251 272 6.527423 TGTAACTTCATTTACGAAGGACCTT 58.473 36.000 6.40 6.40 45.54 3.50
252 273 6.993902 TGTAACTTCATTTACGAAGGACCTTT 59.006 34.615 8.49 0.00 45.54 3.11
304 326 8.962111 GCTAAGTTTTCAAGTTCTTTTGATCAG 58.038 33.333 0.00 0.00 36.97 2.90
307 329 6.607198 AGTTTTCAAGTTCTTTTGATCAGGGA 59.393 34.615 0.00 0.00 36.97 4.20
308 330 6.391227 TTTCAAGTTCTTTTGATCAGGGAC 57.609 37.500 0.00 0.00 36.97 4.46
309 331 4.065088 TCAAGTTCTTTTGATCAGGGACG 58.935 43.478 0.00 0.00 32.39 4.79
331 353 1.791204 CATCTGCGGTTGATCGATCTG 59.209 52.381 25.02 13.53 0.00 2.90
359 381 6.558394 TGATCCAATCTGTATCCCACTTCATA 59.442 38.462 0.00 0.00 0.00 2.15
431 1507 0.174845 TAAAGTGACATAGCCGCGCT 59.825 50.000 5.56 4.15 43.41 5.92
451 1527 3.628017 CTCGGTTTTGCTTCGTTTCAAT 58.372 40.909 0.00 0.00 0.00 2.57
476 1552 4.846367 TCACATTATCAAGATAGGGGGAGG 59.154 45.833 0.00 0.00 0.00 4.30
477 1553 4.018960 CACATTATCAAGATAGGGGGAGGG 60.019 50.000 0.00 0.00 0.00 4.30
478 1554 2.344093 TATCAAGATAGGGGGAGGGC 57.656 55.000 0.00 0.00 0.00 5.19
480 1556 0.045623 TCAAGATAGGGGGAGGGCAA 59.954 55.000 0.00 0.00 0.00 4.52
481 1557 0.475906 CAAGATAGGGGGAGGGCAAG 59.524 60.000 0.00 0.00 0.00 4.01
491 1567 2.574824 GGGGAGGGCAAGAAACTAGTAA 59.425 50.000 0.00 0.00 0.00 2.24
511 1587 2.889170 TGTAGCCATTGTAAGCCCAA 57.111 45.000 0.00 0.00 0.00 4.12
513 1589 3.287222 TGTAGCCATTGTAAGCCCAATC 58.713 45.455 0.00 0.00 32.81 2.67
547 1626 1.160329 CCGAATTAGGCGAGCCCAAG 61.160 60.000 10.95 0.00 36.58 3.61
556 1635 1.365368 GCGAGCCCAAGAGCTTTCTC 61.365 60.000 0.00 0.00 45.15 2.87
558 1637 0.247736 GAGCCCAAGAGCTTTCTCGA 59.752 55.000 0.00 0.00 45.15 4.04
569 1648 1.339151 GCTTTCTCGACCCTTCACCAT 60.339 52.381 0.00 0.00 0.00 3.55
570 1649 2.093658 GCTTTCTCGACCCTTCACCATA 60.094 50.000 0.00 0.00 0.00 2.74
573 1652 1.412710 TCTCGACCCTTCACCATATGC 59.587 52.381 0.00 0.00 0.00 3.14
574 1653 0.104120 TCGACCCTTCACCATATGCG 59.896 55.000 0.00 0.00 0.00 4.73
690 2374 3.011119 GCACGTGGTTAATTGGGTCATA 58.989 45.455 18.88 0.00 0.00 2.15
702 2386 3.487576 GGTCATACCCGGCAAATGA 57.512 52.632 0.00 1.25 30.04 2.57
704 2388 2.669868 GGTCATACCCGGCAAATGACG 61.670 57.143 24.06 0.62 46.75 4.35
747 2431 4.314440 GAGGCTGGGCACGTGTGA 62.314 66.667 18.38 0.08 0.00 3.58
749 2433 4.927782 GGCTGGGCACGTGTGACA 62.928 66.667 18.38 12.48 41.42 3.58
755 2439 1.960763 GGCACGTGTGACAGCATGA 60.961 57.895 18.38 0.00 39.69 3.07
758 2442 1.150827 CACGTGTGACAGCATGACAT 58.849 50.000 7.58 0.00 43.59 3.06
765 2449 3.268330 GTGACAGCATGACATGACTCAT 58.732 45.455 19.76 6.31 43.59 2.90
766 2450 3.688185 GTGACAGCATGACATGACTCATT 59.312 43.478 19.76 3.02 43.59 2.57
767 2451 4.155462 GTGACAGCATGACATGACTCATTT 59.845 41.667 19.76 0.86 43.59 2.32
843 2527 3.474942 GGGCCGTCCCGTTTAATTA 57.525 52.632 0.00 0.00 43.94 1.40
849 2533 4.122046 GCCGTCCCGTTTAATTATAGTGT 58.878 43.478 0.00 0.00 0.00 3.55
946 2630 2.589724 GGGCCGGGCACGTATAAC 60.590 66.667 30.95 5.52 38.78 1.89
947 2631 2.589724 GGCCGGGCACGTATAACC 60.590 66.667 25.33 0.00 38.78 2.85
948 2632 2.589724 GCCGGGCACGTATAACCC 60.590 66.667 15.62 5.30 40.51 4.11
949 2633 2.901813 CCGGGCACGTATAACCCA 59.098 61.111 7.97 0.00 44.49 4.51
950 2634 1.227438 CCGGGCACGTATAACCCAG 60.227 63.158 7.97 7.55 44.49 4.45
951 2635 1.227438 CGGGCACGTATAACCCAGG 60.227 63.158 0.00 0.00 44.49 4.45
952 2636 1.525306 GGGCACGTATAACCCAGGC 60.525 63.158 9.57 0.00 43.64 4.85
953 2637 1.525306 GGCACGTATAACCCAGGCC 60.525 63.158 0.00 0.00 0.00 5.19
954 2638 1.885850 GCACGTATAACCCAGGCCG 60.886 63.158 0.00 0.00 0.00 6.13
955 2639 1.227438 CACGTATAACCCAGGCCGG 60.227 63.158 0.00 0.00 0.00 6.13
981 2665 4.966787 GTGCAGGTCCGGCCCAAA 62.967 66.667 3.37 0.00 38.26 3.28
1162 2854 0.809241 GCTTGCTGATGGAGGTCTCG 60.809 60.000 0.00 0.00 0.00 4.04
1250 2942 4.070552 GACGGCTGCTCCCTTCGT 62.071 66.667 0.00 0.00 36.74 3.85
1252 2944 3.764466 CGGCTGCTCCCTTCGTCT 61.764 66.667 0.00 0.00 0.00 4.18
1304 3006 1.607612 CCCATACCCTCGGTGCTTT 59.392 57.895 0.00 0.00 36.19 3.51
1305 3007 0.034477 CCCATACCCTCGGTGCTTTT 60.034 55.000 0.00 0.00 36.19 2.27
1360 3062 2.493030 CGTGTAGGTGTAGGCCCG 59.507 66.667 0.00 0.00 0.00 6.13
1426 3569 2.774234 AGGTGGATGGAATTCTGACGAT 59.226 45.455 5.23 0.00 0.00 3.73
1427 3570 3.200825 AGGTGGATGGAATTCTGACGATT 59.799 43.478 5.23 0.00 0.00 3.34
1451 3594 1.200948 GGTGCATTCTGTTGAGCTTCC 59.799 52.381 0.00 0.00 0.00 3.46
1491 3635 6.656693 CACTGATTTCTTAGTGGAATGGAAGT 59.343 38.462 0.00 0.00 40.38 3.01
1511 3659 3.138468 AGTTGAAGAAGGTAGGGCTTGTT 59.862 43.478 0.00 0.00 0.00 2.83
1522 3670 1.635487 AGGGCTTGTTTGCTCCATAGA 59.365 47.619 0.00 0.00 33.00 1.98
1580 3735 4.220602 GGTATTCTGAATTTGTGGCCTGTT 59.779 41.667 8.38 0.00 0.00 3.16
1625 3780 2.369629 GCGCGACTGCACGAGTAAA 61.370 57.895 12.10 0.00 42.97 2.01
1813 4324 7.202016 ACGAAATGATCTTTGTATGTGTGTT 57.798 32.000 0.00 0.00 0.00 3.32
1827 4338 4.002906 TGTGTGTTGACAGGATAGAACC 57.997 45.455 0.00 0.00 30.74 3.62
1867 4378 6.908825 TGTTTTGATACCAAGTTATGAGTGC 58.091 36.000 0.00 0.00 33.23 4.40
1870 4381 5.079689 TGATACCAAGTTATGAGTGCGAA 57.920 39.130 0.00 0.00 0.00 4.70
1871 4382 5.670485 TGATACCAAGTTATGAGTGCGAAT 58.330 37.500 0.00 0.00 0.00 3.34
1875 4386 8.677148 ATACCAAGTTATGAGTGCGAATTATT 57.323 30.769 0.00 0.00 0.00 1.40
1879 4390 8.394877 CCAAGTTATGAGTGCGAATTATTTGTA 58.605 33.333 0.00 0.00 0.00 2.41
1880 4391 9.210426 CAAGTTATGAGTGCGAATTATTTGTAC 57.790 33.333 5.44 5.44 0.00 2.90
1881 4392 8.718102 AGTTATGAGTGCGAATTATTTGTACT 57.282 30.769 14.30 14.30 41.85 2.73
1883 4394 8.600625 GTTATGAGTGCGAATTATTTGTACTGA 58.399 33.333 18.28 11.87 39.67 3.41
1921 4432 5.007626 GCTATATTTGCTTGTCGATTGGTCA 59.992 40.000 0.00 0.00 0.00 4.02
