Multiple sequence alignment - TraesCS4B01G014800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G014800 chr4B 100.000 2052 0 0 1 2052 10595239 10593188 0.000000e+00 3790.0
1 TraesCS4B01G014800 chr4B 100.000 378 0 0 2422 2799 10592818 10592441 0.000000e+00 699.0
2 TraesCS4B01G014800 chr4D 86.281 1538 85 31 615 2052 6039542 6038031 0.000000e+00 1555.0
3 TraesCS4B01G014800 chr4D 98.677 378 5 0 2422 2799 6038005 6037628 0.000000e+00 671.0
4 TraesCS4B01G014800 chr4A 84.913 1498 104 51 613 2050 597676653 597678088 0.000000e+00 1402.0
5 TraesCS4B01G014800 chr4A 97.500 360 9 0 2440 2799 597678150 597678509 1.420000e-172 616.0
6 TraesCS4B01G014800 chr6B 80.226 708 67 35 627 1293 225626319 225625644 5.460000e-127 464.0
7 TraesCS4B01G014800 chr6B 77.387 199 35 6 336 534 252842531 252842719 2.950000e-20 110.0
8 TraesCS4B01G014800 chr6B 84.034 119 9 8 417 534 705935548 705935657 3.810000e-19 106.0
9 TraesCS4B01G014800 chr5B 90.379 343 33 0 2457 2799 21181194 21181536 4.250000e-123 451.0
10 TraesCS4B01G014800 chr5B 74.874 199 40 7 336 534 707180974 707180786 6.430000e-12 82.4
11 TraesCS4B01G014800 chr5D 88.047 343 41 0 2457 2799 28666921 28667263 9.330000e-110 407.0
12 TraesCS4B01G014800 chr2B 79.044 272 42 11 266 534 90056841 90057100 3.710000e-39 172.0
13 TraesCS4B01G014800 chr3D 87.162 148 17 2 1 146 4439139 4439286 1.720000e-37 167.0
14 TraesCS4B01G014800 chr3A 82.828 198 23 5 1 195 10219938 10220127 1.720000e-37 167.0
15 TraesCS4B01G014800 chr3A 83.784 74 10 1 461 534 727203379 727203450 5.000000e-08 69.4
16 TraesCS4B01G014800 chr5A 83.478 115 12 6 421 534 653394315 653394423 1.770000e-17 100.0
17 TraesCS4B01G014800 chr5A 83.784 74 10 2 461 534 653393144 653393073 5.000000e-08 69.4
18 TraesCS4B01G014800 chr7A 85.526 76 7 4 460 534 665371258 665371330 2.990000e-10 76.8
19 TraesCS4B01G014800 chr1B 84.000 75 10 2 460 534 58758323 58758251 1.390000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G014800 chr4B 10592441 10595239 2798 True 2244.5 3790 100.0000 1 2799 2 chr4B.!!$R1 2798
1 TraesCS4B01G014800 chr4D 6037628 6039542 1914 True 1113.0 1555 92.4790 615 2799 2 chr4D.!!$R1 2184
2 TraesCS4B01G014800 chr4A 597676653 597678509 1856 False 1009.0 1402 91.2065 613 2799 2 chr4A.!!$F1 2186
3 TraesCS4B01G014800 chr6B 225625644 225626319 675 True 464.0 464 80.2260 627 1293 1 chr6B.!!$R1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 369 0.105593 CCAGATGGTCCTGACGGATG 59.894 60.0 0.0 0.0 42.43 3.51 F
1648 1742 0.178975 AGATACAGGCGGAGGAGGAG 60.179 60.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1678 1772 0.034756 TCTTGTCACCATCACCACCG 59.965 55.000 0.00 0.0 0.00 4.94 R
2733 2905 2.230940 CGCCGACGTCATCACCATC 61.231 63.158 17.16 0.0 33.53 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.323477 CGGTCGGGGCAAACAGGA 62.323 66.667 0.00 0.00 0.00 3.86
43 44 2.355115 GGTCGGGGCAAACAGGAT 59.645 61.111 0.00 0.00 0.00 3.24
44 45 1.749258 GGTCGGGGCAAACAGGATC 60.749 63.158 0.00 0.00 0.00 3.36
45 46 1.299976 GTCGGGGCAAACAGGATCT 59.700 57.895 0.00 0.00 0.00 2.75
46 47 0.744771 GTCGGGGCAAACAGGATCTC 60.745 60.000 0.00 0.00 0.00 2.75
47 48 1.815421 CGGGGCAAACAGGATCTCG 60.815 63.158 0.00 0.00 0.00 4.04
48 49 2.115291 GGGGCAAACAGGATCTCGC 61.115 63.158 0.00 0.00 0.00 5.03
49 50 2.115291 GGGCAAACAGGATCTCGCC 61.115 63.158 0.00 0.00 38.85 5.54
50 51 2.464459 GGCAAACAGGATCTCGCCG 61.464 63.158 0.00 0.00 0.00 6.46
51 52 1.447838 GCAAACAGGATCTCGCCGA 60.448 57.895 0.00 0.00 0.00 5.54
52 53 1.424493 GCAAACAGGATCTCGCCGAG 61.424 60.000 8.05 8.05 0.00 4.63
53 54 1.153549 AAACAGGATCTCGCCGAGC 60.154 57.895 9.77 0.00 0.00 5.03
54 55 1.608717 AAACAGGATCTCGCCGAGCT 61.609 55.000 9.77 0.00 0.00 4.09
55 56 2.010582 AACAGGATCTCGCCGAGCTC 62.011 60.000 9.77 9.55 0.00 4.09
56 57 3.283684 AGGATCTCGCCGAGCTCG 61.284 66.667 29.06 29.06 39.44 5.03
57 58 3.280634 GGATCTCGCCGAGCTCGA 61.281 66.667 36.59 17.43 43.02 4.04
65 66 4.598894 CCGAGCTCGAGCCCATGG 62.599 72.222 36.59 23.98 43.38 3.66
102 103 3.379445 GACGACGAGGGCAGGGAA 61.379 66.667 0.00 0.00 0.00 3.97
103 104 3.358076 GACGACGAGGGCAGGGAAG 62.358 68.421 0.00 0.00 0.00 3.46
104 105 3.068691 CGACGAGGGCAGGGAAGA 61.069 66.667 0.00 0.00 0.00 2.87
105 106 2.896443 GACGAGGGCAGGGAAGAG 59.104 66.667 0.00 0.00 0.00 2.85
106 107 3.378399 GACGAGGGCAGGGAAGAGC 62.378 68.421 0.00 0.00 0.00 4.09
113 114 3.485764 GCAGGGAAGAGCCTAAAGG 57.514 57.895 0.00 0.00 36.66 3.11
123 124 3.884900 CCTAAAGGCGTGGGTTCG 58.115 61.111 0.00 0.00 0.00 3.95
124 125 1.294138 CCTAAAGGCGTGGGTTCGA 59.706 57.895 0.00 0.00 0.00 3.71
125 126 1.017701 CCTAAAGGCGTGGGTTCGAC 61.018 60.000 0.00 0.00 39.37 4.20
126 127 0.320073 CTAAAGGCGTGGGTTCGACA 60.320 55.000 0.00 0.00 41.80 4.35
127 128 0.600782 TAAAGGCGTGGGTTCGACAC 60.601 55.000 0.00 0.00 41.80 3.67
132 133 3.946907 GTGGGTTCGACACGGAAG 58.053 61.111 0.00 0.00 0.00 3.46
133 134 1.666872 GTGGGTTCGACACGGAAGG 60.667 63.158 0.00 0.00 0.00 3.46
134 135 1.833492 TGGGTTCGACACGGAAGGA 60.833 57.895 0.00 0.00 0.00 3.36
135 136 1.080025 GGGTTCGACACGGAAGGAG 60.080 63.158 0.00 0.00 0.00 3.69
136 137 1.080025 GGTTCGACACGGAAGGAGG 60.080 63.158 0.00 0.00 0.00 4.30
137 138 1.080025 GTTCGACACGGAAGGAGGG 60.080 63.158 0.00 0.00 0.00 4.30
138 139 2.280552 TTCGACACGGAAGGAGGGG 61.281 63.158 0.00 0.00 0.00 4.79
139 140 4.452733 CGACACGGAAGGAGGGGC 62.453 72.222 0.00 0.00 0.00 5.80
140 141 4.097361 GACACGGAAGGAGGGGCC 62.097 72.222 0.00 0.00 0.00 5.80
141 142 4.974438 ACACGGAAGGAGGGGCCA 62.974 66.667 4.39 0.00 40.02 5.36
142 143 4.101448 CACGGAAGGAGGGGCCAG 62.101 72.222 4.39 0.00 40.02 4.85
145 146 4.760220 GGAAGGAGGGGCCAGGGA 62.760 72.222 4.39 0.00 40.02 4.20
146 147 3.412408 GAAGGAGGGGCCAGGGAC 61.412 72.222 4.39 0.00 40.02 4.46
202 203 4.873129 CATGGCGACGACGAGGGG 62.873 72.222 12.29 0.00 42.66 4.79
