Multiple sequence alignment - TraesCS4B01G014900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G014900 chr4B 100.000 3096 0 0 1 3096 10610461 10607366 0.000000e+00 5718.0
1 TraesCS4B01G014900 chr4D 85.462 2435 179 95 1 2368 6044767 6042441 0.000000e+00 2374.0
2 TraesCS4B01G014900 chr4A 87.471 2155 128 66 1 2107 597670822 597672882 0.000000e+00 2353.0
3 TraesCS4B01G014900 chr4A 86.435 575 46 15 2538 3095 597673445 597674004 4.420000e-168 601.0
4 TraesCS4B01G014900 chr4A 89.153 378 38 3 2166 2541 597673006 597673382 4.670000e-128 468.0
5 TraesCS4B01G014900 chr1A 86.262 313 42 1 1463 1775 442161562 442161873 3.820000e-89 339.0
6 TraesCS4B01G014900 chr1A 93.617 141 9 0 1244 1384 442158053 442158193 8.700000e-51 211.0
7 TraesCS4B01G014900 chr1A 95.455 44 2 0 1731 1774 442169556 442169599 1.540000e-08 71.3
8 TraesCS4B01G014900 chr7D 80.556 180 29 6 2364 2539 507424451 507424274 1.940000e-27 134.0
9 TraesCS4B01G014900 chr2A 81.208 149 25 2 2398 2545 121181318 121181172 1.950000e-22 117.0
10 TraesCS4B01G014900 chr2D 100.000 28 0 0 2503 2530 502641862 502641835 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G014900 chr4B 10607366 10610461 3095 True 5718.000000 5718 100.000000 1 3096 1 chr4B.!!$R1 3095
1 TraesCS4B01G014900 chr4D 6042441 6044767 2326 True 2374.000000 2374 85.462000 1 2368 1 chr4D.!!$R1 2367
2 TraesCS4B01G014900 chr4A 597670822 597674004 3182 False 1140.666667 2353 87.686333 1 3095 3 chr4A.!!$F1 3094
3 TraesCS4B01G014900 chr1A 442158053 442161873 3820 False 275.000000 339 89.939500 1244 1775 2 chr1A.!!$F2 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 979 0.181114 CCACCACCATCACCATCGAT 59.819 55.0 0.0 0.0 0.0 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2778 6363 0.039437 GAGCAACGACGAGACCTTGA 60.039 55.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 76 6.336842 GGTGTTGTACCTTGAGTCTACTTA 57.663 41.667 0.00 0.00 46.51 2.24
72 77 6.388278 GGTGTTGTACCTTGAGTCTACTTAG 58.612 44.000 0.00 0.00 46.51 2.18
73 78 6.015603 GGTGTTGTACCTTGAGTCTACTTAGT 60.016 42.308 0.00 0.00 46.51 2.24
74 79 7.432059 GTGTTGTACCTTGAGTCTACTTAGTT 58.568 38.462 0.00 0.00 0.00 2.24
75 80 7.594386 GTGTTGTACCTTGAGTCTACTTAGTTC 59.406 40.741 0.00 0.00 0.00 3.01
90 96 2.071688 AGTTCAGAGCGTGTGACATC 57.928 50.000 0.00 0.00 0.00 3.06
163 169 0.587768 CTGTTTGACATGCGTGCTCA 59.412 50.000 5.64 6.47 0.00 4.26
165 171 1.197492 TGTTTGACATGCGTGCTCATC 59.803 47.619 5.64 0.00 0.00 2.92
184 194 4.450080 TCATCGATGCATATGCTGTCTTTC 59.550 41.667 27.13 13.19 42.66 2.62
201 211 6.675026 TGTCTTTCTTTTGCTGAATCAGATG 58.325 36.000 15.38 0.00 32.44 2.90
305 315 4.664150 TTGTGCAGATATCGGTACATCA 57.336 40.909 22.84 10.11 36.70 3.07
316 327 3.028130 TCGGTACATCACATTGCCTAGA 58.972 45.455 0.00 0.00 0.00 2.43
319 330 4.212004 CGGTACATCACATTGCCTAGAATG 59.788 45.833 0.00 3.27 38.97 2.67
320 331 5.368145 GGTACATCACATTGCCTAGAATGA 58.632 41.667 10.31 0.00 36.89 2.57
321 332 5.822519 GGTACATCACATTGCCTAGAATGAA 59.177 40.000 10.31 0.69 36.89 2.57
322 333 5.824904 ACATCACATTGCCTAGAATGAAC 57.175 39.130 10.31 0.00 36.89 3.18
323 334 4.333649 ACATCACATTGCCTAGAATGAACG 59.666 41.667 10.31 0.00 36.89 3.95
327 338 3.689649 ACATTGCCTAGAATGAACGGAAC 59.310 43.478 10.31 0.00 36.89 3.62
329 340 6.255844 CATTGCCTAGAATGAACGGAACGG 62.256 50.000 0.00 0.00 45.69 4.44
363 374 3.669122 CGAAGTCGACAAGTTAGAACCAG 59.331 47.826 19.50 0.00 43.02 4.00
364 375 4.556104 CGAAGTCGACAAGTTAGAACCAGA 60.556 45.833 19.50 0.00 43.02 3.86
366 377 3.005578 AGTCGACAAGTTAGAACCAGACC 59.994 47.826 19.50 0.00 0.00 3.85
372 383 4.202367 ACAAGTTAGAACCAGACCCAAGAG 60.202 45.833 0.00 0.00 0.00 2.85
386 405 3.244770 ACCCAAGAGCCTCGACAAATTAA 60.245 43.478 0.00 0.00 0.00 1.40
398 417 7.271438 GCCTCGACAAATTAAAATCTCAAGAAC 59.729 37.037 0.00 0.00 0.00 3.01