1936 4447 5.858475 GATTGGTCAAGTGTTGTCTAATCG 58.142 41.667 7.04 0.00 37.12 3.34
1937 4448 4.594123 TGGTCAAGTGTTGTCTAATCGA 57.406 40.909 0.00 0.00 0.00 3.59
1938 4449 5.147330 TGGTCAAGTGTTGTCTAATCGAT 57.853 39.130 0.00 0.00 0.00 3.59
1942 4453 6.401153 GGTCAAGTGTTGTCTAATCGATTGAC 60.401 42.308 20.87 22.10 41.88 3.18
1944 4455 6.704050 TCAAGTGTTGTCTAATCGATTGACAA 59.296 34.615 30.64 30.64 44.96 3.18
1951 4462 4.387862 GTCTAATCGATTGACAACAACCGT 59.612 41.667 20.87 0.00 42.87 4.83
1952 4463 3.536158 AATCGATTGACAACAACCGTG 57.464 42.857 10.50 0.00 42.87 4.94
1953 4464 2.226602 TCGATTGACAACAACCGTGA 57.773 45.000 0.00 0.00 42.87 4.35
1959 4590 2.020720 TGACAACAACCGTGAAGCATT 58.979 42.857 0.00 0.00 0.00 3.56
1961 4648 7.172943 ATTGACAACAACCGTGAAGCATTCA 62.173 40.000 0.00 0.00 45.34 2.57
1976 4663 5.904362 AGCATTCATCTGTTCCCTTTAAC 57.096 39.130 0.00 0.00 0.00 2.01
2055 4742 5.070580 AGGGTGATAAGTAGGTTGTAGCATC 59.929 44.000 0.00 0.00 0.00 3.91
2082 4769 3.137544 ACAGGACAATGTGGGTGAGTTAA 59.862 43.478 0.00 0.00 30.46 2.01
2092 4779 2.143925 GGGTGAGTTAACAGCACAGAC 58.856 52.381 24.01 14.46 39.61 3.51
2206 4893 4.764823 CACCTAGCCAATTTCCTGTTTACA 59.235 41.667 0.00 0.00 0.00 2.41
2250 4937 7.524717 AACAAGTTTATCCAGCATGTAAGTT 57.475 32.000 0.00 0.00 0.00 2.66
2296 5026 9.539194 TTCTCAGGATCTAATCTATTATCTGCA 57.461 33.333 0.00 0.00 0.00 4.41
2397 5127 5.071250 TGCTTAACTTCTTGTCTTCACCCTA 59.929 40.000 0.00 0.00 0.00 3.53
2398 5128 5.408909 GCTTAACTTCTTGTCTTCACCCTAC 59.591 44.000 0.00 0.00 0.00 3.18
2399 5129 4.353383 AACTTCTTGTCTTCACCCTACC 57.647 45.455 0.00 0.00 0.00 3.18
2400 5130 3.588569 ACTTCTTGTCTTCACCCTACCT 58.411 45.455 0.00 0.00 0.00 3.08
2401 5131 4.748701 ACTTCTTGTCTTCACCCTACCTA 58.251 43.478 0.00 0.00 0.00 3.08
2402 5132 4.773149 ACTTCTTGTCTTCACCCTACCTAG 59.227 45.833 0.00 0.00 0.00 3.02
2403 5133 4.669866 TCTTGTCTTCACCCTACCTAGA 57.330 45.455 0.00 0.00 0.00 2.43
2404 5134 5.006896 TCTTGTCTTCACCCTACCTAGAA 57.993 43.478 0.00 0.00 0.00 2.10
2405 5135 4.771054 TCTTGTCTTCACCCTACCTAGAAC 59.229 45.833 0.00 0.00 0.00 3.01
2406 5136 4.399483 TGTCTTCACCCTACCTAGAACT 57.601 45.455 0.00 0.00 0.00 3.01
2407 5137 4.748701 TGTCTTCACCCTACCTAGAACTT 58.251 43.478 0.00 0.00 0.00 2.66
2408 5138 4.527038 TGTCTTCACCCTACCTAGAACTTG 59.473 45.833 0.00 0.00 0.00 3.16
2409 5139 4.527427 GTCTTCACCCTACCTAGAACTTGT 59.473 45.833 0.00 0.00 0.00 3.16
2410 5140 5.011840 GTCTTCACCCTACCTAGAACTTGTT 59.988 44.000 0.00 0.00 0.00 2.83
2411 5141 6.210185 GTCTTCACCCTACCTAGAACTTGTTA 59.790 42.308 0.00 0.00 0.00 2.41
2412 5142 5.990120 TCACCCTACCTAGAACTTGTTAC 57.010 43.478 0.00 0.00 0.00 2.50
2413 5143 4.774200 TCACCCTACCTAGAACTTGTTACC 59.226 45.833 0.00 0.00 0.00 2.85
2414 5144 4.776308 CACCCTACCTAGAACTTGTTACCT 59.224 45.833 0.00 0.00 0.00 3.08
2415 5145 5.954150 CACCCTACCTAGAACTTGTTACCTA 59.046 44.000 0.00 0.00 0.00 3.08
2416 5146 6.610425 CACCCTACCTAGAACTTGTTACCTAT 59.390 42.308 0.00 0.00 0.00 2.57
2417 5147 7.781693 CACCCTACCTAGAACTTGTTACCTATA 59.218 40.741 0.00 0.00 0.00 1.31
2418 5148 8.346828 ACCCTACCTAGAACTTGTTACCTATAA 58.653 37.037 0.00 0.00 0.00 0.98
2419 5149 9.377238 CCCTACCTAGAACTTGTTACCTATAAT 57.623 37.037 0.00 0.00 0.00 1.28
2424 5154 9.694137 CCTAGAACTTGTTACCTATAATAGTGC 57.306 37.037 0.00 0.00 0.00 4.40
2426 5156 8.943909 AGAACTTGTTACCTATAATAGTGCAC 57.056 34.615 9.40 9.40 0.00 4.57
2427 5157 8.537016 AGAACTTGTTACCTATAATAGTGCACA 58.463 33.333 21.04 5.47 0.00 4.57
2428 5158 8.488651 AACTTGTTACCTATAATAGTGCACAC 57.511 34.615 21.04 4.05 0.00 3.82
2429 5159 7.848128 ACTTGTTACCTATAATAGTGCACACT 58.152 34.615 21.04 8.57 45.02 3.55
2430 5160 7.764443 ACTTGTTACCTATAATAGTGCACACTG 59.236 37.037 21.04 1.55 42.52 3.66
2431 5161 7.412853 TGTTACCTATAATAGTGCACACTGA 57.587 36.000 21.04 1.42 42.52 3.41
2434 5164 9.158233 GTTACCTATAATAGTGCACACTGAAAA 57.842 33.333 21.04 0.00 42.52 2.29
2437 5167 7.829211 ACCTATAATAGTGCACACTGAAAACAT 59.171 33.333 21.04 0.00 42.52 2.71
2454 5184 2.233271 ACATTGGGAGAGCAACAACAG 58.767 47.619 0.00 0.00 0.00 3.16
2529 5259 5.366768 CCATTTCCACCTAGTTGATCTCCTA 59.633 44.000 0.00 0.00 0.00 2.94
2532 5262 6.732896 TTCCACCTAGTTGATCTCCTATTC 57.267 41.667 0.00 0.00 0.00 1.75
2576 5306 1.997606 GTGTGTCCGGCATGTAAGTAC 59.002 52.381 0.00 0.00 0.00 2.73
2585 5315 4.745125 CCGGCATGTAAGTACTATTCAGTG 59.255 45.833 0.00 0.00 36.14 3.66
2588 5318 6.460537 CGGCATGTAAGTACTATTCAGTGGTA 60.461 42.308 0.00 0.00 36.14 3.25
2591 5321 7.224167 GCATGTAAGTACTATTCAGTGGTAACC 59.776 40.741 0.00 0.00 36.14 2.85
2592 5322 7.779754 TGTAAGTACTATTCAGTGGTAACCA 57.220 36.000 0.00 0.00 36.14 3.67
2623 5353 4.762765 ACATTAATTGTTGGTGCGGAAGTA 59.237 37.500 0.00 0.00 33.74 2.24
2624 5354 5.417580 ACATTAATTGTTGGTGCGGAAGTAT 59.582 36.000 0.00 0.00 33.74 2.12
2705 5435 4.099266 AGCCAAGCTGTTTTTGTTATGTCA 59.901 37.500 0.00 0.00 37.57 3.58
2706 5436 4.808364 GCCAAGCTGTTTTTGTTATGTCAA 59.192 37.500 0.00 0.00 0.00 3.18
2720 5450 5.189736 TGTTATGTCAAGCTAATCTGGACCT 59.810 40.000 0.00 0.00 43.74 3.85
2721 5451 3.616956 TGTCAAGCTAATCTGGACCTG 57.383 47.619 0.00 0.00 43.74 4.00
2828 5558 1.264288 GAAAACACTGGGAGAGCAACG 59.736 52.381 0.00 0.00 0.00 4.10
2832 5562 0.668706 CACTGGGAGAGCAACGACAG 60.669 60.000 0.00 0.00 0.00 3.51
2856 5586 7.444792 CAGCAGCATCCTTTTCTAGATAATTCT 59.555 37.037 0.00 0.00 35.90 2.40
2863 5593 8.855804 TCCTTTTCTAGATAATTCTACCCAGT 57.144 34.615 0.00 0.00 33.17 4.00
2874 5604 4.513406 TTCTACCCAGTTCTGTTGGTTT 57.487 40.909 6.18 0.00 33.73 3.27
2903 5635 2.030027 TGAGTGTCCTCCATTCCAGT 57.970 50.000 0.00 0.00 36.86 4.00