228 229 3.721706 CCGAGGGGCTGGCTCTTT 61.722 66.667 4.63 0.00 0.00 2.52
229 230 2.352805 CGAGGGGCTGGCTCTTTT 59.647 61.111 4.63 0.00 0.00 2.27
230 231 1.303643 CGAGGGGCTGGCTCTTTTT 60.304 57.895 4.63 0.00 0.00 1.94
247 248 1.975660 TTTTCTTTCACCTCACGGGG 58.024 50.000 0.00 0.00 40.03 5.73
248 249 1.133363 TTTCTTTCACCTCACGGGGA 58.867 50.000 0.00 0.00 42.31 4.81
252 253 4.887957 TCACCTCACGGGGAAGAT 57.112 55.556 0.00 0.00 40.63 2.40
254 255 2.241281 TCACCTCACGGGGAAGATAA 57.759 50.000 0.00 0.00 40.63 1.75
255 256 2.542550 TCACCTCACGGGGAAGATAAA 58.457 47.619 0.00 0.00 40.63 1.40
256 257 2.907696 TCACCTCACGGGGAAGATAAAA 59.092 45.455 0.00 0.00 40.63 1.52
257 258 3.055385 TCACCTCACGGGGAAGATAAAAG 60.055 47.826 0.00 0.00 40.63 2.27
258 259 2.238898 ACCTCACGGGGAAGATAAAAGG 59.761 50.000 0.00 0.00 40.03 3.11
259 260 2.504175 CCTCACGGGGAAGATAAAAGGA 59.496 50.000 0.00 0.00 0.00 3.36
260 261 3.054655 CCTCACGGGGAAGATAAAAGGAA 60.055 47.826 0.00 0.00 0.00 3.36
261 262 3.939592 CTCACGGGGAAGATAAAAGGAAC 59.060 47.826 0.00 0.00 0.00 3.62
300 301 5.857471 TTTTTCATTCTATGGCAGATGGG 57.143 39.130 0.00 0.00 31.77 4.00
301 302 2.574006 TCATTCTATGGCAGATGGGC 57.426 50.000 0.00 0.00 43.73 5.36
308 309 4.147587 GGCAGATGGGCCCCATGT 62.148 66.667 23.03 14.75 45.26 3.21
311 312 4.147587 AGATGGGCCCCATGTGGC 62.148 66.667 23.03 11.24 45.26 5.01
318 319 3.751246 CCCCATGTGGCAGCAACG 61.751 66.667 0.00 0.00 0.00 4.10
319 320 2.672651 CCCATGTGGCAGCAACGA 60.673 61.111 0.00 0.00 0.00 3.85
320 321 2.048023 CCCATGTGGCAGCAACGAT 61.048 57.895 0.00 0.00 0.00 3.73
321 322 1.138036 CCATGTGGCAGCAACGATG 59.862 57.895 0.00 0.88 0.00 3.84
322 323 1.307355 CCATGTGGCAGCAACGATGA 61.307 55.000 11.80 0.00 0.00 2.92
323 324 0.179181 CATGTGGCAGCAACGATGAC 60.179 55.000 0.00 0.00 0.00 3.06
324 325 1.308069 ATGTGGCAGCAACGATGACC 61.308 55.000 0.00 0.00 0.00 4.02
325 326 2.741985 TGGCAGCAACGATGACCG 60.742 61.111 0.00 0.00 45.44 4.79
326 327 2.434185 GGCAGCAACGATGACCGA 60.434 61.111 0.00 0.00 41.76 4.69
327 328 2.740714 GGCAGCAACGATGACCGAC 61.741 63.158 0.00 0.00 41.76 4.79
328 329 1.738099 GCAGCAACGATGACCGACT 60.738 57.895 0.00 0.00 41.76 4.18
329 330 1.687494 GCAGCAACGATGACCGACTC 61.687 60.000 0.00 0.00 41.76 3.36
330 331 1.154016 AGCAACGATGACCGACTCG 60.154 57.895 0.00 0.00 41.76 4.18
331 332 2.789203 GCAACGATGACCGACTCGC 61.789 63.158 0.00 0.00 41.76 5.03
332 333 2.158959 CAACGATGACCGACTCGCC 61.159 63.158 0.00 0.00 41.76 5.54
333 334 3.352338 AACGATGACCGACTCGCCC 62.352 63.158 0.00 0.00 41.76 6.13
334 335 3.822192 CGATGACCGACTCGCCCA 61.822 66.667 0.00 0.00 41.76 5.36
335 336 2.105128 GATGACCGACTCGCCCAG 59.895 66.667 0.00 0.00 0.00 4.45
336 337 4.148825 ATGACCGACTCGCCCAGC 62.149 66.667 0.00 0.00 0.00 4.85
341 342 4.124351 CGACTCGCCCAGCCGTTA 62.124 66.667 0.00 0.00 0.00 3.18
342 343 2.499685 GACTCGCCCAGCCGTTAT 59.500 61.111 0.00 0.00 0.00 1.89
343 344 1.591863 GACTCGCCCAGCCGTTATC 60.592 63.158 0.00 0.00 0.00 1.75
344 345 2.280186 CTCGCCCAGCCGTTATCC 60.280 66.667 0.00 0.00 0.00 2.59
345 346 3.809374 CTCGCCCAGCCGTTATCCC 62.809 68.421 0.00 0.00 0.00 3.85
346 347 4.169696 CGCCCAGCCGTTATCCCA 62.170 66.667 0.00 0.00 0.00 4.37
347 348 2.515901 GCCCAGCCGTTATCCCAT 59.484 61.111 0.00 0.00 0.00 4.00
348 349 1.898574 GCCCAGCCGTTATCCCATG 60.899 63.158 0.00 0.00 0.00 3.66
349 350 1.898574 CCCAGCCGTTATCCCATGC 60.899 63.158 0.00 0.00 0.00 4.06
350 351 1.898574 CCAGCCGTTATCCCATGCC 60.899 63.158 0.00 0.00 0.00 4.40
351 352 1.152984 CAGCCGTTATCCCATGCCA 60.153 57.895 0.00 0.00 0.00 4.92
352 353 1.149174 AGCCGTTATCCCATGCCAG 59.851 57.895 0.00 0.00 0.00 4.85
353 354 1.148273 GCCGTTATCCCATGCCAGA 59.852 57.895 0.00 0.00 0.00 3.86
354 355 0.250901 GCCGTTATCCCATGCCAGAT 60.251 55.000 0.00 0.00 0.00 2.90
355 356 1.527034 CCGTTATCCCATGCCAGATG 58.473 55.000 0.00 0.00 0.00 2.90
356 357 1.527034 CGTTATCCCATGCCAGATGG 58.473 55.000 0.00 0.00 38.88 3.51
357 358 1.202806 CGTTATCCCATGCCAGATGGT 60.203 52.381 0.00 0.00 37.48 3.55
358 359 2.508526 GTTATCCCATGCCAGATGGTC 58.491 52.381 0.00 0.00 37.48 4.02
359 360 1.067295 TATCCCATGCCAGATGGTCC 58.933 55.000 0.00 0.00 37.48 4.46
360 361 0.700269 ATCCCATGCCAGATGGTCCT 60.700 55.000 0.00 0.00 37.48 3.85
361 362 1.152819 CCCATGCCAGATGGTCCTG 60.153 63.158 0.00 0.00 37.48 3.86
362 363 1.638679 CCCATGCCAGATGGTCCTGA 61.639 60.000 0.00 0.00 37.48 3.86
363 364 0.465097 CCATGCCAGATGGTCCTGAC 60.465 60.000 0.00 0.00 36.29 3.51
364 365 0.812811 CATGCCAGATGGTCCTGACG 60.813 60.000 0.00 0.00 36.29 4.35
365 366 1.976132 ATGCCAGATGGTCCTGACGG 61.976 60.000 0.00 0.00 36.29 4.79
366 367 2.359169 GCCAGATGGTCCTGACGGA 61.359 63.158 0.00 0.00 36.29 4.69
367 368 1.690219 GCCAGATGGTCCTGACGGAT 61.690 60.000 0.00 0.00 42.43 4.18
368 369 0.105593 CCAGATGGTCCTGACGGATG 59.894 60.000 0.00 0.00 42.43 3.51
369 370 1.114627 CAGATGGTCCTGACGGATGA 58.885 55.000 0.00 0.00 42.43 2.92
370 371 1.068281 CAGATGGTCCTGACGGATGAG 59.932 57.143 0.00 0.00 42.43 2.90
371 372 0.249657 GATGGTCCTGACGGATGAGC 60.250 60.000 0.00 0.00 42.43 4.26
372 373 1.690219 ATGGTCCTGACGGATGAGCC 61.690 60.000 0.00 0.00 42.43 4.70
373 374 2.501610 GTCCTGACGGATGAGCCC 59.498 66.667 0.00 0.00 42.43 5.19
374 375 2.764128 TCCTGACGGATGAGCCCC 60.764 66.667 0.00 0.00 33.30 5.80
375 376 3.866582 CCTGACGGATGAGCCCCC 61.867 72.222 0.00 0.00 0.00 5.40
386 387 3.570212 AGCCCCCGCTGTCAGTTT 61.570 61.111 0.93 0.00 46.19 2.66
387 388 2.597510 GCCCCCGCTGTCAGTTTT 60.598 61.111 0.93 0.00 0.00 2.43
388 389 2.200337 GCCCCCGCTGTCAGTTTTT 61.200 57.895 0.93 0.00 0.00 1.94
389 390 1.956802 CCCCCGCTGTCAGTTTTTC 59.043 57.895 0.93 0.00 0.00 2.29
390 391 0.537371 CCCCCGCTGTCAGTTTTTCT 60.537 55.000 0.93 0.00 0.00 2.52
391 392 1.318576 CCCCGCTGTCAGTTTTTCTT 58.681 50.000 0.93 0.00 0.00 2.52
392 393 1.681264 CCCCGCTGTCAGTTTTTCTTT 59.319 47.619 0.93 0.00 0.00 2.52
393 394 2.543653 CCCCGCTGTCAGTTTTTCTTTG 60.544 50.000 0.93 0.00 0.00 2.77