479 505 2.014594 GCCGGTTCAAAGATAGGCG 58.985 57.895 1.90 0.00 34.94 5.52
481 508 1.006832 CCGGTTCAAAGATAGGCGTG 58.993 55.000 0.00 0.00 0.00 5.34
520 550 0.242286 ATAGCAGATCGAATCGCGCT 59.758 50.000 5.56 11.82 42.72 5.92
544 574 7.383156 TTGGTCCTAAATAATACCTACCCTG 57.617 40.000 0.00 0.00 32.99 4.45
548 578 8.370940 GGTCCTAAATAATACCTACCCTGTTAC 58.629 40.741 0.00 0.00 0.00 2.50
559 596 4.162320 CCTACCCTGTTACACACTCATCAT 59.838 45.833 0.00 0.00 0.00 2.45
560 597 4.207891 ACCCTGTTACACACTCATCATC 57.792 45.455 0.00 0.00 0.00 2.92
561 598 3.582647 ACCCTGTTACACACTCATCATCA 59.417 43.478 0.00 0.00 0.00 3.07
567 604 7.368480 TGTTACACACTCATCATCAATCAAG 57.632 36.000 0.00 0.00 0.00 3.02
575 612 6.527023 CACTCATCATCAATCAAGCAAGAAAC 59.473 38.462 0.00 0.00 0.00 2.78
608 645 1.640670 ACCCACACCCAATATGCTTCT 59.359 47.619 0.00 0.00 0.00 2.85
625 662 0.907486 TCTCTTGAGGCATGGACCAG 59.093 55.000 0.00 0.00 0.00 4.00
631 668 4.512914 GGCATGGACCAGCCCCTC 62.513 72.222 19.01 0.72 45.18 4.30
639 676 2.677875 CCAGCCCCTCCTGCAAAC 60.678 66.667 0.00 0.00 0.00 2.93
923 969 0.322816 GCATCACTCACCACCACCAT 60.323 55.000 0.00 0.00 0.00 3.55
930 976 0.327924 TCACCACCACCATCACCATC 59.672 55.000 0.00 0.00 0.00 3.51
931 977 1.026182 CACCACCACCATCACCATCG 61.026 60.000 0.00 0.00 0.00 3.84
932 978 1.198094 ACCACCACCATCACCATCGA 61.198 55.000 0.00 0.00 0.00 3.59
933 979 0.181114 CCACCACCATCACCATCGAT 59.819 55.000 0.00 0.00 0.00 3.59
1043 1093 3.834799 CGAGGAGTACACCCCCGC 61.835 72.222 5.63 0.00 0.00 6.13
1105 1155 1.074775 ATCGTCCCAGGCAAGCAAA 59.925 52.632 0.00 0.00 0.00 3.68
1107 1157 2.919494 CGTCCCAGGCAAGCAAACC 61.919 63.158 0.00 0.00 0.00 3.27
1108 1158 1.832167 GTCCCAGGCAAGCAAACCA 60.832 57.895 0.00 0.00 0.00 3.67
1110 1160 0.899717 TCCCAGGCAAGCAAACCATC 60.900 55.000 0.00 0.00 0.00 3.51
1111 1161 1.593265 CCAGGCAAGCAAACCATCC 59.407 57.895 0.00 0.00 0.00 3.51
1112 1162 1.186917 CCAGGCAAGCAAACCATCCA 61.187 55.000 0.00 0.00 0.00 3.41
1117 1167 0.458889 CAAGCAAACCATCCATGCGG 60.459 55.000 0.00 0.00 44.60 5.69
1124 1174 2.475466 CCATCCATGCGGCTCACAC 61.475 63.158 0.00 0.00 0.00 3.82
1126 1176 2.970379 ATCCATGCGGCTCACACCA 61.970 57.895 0.00 0.00 0.00 4.17
1163 1225 3.444818 AACAATGGCGGGGGTGTGT 62.445 57.895 0.00 0.00 0.00 3.72
1164 1226 3.372730 CAATGGCGGGGGTGTGTG 61.373 66.667 0.00 0.00 0.00 3.82
1165 1227 3.575247 AATGGCGGGGGTGTGTGA 61.575 61.111 0.00 0.00 0.00 3.58
1166 1228 2.917897 AATGGCGGGGGTGTGTGAT 61.918 57.895 0.00 0.00 0.00 3.06
1170 1232 3.646715 CGGGGGTGTGTGATGGGT 61.647 66.667 0.00 0.00 0.00 4.51
1171 1233 2.035626 GGGGGTGTGTGATGGGTG 59.964 66.667 0.00 0.00 0.00 4.61
1172 1234 2.840753 GGGGGTGTGTGATGGGTGT 61.841 63.158 0.00 0.00 0.00 4.16
1173 1235 1.603455 GGGGTGTGTGATGGGTGTG 60.603 63.158 0.00 0.00 0.00 3.82
1174 1236 1.603455 GGGTGTGTGATGGGTGTGG 60.603 63.158 0.00 0.00 0.00 4.17
1175 1237 2.268076 GGTGTGTGATGGGTGTGGC 61.268 63.158 0.00 0.00 0.00 5.01
1176 1238 2.115052 TGTGTGATGGGTGTGGCC 59.885 61.111 0.00 0.00 0.00 5.36
1177 1239 2.436109 GTGTGATGGGTGTGGCCT 59.564 61.111 3.32 0.00 37.43 5.19
1178 1240 1.973281 GTGTGATGGGTGTGGCCTG 60.973 63.158 3.32 0.00 37.43 4.85
1179 1241 2.152729 TGTGATGGGTGTGGCCTGA 61.153 57.895 3.32 0.00 37.43 3.86
1180 1242 1.675641 GTGATGGGTGTGGCCTGAC 60.676 63.158 3.32 0.00 37.43 3.51
1181 1243 1.847506 TGATGGGTGTGGCCTGACT 60.848 57.895 3.32 0.00 37.43 3.41
1182 1244 1.078143 GATGGGTGTGGCCTGACTC 60.078 63.158 3.32 0.08 37.43 3.36
1183 1245 1.539869 ATGGGTGTGGCCTGACTCT 60.540 57.895 3.32 0.00 37.43 3.24
1184 1246 1.136329 ATGGGTGTGGCCTGACTCTT 61.136 55.000 3.32 0.00 37.43 2.85
1185 1247 1.302832 GGGTGTGGCCTGACTCTTG 60.303 63.158 3.32 0.00 37.43 3.02
1186 1248 1.754745 GGTGTGGCCTGACTCTTGA 59.245 57.895 3.32 0.00 0.00 3.02