2952 5684 4.264352 TGGAGCCAGGAAGTTGGATTAATT 60.264 41.667 0.00 0.00 40.87 1.40
2961 5693 5.649831 GGAAGTTGGATTAATTGCTCTCAGT 59.350 40.000 0.00 0.00 0.00 3.41
2981 5713 4.656112 CAGTCTCTTACTTCCATATGGGGT 59.344 45.833 21.78 20.52 35.76 4.95
3002 5734 6.294564 GGGGTTTGATTTTCCTCTTACTTCAC 60.295 42.308 0.00 0.00 0.00 3.18
3016 5748 1.955080 ACTTCACTCGTCTCGGTTCTT 59.045 47.619 0.00 0.00 0.00 2.52
3060 5792 3.068024 GCCAAGTGTGTTGATTTTCCTCA 59.932 43.478 0.00 0.00 0.00 3.86
3108 5840 2.034878 TGATGTGGCCTGACTAGCTAG 58.965 52.381 19.44 19.44 0.00 3.42
3109 5841 2.035632 GATGTGGCCTGACTAGCTAGT 58.964 52.381 26.35 26.35 39.71 2.57
3110 5842 1.186200 TGTGGCCTGACTAGCTAGTG 58.814 55.000 30.70 17.18 36.50 2.74
3111 5843 1.187087 GTGGCCTGACTAGCTAGTGT 58.813 55.000 30.70 8.37 36.50 3.55
3112 5844 1.134965 GTGGCCTGACTAGCTAGTGTG 60.135 57.143 30.70 20.48 36.50 3.82
3113 5845 1.187087 GGCCTGACTAGCTAGTGTGT 58.813 55.000 30.70 7.13 36.50 3.72
3114 5846 1.550976 GGCCTGACTAGCTAGTGTGTT 59.449 52.381 30.70 5.76 36.50 3.32
3115 5847 2.611518 GCCTGACTAGCTAGTGTGTTG 58.388 52.381 30.70 14.50 36.50 3.33
3116 5848 2.028930 GCCTGACTAGCTAGTGTGTTGT 60.029 50.000 30.70 5.09 36.50 3.32
3127 6020 6.354130 AGCTAGTGTGTTGTTTTTCCTCTTA 58.646 36.000 0.00 0.00 0.00 2.10
3128 6021 6.260271 AGCTAGTGTGTTGTTTTTCCTCTTAC 59.740 38.462 0.00 0.00 0.00 2.34
3135 6028 7.175990 TGTGTTGTTTTTCCTCTTACTTTGTCT 59.824 33.333 0.00 0.00 0.00 3.41
3155 6048 1.866601 TCTGTTCTGTTGTGTGATGCG 59.133 47.619 0.00 0.00 0.00 4.73
3157 6050 0.944386 GTTCTGTTGTGTGATGCGGT 59.056 50.000 0.00 0.00 0.00 5.68
3177 6070 4.142359 CGGTCTGACTAGCTAAGTGACATT 60.142 45.833 7.85 0.00 39.07 2.71
3191 6084 9.534565 GCTAAGTGACATTCATTTGATAGTAGA 57.465 33.333 0.00 0.00 29.04 2.59
3238 6131 4.492494 TTTCTAGCCAATGCAGATCAGA 57.508 40.909 0.00 0.00 41.13 3.27
3325 6218 4.953940 AGCTGTTCCAGAGGAGAATATC 57.046 45.455 0.00 0.00 32.44 1.63
3359 6252 5.255397 TGGCCTAGATTTGGAAAAGAAGA 57.745 39.130 3.32 0.00 0.00 2.87
3361 6254 6.256053 TGGCCTAGATTTGGAAAAGAAGAAT 58.744 36.000 3.32 0.00 0.00 2.40
3460 6353 3.622612 TGTACGTCGACTCGATAATGGAA 59.377 43.478 14.70 0.00 38.42 3.53
3504 6397 3.107601 TCAGATGCCTAGGTAAGCAAGT 58.892 45.455 11.31 0.00 43.36 3.16
3511 6404 3.437049 GCCTAGGTAAGCAAGTTTGACAG 59.563 47.826 11.31 0.00 0.00 3.51
3524 6417 4.260170 AGTTTGACAGCCATCTCTGATTC 58.740 43.478 0.00 0.00 37.51 2.52
3534 6427 3.370209 CCATCTCTGATTCCTGCAGTGAA 60.370 47.826 13.81 15.53 38.76 3.18
3536 6429 2.027745 TCTCTGATTCCTGCAGTGAACC 60.028 50.000 13.81 7.61 34.19 3.62
3551 6444 5.086058 CAGTGAACCGTGTGCATTTTATAC 58.914 41.667 0.00 0.00 0.00 1.47
3557 6450 0.378962 TGTGCATTTTATACGCCGCC 59.621 50.000 0.00 0.00 0.00 6.13
3584 6478 5.076182 TGGATGATACATGGTTTGTTGTGT 58.924 37.500 0.00 0.00 39.87 3.72
3600 6494 0.449388 GTGTGATTGCTGTAGGCTGC 59.551 55.000 0.00 0.00 42.39 5.25
3660 6554 1.531149 CGTGGACACACCTGAATTGTC 59.469 52.381 3.12 0.00 44.86 3.18
3729 6630 0.179121 TGGTGTACGTCCATCATCGC 60.179 55.000 0.00 0.00 0.00 4.58
3737 6639 2.063979 TCCATCATCGCCGGGAACT 61.064 57.895 2.18 0.00 0.00 3.01
3743 6645 1.691976 TCATCGCCGGGAACTATCATT 59.308 47.619 2.18 0.00 0.00 2.57
3745 6647 2.702592 TCGCCGGGAACTATCATTTT 57.297 45.000 2.18 0.00 0.00 1.82
3746 6648 2.993937 TCGCCGGGAACTATCATTTTT 58.006 42.857 2.18 0.00 0.00 1.94
3788 6717 9.478019 CATTTTACTGACGATTCATAGTTGAAC 57.522 33.333 0.00 0.00 44.36 3.18
3792 6721 5.516696 ACTGACGATTCATAGTTGAACGATG 59.483 40.000 11.50 11.50 44.36 3.84
3803 6732 3.434641 AGTTGAACGATGTTCAGAGCATG 59.565 43.478 4.18 0.47 0.00 4.06
3871 6800 6.388278 GGTGTTGTACCTTGAGTCTACTTAG 58.612 44.000 0.00 0.00 46.51 2.18
3874 6803 7.594386 GTGTTGTACCTTGAGTCTACTTAGTTC 59.406 40.741 0.00 0.00 0.00 3.01
3875 6804 7.286087 TGTTGTACCTTGAGTCTACTTAGTTCA 59.714 37.037 0.00 0.00 0.00 3.18
3877 6806 7.229308 TGTACCTTGAGTCTACTTAGTTCAGA 58.771 38.462 0.00 0.00 0.00 3.27
3878 6807 6.827586 ACCTTGAGTCTACTTAGTTCAGAG 57.172 41.667 0.00 0.00 0.00 3.35
3889 6823 2.071688 AGTTCAGAGCGTGTGACATC 57.928 50.000 0.00 0.00 0.00 3.06
3962 6896 0.587768 CTGTTTGACATGCGTGCTCA 59.412 50.000 5.64 6.47 0.00 4.26
3964 6898 1.197492 TGTTTGACATGCGTGCTCATC 59.803 47.619 5.64 0.00 0.00 2.92
3983 6921 4.450080 TCATCGATGCATATGCTGTCTTTC 59.550 41.667 27.13 13.19 42.66 2.62
4000 6938 6.675026 TGTCTTTCTTTTGCTGAATCAGATG 58.325 36.000 15.38 0.00 32.44 2.90
4104 7042 4.664150 TTGTGCAGATATCGGTACATCA 57.336 40.909 22.84 10.11 36.70 3.07
4115 7054 3.028130 TCGGTACATCACATTGCCTAGA 58.972 45.455 0.00 0.00 0.00 2.43
4118 7057 4.212004 CGGTACATCACATTGCCTAGAATG 59.788 45.833 0.00 3.27 38.97 2.67
4119 7058 5.368145 GGTACATCACATTGCCTAGAATGA 58.632 41.667 10.31 0.00 36.89 2.57
4120 7059 5.822519 GGTACATCACATTGCCTAGAATGAA 59.177 40.000 10.31 0.69 36.89 2.57
4121 7060 5.824904 ACATCACATTGCCTAGAATGAAC 57.175 39.130 10.31 0.00 36.89 3.18
4122 7061 4.333649 ACATCACATTGCCTAGAATGAACG 59.666 41.667 10.31 0.00 36.89 3.95
4126 7065 3.689649 ACATTGCCTAGAATGAACGGAAC 59.310 43.478 10.31 0.00 36.89 3.62
4128 7067 6.255844 CATTGCCTAGAATGAACGGAACGG 62.256 50.000 0.00 0.00 45.69 4.44
4162 7101 3.669122 CGAAGTCGACAAGTTAGAACCAG 59.331 47.826 19.50 0.00 43.02 4.00
4163 7102 4.556104 CGAAGTCGACAAGTTAGAACCAGA 60.556 45.833 19.50 0.00 43.02 3.86
4165 7104 3.005578 AGTCGACAAGTTAGAACCAGACC 59.994 47.826 19.50 0.00 0.00 3.85
4171 7110 4.202367 ACAAGTTAGAACCAGACCCAAGAG 60.202 45.833 0.00 0.00 0.00 2.85
4185 7132 3.244770 ACCCAAGAGCCTCGACAAATTAA 60.245 43.478 0.00 0.00 0.00 1.40
4197 7144 7.271438 GCCTCGACAAATTAAAATCTCAAGAAC 59.729 37.037 0.00 0.00 0.00 3.01