394 395 2.099098 CCCGCTGTCAGTTTTTCTTTGT 59.901 45.455 0.93 0.00 0.00 2.83
395 396 3.363178 CCGCTGTCAGTTTTTCTTTGTC 58.637 45.455 0.93 0.00 0.00 3.18
396 397 3.181501 CCGCTGTCAGTTTTTCTTTGTCA 60.182 43.478 0.93 0.00 0.00 3.58
397 398 4.411327 CGCTGTCAGTTTTTCTTTGTCAA 58.589 39.130 0.93 0.00 0.00 3.18
398 399 4.856487 CGCTGTCAGTTTTTCTTTGTCAAA 59.144 37.500 0.93 0.00 0.00 2.69
399 400 5.344665 CGCTGTCAGTTTTTCTTTGTCAAAA 59.655 36.000 0.93 0.00 0.00 2.44
400 401 6.525355 GCTGTCAGTTTTTCTTTGTCAAAAC 58.475 36.000 0.93 0.00 41.35 2.43
401 402 6.145371 GCTGTCAGTTTTTCTTTGTCAAAACA 59.855 34.615 0.93 0.00 42.80 2.83
402 403 7.148590 GCTGTCAGTTTTTCTTTGTCAAAACAT 60.149 33.333 0.93 0.00 42.80 2.71
403 404 8.016497 TGTCAGTTTTTCTTTGTCAAAACATG 57.984 30.769 9.51 0.00 42.80 3.21
404 405 7.117523 TGTCAGTTTTTCTTTGTCAAAACATGG 59.882 33.333 9.51 0.89 42.80 3.66
405 406 7.117667 GTCAGTTTTTCTTTGTCAAAACATGGT 59.882 33.333 9.51 0.00 42.80 3.55
406 407 7.659390 TCAGTTTTTCTTTGTCAAAACATGGTT 59.341 29.630 9.51 0.00 42.80 3.67
407 408 8.930760 CAGTTTTTCTTTGTCAAAACATGGTTA 58.069 29.630 0.00 0.00 42.80 2.85
408 409 9.150348 AGTTTTTCTTTGTCAAAACATGGTTAG 57.850 29.630 0.00 0.00 42.80 2.34
409 410 9.145865 GTTTTTCTTTGTCAAAACATGGTTAGA 57.854 29.630 0.00 0.00 40.92 2.10
410 411 8.696410 TTTTCTTTGTCAAAACATGGTTAGAC 57.304 30.769 0.00 0.00 34.73 2.59
411 412 6.055231 TCTTTGTCAAAACATGGTTAGACG 57.945 37.500 0.00 0.00 34.73 4.18
412 413 5.587043 TCTTTGTCAAAACATGGTTAGACGT 59.413 36.000 0.00 0.00 34.73 4.34
413 414 5.821516 TTGTCAAAACATGGTTAGACGTT 57.178 34.783 0.00 0.00 34.73 3.99
414 415 5.163302 TGTCAAAACATGGTTAGACGTTG 57.837 39.130 0.00 0.00 0.00 4.10
415 416 4.636648 TGTCAAAACATGGTTAGACGTTGT 59.363 37.500 0.00 0.00 0.00 3.32
416 417 5.124138 TGTCAAAACATGGTTAGACGTTGTT 59.876 36.000 0.00 0.00 0.00 2.83
417 418 6.031471 GTCAAAACATGGTTAGACGTTGTTT 58.969 36.000 0.00 6.47 0.00 2.83
418 419 6.528774 GTCAAAACATGGTTAGACGTTGTTTT 59.471 34.615 15.61 15.61 38.15 2.43
419 420 6.748198 TCAAAACATGGTTAGACGTTGTTTTC 59.252 34.615 17.56 0.00 36.33 2.29
420 421 5.821516 AACATGGTTAGACGTTGTTTTCA 57.178 34.783 0.00 0.00 0.00 2.69
421 422 5.418310 ACATGGTTAGACGTTGTTTTCAG 57.582 39.130 0.00 0.00 0.00 3.02
422 423 4.879545 ACATGGTTAGACGTTGTTTTCAGT 59.120 37.500 0.00 0.00 0.00 3.41
423 424 4.868450 TGGTTAGACGTTGTTTTCAGTG 57.132 40.909 0.00 0.00 0.00 3.66
424 425 3.064271 TGGTTAGACGTTGTTTTCAGTGC 59.936 43.478 0.00 0.00 0.00 4.40
425 426 3.064271 GGTTAGACGTTGTTTTCAGTGCA 59.936 43.478 0.00 0.00 0.00 4.57
426 427 4.261031 GGTTAGACGTTGTTTTCAGTGCAT 60.261 41.667 0.00 0.00 0.00 3.96
427 428 5.270853 GTTAGACGTTGTTTTCAGTGCATT 58.729 37.500 0.00 0.00 0.00 3.56
428 429 3.952535 AGACGTTGTTTTCAGTGCATTC 58.047 40.909 0.00 0.00 0.00 2.67
429 430 3.376859 AGACGTTGTTTTCAGTGCATTCA 59.623 39.130 0.00 0.00 0.00 2.57
430 431 3.694734 ACGTTGTTTTCAGTGCATTCAG 58.305 40.909 0.00 0.00 0.00 3.02
431 432 2.468777 CGTTGTTTTCAGTGCATTCAGC 59.531 45.455 0.00 0.00 45.96 4.26
444 445 4.439305 GCATTCAGCAAACCATTACTCA 57.561 40.909 0.00 0.00 44.79 3.41
445 446 4.808558 GCATTCAGCAAACCATTACTCAA 58.191 39.130 0.00 0.00 44.79 3.02
446 447 5.229423 GCATTCAGCAAACCATTACTCAAA 58.771 37.500 0.00 0.00 44.79 2.69
447 448 5.695816 GCATTCAGCAAACCATTACTCAAAA 59.304 36.000 0.00 0.00 44.79 2.44
448 449 6.202570 GCATTCAGCAAACCATTACTCAAAAA 59.797 34.615 0.00 0.00 44.79 1.94
449 450 7.095102 GCATTCAGCAAACCATTACTCAAAAAT 60.095 33.333 0.00 0.00 44.79 1.82
450 451 9.421806 CATTCAGCAAACCATTACTCAAAAATA 57.578 29.630 0.00 0.00 0.00 1.40
451 452 9.643693 ATTCAGCAAACCATTACTCAAAAATAG 57.356 29.630 0.00 0.00 0.00 1.73
452 453 8.402798 TCAGCAAACCATTACTCAAAAATAGA 57.597 30.769 0.00 0.00 0.00 1.98
453 454 8.855110 TCAGCAAACCATTACTCAAAAATAGAA 58.145 29.630 0.00 0.00 0.00 2.10
454 455 9.643693 CAGCAAACCATTACTCAAAAATAGAAT 57.356 29.630 0.00 0.00 0.00 2.40
482 483 6.986904 TTTTTGGGCAAACTTTTTACGAAT 57.013 29.167 0.00 0.00 0.00 3.34
484 485 7.466193 TTTTGGGCAAACTTTTTACGAATAC 57.534 32.000 0.00 0.00 0.00 1.89
485 486 4.785417 TGGGCAAACTTTTTACGAATACG 58.215 39.130 0.00 0.00 45.75 3.06
486 487 4.160594 GGGCAAACTTTTTACGAATACGG 58.839 43.478 0.00 0.00 44.46 4.02
487 488 4.320421 GGGCAAACTTTTTACGAATACGGT 60.320 41.667 0.00 0.00 44.46 4.83
488 489 4.613866 GGCAAACTTTTTACGAATACGGTG 59.386 41.667 0.00 0.00 44.46 4.94
489 490 4.613866 GCAAACTTTTTACGAATACGGTGG 59.386 41.667 0.00 0.00 44.46 4.61
490 491 5.750650 CAAACTTTTTACGAATACGGTGGT 58.249 37.500 0.00 0.00 44.46 4.16
491 492 6.200808 CAAACTTTTTACGAATACGGTGGTT 58.799 36.000 0.00 0.00 44.46 3.67
492 493 6.375945 AACTTTTTACGAATACGGTGGTTT 57.624 33.333 0.00 0.00 44.46 3.27
493 494 6.375945 ACTTTTTACGAATACGGTGGTTTT 57.624 33.333 0.00 0.00 44.46 2.43
494 495 6.429624 ACTTTTTACGAATACGGTGGTTTTC 58.570 36.000 0.00 0.00 44.46 2.29
495 496 5.998454 TTTTACGAATACGGTGGTTTTCA 57.002 34.783 0.00 0.00 44.46 2.69
496 497 5.594724 TTTACGAATACGGTGGTTTTCAG 57.405 39.130 0.00 0.00 44.46 3.02
497 498 1.802365 ACGAATACGGTGGTTTTCAGC 59.198 47.619 0.00 0.00 44.46 4.26
498 499 1.801771 CGAATACGGTGGTTTTCAGCA 59.198 47.619 0.00 0.00 43.59 4.41
504 505 1.278637 GTGGTTTTCAGCACCGTCG 59.721 57.895 0.00 0.00 44.37 5.12
505 506 1.890041 TGGTTTTCAGCACCGTCGG 60.890 57.895 10.48 10.48 37.07 4.79
506 507 1.595929 GGTTTTCAGCACCGTCGGA 60.596 57.895 20.51 0.00 0.00 4.55
507 508 1.568025 GTTTTCAGCACCGTCGGAC 59.432 57.895 20.51 9.71 0.00 4.79
508 509 1.952133 TTTTCAGCACCGTCGGACG 60.952 57.895 22.88 22.88 42.11 4.79
512 513 4.373116 AGCACCGTCGGACGCAAT 62.373 61.111 24.26 9.46 40.91 3.56
513 514 3.419759 GCACCGTCGGACGCAATT 61.420 61.111 24.26 5.76 40.91 2.32
514 515 2.474266 CACCGTCGGACGCAATTG 59.526 61.111 24.26 12.92 40.91 2.32
515 516 2.029964 ACCGTCGGACGCAATTGT 59.970 55.556 24.26 13.56 40.91 2.71
516 517 2.314647 ACCGTCGGACGCAATTGTG 61.315 57.895 24.26 17.32 40.91 3.33