1207 1272 1.115326 GGTTCTTGGCTGCAGGGTTT 61.115 55.000 17.12 0.00 0.00 3.27
1699 5102 2.508526 GAGACCCTGAACAAGCACAAT 58.491 47.619 0.00 0.00 0.00 2.71
1708 5120 2.034687 AAGCACAATGGAGCCGCT 59.965 55.556 0.00 0.00 33.45 5.52
1709 5121 2.338015 AAGCACAATGGAGCCGCTG 61.338 57.895 0.00 0.00 32.14 5.18
1710 5122 4.487412 GCACAATGGAGCCGCTGC 62.487 66.667 4.68 4.68 37.95 5.25
1711 5123 3.818787 CACAATGGAGCCGCTGCC 61.819 66.667 9.66 5.74 38.69 4.85
1712 5124 4.349503 ACAATGGAGCCGCTGCCA 62.350 61.111 9.66 11.17 38.69 4.92
1713 5125 3.818787 CAATGGAGCCGCTGCCAC 61.819 66.667 9.66 0.00 36.92 5.01
1807 5219 2.272146 GAGGCCATGGCGAGGAAA 59.728 61.111 29.90 0.00 43.06 3.13
1809 5221 2.361104 GGCCATGGCGAGGAAACA 60.361 61.111 29.90 0.00 43.06 2.83
1813 5225 1.243342 CCATGGCGAGGAAACAGCAA 61.243 55.000 0.00 0.00 37.88 3.91
1816 5228 0.884704 TGGCGAGGAAACAGCAAGAC 60.885 55.000 0.00 0.00 37.88 3.01
1838 5250 1.076632 GCCGAGGAGGAGGAGAAGA 60.077 63.158 0.00 0.00 45.00 2.87
1839 5251 0.684805 GCCGAGGAGGAGGAGAAGAA 60.685 60.000 0.00 0.00 45.00 2.52
1841 5253 0.744281 CGAGGAGGAGGAGAAGAAGC 59.256 60.000 0.00 0.00 0.00 3.86
1887 5299 1.760029 GATGGAGGAGGACAGGAAGAC 59.240 57.143 0.00 0.00 0.00 3.01
1913 5325 2.885861 CGGACAAGGAGACGGAGG 59.114 66.667 0.00 0.00 0.00 4.30
2098 5510 3.909312 GGCGACGAGATGTGATCG 58.091 61.111 0.00 0.00 45.54 3.69
2099 5511 1.355563 GGCGACGAGATGTGATCGA 59.644 57.895 0.00 0.00 42.76 3.59
2101 5513 1.322865 GCGACGAGATGTGATCGATC 58.677 55.000 18.72 18.72 42.76 3.69
2102 5514 1.585827 CGACGAGATGTGATCGATCG 58.414 55.000 20.03 9.36 42.76 3.69
2126 5554 2.264813 GAACAGTTGGCGCGAAGTATA 58.735 47.619 12.10 0.00 0.00 1.47
2128 5556 3.720949 ACAGTTGGCGCGAAGTATATA 57.279 42.857 12.10 0.00 0.00 0.86
2129 5557 4.252971 ACAGTTGGCGCGAAGTATATAT 57.747 40.909 12.10 0.00 0.00 0.86
2130 5558 4.628074 ACAGTTGGCGCGAAGTATATATT 58.372 39.130 12.10 0.00 0.00 1.28
2131 5559 4.684703 ACAGTTGGCGCGAAGTATATATTC 59.315 41.667 12.10 0.00 0.00 1.75
2143 5571 4.084287 AGTATATATTCGAGGCGTGGGAA 58.916 43.478 0.00 0.00 0.00 3.97
2144 5572 2.806608 TATATTCGAGGCGTGGGAAC 57.193 50.000 0.00 0.00 0.00 3.62
2151 5587 2.432628 GGCGTGGGAACGAGTGAG 60.433 66.667 1.87 0.00 34.64 3.51
2216 5711 4.093556 GTGGCTTGTTACAGATTACAGAGC 59.906 45.833 0.00 0.00 32.57 4.09
2223 5718 3.272574 ACAGATTACAGAGCCATGGTG 57.727 47.619 14.67 6.44 0.00 4.17
2336 5837 6.426980 ACAAGCATGTATGTGTATGACTTG 57.573 37.500 0.00 1.69 40.33 3.16
2337 5838 5.355071 ACAAGCATGTATGTGTATGACTTGG 59.645 40.000 17.22 7.25 39.68 3.61
2344 5845 6.636705 TGTATGTGTATGACTTGGTTACTCC 58.363 40.000 0.00 0.00 0.00 3.85
2377 5878 6.640137 GCAGACTGCAAATTTAAACTTTGAC 58.360 36.000 22.62 13.36 44.26 3.18
2381 5882 8.819974 AGACTGCAAATTTAAACTTTGACAATG 58.180 29.630 18.90 0.00 35.99 2.82
2392 5893 9.755804 TTAAACTTTGACAATGACAAATATGCA 57.244 25.926 10.85 0.00 36.79 3.96
2400 5901 9.129532 TGACAATGACAAATATGCATGGTATAA 57.870 29.630 10.16 0.00 31.56 0.98
2444 5945 9.793259 ATTCTAATGGTATTGATTCGGTATTGT 57.207 29.630 0.00 0.00 0.00 2.71
2445 5946 8.601845 TCTAATGGTATTGATTCGGTATTGTG 57.398 34.615 0.00 0.00 0.00 3.33
2447 5948 7.496529 AATGGTATTGATTCGGTATTGTGAG 57.503 36.000 0.00 0.00 0.00 3.51
2454 5955 5.487433 TGATTCGGTATTGTGAGTGTCAAT 58.513 37.500 0.00 0.00 38.72 2.57
2457 5958 6.715344 TTCGGTATTGTGAGTGTCAATAAC 57.285 37.500 0.00 0.00 40.18 1.89
2458 5959 6.032956 TCGGTATTGTGAGTGTCAATAACT 57.967 37.500 10.52 0.00 40.91 2.24
2459 5960 6.460781 TCGGTATTGTGAGTGTCAATAACTT 58.539 36.000 10.52 0.00 40.91 2.66
2486 5987 8.885494 TTTGCATAAACTTGACAAAAGCTTAT 57.115 26.923 0.00 0.00 0.00 1.73
2502 6003 7.859325 AAAGCTTATAAAGTTTGGCTCGATA 57.141 32.000 0.00 0.00 31.98 2.92
2509 6010 2.778299 AGTTTGGCTCGATACAAAGCA 58.222 42.857 13.05 0.00 40.36 3.91
2542 6110 9.681062 CAAAGTAAATAAAATGGAGGGAGTAGA 57.319 33.333 0.00 0.00 0.00 2.59