4278 7232 2.014594 GCCGGTTCAAAGATAGGCG 58.985 57.895 1.90 0.00 34.94 5.52
4280 7235 1.006832 CCGGTTCAAAGATAGGCGTG 58.993 55.000 0.00 0.00 0.00 5.34
4319 7277 0.242286 ATAGCAGATCGAATCGCGCT 59.758 50.000 5.56 11.82 42.72 5.92
4343 7301 7.383156 TTGGTCCTAAATAATACCTACCCTG 57.617 40.000 0.00 0.00 32.99 4.45
4347 7305 8.370940 GGTCCTAAATAATACCTACCCTGTTAC 58.629 40.741 0.00 0.00 0.00 2.50
4358 7323 4.162320 CCTACCCTGTTACACACTCATCAT 59.838 45.833 0.00 0.00 0.00 2.45
4359 7324 4.207891 ACCCTGTTACACACTCATCATC 57.792 45.455 0.00 0.00 0.00 2.92
4360 7325 3.582647 ACCCTGTTACACACTCATCATCA 59.417 43.478 0.00 0.00 0.00 3.07
4366 7331 7.368480 TGTTACACACTCATCATCAATCAAG 57.632 36.000 0.00 0.00 0.00 3.02
4374 7339 6.527023 CACTCATCATCAATCAAGCAAGAAAC 59.473 38.462 0.00 0.00 0.00 2.78
4407 7372 1.640670 ACCCACACCCAATATGCTTCT 59.359 47.619 0.00 0.00 0.00 2.85
4424 7389 0.907486 TCTCTTGAGGCATGGACCAG 59.093 55.000 0.00 0.00 0.00 4.00
4430 7395 4.512914 GGCATGGACCAGCCCCTC 62.513 72.222 19.01 0.72 45.18 4.30
4438 7403 2.677875 CCAGCCCCTCCTGCAAAC 60.678 66.667 0.00 0.00 0.00 2.93
4613 7583 1.303309 CAAGCCATGTCCGATCCTTC 58.697 55.000 0.00 0.00 0.00 3.46
4614 7584 1.134280 CAAGCCATGTCCGATCCTTCT 60.134 52.381 0.00 0.00 0.00 2.85
4654 7624 0.996762 TCTCCTCCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
4655 7625 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
4659 7633 0.253868 TCCTCCTCCTCCTCCTCTCA 60.254 60.000 0.00 0.00 0.00 3.27
4722 7696 0.322816 GCATCACTCACCACCACCAT 60.323 55.000 0.00 0.00 0.00 3.55
4729 7703 0.327924 TCACCACCACCATCACCATC 59.672 55.000 0.00 0.00 0.00 3.51
4730 7704 1.026182 CACCACCACCATCACCATCG 61.026 60.000 0.00 0.00 0.00 3.84
4731 7705 1.198094 ACCACCACCATCACCATCGA 61.198 55.000 0.00 0.00 0.00 3.59
4732 7706 0.181114 CCACCACCATCACCATCGAT 59.819 55.000 0.00 0.00 0.00 3.59
4842 7820 3.834799 CGAGGAGTACACCCCCGC 61.835 72.222 5.63 0.00 0.00 6.13
4904 7882 1.074775 ATCGTCCCAGGCAAGCAAA 59.925 52.632 0.00 0.00 0.00 3.68
4906 7884 2.919494 CGTCCCAGGCAAGCAAACC 61.919 63.158 0.00 0.00 0.00 3.27
4907 7885 1.832167 GTCCCAGGCAAGCAAACCA 60.832 57.895 0.00 0.00 0.00 3.67
4908 7886 1.155859 TCCCAGGCAAGCAAACCAT 59.844 52.632 0.00 0.00 0.00 3.55
4909 7887 0.899717 TCCCAGGCAAGCAAACCATC 60.900 55.000 0.00 0.00 0.00 3.51
4910 7888 1.593265 CCAGGCAAGCAAACCATCC 59.407 57.895 0.00 0.00 0.00 3.51
4911 7889 1.186917 CCAGGCAAGCAAACCATCCA 61.187 55.000 0.00 0.00 0.00 3.41
4915 7893 1.079875 GCAAGCAAACCATCCATGCG 61.080 55.000 0.00 0.00 44.60 4.73
4916 7894 0.458889 CAAGCAAACCATCCATGCGG 60.459 55.000 0.00 0.00 44.60 5.69
4923 7901 2.475466 CCATCCATGCGGCTCACAC 61.475 63.158 0.00 0.00 0.00 3.82
4925 7903 2.970379 ATCCATGCGGCTCACACCA 61.970 57.895 0.00 0.00 0.00 4.17
4962 7940 3.444818 AACAATGGCGGGGGTGTGT 62.445 57.895 0.00 0.00 0.00 3.72
4963 7941 3.372730 CAATGGCGGGGGTGTGTG 61.373 66.667 0.00 0.00 0.00 3.82
4964 7942 3.575247 AATGGCGGGGGTGTGTGA 61.575 61.111 0.00 0.00 0.00 3.58
4965 7943 2.917897 AATGGCGGGGGTGTGTGAT 61.918 57.895 0.00 0.00 0.00 3.06
4969 7947 3.646715 CGGGGGTGTGTGATGGGT 61.647 66.667 0.00 0.00 0.00 4.51
4970 7948 2.035626 GGGGGTGTGTGATGGGTG 59.964 66.667 0.00 0.00 0.00 4.61
4971 7949 2.840753 GGGGGTGTGTGATGGGTGT 61.841 63.158 0.00 0.00 0.00 4.16
4973 7951 1.603455 GGGTGTGTGATGGGTGTGG 60.603 63.158 0.00 0.00 0.00 4.17
4974 7952 2.268076 GGTGTGTGATGGGTGTGGC 61.268 63.158 0.00 0.00 0.00 5.01
4975 7953 2.115052 TGTGTGATGGGTGTGGCC 59.885 61.111 0.00 0.00 0.00 5.36
4976 7954 2.436109 GTGTGATGGGTGTGGCCT 59.564 61.111 3.32 0.00 37.43 5.19
4977 7955 1.973281 GTGTGATGGGTGTGGCCTG 60.973 63.158 3.32 0.00 37.43 4.85
4978 7956 2.152729 TGTGATGGGTGTGGCCTGA 61.153 57.895 3.32 0.00 37.43 3.86
4979 7957 1.675641 GTGATGGGTGTGGCCTGAC 60.676 63.158 3.32 0.00 37.43 3.51
4980 7958 1.847506 TGATGGGTGTGGCCTGACT 60.848 57.895 3.32 0.00 37.43 3.41
4981 7959 1.078143 GATGGGTGTGGCCTGACTC 60.078 63.158 3.32 0.08 37.43 3.36
4982 7960 1.539869 ATGGGTGTGGCCTGACTCT 60.540 57.895 3.32 0.00 37.43 3.24
4983 7961 1.136329 ATGGGTGTGGCCTGACTCTT 61.136 55.000 3.32 0.00 37.43 2.85
4984 7962 1.302832 GGGTGTGGCCTGACTCTTG 60.303 63.158 3.32 0.00 37.43 3.02
4985 7963 1.754745 GGTGTGGCCTGACTCTTGA 59.245 57.895 3.32 0.00 0.00 3.02
4986 7964 0.321122 GGTGTGGCCTGACTCTTGAG 60.321 60.000 3.32 0.00 0.00 3.02
4987 7965 0.321122 GTGTGGCCTGACTCTTGAGG 60.321 60.000 3.32 0.00 0.00 3.86
4988 7966 1.298014 GTGGCCTGACTCTTGAGGG 59.702 63.158 3.32 0.00 0.00 4.30
4989 7967 1.152030 TGGCCTGACTCTTGAGGGT 60.152 57.895 3.32 0.00 0.00 4.34
4990 7968 0.768221 TGGCCTGACTCTTGAGGGTT 60.768 55.000 3.32 0.00 0.00 4.11
4991 7969 0.035915 GGCCTGACTCTTGAGGGTTC 60.036 60.000 0.00 0.00 0.00 3.62
4992 7970 0.980423 GCCTGACTCTTGAGGGTTCT 59.020 55.000 2.55 0.00 0.00 3.01
4993 7971 1.349357 GCCTGACTCTTGAGGGTTCTT 59.651 52.381 2.55 0.00 0.00 2.52
4994 7972 2.873649 GCCTGACTCTTGAGGGTTCTTG 60.874 54.545 2.55 0.00 0.00 3.02
4995 7973 2.289945 CCTGACTCTTGAGGGTTCTTGG 60.290 54.545 2.55 0.00 0.00 3.61
4996 7974 1.072331 TGACTCTTGAGGGTTCTTGGC 59.928 52.381 2.55 0.00 0.00 4.52
4997 7975 1.349357 GACTCTTGAGGGTTCTTGGCT 59.651 52.381 2.55 0.00 0.00 4.75
4998 7976 1.072965 ACTCTTGAGGGTTCTTGGCTG 59.927 52.381 2.55 0.00 0.00 4.85
4999 7977 0.250901 TCTTGAGGGTTCTTGGCTGC 60.251 55.000 0.00 0.00 0.00 5.25
5000 7978 0.538057 CTTGAGGGTTCTTGGCTGCA 60.538 55.000 0.50 0.00 0.00 4.41
5001 7979 0.538057 TTGAGGGTTCTTGGCTGCAG 60.538 55.000 10.11 10.11 0.00 4.41
5002 7980 1.676967 GAGGGTTCTTGGCTGCAGG 60.677 63.158 17.12 0.00 0.00 4.85
5003 7981 2.677875 GGGTTCTTGGCTGCAGGG 60.678 66.667 17.12 0.00 0.00 4.45