517 518 2.474266 CGTCGGACGCAATTGTGG 59.526 61.111 22.27 10.12 33.65 4.17
518 519 2.314647 CGTCGGACGCAATTGTGGT 61.315 57.895 22.27 13.20 33.65 4.16
519 520 1.206578 GTCGGACGCAATTGTGGTG 59.793 57.895 22.27 11.60 0.00 4.17
520 521 1.963855 TCGGACGCAATTGTGGTGG 60.964 57.895 22.27 10.76 0.00 4.61
521 522 2.258013 CGGACGCAATTGTGGTGGT 61.258 57.895 22.27 1.66 0.00 4.16
522 523 1.791103 CGGACGCAATTGTGGTGGTT 61.791 55.000 22.27 1.27 0.00 3.67
523 524 0.387565 GGACGCAATTGTGGTGGTTT 59.612 50.000 22.27 0.51 0.00 3.27
524 525 1.202475 GGACGCAATTGTGGTGGTTTT 60.202 47.619 22.27 0.00 0.00 2.43
525 526 2.545731 GACGCAATTGTGGTGGTTTTT 58.454 42.857 22.27 0.00 0.00 1.94
526 527 2.275318 ACGCAATTGTGGTGGTTTTTG 58.725 42.857 22.27 0.00 0.00 2.44
527 528 1.596727 CGCAATTGTGGTGGTTTTTGG 59.403 47.619 11.28 0.00 0.00 3.28
528 529 1.333308 GCAATTGTGGTGGTTTTTGGC 59.667 47.619 7.40 0.00 0.00 4.52
529 530 2.636830 CAATTGTGGTGGTTTTTGGCA 58.363 42.857 0.00 0.00 0.00 4.92
530 531 3.012518 CAATTGTGGTGGTTTTTGGCAA 58.987 40.909 0.00 0.00 0.00 4.52
531 532 3.574354 ATTGTGGTGGTTTTTGGCAAT 57.426 38.095 0.00 0.00 0.00 3.56
532 533 3.356529 TTGTGGTGGTTTTTGGCAATT 57.643 38.095 0.00 0.00 0.00 2.32
533 534 3.356529 TGTGGTGGTTTTTGGCAATTT 57.643 38.095 0.00 0.00 0.00 1.82
534 535 3.012518 TGTGGTGGTTTTTGGCAATTTG 58.987 40.909 0.00 0.00 0.00 2.32
535 536 2.019984 TGGTGGTTTTTGGCAATTTGC 58.980 42.857 13.04 13.04 44.08 3.68
557 558 3.670105 GGGGGTCATGCTCAGAAAA 57.330 52.632 0.00 0.00 0.00 2.29
558 559 1.467920 GGGGGTCATGCTCAGAAAAG 58.532 55.000 0.00 0.00 0.00 2.27
559 560 1.272147 GGGGGTCATGCTCAGAAAAGT 60.272 52.381 0.00 0.00 0.00 2.66
560 561 1.815003 GGGGTCATGCTCAGAAAAGTG 59.185 52.381 0.00 0.00 0.00 3.16
561 562 1.815003 GGGTCATGCTCAGAAAAGTGG 59.185 52.381 0.00 0.00 0.00 4.00
562 563 1.815003 GGTCATGCTCAGAAAAGTGGG 59.185 52.381 0.00 0.00 0.00 4.61
563 564 2.508526 GTCATGCTCAGAAAAGTGGGT 58.491 47.619 0.00 0.00 0.00 4.51
564 565 2.227388 GTCATGCTCAGAAAAGTGGGTG 59.773 50.000 0.00 0.00 0.00 4.61
565 566 2.106338 TCATGCTCAGAAAAGTGGGTGA 59.894 45.455 0.00 0.00 0.00 4.02
566 567 2.727123 TGCTCAGAAAAGTGGGTGAA 57.273 45.000 0.00 0.00 0.00 3.18
567 568 2.297701 TGCTCAGAAAAGTGGGTGAAC 58.702 47.619 0.00 0.00 0.00 3.18
568 569 2.092429 TGCTCAGAAAAGTGGGTGAACT 60.092 45.455 0.00 0.00 0.00 3.01
569 570 2.952310 GCTCAGAAAAGTGGGTGAACTT 59.048 45.455 0.00 0.00 42.21 2.66
570 571 3.243201 GCTCAGAAAAGTGGGTGAACTTG 60.243 47.826 0.00 0.00 40.28 3.16
571 572 3.287222 TCAGAAAAGTGGGTGAACTTGG 58.713 45.455 0.00 0.00 40.28 3.61
572 573 3.023832 CAGAAAAGTGGGTGAACTTGGT 58.976 45.455 0.00 0.00 40.28 3.67
573 574 4.080243 TCAGAAAAGTGGGTGAACTTGGTA 60.080 41.667 0.00 0.00 40.28 3.25
574 575 4.275936 CAGAAAAGTGGGTGAACTTGGTAG 59.724 45.833 0.00 0.00 40.28 3.18
575 576 3.945640 AAAGTGGGTGAACTTGGTAGT 57.054 42.857 0.00 0.00 40.28 2.73
576 577 5.131475 AGAAAAGTGGGTGAACTTGGTAGTA 59.869 40.000 0.00 0.00 40.28 1.82
577 578 4.347360 AAGTGGGTGAACTTGGTAGTAC 57.653 45.455 0.00 0.00 38.95 2.73
578 579 3.584294 AGTGGGTGAACTTGGTAGTACT 58.416 45.455 0.00 0.00 33.17 2.73
579 580 3.323979 AGTGGGTGAACTTGGTAGTACTG 59.676 47.826 5.39 0.00 33.17 2.74
580 581 3.322828 GTGGGTGAACTTGGTAGTACTGA 59.677 47.826 5.39 0.00 33.17 3.41
581 582 3.968649 TGGGTGAACTTGGTAGTACTGAA 59.031 43.478 5.39 0.00 33.17 3.02
582 583 4.409574 TGGGTGAACTTGGTAGTACTGAAA 59.590 41.667 5.39 0.00 33.17 2.69
583 584 5.072600 TGGGTGAACTTGGTAGTACTGAAAT 59.927 40.000 5.39 0.00 33.17 2.17
584 585 6.002082 GGGTGAACTTGGTAGTACTGAAATT 58.998 40.000 5.39 0.00 33.17 1.82
585 586 6.489022 GGGTGAACTTGGTAGTACTGAAATTT 59.511 38.462 5.39 0.00 33.17 1.82
586 587 7.360361 GGTGAACTTGGTAGTACTGAAATTTG 58.640 38.462 5.39 0.00 33.17 2.32
587 588 7.012989 GGTGAACTTGGTAGTACTGAAATTTGT 59.987 37.037 5.39 0.00 33.17 2.83
588 589 7.855904 GTGAACTTGGTAGTACTGAAATTTGTG 59.144 37.037 5.39 0.00 33.17 3.33
589 590 7.771361 TGAACTTGGTAGTACTGAAATTTGTGA 59.229 33.333 5.39 0.00 33.17 3.58
590 591 8.514330 AACTTGGTAGTACTGAAATTTGTGAA 57.486 30.769 5.39 0.00 33.17 3.18
591 592 8.691661 ACTTGGTAGTACTGAAATTTGTGAAT 57.308 30.769 5.39 0.00 31.21 2.57
592 593 8.567948 ACTTGGTAGTACTGAAATTTGTGAATG 58.432 33.333 5.39 0.00 31.21 2.67
593 594 6.908825 TGGTAGTACTGAAATTTGTGAATGC 58.091 36.000 5.39 0.00 0.00 3.56
594 595 6.714810 TGGTAGTACTGAAATTTGTGAATGCT 59.285 34.615 5.39 0.00 0.00 3.79
595 596 7.023575 GGTAGTACTGAAATTTGTGAATGCTG 58.976 38.462 5.39 0.00 0.00 4.41
596 597 6.639632 AGTACTGAAATTTGTGAATGCTGT 57.360 33.333 0.00 0.00 0.00 4.40
597 598 6.441274 AGTACTGAAATTTGTGAATGCTGTG 58.559 36.000 0.00 0.00 0.00 3.66
598 599 5.518848 ACTGAAATTTGTGAATGCTGTGA 57.481 34.783 0.00 0.00 0.00 3.58
599 600 6.092955 ACTGAAATTTGTGAATGCTGTGAT 57.907 33.333 0.00 0.00 0.00 3.06
600 601 7.218228 ACTGAAATTTGTGAATGCTGTGATA 57.782 32.000 0.00 0.00 0.00 2.15
601 602 7.833786 ACTGAAATTTGTGAATGCTGTGATAT 58.166 30.769 0.00 0.00 0.00 1.63
602 603 8.959548 ACTGAAATTTGTGAATGCTGTGATATA 58.040 29.630 0.00 0.00 0.00 0.86
603 604 9.229784 CTGAAATTTGTGAATGCTGTGATATAC 57.770 33.333 0.00 0.00 0.00 1.47
604 605 8.959548 TGAAATTTGTGAATGCTGTGATATACT 58.040 29.630 0.00 0.00 0.00 2.12
611 612 8.344831 TGTGAATGCTGTGATATACTAAATTGC 58.655 33.333 0.00 0.00 0.00 3.56
645 646 3.058639 GTGTGCATGACTCTGAAACTTCC 60.059 47.826 0.00 0.00 0.00 3.46
649 650 4.284490 TGCATGACTCTGAAACTTCCTACT 59.716 41.667 0.00 0.00 0.00 2.57
650 651 5.480422 TGCATGACTCTGAAACTTCCTACTA 59.520 40.000 0.00 0.00 0.00 1.82
651 652 5.808030 GCATGACTCTGAAACTTCCTACTAC 59.192 44.000 0.00 0.00 0.00 2.73
653 654 6.328641 TGACTCTGAAACTTCCTACTACAC 57.671 41.667 0.00 0.00 0.00 2.90
668 669 5.875359 CCTACTACACCACCTTCTTTCATTC 59.125 44.000 0.00 0.00 0.00 2.67
674 675 3.508793 ACCACCTTCTTTCATTCATGCTG 59.491 43.478 0.00 0.00 0.00 4.41