2548 6116 4.939052 AAATGGAGGGAGTAGATACACG 57.061 45.455 0.00 0.00 0.00 4.49
2578 6146 3.963383 ACGTTGAAAAGGCTTGTGTAG 57.037 42.857 0.00 0.00 34.48 2.74
2591 6159 3.610114 GCTTGTGTAGGTTTGCATCTGTG 60.610 47.826 0.00 0.00 0.00 3.66
2616 6184 4.814771 AGCAAAAACTAGCAACGAGTAGTT 59.185 37.500 0.00 0.00 45.45 2.24
2674 6243 3.003378 GCGACTAACAAATAGGCAATCCC 59.997 47.826 0.00 0.00 39.93 3.85
2675 6244 4.196193 CGACTAACAAATAGGCAATCCCA 58.804 43.478 0.00 0.00 39.93 4.37
2684 6253 7.209475 ACAAATAGGCAATCCCATTATTTTCG 58.791 34.615 0.00 0.00 35.39 3.46
2690 6259 4.869861 GCAATCCCATTATTTTCGCAAACT 59.130 37.500 0.00 0.00 0.00 2.66
2700 6269 9.467990 CATTATTTTCGCAAACTTTTGATGATG 57.532 29.630 5.87 0.00 40.55 3.07
2709 6278 7.218773 CGCAAACTTTTGATGATGATCGTAATT 59.781 33.333 5.87 0.00 40.55 1.40
2712 6281 8.511604 AACTTTTGATGATGATCGTAATTCCT 57.488 30.769 0.00 0.00 0.00 3.36
2713 6282 7.923888 ACTTTTGATGATGATCGTAATTCCTG 58.076 34.615 0.00 0.00 0.00 3.86
2722 6307 5.647589 TGATCGTAATTCCTGTCACACTAC 58.352 41.667 0.00 0.00 0.00 2.73
2734 6319 5.362105 TGTCACACTACTGTAAAAAGGGT 57.638 39.130 0.00 0.00 0.00 4.34
2742 6327 6.488683 CACTACTGTAAAAAGGGTGGAATTCA 59.511 38.462 7.93 0.00 0.00 2.57
2768 6353 3.081061 GACCATGAAACCTACATGTGCA 58.919 45.455 9.11 0.00 42.16 4.57
2778 6363 0.844661 TACATGTGCAGGAAGGGGGT 60.845 55.000 9.11 0.00 0.00 4.95
2781 6366 1.434513 ATGTGCAGGAAGGGGGTCAA 61.435 55.000 0.00 0.00 0.00 3.18
2789 6374 1.152096 AAGGGGGTCAAGGTCTCGT 60.152 57.895 0.00 0.00 0.00 4.18
2800 6385 1.512310 GGTCTCGTCGTTGCTCTCG 60.512 63.158 0.00 0.00 0.00 4.04
2805 6390 0.385598 TCGTCGTTGCTCTCGTTGAG 60.386 55.000 0.00 4.32 45.33 3.02
2813 6398 0.108424 GCTCTCGTTGAGTCCATGCT 60.108 55.000 9.21 0.00 44.41 3.79
2817 6402 2.234661 TCTCGTTGAGTCCATGCTTGAT 59.765 45.455 0.22 0.00 0.00 2.57
2829 6414 2.636647 TGCTTGATTGTGGTGAGTGA 57.363 45.000 0.00 0.00 0.00 3.41
2842 6427 3.244387 TGGTGAGTGATGGTTCAATTCGA 60.244 43.478 0.00 0.00 32.48 3.71
2854 6439 4.142600 GGTTCAATTCGACAGATTTGGGAG 60.143 45.833 0.00 0.00 37.95 4.30
2862 6447 3.681897 CGACAGATTTGGGAGAGAAGTTG 59.318 47.826 0.00 0.00 0.00 3.16
2875 6460 0.962855 GAAGTTGGAGGAGCAAGGCC 60.963 60.000 0.00 0.00 0.00 5.19
2911 6496 0.833949 GGGACAGAGGTTCCTCCATC 59.166 60.000 14.40 11.89 39.86 3.51
2947 6532 5.951148 TCATGTGCTTTCCTCCATCATTTTA 59.049 36.000 0.00 0.00 0.00 1.52
2951 6536 6.038161 TGTGCTTTCCTCCATCATTTTATACG 59.962 38.462 0.00 0.00 0.00 3.06
2959 6544 6.183360 CCTCCATCATTTTATACGTGTTGCTT 60.183 38.462 0.00 0.00 0.00 3.91
2985 6570 7.336931 TCTTTCTTCTCCATAACTAACAATGGC 59.663 37.037 0.00 0.00 42.08 4.40
3003 6588 0.109132 GCAAGCTCATTTGGGGTTCG 60.109 55.000 0.00 0.00 0.00 3.95
3014 6599 1.324740 TGGGGTTCGGGTCGAGTATG 61.325 60.000 0.00 0.00 37.14 2.39
3018 6603 1.406539 GGTTCGGGTCGAGTATGCTAA 59.593 52.381 0.00 0.00 37.14 3.09
3024 6609 3.365465 CGGGTCGAGTATGCTAAGATGAG 60.365 52.174 0.00 0.00 0.00 2.90
3025 6610 3.821600 GGGTCGAGTATGCTAAGATGAGA 59.178 47.826 0.00 0.00 0.00 3.27
3026 6611 4.320641 GGGTCGAGTATGCTAAGATGAGAC 60.321 50.000 0.00 0.00 0.00 3.36
3027 6612 4.276183 GGTCGAGTATGCTAAGATGAGACA 59.724 45.833 0.00 0.00 0.00 3.41
3028 6613 5.048364 GGTCGAGTATGCTAAGATGAGACAT 60.048 44.000 0.00 0.00 0.00 3.06
3029 6614 5.855925 GTCGAGTATGCTAAGATGAGACATG 59.144 44.000 0.00 0.00 0.00 3.21
3030 6615 5.765182 TCGAGTATGCTAAGATGAGACATGA 59.235 40.000 0.00 0.00 0.00 3.07
3031 6616 6.072783 TCGAGTATGCTAAGATGAGACATGAG 60.073 42.308 0.00 0.00 0.00 2.90
3036 6621 3.321682 GCTAAGATGAGACATGAGAGGCT 59.678 47.826 0.00 0.00 0.00 4.58
3048 6633 0.107459 GAGAGGCTTGGACATGACCC 60.107 60.000 11.80 6.84 0.00 4.46
3049 6634 0.842030 AGAGGCTTGGACATGACCCA 60.842 55.000 11.80 9.38 0.00 4.51