5004 7982 2.116125 GGTTCTTGGCTGCAGGGT 59.884 61.111 17.12 0.00 0.00 4.34
5005 7983 1.531602 GGTTCTTGGCTGCAGGGTT 60.532 57.895 17.12 0.00 0.00 4.11
5006 7984 1.115326 GGTTCTTGGCTGCAGGGTTT 61.115 55.000 17.12 0.00 0.00 3.27
5007 7985 1.616159 GTTCTTGGCTGCAGGGTTTA 58.384 50.000 17.12 0.00 0.00 2.01
5008 7986 1.960689 GTTCTTGGCTGCAGGGTTTAA 59.039 47.619 17.12 0.00 0.00 1.52
5009 7987 1.909700 TCTTGGCTGCAGGGTTTAAG 58.090 50.000 17.12 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.031864 AGGAGTTATCGAGATATAAACATGCAG 58.968 37.037 0.00 0.00 0.00 4.41
24 25 5.189934 CCTTGAACAACTAGGGAGGAGTTAT 59.810 44.000 0.00 0.00 37.74 1.89
27 28 2.907042 CCTTGAACAACTAGGGAGGAGT 59.093 50.000 0.00 0.00 37.74 3.85
52 53 0.588252 AAGCGTGACAACATCAGTGC 59.412 50.000 0.00 0.00 38.28 4.40
72 73 1.327690 CCTGGCATGCCATTGCTTCT 61.328 55.000 38.47 0.00 46.15 2.85
139 145 7.066525 TCTCACAACTTGTTTTTAGTCCGATTT 59.933 33.333 0.00 0.00 0.00 2.17
140 146 6.540914 TCTCACAACTTGTTTTTAGTCCGATT 59.459 34.615 0.00 0.00 0.00 3.34
157 163 7.707035 CCATAACTACTGGTTATCTCTCACAAC 59.293 40.741 0.00 0.00 45.99 3.32
194 215 0.615331 GCCCTCTGGTTGATCTCACA 59.385 55.000 0.00 0.00 0.00 3.58
206 227 0.178992 TTGGACAACCTTGCCCTCTG 60.179 55.000 0.00 0.00 37.04 3.35
222 243 6.425721 TCCTTCGTAAATGAAGTTACAGTTGG 59.574 38.462 10.28 0.00 43.06 3.77
273 294 9.788960 CAAAAGAACTTGAAAACTTAGCTAACT 57.211 29.630 0.86 0.00 0.00 2.24
296 318 0.911769 AGATGCCGTCCCTGATCAAA 59.088 50.000 0.00 0.00 0.00 2.69
304 326 4.778143 AACCGCAGATGCCGTCCC 62.778 66.667 0.00 0.00 37.91 4.46
307 329 1.815421 GATCAACCGCAGATGCCGT 60.815 57.895 0.00 0.00 37.91 5.68
308 330 2.874694 CGATCAACCGCAGATGCCG 61.875 63.158 0.00 0.00 37.91 5.69
309 331 0.882042 ATCGATCAACCGCAGATGCC 60.882 55.000 0.00 0.00 37.91 4.40
331 353 3.755378 GTGGGATACAGATTGGATCATGC 59.245 47.826 3.86 0.00 39.50 4.06
397 419 7.003939 TGTCACTTTATGCGAGACAATATTG 57.996 36.000 14.01 14.01 36.39 1.90
402 424 4.566759 GCTATGTCACTTTATGCGAGACAA 59.433 41.667 0.00 0.00 41.86 3.18
431 1507 3.701532 ATTGAAACGAAGCAAAACCGA 57.298 38.095 0.00 0.00 0.00 4.69
451 1527 6.183361 CCTCCCCCTATCTTGATAATGTGAAA 60.183 42.308 0.00 0.00 0.00 2.69
471 1547 3.994931 TTACTAGTTTCTTGCCCTCCC 57.005 47.619 0.00 0.00 0.00 4.30
476 1552 5.183228 TGGCTACATTACTAGTTTCTTGCC 58.817 41.667 0.00 9.35 36.38 4.52
477 1553 6.927294 ATGGCTACATTACTAGTTTCTTGC 57.073 37.500 0.00 0.00 32.00 4.01
478 1554 8.268850 ACAATGGCTACATTACTAGTTTCTTG 57.731 34.615 0.00 0.00 45.24 3.02
480 1556 9.601217 CTTACAATGGCTACATTACTAGTTTCT 57.399 33.333 0.00 0.00 45.24 2.52
481 1557 8.336080 GCTTACAATGGCTACATTACTAGTTTC 58.664 37.037 0.00 0.00 45.24 2.78
491 1567 3.380471 TTGGGCTTACAATGGCTACAT 57.620 42.857 0.00 0.00 39.54 2.29
511 1587 1.486310 TCGGCCATAAAGCTCTGTGAT 59.514 47.619 2.24 0.00 0.00 3.06
513 1589 1.737838 TTCGGCCATAAAGCTCTGTG 58.262 50.000 2.24 0.00 0.00 3.66
547 1626 1.673329 GGTGAAGGGTCGAGAAAGCTC 60.673 57.143 0.00 0.00 37.81 4.09
556 1635 0.880278 CCGCATATGGTGAAGGGTCG 60.880 60.000 4.56 0.00 0.00 4.79
558 1637 0.986019 TCCCGCATATGGTGAAGGGT 60.986 55.000 4.56 0.00 43.60 4.34
690 2374 3.055719 CTGCGTCATTTGCCGGGT 61.056 61.111 2.18 0.00 0.00 5.28
698 2382 2.190578 GCCCTAGGCTGCGTCATT 59.809 61.111 2.05 0.00 46.69 2.57
722 2406 2.423446 GCCCAGCCTCCAGATACG 59.577 66.667 0.00 0.00 0.00 3.06
725 2409 3.790437 CGTGCCCAGCCTCCAGAT 61.790 66.667 0.00 0.00 0.00 2.90
743 2427 2.037511 TGAGTCATGTCATGCTGTCACA 59.962 45.455 8.03 1.29 0.00 3.58
747 2431 5.717078 AAAAATGAGTCATGTCATGCTGT 57.283 34.783 6.34 0.00 37.24 4.40
780 2464 5.188434 CCCACACATGATTCAGTCTATTGT 58.812 41.667 0.00 0.00 0.00 2.71
789 2473 2.150390 CGTCAACCCACACATGATTCA 58.850 47.619 0.00 0.00 0.00 2.57
794 2478 0.321210 TAGCCGTCAACCCACACATG 60.321 55.000 0.00 0.00 0.00 3.21
797 2481 1.199097 CATTTAGCCGTCAACCCACAC 59.801 52.381 0.00 0.00 0.00 3.82
831 2515 4.805192 GCACGACACTATAATTAAACGGGA 59.195 41.667 0.00 0.00 0.00 5.14
843 2527 2.584608 GCCCAGGCACGACACTAT 59.415 61.111 3.12 0.00 41.49 2.12
889 2573 3.728279 CTAACTACCCGGGCCGTGC 62.728 68.421 26.32 0.00 0.00 5.34
890 2574 2.497770 CTAACTACCCGGGCCGTG 59.502 66.667 26.32 17.42 0.00 4.94
891 2575 3.464494 GCTAACTACCCGGGCCGT 61.464 66.667 26.32 15.72 0.00 5.68
933 2617 1.227438 CCTGGGTTATACGTGCCCG 60.227 63.158 0.00 0.00 45.19 6.13
935 2619 1.525306 GGCCTGGGTTATACGTGCC 60.525 63.158 0.00 0.00 0.00 5.01
938 2622 3.223226 CCGGCCTGGGTTATACGT 58.777 61.111 0.00 0.00 0.00 3.57
980 2664 1.178534 CGGACACAAACCTGGCCATT 61.179 55.000 5.51 0.00 39.72 3.16
981 2665 1.603455 CGGACACAAACCTGGCCAT 60.603 57.895 5.51 0.00 39.72 4.40
1145 2837 1.900351 CCGAGACCTCCATCAGCAA 59.100 57.895 0.00 0.00 0.00 3.91
1149 2841 2.038813 TGGCCGAGACCTCCATCA 59.961 61.111 0.00 0.00 0.00 3.07
1233 2925 3.991536 GACGAAGGGAGCAGCCGTC 62.992 68.421 4.24 4.24 41.85 4.79
1304 3006 2.629639 CCCACAAGATAGGGGAGGAGAA 60.630 54.545 0.00 0.00 45.08 2.87
1305 3007 1.062121 CCCACAAGATAGGGGAGGAGA 60.062 57.143 0.00 0.00 45.08 3.71
1341 3043 2.202703 GGCCTACACCTACACGCG 60.203 66.667 3.53 3.53 0.00 6.01
1345 3047 1.610554 GCTTCGGGCCTACACCTACA 61.611 60.000 0.84 0.00 34.27 2.74
1346 3048 1.143401 GCTTCGGGCCTACACCTAC 59.857 63.158 0.84 0.00 34.27 3.18
1349 3051 2.187163 GAGCTTCGGGCCTACACC 59.813 66.667 0.84 0.00 43.05 4.16
1426 3569 3.132646 AGCTCAACAGAATGCACCAAAAA 59.867 39.130 0.00 0.00 42.53 1.94
1427 3570 2.694628 AGCTCAACAGAATGCACCAAAA 59.305 40.909 0.00 0.00 42.53 2.44
1451 3594 2.426522 TCAGTGAAAAATCAGGGAGCG 58.573 47.619 0.00 0.00 0.00 5.03
1491 3635 3.876309 AACAAGCCCTACCTTCTTCAA 57.124 42.857 0.00 0.00 0.00 2.69