675 676 3.760151 CCACCTTCTTTCATTCATGCTGA 59.240 43.478 0.00 0.00 0.00 4.26
676 677 4.219070 CCACCTTCTTTCATTCATGCTGAA 59.781 41.667 6.48 6.48 41.09 3.02
678 679 6.095860 CCACCTTCTTTCATTCATGCTGAATA 59.904 38.462 10.23 2.11 44.60 1.75
722 731 2.942641 GGTAACAACCTGGCTGACC 58.057 57.895 3.70 0.00 0.00 4.02
731 740 3.241530 TGGCTGACCGGTGCTTCT 61.242 61.111 14.63 0.00 39.70 2.85
732 741 2.032681 GGCTGACCGGTGCTTCTT 59.967 61.111 14.63 0.00 0.00 2.52
733 742 2.035442 GGCTGACCGGTGCTTCTTC 61.035 63.158 14.63 0.00 0.00 2.87
734 743 1.004440 GCTGACCGGTGCTTCTTCT 60.004 57.895 14.63 0.00 0.00 2.85
735 744 0.246635 GCTGACCGGTGCTTCTTCTA 59.753 55.000 14.63 0.00 0.00 2.10
736 745 1.737363 GCTGACCGGTGCTTCTTCTAG 60.737 57.143 14.63 0.00 0.00 2.43
764 773 8.755696 TTAACAAATTTACATGCATCCTTGTC 57.244 30.769 0.00 0.00 32.34 3.18
819 843 1.435515 TGCGACCCAAGCAAAACAC 59.564 52.632 0.00 0.00 42.18 3.32
841 865 0.386985 GAGAGCAGCACAAGCAAAGC 60.387 55.000 0.00 0.00 45.49 3.51
848 872 0.386838 GCACAAGCAAAGCAAGGAGT 59.613 50.000 0.00 0.00 41.58 3.85
943 998 1.996292 TCCTTGTCGCTGAAAGATCG 58.004 50.000 0.00 0.00 34.07 3.69
945 1000 0.371645 CTTGTCGCTGAAAGATCGCC 59.628 55.000 0.00 0.00 34.07 5.54
950 1005 1.821332 GCTGAAAGATCGCCAGGGG 60.821 63.158 0.00 0.00 34.07 4.79
981 1041 3.564455 CGTCCCTGTACGCCTTATC 57.436 57.895 0.00 0.00 35.87 1.75
1107 1176 4.517703 CTCGCCGTCGACGTCTCC 62.518 72.222 33.49 18.45 40.21 3.71
1135 1204 1.801913 CTCACCGCGTCTTCCTTCG 60.802 63.158 4.92 0.00 0.00 3.79
1157 1226 3.899981 CTGCTGCGTTGTGGGCCTA 62.900 63.158 4.53 0.00 0.00 3.93
1222 1292 1.407989 GGGTTCATGAAGGAGGAGCTG 60.408 57.143 8.80 0.00 0.00 4.24
1224 1294 2.419851 GGTTCATGAAGGAGGAGCTGAG 60.420 54.545 8.80 0.00 0.00 3.35
1231 1301 1.381872 GGAGGAGCTGAGGGTGCTA 60.382 63.158 0.00 0.00 41.49 3.49
1422 1498 3.966543 GGGGTCACCACCACCAGG 61.967 72.222 0.00 0.00 45.94 4.45
1424 1500 2.430367 GGTCACCACCACCAGGAC 59.570 66.667 0.00 0.00 43.17 3.85
1425 1501 2.430367 GTCACCACCACCAGGACC 59.570 66.667 0.00 0.00 38.69 4.46
1475 1557 3.793144 CCGCGCAGAAGGAGCAAC 61.793 66.667 8.75 0.00 43.17 4.17
1476 1558 3.793144 CGCGCAGAAGGAGCAACC 61.793 66.667 8.75 0.00 43.17 3.77
1519 1607 2.509561 GGAGAGCGGAAAGGCGAC 60.510 66.667 0.00 0.00 38.18 5.19
1603 1694 2.849294 ACAGGGCTGAAGAGAAGAAC 57.151 50.000 0.00 0.00 0.00 3.01
1613 1707 0.318762 AGAGAAGAACACGGCACCTC 59.681 55.000 0.00 0.00 0.00 3.85
1638 1732 2.703007 AGACCAGGATTCAGATACAGGC 59.297 50.000 0.00 0.00 0.00 4.85
1646 1740 0.468214 TCAGATACAGGCGGAGGAGG 60.468 60.000 0.00 0.00 0.00 4.30
1647 1741 0.468214 CAGATACAGGCGGAGGAGGA 60.468 60.000 0.00 0.00 0.00 3.71
1648 1742 0.178975 AGATACAGGCGGAGGAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
1666 1760 0.682209 AGATTGCCACACCAGATGCC 60.682 55.000 0.00 0.00 0.00 4.40
1678 1772 0.804989 CAGATGCCCCAAGAAACGAC 59.195 55.000 0.00 0.00 0.00 4.34
1744 1841 2.287308 GCACGTTGTTGGCTTCATTGTA 60.287 45.455 0.00 0.00 0.00 2.41
1756 1853 2.218953 TCATTGTAATCGTCCTCGCC 57.781 50.000 0.00 0.00 36.96 5.54
1774 1871 1.029947 CCGTGGTAGGAATTGGTGCC 61.030 60.000 0.00 0.00 0.00 5.01
1806 1925 2.802415 CGCTGCTGCTCTGAATCTGTAT 60.802 50.000 14.03 0.00 36.97 2.29
1827 1955 2.906389 TCCTGCCTGACTAACTGAACAT 59.094 45.455 0.00 0.00 0.00 2.71
1866 1994 4.792068 ACAACTTGTGGAAATCAAGGAGA 58.208 39.130 9.82 0.00 44.29 3.71
1868 1996 5.300286 ACAACTTGTGGAAATCAAGGAGAAG 59.700 40.000 9.82 0.00 44.29 2.85
1908 2040 7.942990 ACAATTTTCAACTCCGTTTATAACCA 58.057 30.769 0.00 0.00 0.00 3.67
1943 2099 1.107945 AAGAAACCACCCACCAAACG 58.892 50.000 0.00 0.00 0.00 3.60
1967 2123 6.021704 CGTAGATACAACATGTCAACACGTAG 60.022 42.308 0.00 0.00 0.00 3.51
1978 2134 3.556775 GTCAACACGTAGCAGTTTACCAA 59.443 43.478 0.00 0.00 0.00 3.67
2004 2160 2.418334 GGACTAACCCTAGCCAAACTCG 60.418 54.545 0.00 0.00 0.00 4.18
2550 2722 2.811317 GTCTTGAGGCCGCAGTCG 60.811 66.667 9.79 2.72 0.00 4.18
2733 2905 3.132139 TCGGAGCGGGAGTTCTCG 61.132 66.667 0.00 0.00 40.24 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.622060 ATCCTGTTTGCCCCGACCG 62.622 63.158 0.00 0.00 0.00 4.79
26 27 1.749258 GATCCTGTTTGCCCCGACC 60.749 63.158 0.00 0.00 0.00 4.79
27 28 0.744771 GAGATCCTGTTTGCCCCGAC 60.745 60.000 0.00 0.00 0.00 4.79
28 29 1.602237 GAGATCCTGTTTGCCCCGA 59.398 57.895 0.00 0.00 0.00 5.14
29 30 1.815421 CGAGATCCTGTTTGCCCCG 60.815 63.158 0.00 0.00 0.00 5.73
30 31 2.115291 GCGAGATCCTGTTTGCCCC 61.115 63.158 0.00 0.00 0.00 5.80
31 32 2.115291 GGCGAGATCCTGTTTGCCC 61.115 63.158 0.28 0.00 37.82 5.36
32 33 2.464459 CGGCGAGATCCTGTTTGCC 61.464 63.158 0.00 1.55 39.96 4.52
33 34 1.424493 CTCGGCGAGATCCTGTTTGC 61.424 60.000 32.07 0.00 0.00 3.68
34 35 1.424493 GCTCGGCGAGATCCTGTTTG 61.424 60.000 38.56 11.08 0.00 2.93
35 36 1.153549 GCTCGGCGAGATCCTGTTT 60.154 57.895 38.56 0.00 0.00 2.83
36 37 2.010582 GAGCTCGGCGAGATCCTGTT 62.011 60.000 37.24 12.10 38.92 3.16
37 38 2.441164 AGCTCGGCGAGATCCTGT 60.441 61.111 38.56 13.05 0.00 4.00
38 39 2.334653 GAGCTCGGCGAGATCCTG 59.665 66.667 37.24 15.04 38.92 3.86
39 40 3.283684 CGAGCTCGGCGAGATCCT 61.284 66.667 39.21 27.46 41.41 3.24
40 41 3.280634 TCGAGCTCGGCGAGATCC 61.281 66.667 39.21 25.58 41.41 3.36
48 49 4.598894 CCATGGGCTCGAGCTCGG 62.599 72.222 34.46 24.95 46.72 4.63
85 86 3.358076 CTTCCCTGCCCTCGTCGTC 62.358 68.421 0.00 0.00 0.00 4.20
86 87 3.382832 CTTCCCTGCCCTCGTCGT 61.383 66.667 0.00 0.00 0.00 4.34
87 88 3.068691 TCTTCCCTGCCCTCGTCG 61.069 66.667 0.00 0.00 0.00 5.12
88 89 2.896443 CTCTTCCCTGCCCTCGTC 59.104 66.667 0.00 0.00 0.00 4.20
89 90 3.394836 GCTCTTCCCTGCCCTCGT 61.395 66.667 0.00 0.00 0.00 4.18
90 91 4.168291 GGCTCTTCCCTGCCCTCG 62.168 72.222 0.00 0.00 43.11 4.63
95 96 3.485764 CCTTTAGGCTCTTCCCTGC 57.514 57.895 0.00 0.00 36.41 4.85
106 107 1.017701 GTCGAACCCACGCCTTTAGG 61.018 60.000 0.00 0.00 38.53 2.69
107 108 0.320073 TGTCGAACCCACGCCTTTAG 60.320 55.000 0.00 0.00 0.00 1.85