3050 6635 0.257039 GAGGCTTGGACATGACCCAT 59.743 55.000 11.80 0.00 33.04 4.00
3051 6636 0.033796 AGGCTTGGACATGACCCATG 60.034 55.000 11.80 13.94 46.18 3.66
3052 6637 0.034186 GGCTTGGACATGACCCATGA 60.034 55.000 20.34 6.21 43.81 3.07
3053 6638 1.098050 GCTTGGACATGACCCATGAC 58.902 55.000 20.34 7.30 43.81 3.06
3058 6643 1.027357 GACATGACCCATGACCATGC 58.973 55.000 13.22 9.44 43.81 4.06
3071 6656 1.904771 CCATGCCGGTGAGTAAGGA 59.095 57.895 1.90 0.00 0.00 3.36
3072 6657 0.462047 CCATGCCGGTGAGTAAGGAC 60.462 60.000 1.90 0.00 0.00 3.85
3073 6658 0.249120 CATGCCGGTGAGTAAGGACA 59.751 55.000 1.90 0.00 0.00 4.02
3095 6680 4.888823 CACCTAGTAGAAGGAGGGTACTTC 59.111 50.000 0.00 0.00 43.56 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.405892 ACAGTGAAATTGTTCGCAGC 57.594 45.000 0.00 0.00 45.11 5.25
71 76 1.667177 CGATGTCACACGCTCTGAACT 60.667 52.381 0.00 0.00 0.00 3.01
72 77 0.710567 CGATGTCACACGCTCTGAAC 59.289 55.000 0.00 0.00 0.00 3.18
73 78 0.313987 ACGATGTCACACGCTCTGAA 59.686 50.000 0.00 0.00 0.00 3.02
74 79 0.313987 AACGATGTCACACGCTCTGA 59.686 50.000 0.00 0.00 0.00 3.27
75 80 1.139989 AAACGATGTCACACGCTCTG 58.860 50.000 0.00 0.00 0.00 3.35
90 96 8.819152 ACAATTTTTGATACAAAAGCAAAACG 57.181 26.923 9.09 0.00 40.12 3.60
163 169 4.639334 AGAAAGACAGCATATGCATCGAT 58.361 39.130 28.62 17.89 45.16 3.59
165 171 4.808077 AAGAAAGACAGCATATGCATCG 57.192 40.909 28.62 18.31 45.16 3.84
184 194 4.096311 CGCTTCATCTGATTCAGCAAAAG 58.904 43.478 8.89 11.59 0.00 2.27
245 255 8.615225 ATGCTAGTACATCTTAGCAAGTAGGCT 61.615 40.741 15.89 0.00 46.76 4.58
246 256 5.221263 TGCTAGTACATCTTAGCAAGTAGGC 60.221 44.000 11.05 0.00 41.87 3.93
250 260 7.439655 GCTTAATGCTAGTACATCTTAGCAAGT 59.560 37.037 15.89 10.78 46.76 3.16
291 301 4.569943 AGGCAATGTGATGTACCGATATC 58.430 43.478 0.00 0.00 0.00 1.63
305 315 3.627395 TCCGTTCATTCTAGGCAATGT 57.373 42.857 4.57 0.00 35.56 2.71
316 327 0.881159 TTGCGACCGTTCCGTTCATT 60.881 50.000 0.00 0.00 0.00 2.57
319 330 1.083209 GTTTGCGACCGTTCCGTTC 60.083 57.895 0.00 0.00 0.00 3.95
320 331 2.536673 GGTTTGCGACCGTTCCGTT 61.537 57.895 0.00 0.00 39.00 4.44
321 332 2.968697 GGTTTGCGACCGTTCCGT 60.969 61.111 0.00 0.00 39.00 4.69
329 340 1.485943 GACTTCGTCGGTTTGCGAC 59.514 57.895 0.00 0.00 36.82 5.19
344 355 3.005578 GGTCTGGTTCTAACTTGTCGACT 59.994 47.826 17.92 0.00 0.00 4.18
345 356 3.315418 GGTCTGGTTCTAACTTGTCGAC 58.685 50.000 9.11 9.11 0.00 4.20
347 358 2.036733 TGGGTCTGGTTCTAACTTGTCG 59.963 50.000 0.00 0.00 0.00 4.35
348 359 3.764237 TGGGTCTGGTTCTAACTTGTC 57.236 47.619 0.00 0.00 0.00 3.18
360 371 1.984570 TCGAGGCTCTTGGGTCTGG 60.985 63.158 13.50 0.00 0.00 3.86
363 374 0.034896 TTTGTCGAGGCTCTTGGGTC 59.965 55.000 13.50 0.00 0.00 4.46
364 375 0.693049 ATTTGTCGAGGCTCTTGGGT 59.307 50.000 13.50 0.00 0.00 4.51
366 377 5.371115 TTTTAATTTGTCGAGGCTCTTGG 57.629 39.130 13.50 0.00 0.00 3.61
372 383 6.842163 TCTTGAGATTTTAATTTGTCGAGGC 58.158 36.000 0.00 0.00 0.00 4.70
386 405 5.478332 GTGATCTTTGGGGTTCTTGAGATTT 59.522 40.000 0.00 0.00 0.00 2.17
398 417 3.084786 GTTCTTCAGGTGATCTTTGGGG 58.915 50.000 0.00 0.00 0.00 4.96
427 446 8.229811 CAGATTTTTCAAATGTCGTATGAGTGA 58.770 33.333 0.00 0.00 0.00 3.41
465 491 4.742438 TTTGACACGCCTATCTTTGAAC 57.258 40.909 0.00 0.00 0.00 3.18
479 505 8.207906 GCTATTCGACTTTTCAAATTTTGACAC 58.792 33.333 11.30 1.95 39.87 3.67
481 508 8.280909 TGCTATTCGACTTTTCAAATTTTGAC 57.719 30.769 11.30 0.00 39.87 3.18
520 550 6.910290 ACAGGGTAGGTATTATTTAGGACCAA 59.090 38.462 0.00 0.00 34.18 3.67
544 574 6.128200 TGCTTGATTGATGATGAGTGTGTAAC 60.128 38.462 0.00 0.00 37.35 2.50
548 578 4.957759 TGCTTGATTGATGATGAGTGTG 57.042 40.909 0.00 0.00 0.00 3.82
559 596 7.546358 TCTCTTTTTGTTTCTTGCTTGATTGA 58.454 30.769 0.00 0.00 0.00 2.57
560 597 7.703621 TCTCTCTTTTTGTTTCTTGCTTGATTG 59.296 33.333 0.00 0.00 0.00 2.67