1511 3659 5.760253 GCTAAGTGCTAAATCTATGGAGCAA 59.240 40.000 0.00 0.00 45.92 3.91
1551 3703 4.096382 CCACAAATTCAGAATACCCTTCCG 59.904 45.833 0.00 0.00 0.00 4.30
1559 3711 8.815565 TTATAACAGGCCACAAATTCAGAATA 57.184 30.769 5.01 0.00 0.00 1.75
1580 3735 8.909923 TCATTTCTGTAACTCGGTCTCATTATA 58.090 33.333 0.00 0.00 0.00 0.98
1625 3780 3.070446 TCGACCATGGTCACTGTAAAAGT 59.930 43.478 37.42 3.94 44.77 2.66
1813 4324 6.156775 TGATTGATTCTGGTTCTATCCTGTCA 59.843 38.462 0.00 0.00 0.00 3.58
1897 4408 5.007626 TGACCAATCGACAAGCAAATATAGC 59.992 40.000 0.00 0.00 0.00 2.97
1902 4413 3.569701 ACTTGACCAATCGACAAGCAAAT 59.430 39.130 11.43 0.00 42.93 2.32
1907 4418 3.312421 ACAACACTTGACCAATCGACAAG 59.688 43.478 10.27 10.27 44.16 3.16
1913 4424 5.637810 TCGATTAGACAACACTTGACCAATC 59.362 40.000 0.00 0.00 0.00 2.67
1936 4447 2.032799 TGCTTCACGGTTGTTGTCAATC 59.967 45.455 0.00 0.00 35.92 2.67
1937 4448 2.020720 TGCTTCACGGTTGTTGTCAAT 58.979 42.857 0.00 0.00 35.92 2.57
1938 4449 1.454201 TGCTTCACGGTTGTTGTCAA 58.546 45.000 0.00 0.00 0.00 3.18
1942 4453 2.772568 TGAATGCTTCACGGTTGTTG 57.227 45.000 0.00 0.00 34.08 3.33
1944 4455 2.485426 CAGATGAATGCTTCACGGTTGT 59.515 45.455 1.44 0.00 43.48 3.32
1948 4459 2.096496 GGAACAGATGAATGCTTCACGG 59.904 50.000 1.44 1.27 43.48 4.94
1951 4462 3.726557 AGGGAACAGATGAATGCTTCA 57.273 42.857 1.85 1.85 45.01 3.02
1952 4463 6.325596 GTTAAAGGGAACAGATGAATGCTTC 58.674 40.000 0.00 0.00 0.00 3.86
1953 4464 5.106157 CGTTAAAGGGAACAGATGAATGCTT 60.106 40.000 0.00 0.00 0.00 3.91
1959 4590 6.785337 TCTATCGTTAAAGGGAACAGATGA 57.215 37.500 0.00 0.00 30.62 2.92
1961 4648 8.024145 AGATTCTATCGTTAAAGGGAACAGAT 57.976 34.615 0.00 0.00 31.87 2.90
1976 4663 9.794685 ACTGTATATGTGCATAAGATTCTATCG 57.205 33.333 0.00 0.00 0.00 2.92
1998 4685 6.992664 AGCTCTGATATTTCATAGGACTGT 57.007 37.500 1.74 0.00 0.00 3.55
2055 4742 1.953686 ACCCACATTGTCCTGTTTTCG 59.046 47.619 0.00 0.00 0.00 3.46
2122 4809 1.021202 CACCCAAAAGCAGACGTGAA 58.979 50.000 0.00 0.00 0.00 3.18
2221 4908 4.846779 TGCTGGATAAACTTGTTTGTCC 57.153 40.909 25.20 25.20 41.05 4.02
2250 4937 6.210584 TGAGAAGGTTGCATCGTATATATGGA 59.789 38.462 2.10 0.00 0.00 3.41
2260 4985 2.158986 AGATCCTGAGAAGGTTGCATCG 60.159 50.000 0.00 0.00 0.00 3.84
2296 5026 5.659440 ACAACACATTGACTTCCAAAACT 57.341 34.783 0.00 0.00 39.30 2.66
2355 5085 2.621998 AGCAGTATTCGCTACCGTACAT 59.378 45.455 0.00 0.00 38.15 2.29
2398 5128 9.694137 GCACTATTATAGGTAACAAGTTCTAGG 57.306 37.037 4.15 0.00 41.41 3.02
2401 5131 8.537016 TGTGCACTATTATAGGTAACAAGTTCT 58.463 33.333 19.41 0.00 41.41 3.01
2402 5132 8.601476 GTGTGCACTATTATAGGTAACAAGTTC 58.399 37.037 19.41 0.00 41.41 3.01
2403 5133 8.319146 AGTGTGCACTATTATAGGTAACAAGTT 58.681 33.333 19.41 0.00 40.43 2.66
2404 5134 7.764443 CAGTGTGCACTATTATAGGTAACAAGT 59.236 37.037 19.41 0.00 40.20 3.16
2405 5135 7.979537 TCAGTGTGCACTATTATAGGTAACAAG 59.020 37.037 19.41 0.73 40.20 3.16
2406 5136 7.842982 TCAGTGTGCACTATTATAGGTAACAA 58.157 34.615 19.41 0.00 40.20 2.83
2407 5137 7.412853 TCAGTGTGCACTATTATAGGTAACA 57.587 36.000 19.41 2.32 40.20 2.41
2408 5138 8.712285 TTTCAGTGTGCACTATTATAGGTAAC 57.288 34.615 19.41 2.81 40.20 2.50
2409 5139 9.158233 GTTTTCAGTGTGCACTATTATAGGTAA 57.842 33.333 19.41 0.00 40.20 2.85
2410 5140 8.315482 TGTTTTCAGTGTGCACTATTATAGGTA 58.685 33.333 19.41 0.00 40.20 3.08
2411 5141 7.165485 TGTTTTCAGTGTGCACTATTATAGGT 58.835 34.615 19.41 0.00 40.20 3.08
2412 5142 7.609760 TGTTTTCAGTGTGCACTATTATAGG 57.390 36.000 19.41 0.00 40.20 2.57
2413 5143 9.494479 CAATGTTTTCAGTGTGCACTATTATAG 57.506 33.333 19.41 0.00 40.20 1.31
2414 5144 8.458052 CCAATGTTTTCAGTGTGCACTATTATA 58.542 33.333 19.41 0.00 43.29 0.98
2415 5145 7.315142 CCAATGTTTTCAGTGTGCACTATTAT 58.685 34.615 19.41 0.00 43.29 1.28
2416 5146 6.294453 CCCAATGTTTTCAGTGTGCACTATTA 60.294 38.462 19.41 0.00 43.29 0.98
2417 5147 5.509501 CCCAATGTTTTCAGTGTGCACTATT 60.510 40.000 19.41 0.05 43.29 1.73
2418 5148 4.022068 CCCAATGTTTTCAGTGTGCACTAT 60.022 41.667 19.41 3.20 43.29 2.12
2419 5149 3.317711 CCCAATGTTTTCAGTGTGCACTA 59.682 43.478 19.41 1.23 43.29 2.74
2420 5150 2.101249 CCCAATGTTTTCAGTGTGCACT 59.899 45.455 19.41 0.00 43.29 4.40
2421 5151 2.100584 TCCCAATGTTTTCAGTGTGCAC 59.899 45.455 10.75 10.75 43.29 4.57
2422 5152 2.361757 CTCCCAATGTTTTCAGTGTGCA 59.638 45.455 0.00 0.00 43.29 4.57
2423 5153 2.622942 TCTCCCAATGTTTTCAGTGTGC 59.377 45.455 0.00 0.00 43.29 4.57
2424 5154 3.304928 GCTCTCCCAATGTTTTCAGTGTG 60.305 47.826 0.00 0.00 43.29 3.82
2425 5155 2.887152 GCTCTCCCAATGTTTTCAGTGT 59.113 45.455 0.00 0.00 43.29 3.55
2426 5156 2.886523 TGCTCTCCCAATGTTTTCAGTG 59.113 45.455 0.00 0.00 44.24 3.66
2427 5157 3.228188 TGCTCTCCCAATGTTTTCAGT 57.772 42.857 0.00 0.00 0.00 3.41
2428 5158 3.318839 TGTTGCTCTCCCAATGTTTTCAG 59.681 43.478 0.00 0.00 0.00 3.02
2429 5159 3.295093 TGTTGCTCTCCCAATGTTTTCA 58.705 40.909 0.00 0.00 0.00 2.69
2430 5160 4.051237 GTTGTTGCTCTCCCAATGTTTTC 58.949 43.478 0.00 0.00 0.00 2.29
2431 5161 3.450457 TGTTGTTGCTCTCCCAATGTTTT 59.550 39.130 0.00 0.00 0.00 2.43
2434 5164 2.233271 CTGTTGTTGCTCTCCCAATGT 58.767 47.619 0.00 0.00 0.00 2.71
2437 5167 0.106769 TGCTGTTGTTGCTCTCCCAA 60.107 50.000 0.00 0.00 0.00 4.12
2454 5184 0.037975 CACACCCAAAAGGATGCTGC 60.038 55.000 0.00 0.00 39.89 5.25
2532 5262 9.364989 CACTTTTCTATAAGAGGAACTTCTGAG 57.635 37.037 0.00 0.00 41.55 3.35
2585 5315 7.888424 ACAATTAATGTTGGTTAGTGGTTACC 58.112 34.615 0.00 0.00 40.06 2.85
2606 5336 9.817809 CTATATATATACTTCCGCACCAACAAT 57.182 33.333 0.00 0.00 0.00 2.71
2623 5353 8.489489 CAGGACAAGGTTGCATCCTATATATAT 58.511 37.037 16.73 0.00 39.66 0.86
2624 5354 7.678171 TCAGGACAAGGTTGCATCCTATATATA 59.322 37.037 16.73 0.00 39.66 0.86