108 109 0.600782 GTGTCGAACCCACGCCTTTA 60.601 55.000 0.00 0.00 0.00 1.85
109 110 1.890510 GTGTCGAACCCACGCCTTT 60.891 57.895 0.00 0.00 0.00 3.11
110 111 2.280592 GTGTCGAACCCACGCCTT 60.281 61.111 0.00 0.00 0.00 4.35
115 116 1.666872 CCTTCCGTGTCGAACCCAC 60.667 63.158 0.00 0.00 0.00 4.61
116 117 1.812686 CTCCTTCCGTGTCGAACCCA 61.813 60.000 0.00 0.00 0.00 4.51
117 118 1.080025 CTCCTTCCGTGTCGAACCC 60.080 63.158 0.00 0.00 0.00 4.11
118 119 1.080025 CCTCCTTCCGTGTCGAACC 60.080 63.158 0.00 0.00 0.00 3.62
119 120 1.080025 CCCTCCTTCCGTGTCGAAC 60.080 63.158 0.00 0.00 0.00 3.95
120 121 2.280552 CCCCTCCTTCCGTGTCGAA 61.281 63.158 0.00 0.00 0.00 3.71
121 122 2.678934 CCCCTCCTTCCGTGTCGA 60.679 66.667 0.00 0.00 0.00 4.20
122 123 4.452733 GCCCCTCCTTCCGTGTCG 62.453 72.222 0.00 0.00 0.00 4.35
123 124 4.097361 GGCCCCTCCTTCCGTGTC 62.097 72.222 0.00 0.00 0.00 3.67
124 125 4.974438 TGGCCCCTCCTTCCGTGT 62.974 66.667 0.00 0.00 35.26 4.49
125 126 4.101448 CTGGCCCCTCCTTCCGTG 62.101 72.222 0.00 0.00 35.26 4.94
128 129 4.760220 TCCCTGGCCCCTCCTTCC 62.760 72.222 0.00 0.00 35.26 3.46
129 130 3.412408 GTCCCTGGCCCCTCCTTC 61.412 72.222 0.00 0.00 35.26 3.46
133 134 3.813724 CATGGTCCCTGGCCCCTC 61.814 72.222 0.00 0.00 0.00 4.30
185 186 4.873129 CCCCTCGTCGTCGCCATG 62.873 72.222 0.00 0.00 36.96 3.66
211 212 2.771328 AAAAAGAGCCAGCCCCTCGG 62.771 60.000 0.00 0.00 34.56 4.63
212 213 1.303643 AAAAAGAGCCAGCCCCTCG 60.304 57.895 0.00 0.00 34.56 4.63
213 214 4.852388 AAAAAGAGCCAGCCCCTC 57.148 55.556 0.00 0.00 0.00 4.30
239 240 3.906720 TCCTTTTATCTTCCCCGTGAG 57.093 47.619 0.00 0.00 0.00 3.51
240 241 3.585732 AGTTCCTTTTATCTTCCCCGTGA 59.414 43.478 0.00 0.00 0.00 4.35
241 242 3.951663 AGTTCCTTTTATCTTCCCCGTG 58.048 45.455 0.00 0.00 0.00 4.94
242 243 4.652679 AAGTTCCTTTTATCTTCCCCGT 57.347 40.909 0.00 0.00 0.00 5.28
243 244 5.977489 AAAAGTTCCTTTTATCTTCCCCG 57.023 39.130 0.30 0.00 41.17 5.73
278 279 4.099881 GCCCATCTGCCATAGAATGAAAAA 59.900 41.667 0.00 0.00 39.30 1.94
279 280 3.638160 GCCCATCTGCCATAGAATGAAAA 59.362 43.478 0.00 0.00 39.30 2.29
280 281 3.225104 GCCCATCTGCCATAGAATGAAA 58.775 45.455 0.00 0.00 39.30 2.69
281 282 2.867624 GCCCATCTGCCATAGAATGAA 58.132 47.619 0.00 0.00 39.30 2.57
282 283 2.574006 GCCCATCTGCCATAGAATGA 57.426 50.000 0.00 0.00 39.30 2.57
292 293 2.836360 CACATGGGGCCCATCTGC 60.836 66.667 35.33 5.98 43.15 4.26
293 294 2.123597 CCACATGGGGCCCATCTG 60.124 66.667 35.33 31.48 43.15 2.90
301 302 3.751246 CGTTGCTGCCACATGGGG 61.751 66.667 10.61 10.61 37.04 4.96
302 303 2.048023 ATCGTTGCTGCCACATGGG 61.048 57.895 4.67 0.00 40.85 4.00
303 304 1.138036 CATCGTTGCTGCCACATGG 59.862 57.895 4.67 0.00 38.53 3.66
304 305 0.179181 GTCATCGTTGCTGCCACATG 60.179 55.000 4.67 7.16 0.00 3.21
305 306 1.308069 GGTCATCGTTGCTGCCACAT 61.308 55.000 4.67 0.00 0.00 3.21
306 307 1.965930 GGTCATCGTTGCTGCCACA 60.966 57.895 4.67 0.00 0.00 4.17
307 308 2.870372 GGTCATCGTTGCTGCCAC 59.130 61.111 0.00 0.00 0.00 5.01
308 309 2.741985 CGGTCATCGTTGCTGCCA 60.742 61.111 0.00 0.00 0.00 4.92
309 310 2.434185 TCGGTCATCGTTGCTGCC 60.434 61.111 0.00 0.00 40.32 4.85
310 311 1.687494 GAGTCGGTCATCGTTGCTGC 61.687 60.000 0.00 0.00 40.32 5.25
311 312 1.406219 CGAGTCGGTCATCGTTGCTG 61.406 60.000 4.10 0.00 40.32 4.41
312 313 1.154016 CGAGTCGGTCATCGTTGCT 60.154 57.895 4.10 0.00 40.32 3.91
313 314 2.789203 GCGAGTCGGTCATCGTTGC 61.789 63.158 15.52 0.00 40.97 4.17
314 315 2.158959 GGCGAGTCGGTCATCGTTG 61.159 63.158 15.52 0.00 40.97 4.10
315 316 2.181021 GGCGAGTCGGTCATCGTT 59.819 61.111 15.52 0.00 40.97 3.85
316 317 3.823330 GGGCGAGTCGGTCATCGT 61.823 66.667 15.52 0.00 40.97 3.73
317 318 3.758088 CTGGGCGAGTCGGTCATCG 62.758 68.421 15.52 0.00 41.79 3.84
318 319 2.105128 CTGGGCGAGTCGGTCATC 59.895 66.667 15.52 0.00 0.00 2.92
319 320 4.148825 GCTGGGCGAGTCGGTCAT 62.149 66.667 15.52 0.00 0.00 3.06
325 326 1.591863 GATAACGGCTGGGCGAGTC 60.592 63.158 22.37 12.54 0.00 3.36
326 327 2.499685 GATAACGGCTGGGCGAGT 59.500 61.111 22.37 12.03 0.00 4.18
327 328 2.280186 GGATAACGGCTGGGCGAG 60.280 66.667 22.37 0.00 0.00 5.03
328 329 3.857038 GGGATAACGGCTGGGCGA 61.857 66.667 22.37 1.99 0.00 5.54
329 330 3.476031 ATGGGATAACGGCTGGGCG 62.476 63.158 14.67 14.67 0.00 6.13
330 331 1.898574 CATGGGATAACGGCTGGGC 60.899 63.158 0.00 0.00 0.00 5.36
331 332 1.898574 GCATGGGATAACGGCTGGG 60.899 63.158 0.00 0.00 0.00 4.45
332 333 1.898574 GGCATGGGATAACGGCTGG 60.899 63.158 0.00 0.00 0.00 4.85
333 334 1.152984 TGGCATGGGATAACGGCTG 60.153 57.895 0.00 0.00 0.00 4.85
334 335 1.149174 CTGGCATGGGATAACGGCT 59.851 57.895 0.00 0.00 0.00 5.52
335 336 0.250901 ATCTGGCATGGGATAACGGC 60.251 55.000 0.00 0.00 0.00 5.68
336 337 1.527034 CATCTGGCATGGGATAACGG 58.473 55.000 0.00 0.00 0.00 4.44
337 338 1.202806 ACCATCTGGCATGGGATAACG 60.203 52.381 11.62 0.00 43.32 3.18
338 339 2.508526 GACCATCTGGCATGGGATAAC 58.491 52.381 11.62 0.00 43.32 1.89
339 340 1.425066 GGACCATCTGGCATGGGATAA 59.575 52.381 11.62 0.00 43.32 1.75
340 341 1.067295 GGACCATCTGGCATGGGATA 58.933 55.000 11.62 0.00 43.32 2.59
341 342 0.700269 AGGACCATCTGGCATGGGAT 60.700 55.000 11.62 0.00 43.32 3.85
342 343 1.308128 AGGACCATCTGGCATGGGA 60.308 57.895 11.62 0.00 43.32 4.37
343 344 1.152819 CAGGACCATCTGGCATGGG 60.153 63.158 11.62 5.02 43.32 4.00
344 345 0.465097 GTCAGGACCATCTGGCATGG 60.465 60.000 5.58 5.58 44.54 3.66
345 346 0.812811 CGTCAGGACCATCTGGCATG 60.813 60.000 0.00 0.00 39.17 4.06
346 347 1.524002 CGTCAGGACCATCTGGCAT 59.476 57.895 0.00 0.00 39.17 4.40
347 348 2.659063 CCGTCAGGACCATCTGGCA 61.659 63.158 0.00 0.00 39.17 4.92
348 349 2.187946 CCGTCAGGACCATCTGGC 59.812 66.667 0.00 0.00 41.02 4.85
349 350 4.034246 TCCGTCAGGACCATCTGG 57.966 61.111 0.00 0.00 42.75 3.86
358 359 3.866582 GGGGGCTCATCCGTCAGG 61.867 72.222 0.00 0.00 39.46 3.86
359 360 4.227134 CGGGGGCTCATCCGTCAG 62.227 72.222 0.00 0.00 41.23 3.51