561 598 7.775120 TCTCTCTTTTTGTTTCTTGCTTGATT 58.225 30.769 0.00 0.00 0.00 2.57
567 604 5.520288 GGGTTTCTCTCTTTTTGTTTCTTGC 59.480 40.000 0.00 0.00 0.00 4.01
575 612 3.068165 GGGTGTGGGTTTCTCTCTTTTTG 59.932 47.826 0.00 0.00 0.00 2.44
608 645 1.300963 GCTGGTCCATGCCTCAAGA 59.699 57.895 0.00 0.00 0.00 3.02
617 654 2.693864 CAGGAGGGGCTGGTCCAT 60.694 66.667 0.00 0.00 35.02 3.41
625 662 4.299796 TGGGTTTGCAGGAGGGGC 62.300 66.667 0.00 0.00 0.00 5.80
628 665 1.252904 CCATGTGGGTTTGCAGGAGG 61.253 60.000 0.00 0.00 0.00 4.30
631 668 0.827089 TGTCCATGTGGGTTTGCAGG 60.827 55.000 0.00 0.00 38.11 4.85
639 676 3.368248 AGAAAATCCATGTCCATGTGGG 58.632 45.455 6.53 0.00 37.11 4.61
664 706 2.751357 CTTGGTTTTCGGCCGGGGTA 62.751 60.000 27.83 1.61 0.00 3.69
923 969 0.249447 GCGGTGATGATCGATGGTGA 60.249 55.000 0.54 0.00 0.00 4.02
930 976 0.659427 AATGCTTGCGGTGATGATCG 59.341 50.000 0.00 0.00 0.00 3.69
931 977 1.333524 CGAATGCTTGCGGTGATGATC 60.334 52.381 0.00 0.00 0.00 2.92
932 978 0.659427 CGAATGCTTGCGGTGATGAT 59.341 50.000 0.00 0.00 0.00 2.45
933 979 0.673333 ACGAATGCTTGCGGTGATGA 60.673 50.000 4.83 0.00 0.00 2.92
1105 1155 2.124570 GTGAGCCGCATGGATGGT 60.125 61.111 0.00 0.00 37.49 3.55
1107 1157 2.475466 GGTGTGAGCCGCATGGATG 61.475 63.158 0.00 0.00 37.49 3.51
1108 1158 2.124570 GGTGTGAGCCGCATGGAT 60.125 61.111 0.00 0.00 37.49 3.41
1110 1160 0.535780 ATATGGTGTGAGCCGCATGG 60.536 55.000 0.00 0.00 38.77 3.66
1111 1161 0.589708 CATATGGTGTGAGCCGCATG 59.410 55.000 0.00 0.00 0.00 4.06
1112 1162 0.535780 CCATATGGTGTGAGCCGCAT 60.536 55.000 14.09 0.00 0.00 4.73
1124 1174 4.356405 TGGCTCATCAGTAACCATATGG 57.644 45.455 20.68 20.68 42.17 2.74
1126 1176 5.372343 TGTTGGCTCATCAGTAACCATAT 57.628 39.130 0.00 0.00 0.00 1.78
1144 1206 2.600173 ACACCCCCGCCATTGTTG 60.600 61.111 0.00 0.00 0.00 3.33
1157 1219 2.268076 GCCACACCCATCACACACC 61.268 63.158 0.00 0.00 0.00 4.16
1163 1225 1.841302 GAGTCAGGCCACACCCATCA 61.841 60.000 5.01 0.00 40.58 3.07
1164 1226 1.078143 GAGTCAGGCCACACCCATC 60.078 63.158 5.01 0.00 40.58 3.51
1165 1227 1.136329 AAGAGTCAGGCCACACCCAT 61.136 55.000 5.01 0.00 40.58 4.00
1166 1228 1.770110 AAGAGTCAGGCCACACCCA 60.770 57.895 5.01 0.00 40.58 4.51
1168 1230 0.321122 CTCAAGAGTCAGGCCACACC 60.321 60.000 5.01 0.00 39.61 4.16
1170 1232 1.483595 CCCTCAAGAGTCAGGCCACA 61.484 60.000 5.01 0.00 0.00 4.17
1171 1233 1.298014 CCCTCAAGAGTCAGGCCAC 59.702 63.158 5.01 0.00 0.00 5.01
1172 1234 0.768221 AACCCTCAAGAGTCAGGCCA 60.768 55.000 5.01 0.00 0.00 5.36
1173 1235 0.035915 GAACCCTCAAGAGTCAGGCC 60.036 60.000 0.00 0.00 0.00 5.19
1174 1236 0.980423 AGAACCCTCAAGAGTCAGGC 59.020 55.000 0.00 0.00 0.00 4.85
1175 1237 2.289945 CCAAGAACCCTCAAGAGTCAGG 60.290 54.545 0.00 0.00 0.00 3.86
1176 1238 2.873649 GCCAAGAACCCTCAAGAGTCAG 60.874 54.545 0.00 0.00 0.00 3.51
1177 1239 1.072331 GCCAAGAACCCTCAAGAGTCA 59.928 52.381 0.00 0.00 0.00 3.41
1178 1240 1.349357 AGCCAAGAACCCTCAAGAGTC 59.651 52.381 0.00 0.00 0.00 3.36
1179 1241 1.072965 CAGCCAAGAACCCTCAAGAGT 59.927 52.381 0.00 0.00 0.00 3.24
1180 1242 1.818642 CAGCCAAGAACCCTCAAGAG 58.181 55.000 0.00 0.00 0.00 2.85
1181 1243 0.250901 GCAGCCAAGAACCCTCAAGA 60.251 55.000 0.00 0.00 0.00 3.02
1182 1244 0.538057 TGCAGCCAAGAACCCTCAAG 60.538 55.000 0.00 0.00 0.00 3.02
1183 1245 0.538057 CTGCAGCCAAGAACCCTCAA 60.538 55.000 0.00 0.00 0.00 3.02
1184 1246 1.073722 CTGCAGCCAAGAACCCTCA 59.926 57.895 0.00 0.00 0.00 3.86
1185 1247 1.676967 CCTGCAGCCAAGAACCCTC 60.677 63.158 8.66 0.00 0.00 4.30
1186 1248 2.437897 CCTGCAGCCAAGAACCCT 59.562 61.111 8.66 0.00 0.00 4.34
1207 1272 2.091055 CACCCTGATCTCCTCCCTCTTA 60.091 54.545 0.00 0.00 0.00 2.10
1838 5250 1.764054 CCTCCCTCTCCATCCGCTT 60.764 63.158 0.00 0.00 0.00 4.68
1839 5251 2.123077 CCTCCCTCTCCATCCGCT 60.123 66.667 0.00 0.00 0.00 5.52