2705 5435 4.042187 ACAGAAACAGGTCCAGATTAGCTT 59.958 41.667 0.00 0.00 0.00 3.74
2706 5436 3.584848 ACAGAAACAGGTCCAGATTAGCT 59.415 43.478 0.00 0.00 0.00 3.32
2720 5450 4.395959 ACCGTAGAAGACAACAGAAACA 57.604 40.909 0.00 0.00 0.00 2.83
2721 5451 4.385146 GCTACCGTAGAAGACAACAGAAAC 59.615 45.833 9.88 0.00 0.00 2.78
2828 5558 3.866651 TCTAGAAAAGGATGCTGCTGTC 58.133 45.455 0.00 0.00 0.00 3.51
2832 5562 7.742556 AGAATTATCTAGAAAAGGATGCTGC 57.257 36.000 0.00 0.00 32.88 5.25
2856 5586 8.164733 TGAATATTAAACCAACAGAACTGGGTA 58.835 33.333 6.76 0.00 38.36 3.69
2874 5604 7.939039 GGAATGGAGGACACTCAATGAATATTA 59.061 37.037 0.00 0.00 45.81 0.98
2952 5684 3.767711 TGGAAGTAAGAGACTGAGAGCA 58.232 45.455 0.00 0.00 38.87 4.26
2961 5693 5.729229 TCAAACCCCATATGGAAGTAAGAGA 59.271 40.000 24.00 12.04 37.39 3.10
2981 5713 6.990349 ACGAGTGAAGTAAGAGGAAAATCAAA 59.010 34.615 0.00 0.00 0.00 2.69
3002 5734 0.435008 CGCAAAAGAACCGAGACGAG 59.565 55.000 0.00 0.00 0.00 4.18
3016 5748 1.228094 TCAGGCCACATCACGCAAA 60.228 52.632 5.01 0.00 0.00 3.68
3040 5772 7.206981 AGTATGAGGAAAATCAACACACTTG 57.793 36.000 0.00 0.00 31.76 3.16
3060 5792 6.274157 ACAGAACAGAGACGAATGAAGTAT 57.726 37.500 0.00 0.00 0.00 2.12
3108 5840 7.088272 ACAAAGTAAGAGGAAAAACAACACAC 58.912 34.615 0.00 0.00 0.00 3.82
3109 5841 7.175990 AGACAAAGTAAGAGGAAAAACAACACA 59.824 33.333 0.00 0.00 0.00 3.72
3110 5842 7.535997 AGACAAAGTAAGAGGAAAAACAACAC 58.464 34.615 0.00 0.00 0.00 3.32
3111 5843 7.610305 AGAGACAAAGTAAGAGGAAAAACAACA 59.390 33.333 0.00 0.00 0.00 3.33
3112 5844 7.910683 CAGAGACAAAGTAAGAGGAAAAACAAC 59.089 37.037 0.00 0.00 0.00 3.32
3113 5845 7.610305 ACAGAGACAAAGTAAGAGGAAAAACAA 59.390 33.333 0.00 0.00 0.00 2.83
3114 5846 7.110155 ACAGAGACAAAGTAAGAGGAAAAACA 58.890 34.615 0.00 0.00 0.00 2.83
3115 5847 7.555306 ACAGAGACAAAGTAAGAGGAAAAAC 57.445 36.000 0.00 0.00 0.00 2.43
3116 5848 8.047310 AGAACAGAGACAAAGTAAGAGGAAAAA 58.953 33.333 0.00 0.00 0.00 1.94
3127 6020 4.393062 CACACAACAGAACAGAGACAAAGT 59.607 41.667 0.00 0.00 0.00 2.66
3128 6021 4.631377 TCACACAACAGAACAGAGACAAAG 59.369 41.667 0.00 0.00 0.00 2.77
3135 6028 1.866601 CGCATCACACAACAGAACAGA 59.133 47.619 0.00 0.00 0.00 3.41
3155 6048 4.993029 ATGTCACTTAGCTAGTCAGACC 57.007 45.455 12.26 0.00 33.85 3.85
3157 6050 6.782082 ATGAATGTCACTTAGCTAGTCAGA 57.218 37.500 0.00 0.00 33.85 3.27
3238 6131 3.367703 GCAGGTCATTAATTGCACTTGCT 60.368 43.478 14.31 0.00 42.66 3.91
3325 6218 2.876368 CTAGGCCAGCAGGTTTCCCG 62.876 65.000 5.01 0.00 37.19 5.14
3334 6227 2.897271 TTTCCAAATCTAGGCCAGCA 57.103 45.000 5.01 0.00 0.00 4.41
3359 6252 4.284178 CATGGAGGATTCTTCCCAACATT 58.716 43.478 11.94 0.00 43.76 2.71
3361 6254 2.621407 GCATGGAGGATTCTTCCCAACA 60.621 50.000 11.94 0.00 43.76 3.33
3460 6353 5.010282 ACTTTTACGATGATTCCTTGGCTT 58.990 37.500 0.00 0.00 0.00 4.35
3504 6397 3.265221 AGGAATCAGAGATGGCTGTCAAA 59.735 43.478 0.00 0.00 37.20 2.69
3511 6404 1.134159 ACTGCAGGAATCAGAGATGGC 60.134 52.381 19.93 0.00 35.61 4.40
3524 6417 2.896801 GCACACGGTTCACTGCAGG 61.897 63.158 19.93 7.28 0.00 4.85
3534 6427 1.399089 GGCGTATAAAATGCACACGGT 59.601 47.619 0.00 0.00 42.33 4.83
3536 6429 1.725490 CGGCGTATAAAATGCACACG 58.275 50.000 0.00 0.00 42.33 4.49
3551 6444 1.290203 GTATCATCCATATGGCGGCG 58.710 55.000 17.58 0.51 33.61 6.46
3557 6450 7.863877 CACAACAAACCATGTATCATCCATATG 59.136 37.037 0.00 0.00 42.99 1.78
3600 6494 0.250234 TGATGCTTCCAGTTCCTCCG 59.750 55.000 0.00 0.00 0.00 4.63
3645 6539 3.884895 TCAACAGACAATTCAGGTGTGT 58.115 40.909 0.00 0.00 43.63 3.72
3660 6554 5.745294 CCTTGTTTGTGAGAAACATCAACAG 59.255 40.000 8.77 3.20 39.56 3.16
3729 6630 3.443681 ACTGCAAAAATGATAGTTCCCGG 59.556 43.478 0.00 0.00 0.00 5.73
3761 6663 8.771920 TCAACTATGAATCGTCAGTAAAATGT 57.228 30.769 0.00 0.00 37.14 2.71
3803 6732 2.405892 ACAGTGAAATTGTTCGCAGC 57.594 45.000 0.00 0.00 45.11 5.25
3871 6800 0.710567 CGATGTCACACGCTCTGAAC 59.289 55.000 0.00 0.00 0.00 3.18
3874 6803 1.139989 AAACGATGTCACACGCTCTG 58.860 50.000 0.00 0.00 0.00 3.35
3875 6804 1.526887 CAAAACGATGTCACACGCTCT 59.473 47.619 0.00 0.00 0.00 4.09
3877 6806 0.041312 GCAAAACGATGTCACACGCT 60.041 50.000 0.00 0.00 0.00 5.07
3878 6807 0.041312 AGCAAAACGATGTCACACGC 60.041 50.000 0.00 0.00 0.00 5.34
3889 6823 8.819152 ACAATTTTTGATACAAAAGCAAAACG 57.181 26.923 9.09 0.00 40.12 3.60
3962 6896 4.639334 AGAAAGACAGCATATGCATCGAT 58.361 39.130 28.62 17.89 45.16 3.59
3964 6898 4.808077 AAGAAAGACAGCATATGCATCG 57.192 40.909 28.62 18.31 45.16 3.84
3983 6921 4.096311 CGCTTCATCTGATTCAGCAAAAG 58.904 43.478 8.89 11.59 0.00 2.27
4044 6982 8.615225 ATGCTAGTACATCTTAGCAAGTAGGCT 61.615 40.741 15.89 0.00 46.76 4.58
4045 6983 5.221263 TGCTAGTACATCTTAGCAAGTAGGC 60.221 44.000 11.05 0.00 41.87 3.93
4049 6987 7.439655 GCTTAATGCTAGTACATCTTAGCAAGT 59.560 37.037 15.89 10.78 46.76 3.16
4090 7028 4.569943 AGGCAATGTGATGTACCGATATC 58.430 43.478 0.00 0.00 0.00 1.63
4104 7042 3.627395 TCCGTTCATTCTAGGCAATGT 57.373 42.857 4.57 0.00 35.56 2.71
4115 7054 0.881159 TTGCGACCGTTCCGTTCATT 60.881 50.000 0.00 0.00 0.00 2.57
4118 7057 1.083209 GTTTGCGACCGTTCCGTTC 60.083 57.895 0.00 0.00 0.00 3.95
4119 7058 2.536673 GGTTTGCGACCGTTCCGTT 61.537 57.895 0.00 0.00 39.00 4.44
4120 7059 2.968697 GGTTTGCGACCGTTCCGT 60.969 61.111 0.00 0.00 39.00 4.69
4128 7067 1.485943 GACTTCGTCGGTTTGCGAC 59.514 57.895 0.00 0.00 36.82 5.19
4143 7082 3.005578 GGTCTGGTTCTAACTTGTCGACT 59.994 47.826 17.92 0.00 0.00 4.18
4144 7083 3.315418 GGTCTGGTTCTAACTTGTCGAC 58.685 50.000 9.11 9.11 0.00 4.20
4146 7085 2.036733 TGGGTCTGGTTCTAACTTGTCG 59.963 50.000 0.00 0.00 0.00 4.35