364 365 4.554036 GACAGCGGGGGCTCATCC 62.554 72.222 0.00 0.00 0.00 3.51
365 366 3.746949 CTGACAGCGGGGGCTCATC 62.747 68.421 0.00 0.00 0.00 2.92
366 367 3.790437 CTGACAGCGGGGGCTCAT 61.790 66.667 0.00 0.00 0.00 2.90
368 369 3.553095 AAACTGACAGCGGGGGCTC 62.553 63.158 1.25 0.00 0.00 4.70
369 370 2.640581 AAAAACTGACAGCGGGGGCT 62.641 55.000 1.25 0.00 0.00 5.19
370 371 2.142357 GAAAAACTGACAGCGGGGGC 62.142 60.000 1.25 0.00 0.00 5.80
371 372 0.537371 AGAAAAACTGACAGCGGGGG 60.537 55.000 1.25 0.00 0.00 5.40
372 373 1.318576 AAGAAAAACTGACAGCGGGG 58.681 50.000 1.25 0.00 0.00 5.73
373 374 2.099098 ACAAAGAAAAACTGACAGCGGG 59.901 45.455 1.25 0.00 0.00 6.13
374 375 3.181501 TGACAAAGAAAAACTGACAGCGG 60.182 43.478 1.25 0.00 0.00 5.52
375 376 4.014847 TGACAAAGAAAAACTGACAGCG 57.985 40.909 1.25 0.00 0.00 5.18
376 377 6.145371 TGTTTTGACAAAGAAAAACTGACAGC 59.855 34.615 1.25 0.00 43.49 4.40
377 378 7.636259 TGTTTTGACAAAGAAAAACTGACAG 57.364 32.000 0.00 0.00 43.49 3.51
378 379 7.117523 CCATGTTTTGACAAAGAAAAACTGACA 59.882 33.333 11.10 0.23 43.49 3.58
379 380 7.117667 ACCATGTTTTGACAAAGAAAAACTGAC 59.882 33.333 11.10 0.00 43.49 3.51
380 381 7.158021 ACCATGTTTTGACAAAGAAAAACTGA 58.842 30.769 11.10 0.00 43.49 3.41
381 382 7.363205 ACCATGTTTTGACAAAGAAAAACTG 57.637 32.000 11.10 7.55 43.49 3.16
382 383 7.977789 AACCATGTTTTGACAAAGAAAAACT 57.022 28.000 11.10 0.00 43.49 2.66
383 384 9.145865 TCTAACCATGTTTTGACAAAGAAAAAC 57.854 29.630 0.10 4.49 43.43 2.43
384 385 9.145865 GTCTAACCATGTTTTGACAAAGAAAAA 57.854 29.630 11.56 0.00 33.16 1.94
385 386 7.486551 CGTCTAACCATGTTTTGACAAAGAAAA 59.513 33.333 15.46 0.00 32.67 2.29
386 387 6.970043 CGTCTAACCATGTTTTGACAAAGAAA 59.030 34.615 15.46 0.00 32.67 2.52
387 388 6.094325 ACGTCTAACCATGTTTTGACAAAGAA 59.906 34.615 15.46 0.00 32.67 2.52
388 389 5.587043 ACGTCTAACCATGTTTTGACAAAGA 59.413 36.000 15.46 0.00 32.67 2.52
389 390 5.816919 ACGTCTAACCATGTTTTGACAAAG 58.183 37.500 15.46 4.56 32.67 2.77
390 391 5.821516 ACGTCTAACCATGTTTTGACAAA 57.178 34.783 15.46 0.00 32.67 2.83
391 392 5.124138 ACAACGTCTAACCATGTTTTGACAA 59.876 36.000 15.46 0.00 32.67 3.18
392 393 4.636648 ACAACGTCTAACCATGTTTTGACA 59.363 37.500 15.46 0.00 32.67 3.58
393 394 5.164606 ACAACGTCTAACCATGTTTTGAC 57.835 39.130 7.36 7.36 0.00 3.18
394 395 5.821516 AACAACGTCTAACCATGTTTTGA 57.178 34.783 0.00 0.00 30.50 2.69
395 396 6.879188 AAAACAACGTCTAACCATGTTTTG 57.121 33.333 18.94 0.00 46.54 2.44
397 398 6.127842 ACTGAAAACAACGTCTAACCATGTTT 60.128 34.615 6.47 6.47 43.78 2.83
398 399 5.355910 ACTGAAAACAACGTCTAACCATGTT 59.644 36.000 0.00 0.00 35.86 2.71
399 400 4.879545 ACTGAAAACAACGTCTAACCATGT 59.120 37.500 0.00 0.00 0.00 3.21
400 401 5.204833 CACTGAAAACAACGTCTAACCATG 58.795 41.667 0.00 0.00 0.00 3.66
401 402 4.261031 GCACTGAAAACAACGTCTAACCAT 60.261 41.667 0.00 0.00 0.00 3.55
402 403 3.064271 GCACTGAAAACAACGTCTAACCA 59.936 43.478 0.00 0.00 0.00 3.67
403 404 3.064271 TGCACTGAAAACAACGTCTAACC 59.936 43.478 0.00 0.00 0.00 2.85
404 405 4.267357 TGCACTGAAAACAACGTCTAAC 57.733 40.909 0.00 0.00 0.00 2.34
405 406 5.065346 TGAATGCACTGAAAACAACGTCTAA 59.935 36.000 0.00 0.00 0.00 2.10
406 407 4.572795 TGAATGCACTGAAAACAACGTCTA 59.427 37.500 0.00 0.00 0.00 2.59
407 408 3.376859 TGAATGCACTGAAAACAACGTCT 59.623 39.130 0.00 0.00 0.00 4.18
408 409 3.690422 TGAATGCACTGAAAACAACGTC 58.310 40.909 0.00 0.00 0.00 4.34
409 410 3.694734 CTGAATGCACTGAAAACAACGT 58.305 40.909 0.00 0.00 0.00 3.99
410 411 2.468777 GCTGAATGCACTGAAAACAACG 59.531 45.455 0.00 0.00 42.31 4.10
423 424 4.439305 TGAGTAATGGTTTGCTGAATGC 57.561 40.909 0.00 0.00 43.25 3.56
424 425 7.712264 TTTTTGAGTAATGGTTTGCTGAATG 57.288 32.000 0.00 0.00 0.00 2.67
425 426 9.643693 CTATTTTTGAGTAATGGTTTGCTGAAT 57.356 29.630 0.00 0.00 0.00 2.57
426 427 8.855110 TCTATTTTTGAGTAATGGTTTGCTGAA 58.145 29.630 0.00 0.00 0.00 3.02
427 428 8.402798 TCTATTTTTGAGTAATGGTTTGCTGA 57.597 30.769 0.00 0.00 0.00 4.26
428 429 9.643693 ATTCTATTTTTGAGTAATGGTTTGCTG 57.356 29.630 0.00 0.00 0.00 4.41
459 460 6.986904 ATTCGTAAAAAGTTTGCCCAAAAA 57.013 29.167 0.00 0.00 31.33 1.94
460 461 6.198591 CGTATTCGTAAAAAGTTTGCCCAAAA 59.801 34.615 0.00 0.00 31.33 2.44
461 462 5.686397 CGTATTCGTAAAAAGTTTGCCCAAA 59.314 36.000 0.00 0.00 0.00 3.28
462 463 5.213675 CGTATTCGTAAAAAGTTTGCCCAA 58.786 37.500 0.00 0.00 0.00 4.12
463 464 4.320348 CCGTATTCGTAAAAAGTTTGCCCA 60.320 41.667 0.00 0.00 35.01 5.36
464 465 4.160594 CCGTATTCGTAAAAAGTTTGCCC 58.839 43.478 0.00 0.00 35.01 5.36
465 466 4.613866 CACCGTATTCGTAAAAAGTTTGCC 59.386 41.667 0.00 0.00 35.01 4.52
466 467 4.613866 CCACCGTATTCGTAAAAAGTTTGC 59.386 41.667 0.00 0.00 35.01 3.68
467 468 5.750650 ACCACCGTATTCGTAAAAAGTTTG 58.249 37.500 0.00 0.00 35.01 2.93
468 469 6.375945 AACCACCGTATTCGTAAAAAGTTT 57.624 33.333 0.00 0.00 35.01 2.66
469 470 6.375945 AAACCACCGTATTCGTAAAAAGTT 57.624 33.333 0.00 0.00 35.01 2.66
470 471 6.038050 TGAAAACCACCGTATTCGTAAAAAGT 59.962 34.615 0.00 0.00 35.01 2.66
471 472 6.428799 TGAAAACCACCGTATTCGTAAAAAG 58.571 36.000 0.00 0.00 35.01 2.27
472 473 6.369059 TGAAAACCACCGTATTCGTAAAAA 57.631 33.333 0.00 0.00 35.01 1.94
473 474 5.560567 GCTGAAAACCACCGTATTCGTAAAA 60.561 40.000 0.00 0.00 35.01 1.52
474 475 4.083908 GCTGAAAACCACCGTATTCGTAAA 60.084 41.667 0.00 0.00 35.01 2.01
475 476 3.432933 GCTGAAAACCACCGTATTCGTAA 59.567 43.478 0.00 0.00 35.01 3.18
476 477 2.995258 GCTGAAAACCACCGTATTCGTA 59.005 45.455 0.00 0.00 35.01 3.43
477 478 1.802365 GCTGAAAACCACCGTATTCGT 59.198 47.619 0.00 0.00 35.01 3.85
478 479 1.801771 TGCTGAAAACCACCGTATTCG 59.198 47.619 0.00 0.00 0.00 3.34
479 480 2.095415 GGTGCTGAAAACCACCGTATTC 60.095 50.000 0.00 0.00 41.75 1.75
480 481 1.883926 GGTGCTGAAAACCACCGTATT 59.116 47.619 0.00 0.00 41.75 1.89
481 482 1.530323 GGTGCTGAAAACCACCGTAT 58.470 50.000 0.00 0.00 41.75 3.06
482 483 3.009612 GGTGCTGAAAACCACCGTA 57.990 52.632 0.00 0.00 41.75 4.02