1841 5253 3.610669 CGCCTCCCTCTCCATCCG 61.611 72.222 0.00 0.00 0.00 4.18
1913 5325 2.263741 GCGCCATGTCCATCATCCC 61.264 63.158 0.00 0.00 34.09 3.85
2098 5510 0.572590 CGCCAACTGTTCGATCGATC 59.427 55.000 20.18 18.57 0.00 3.69
2099 5511 1.421410 GCGCCAACTGTTCGATCGAT 61.421 55.000 20.18 0.00 0.00 3.59
2101 5513 2.395690 GCGCCAACTGTTCGATCG 59.604 61.111 9.36 9.36 0.00 3.69
2102 5514 1.623081 TTCGCGCCAACTGTTCGATC 61.623 55.000 0.00 0.00 0.00 3.69
2105 5533 1.279527 TACTTCGCGCCAACTGTTCG 61.280 55.000 0.00 0.00 0.00 3.95
2106 5534 1.076332 ATACTTCGCGCCAACTGTTC 58.924 50.000 0.00 0.00 0.00 3.18
2108 5536 2.596904 ATATACTTCGCGCCAACTGT 57.403 45.000 0.00 0.00 0.00 3.55
2112 5540 4.163458 TCGAATATATACTTCGCGCCAA 57.837 40.909 0.00 0.00 43.86 4.52
2116 5544 2.776765 CGCCTCGAATATATACTTCGCG 59.223 50.000 0.00 0.00 43.86 5.87
2126 5554 0.249322 CGTTCCCACGCCTCGAATAT 60.249 55.000 0.00 0.00 40.18 1.28
2128 5556 2.125673 CGTTCCCACGCCTCGAAT 60.126 61.111 0.00 0.00 40.18 3.34
2129 5557 3.277211 CTCGTTCCCACGCCTCGAA 62.277 63.158 0.00 0.00 46.70 3.71
2130 5558 3.744719 CTCGTTCCCACGCCTCGA 61.745 66.667 0.00 0.00 46.70 4.04
2131 5559 4.052229 ACTCGTTCCCACGCCTCG 62.052 66.667 0.00 0.00 46.70 4.63
2140 5568 3.119919 ACGTATGAACTCTCACTCGTTCC 60.120 47.826 0.00 0.00 39.52 3.62
2143 5571 2.812591 ACACGTATGAACTCTCACTCGT 59.187 45.455 0.00 0.00 41.59 4.18
2144 5572 3.473093 ACACGTATGAACTCTCACTCG 57.527 47.619 0.00 0.00 37.17 4.18
2151 5587 6.599437 ACTTGCATTTTACACGTATGAACTC 58.401 36.000 0.00 0.00 0.00 3.01
2182 5677 7.109501 TCTGTAACAAGCCACAATACATACAT 58.890 34.615 0.00 0.00 0.00 2.29
2186 5681 7.609918 TGTAATCTGTAACAAGCCACAATACAT 59.390 33.333 0.00 0.00 0.00 2.29
2192 5687 5.222079 TCTGTAATCTGTAACAAGCCACA 57.778 39.130 0.00 0.00 0.00 4.17
2197 5692 5.295292 CCATGGCTCTGTAATCTGTAACAAG 59.705 44.000 0.00 0.00 0.00 3.16
2216 5711 2.528564 AGTTTGATCAACCCACCATGG 58.471 47.619 11.19 11.19 35.77 3.66
2223 5718 9.487790 TTTTATTTCATCAAGTTTGATCAACCC 57.512 29.630 7.89 1.74 45.62 4.11
2253 5748 5.126396 AGAAAGTTAAAGGCTTGTGCATC 57.874 39.130 0.00 0.00 41.91 3.91
2336 5837 1.429423 GCATGCGCAAGGAGTAACC 59.571 57.895 17.11 0.00 45.13 2.85
2375 5876 9.964303 TTTATACCATGCATATTTGTCATTGTC 57.036 29.630 0.00 0.00 0.00 3.18
2413 5914 7.607991 ACCGAATCAATACCATTAGAATCATCC 59.392 37.037 0.00 0.00 0.00 3.51
2418 5919 9.793259 ACAATACCGAATCAATACCATTAGAAT 57.207 29.630 0.00 0.00 0.00 2.40
2432 5933 7.277981 AGTTATTGACACTCACAATACCGAATC 59.722 37.037 0.00 0.00 39.08 2.52
2459 5960 7.608308 AGCTTTTGTCAAGTTTATGCAAAAA 57.392 28.000 0.00 0.00 36.66 1.94
2477 5978 6.569179 TCGAGCCAAACTTTATAAGCTTTT 57.431 33.333 3.20 0.00 0.00 2.27
2482 5983 7.640240 GCTTTGTATCGAGCCAAACTTTATAAG 59.360 37.037 7.88 0.00 32.80 1.73
2486 5987 4.757657 TGCTTTGTATCGAGCCAAACTTTA 59.242 37.500 7.88 0.00 38.11 1.85
2494 5995 4.222114 GCATATTTGCTTTGTATCGAGCC 58.778 43.478 0.35 0.00 45.77 4.70
2530 6031 3.377253 AACGTGTATCTACTCCCTCCA 57.623 47.619 0.00 0.00 0.00 3.86
2531 6032 4.514816 GTCTAACGTGTATCTACTCCCTCC 59.485 50.000 0.00 0.00 0.00 4.30
2534 6035 7.413644 GTTAAGTCTAACGTGTATCTACTCCC 58.586 42.308 0.00 0.00 0.00 4.30
2548 6116 6.296365 AGCCTTTTCAACGTTAAGTCTAAC 57.704 37.500 0.00 0.00 35.08 2.34
2560 6128 4.649088 AACCTACACAAGCCTTTTCAAC 57.351 40.909 0.00 0.00 0.00 3.18
2568 6136 2.095059 CAGATGCAAACCTACACAAGCC 60.095 50.000 0.00 0.00 0.00 4.35
2578 6146 0.961019 TTGCTCCACAGATGCAAACC 59.039 50.000 0.00 0.00 42.65 3.27
2591 6159 2.548480 ACTCGTTGCTAGTTTTTGCTCC 59.452 45.455 0.00 0.00 0.00 4.70
2631 6199 4.202040 CGCCTGGATATCTTTTTCATGCAA 60.202 41.667 0.00 0.00 0.00 4.08
2643 6211 5.869888 CCTATTTGTTAGTCGCCTGGATATC 59.130 44.000 0.00 0.00 0.00 1.63
2644 6212 5.794894 CCTATTTGTTAGTCGCCTGGATAT 58.205 41.667 0.00 0.00 0.00 1.63
2645 6213 4.502604 GCCTATTTGTTAGTCGCCTGGATA 60.503 45.833 0.00 0.00 0.00 2.59