4147 7086 3.764237 TGGGTCTGGTTCTAACTTGTC 57.236 47.619 0.00 0.00 0.00 3.18
4159 7098 1.984570 TCGAGGCTCTTGGGTCTGG 60.985 63.158 13.50 0.00 0.00 3.86
4162 7101 0.034896 TTTGTCGAGGCTCTTGGGTC 59.965 55.000 13.50 0.00 0.00 4.46
4163 7102 0.693049 ATTTGTCGAGGCTCTTGGGT 59.307 50.000 13.50 0.00 0.00 4.51
4165 7104 5.371115 TTTTAATTTGTCGAGGCTCTTGG 57.629 39.130 13.50 0.00 0.00 3.61
4171 7110 6.842163 TCTTGAGATTTTAATTTGTCGAGGC 58.158 36.000 0.00 0.00 0.00 4.70
4185 7132 5.478332 GTGATCTTTGGGGTTCTTGAGATTT 59.522 40.000 0.00 0.00 0.00 2.17
4197 7144 3.084786 GTTCTTCAGGTGATCTTTGGGG 58.915 50.000 0.00 0.00 0.00 4.96
4226 7173 8.229811 CAGATTTTTCAAATGTCGTATGAGTGA 58.770 33.333 0.00 0.00 0.00 3.41
4264 7218 4.742438 TTTGACACGCCTATCTTTGAAC 57.258 40.909 0.00 0.00 0.00 3.18
4278 7232 8.207906 GCTATTCGACTTTTCAAATTTTGACAC 58.792 33.333 11.30 1.95 39.87 3.67
4280 7235 8.280909 TGCTATTCGACTTTTCAAATTTTGAC 57.719 30.769 11.30 0.00 39.87 3.18
4319 7277 6.910290 ACAGGGTAGGTATTATTTAGGACCAA 59.090 38.462 0.00 0.00 34.18 3.67
4343 7301 6.128200 TGCTTGATTGATGATGAGTGTGTAAC 60.128 38.462 0.00 0.00 37.35 2.50
4347 7305 4.957759 TGCTTGATTGATGATGAGTGTG 57.042 40.909 0.00 0.00 0.00 3.82
4358 7323 7.546358 TCTCTTTTTGTTTCTTGCTTGATTGA 58.454 30.769 0.00 0.00 0.00 2.57
4359 7324 7.703621 TCTCTCTTTTTGTTTCTTGCTTGATTG 59.296 33.333 0.00 0.00 0.00 2.67
4360 7325 7.775120 TCTCTCTTTTTGTTTCTTGCTTGATT 58.225 30.769 0.00 0.00 0.00 2.57
4366 7331 5.520288 GGGTTTCTCTCTTTTTGTTTCTTGC 59.480 40.000 0.00 0.00 0.00 4.01
4374 7339 3.068165 GGGTGTGGGTTTCTCTCTTTTTG 59.932 47.826 0.00 0.00 0.00 2.44
4407 7372 1.300963 GCTGGTCCATGCCTCAAGA 59.699 57.895 0.00 0.00 0.00 3.02
4416 7381 2.693864 CAGGAGGGGCTGGTCCAT 60.694 66.667 0.00 0.00 35.02 3.41
4424 7389 4.299796 TGGGTTTGCAGGAGGGGC 62.300 66.667 0.00 0.00 0.00 5.80
4427 7392 1.252904 CCATGTGGGTTTGCAGGAGG 61.253 60.000 0.00 0.00 0.00 4.30
4430 7395 0.827089 TGTCCATGTGGGTTTGCAGG 60.827 55.000 0.00 0.00 38.11 4.85
4438 7403 3.368248 AGAAAATCCATGTCCATGTGGG 58.632 45.455 6.53 0.00 37.11 4.61
4463 7433 2.751357 CTTGGTTTTCGGCCGGGGTA 62.751 60.000 27.83 1.61 0.00 3.69
4654 7624 7.777440 TGTATATATAGTCAGGAGCCATGAGAG 59.223 40.741 0.00 0.00 0.00 3.20
4655 7625 7.643123 TGTATATATAGTCAGGAGCCATGAGA 58.357 38.462 0.00 0.00 0.00 3.27
4659 7633 7.728083 GGAGATGTATATATAGTCAGGAGCCAT 59.272 40.741 0.00 0.00 0.00 4.40
4722 7696 0.249447 GCGGTGATGATCGATGGTGA 60.249 55.000 0.54 0.00 0.00 4.02
4729 7703 0.659427 AATGCTTGCGGTGATGATCG 59.341 50.000 0.00 0.00 0.00 3.69
4730 7704 1.333524 CGAATGCTTGCGGTGATGATC 60.334 52.381 0.00 0.00 0.00 2.92
4731 7705 0.659427 CGAATGCTTGCGGTGATGAT 59.341 50.000 0.00 0.00 0.00 2.45
4732 7706 0.673333 ACGAATGCTTGCGGTGATGA 60.673 50.000 4.83 0.00 0.00 2.92
4904 7882 2.124570 GTGAGCCGCATGGATGGT 60.125 61.111 0.00 0.00 37.49 3.55
4906 7884 2.475466 GGTGTGAGCCGCATGGATG 61.475 63.158 0.00 0.00 37.49 3.51
4907 7885 2.124570 GGTGTGAGCCGCATGGAT 60.125 61.111 0.00 0.00 37.49 3.41
4908 7886 1.621672 TATGGTGTGAGCCGCATGGA 61.622 55.000 0.00 0.00 37.49 3.41
4909 7887 0.535780 ATATGGTGTGAGCCGCATGG 60.536 55.000 0.00 0.00 38.77 3.66
4910 7888 0.589708 CATATGGTGTGAGCCGCATG 59.410 55.000 0.00 0.00 0.00 4.06
4911 7889 0.535780 CCATATGGTGTGAGCCGCAT 60.536 55.000 14.09 0.00 0.00 4.73
4923 7901 4.356405 TGGCTCATCAGTAACCATATGG 57.644 45.455 20.68 20.68 42.17 2.74
4925 7903 5.372343 TGTTGGCTCATCAGTAACCATAT 57.628 39.130 0.00 0.00 0.00 1.78
4943 7921 2.600173 ACACCCCCGCCATTGTTG 60.600 61.111 0.00 0.00 0.00 3.33
4956 7934 2.268076 GCCACACCCATCACACACC 61.268 63.158 0.00 0.00 0.00 4.16
4962 7940 1.841302 GAGTCAGGCCACACCCATCA 61.841 60.000 5.01 0.00 40.58 3.07
4963 7941 1.078143 GAGTCAGGCCACACCCATC 60.078 63.158 5.01 0.00 40.58 3.51
4964 7942 1.136329 AAGAGTCAGGCCACACCCAT 61.136 55.000 5.01 0.00 40.58 4.00
4965 7943 1.770110 AAGAGTCAGGCCACACCCA 60.770 57.895 5.01 0.00 40.58 4.51
4967 7945 0.321122 CTCAAGAGTCAGGCCACACC 60.321 60.000 5.01 0.00 39.61 4.16
4969 7947 1.483595 CCCTCAAGAGTCAGGCCACA 61.484 60.000 5.01 0.00 0.00 4.17
4970 7948 1.298014 CCCTCAAGAGTCAGGCCAC 59.702 63.158 5.01 0.00 0.00 5.01
4971 7949 0.768221 AACCCTCAAGAGTCAGGCCA 60.768 55.000 5.01 0.00 0.00 5.36
4973 7951 0.980423 AGAACCCTCAAGAGTCAGGC 59.020 55.000 0.00 0.00 0.00 4.85
4974 7952 2.289945 CCAAGAACCCTCAAGAGTCAGG 60.290 54.545 0.00 0.00 0.00 3.86
4975 7953 2.873649 GCCAAGAACCCTCAAGAGTCAG 60.874 54.545 0.00 0.00 0.00 3.51
4976 7954 1.072331 GCCAAGAACCCTCAAGAGTCA 59.928 52.381 0.00 0.00 0.00 3.41
4977 7955 1.349357 AGCCAAGAACCCTCAAGAGTC 59.651 52.381 0.00 0.00 0.00 3.36
4978 7956 1.072965 CAGCCAAGAACCCTCAAGAGT 59.927 52.381 0.00 0.00 0.00 3.24
4979 7957 1.818642 CAGCCAAGAACCCTCAAGAG 58.181 55.000 0.00 0.00 0.00 2.85
4980 7958 0.250901 GCAGCCAAGAACCCTCAAGA 60.251 55.000 0.00 0.00 0.00 3.02
4981 7959 0.538057 TGCAGCCAAGAACCCTCAAG 60.538 55.000 0.00 0.00 0.00 3.02
4982 7960 0.538057 CTGCAGCCAAGAACCCTCAA 60.538 55.000 0.00 0.00 0.00 3.02
4983 7961 1.073722 CTGCAGCCAAGAACCCTCA 59.926 57.895 0.00 0.00 0.00 3.86
4984 7962 1.676967 CCTGCAGCCAAGAACCCTC 60.677 63.158 8.66 0.00 0.00 4.30
4985 7963 2.437897 CCTGCAGCCAAGAACCCT 59.562 61.111 8.66 0.00 0.00 4.34
4986 7964 2.677875 CCCTGCAGCCAAGAACCC 60.678 66.667 8.66 0.00 0.00 4.11
4987 7965 1.115326 AAACCCTGCAGCCAAGAACC 61.115 55.000 8.66 0.00 0.00 3.62
4988 7966 1.616159 TAAACCCTGCAGCCAAGAAC 58.384 50.000 8.66 0.00 0.00 3.01
4989 7967 2.238521 CTTAAACCCTGCAGCCAAGAA 58.761 47.619 8.66 0.00 0.00 2.52
4990 7968 1.909700 CTTAAACCCTGCAGCCAAGA 58.090 50.000 8.66 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.