2674 6243 9.467990 CATCATCAAAAGTTTGCGAAAATAATG 57.532 29.630 0.00 0.00 38.05 1.90
2675 6244 9.421806 TCATCATCAAAAGTTTGCGAAAATAAT 57.578 25.926 0.00 0.00 38.05 1.28
2684 6253 7.975866 ATTACGATCATCATCAAAAGTTTGC 57.024 32.000 0.00 0.00 38.05 3.68
2690 6259 7.552330 TGACAGGAATTACGATCATCATCAAAA 59.448 33.333 0.00 0.00 0.00 2.44
2700 6269 5.744345 CAGTAGTGTGACAGGAATTACGATC 59.256 44.000 0.00 0.00 0.00 3.69
2709 6278 5.454187 CCCTTTTTACAGTAGTGTGACAGGA 60.454 44.000 13.66 0.00 37.52 3.86
2712 6281 5.120399 CACCCTTTTTACAGTAGTGTGACA 58.880 41.667 13.66 0.00 37.52 3.58
2713 6282 4.514066 CCACCCTTTTTACAGTAGTGTGAC 59.486 45.833 13.66 0.00 37.52 3.67
2722 6307 5.782893 TGTGAATTCCACCCTTTTTACAG 57.217 39.130 2.27 0.00 45.09 2.74
2734 6319 3.625649 TCATGGTCGATGTGAATTCCA 57.374 42.857 2.27 0.97 33.29 3.53
2742 6327 3.973206 TGTAGGTTTCATGGTCGATGT 57.027 42.857 0.00 0.00 33.29 3.06
2748 6333 3.084039 CTGCACATGTAGGTTTCATGGT 58.916 45.455 0.00 0.00 44.57 3.55
2752 6337 3.411446 CTTCCTGCACATGTAGGTTTCA 58.589 45.455 14.73 0.00 46.35 2.69
2768 6353 0.547954 GAGACCTTGACCCCCTTCCT 60.548 60.000 0.00 0.00 0.00 3.36
2778 6363 0.039437 GAGCAACGACGAGACCTTGA 60.039 55.000 0.00 0.00 0.00 3.02
2781 6366 1.877367 GAGAGCAACGACGAGACCT 59.123 57.895 0.00 0.00 0.00 3.85
2800 6385 3.366679 CCACAATCAAGCATGGACTCAAC 60.367 47.826 0.00 0.00 33.80 3.18
2805 6390 2.161855 TCACCACAATCAAGCATGGAC 58.838 47.619 0.00 0.00 36.04 4.02
2813 6398 3.507162 ACCATCACTCACCACAATCAA 57.493 42.857 0.00 0.00 0.00 2.57
2817 6402 3.289407 TTGAACCATCACTCACCACAA 57.711 42.857 0.00 0.00 34.61 3.33
2829 6414 4.158394 CCCAAATCTGTCGAATTGAACCAT 59.842 41.667 0.00 0.00 32.90 3.55
2842 6427 3.652869 TCCAACTTCTCTCCCAAATCTGT 59.347 43.478 0.00 0.00 0.00 3.41
2854 6439 1.948144 GCCTTGCTCCTCCAACTTCTC 60.948 57.143 0.00 0.00 0.00 2.87
2862 6447 2.850828 AATGCTGGCCTTGCTCCTCC 62.851 60.000 19.10 0.00 0.00 4.30
2875 6460 2.094854 GTCCCAAAGAGCTGAAATGCTG 60.095 50.000 0.00 0.00 44.17 4.41
2911 6496 6.071728 AGGAAAGCACATGAACATAAGAAAGG 60.072 38.462 0.00 0.00 0.00 3.11
2947 6532 4.691216 GGAGAAGAAAGAAGCAACACGTAT 59.309 41.667 0.00 0.00 0.00 3.06
2951 6536 6.205658 AGTTATGGAGAAGAAAGAAGCAACAC 59.794 38.462 0.00 0.00 0.00 3.32
2959 6544 7.336931 GCCATTGTTAGTTATGGAGAAGAAAGA 59.663 37.037 5.34 0.00 43.25 2.52
2985 6570 0.527565 CCGAACCCCAAATGAGCTTG 59.472 55.000 0.00 0.00 0.00 4.01
3003 6588 3.821600 TCTCATCTTAGCATACTCGACCC 59.178 47.826 0.00 0.00 0.00 4.46
3014 6599 3.321682 AGCCTCTCATGTCTCATCTTAGC 59.678 47.826 0.00 0.00 0.00 3.09
3018 6603 2.435069 CCAAGCCTCTCATGTCTCATCT 59.565 50.000 0.00 0.00 0.00 2.90
3024 6609 2.093288 TCATGTCCAAGCCTCTCATGTC 60.093 50.000 0.00 0.00 37.64 3.06
3025 6610 1.911357 TCATGTCCAAGCCTCTCATGT 59.089 47.619 0.00 0.00 37.64 3.21
3026 6611 2.286872 GTCATGTCCAAGCCTCTCATG 58.713 52.381 0.00 0.00 37.71 3.07
3027 6612 1.211457 GGTCATGTCCAAGCCTCTCAT 59.789 52.381 3.91 0.00 0.00 2.90
3028 6613 0.615331 GGTCATGTCCAAGCCTCTCA 59.385 55.000 3.91 0.00 0.00 3.27
3029 6614 0.107459 GGGTCATGTCCAAGCCTCTC 60.107 60.000 11.23 0.00 0.00 3.20
3030 6615 0.842030 TGGGTCATGTCCAAGCCTCT 60.842 55.000 11.23 0.00 34.12 3.69
3031 6616 0.257039 ATGGGTCATGTCCAAGCCTC 59.743 55.000 11.23 0.00 37.87 4.70
3036 6621 3.976704 GGTCATGGGTCATGTCCAA 57.023 52.632 11.23 0.00 44.94 3.53
3053 6638 0.462047 GTCCTTACTCACCGGCATGG 60.462 60.000 0.00 0.00 46.41 3.66
3054 6639 0.249120 TGTCCTTACTCACCGGCATG 59.751 55.000 0.00 0.00 0.00 4.06
3071 6656 3.857420 AGTACCCTCCTTCTACTAGGTGT 59.143 47.826 0.00 0.00 36.63 4.16
3072 6657 4.523168 AGTACCCTCCTTCTACTAGGTG 57.477 50.000 0.00 0.00 36.63 4.00
3073 6658 5.128033 GAAGTACCCTCCTTCTACTAGGT 57.872 47.826 0.00 0.00 36.29 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.