483 484 3.836151 GGTGCTGAAAACCACCGT 58.164 55.556 0.00 0.00 41.75 4.83
485 486 1.652563 GACGGTGCTGAAAACCACC 59.347 57.895 0.00 0.00 46.25 4.61
486 487 1.278637 CGACGGTGCTGAAAACCAC 59.721 57.895 0.00 0.00 37.57 4.16
487 488 1.890041 CCGACGGTGCTGAAAACCA 60.890 57.895 5.48 0.00 37.57 3.67
488 489 1.595929 TCCGACGGTGCTGAAAACC 60.596 57.895 14.79 0.00 0.00 3.27
489 490 1.568025 GTCCGACGGTGCTGAAAAC 59.432 57.895 14.79 0.00 0.00 2.43
490 491 1.952133 CGTCCGACGGTGCTGAAAA 60.952 57.895 14.79 0.00 38.08 2.29
491 492 2.355363 CGTCCGACGGTGCTGAAA 60.355 61.111 14.79 0.00 38.08 2.69
495 496 3.876589 AATTGCGTCCGACGGTGCT 62.877 57.895 25.99 11.06 42.82 4.40
496 497 3.419759 AATTGCGTCCGACGGTGC 61.420 61.111 21.84 21.55 42.82 5.01
497 498 2.314647 ACAATTGCGTCCGACGGTG 61.315 57.895 21.84 9.12 42.82 4.94
498 499 2.029964 ACAATTGCGTCCGACGGT 59.970 55.556 21.84 8.35 42.82 4.83
499 500 2.474266 CACAATTGCGTCCGACGG 59.526 61.111 21.84 7.84 42.82 4.79
500 501 2.314647 ACCACAATTGCGTCCGACG 61.315 57.895 16.72 16.72 45.88 5.12
501 502 1.206578 CACCACAATTGCGTCCGAC 59.793 57.895 5.05 0.00 0.00 4.79
502 503 1.963855 CCACCACAATTGCGTCCGA 60.964 57.895 5.05 0.00 0.00 4.55
503 504 1.791103 AACCACCACAATTGCGTCCG 61.791 55.000 5.05 0.00 0.00 4.79
504 505 0.387565 AAACCACCACAATTGCGTCC 59.612 50.000 5.05 0.00 0.00 4.79
505 506 2.217429 AAAACCACCACAATTGCGTC 57.783 45.000 5.05 0.00 0.00 5.19
506 507 2.275318 CAAAAACCACCACAATTGCGT 58.725 42.857 5.05 0.00 0.00 5.24
507 508 1.596727 CCAAAAACCACCACAATTGCG 59.403 47.619 5.05 0.00 0.00 4.85
508 509 1.333308 GCCAAAAACCACCACAATTGC 59.667 47.619 5.05 0.00 0.00 3.56
509 510 2.636830 TGCCAAAAACCACCACAATTG 58.363 42.857 3.24 3.24 0.00 2.32
510 511 3.356529 TTGCCAAAAACCACCACAATT 57.643 38.095 0.00 0.00 0.00 2.32
511 512 3.574354 ATTGCCAAAAACCACCACAAT 57.426 38.095 0.00 0.00 0.00 2.71
512 513 3.356529 AATTGCCAAAAACCACCACAA 57.643 38.095 0.00 0.00 0.00 3.33
513 514 3.012518 CAAATTGCCAAAAACCACCACA 58.987 40.909 0.00 0.00 0.00 4.17
514 515 2.223456 GCAAATTGCCAAAAACCACCAC 60.223 45.455 6.72 0.00 37.42 4.16
515 516 2.019984 GCAAATTGCCAAAAACCACCA 58.980 42.857 6.72 0.00 37.42 4.17
516 517 2.019984 TGCAAATTGCCAAAAACCACC 58.980 42.857 15.98 0.00 44.23 4.61
517 518 2.538535 CGTGCAAATTGCCAAAAACCAC 60.539 45.455 15.98 3.24 44.23 4.16
518 519 1.667724 CGTGCAAATTGCCAAAAACCA 59.332 42.857 15.98 0.00 44.23 3.67
519 520 1.003008 CCGTGCAAATTGCCAAAAACC 60.003 47.619 15.98 0.00 44.23 3.27
520 521 1.003008 CCCGTGCAAATTGCCAAAAAC 60.003 47.619 15.98 5.44 44.23 2.43
521 522 1.303309 CCCGTGCAAATTGCCAAAAA 58.697 45.000 15.98 0.00 44.23 1.94
522 523 0.533755 CCCCGTGCAAATTGCCAAAA 60.534 50.000 15.98 0.00 44.23 2.44
523 524 1.070445 CCCCGTGCAAATTGCCAAA 59.930 52.632 15.98 0.00 44.23 3.28
524 525 2.739784 CCCCGTGCAAATTGCCAA 59.260 55.556 15.98 0.00 44.23 4.52
525 526 3.309506 CCCCCGTGCAAATTGCCA 61.310 61.111 15.98 0.66 44.23 4.92
539 540 1.272147 ACTTTTCTGAGCATGACCCCC 60.272 52.381 0.00 0.00 0.00 5.40
540 541 1.815003 CACTTTTCTGAGCATGACCCC 59.185 52.381 0.00 0.00 0.00 4.95
541 542 1.815003 CCACTTTTCTGAGCATGACCC 59.185 52.381 0.00 0.00 0.00 4.46
542 543 1.815003 CCCACTTTTCTGAGCATGACC 59.185 52.381 0.00 0.00 0.00 4.02
543 544 2.227388 CACCCACTTTTCTGAGCATGAC 59.773 50.000 0.00 0.00 0.00 3.06
544 545 2.106338 TCACCCACTTTTCTGAGCATGA 59.894 45.455 0.00 0.00 0.00 3.07
545 546 2.507484 TCACCCACTTTTCTGAGCATG 58.493 47.619 0.00 0.00 0.00 4.06
546 547 2.887152 GTTCACCCACTTTTCTGAGCAT 59.113 45.455 0.00 0.00 0.00 3.79
547 548 2.092429 AGTTCACCCACTTTTCTGAGCA 60.092 45.455 0.00 0.00 0.00 4.26
548 549 2.576615 AGTTCACCCACTTTTCTGAGC 58.423 47.619 0.00 0.00 0.00 4.26
549 550 3.316308 CCAAGTTCACCCACTTTTCTGAG 59.684 47.826 0.00 0.00 34.60 3.35
550 551 3.287222 CCAAGTTCACCCACTTTTCTGA 58.713 45.455 0.00 0.00 34.60 3.27
551 552 3.023832 ACCAAGTTCACCCACTTTTCTG 58.976 45.455 0.00 0.00 34.60 3.02
552 553 3.382083 ACCAAGTTCACCCACTTTTCT 57.618 42.857 0.00 0.00 34.60 2.52
553 554 4.204799 ACTACCAAGTTCACCCACTTTTC 58.795 43.478 0.00 0.00 34.60 2.29
554 555 4.245251 ACTACCAAGTTCACCCACTTTT 57.755 40.909 0.00 0.00 34.60 2.27
555 556 3.945640 ACTACCAAGTTCACCCACTTT 57.054 42.857 0.00 0.00 34.60 2.66
556 557 3.971971 AGTACTACCAAGTTCACCCACTT 59.028 43.478 0.00 0.00 37.49 3.16
557 558 3.323979 CAGTACTACCAAGTTCACCCACT 59.676 47.826 0.00 0.00 37.15 4.00
558 559 3.322828 TCAGTACTACCAAGTTCACCCAC 59.677 47.826 0.00 0.00 37.15 4.61
559 560 3.578978 TCAGTACTACCAAGTTCACCCA 58.421 45.455 0.00 0.00 37.15 4.51
560 561 4.612264 TTCAGTACTACCAAGTTCACCC 57.388 45.455 0.00 0.00 37.15 4.61
561 562 7.012989 ACAAATTTCAGTACTACCAAGTTCACC 59.987 37.037 0.00 0.00 37.15 4.02
562 563 7.855904 CACAAATTTCAGTACTACCAAGTTCAC 59.144 37.037 0.00 0.00 37.15 3.18
563 564 7.771361 TCACAAATTTCAGTACTACCAAGTTCA 59.229 33.333 0.00 0.00 37.15 3.18
564 565 8.149973 TCACAAATTTCAGTACTACCAAGTTC 57.850 34.615 0.00 0.00 37.15 3.01
565 566 8.514330 TTCACAAATTTCAGTACTACCAAGTT 57.486 30.769 0.00 0.00 37.15 2.66
566 567 8.567948 CATTCACAAATTTCAGTACTACCAAGT 58.432 33.333 0.00 0.00 39.91 3.16
567 568 7.538678 GCATTCACAAATTTCAGTACTACCAAG 59.461 37.037 0.00 0.00 0.00 3.61
568 569 7.230510 AGCATTCACAAATTTCAGTACTACCAA 59.769 33.333 0.00 0.00 0.00 3.67
569 570 6.714810 AGCATTCACAAATTTCAGTACTACCA 59.285 34.615 0.00 0.00 0.00 3.25
570 571 7.023575 CAGCATTCACAAATTTCAGTACTACC 58.976 38.462 0.00 0.00 0.00 3.18
571 572 7.535258 CACAGCATTCACAAATTTCAGTACTAC 59.465 37.037 0.00 0.00 0.00 2.73
572 573 7.443879 TCACAGCATTCACAAATTTCAGTACTA 59.556 33.333 0.00 0.00 0.00 1.82
573 574 6.262944 TCACAGCATTCACAAATTTCAGTACT 59.737 34.615 0.00 0.00 0.00 2.73
574 575 6.437928 TCACAGCATTCACAAATTTCAGTAC 58.562 36.000 0.00 0.00 0.00 2.73
575 576 6.631971 TCACAGCATTCACAAATTTCAGTA 57.368 33.333 0.00 0.00 0.00 2.74
576 577 5.518848 TCACAGCATTCACAAATTTCAGT 57.481 34.783 0.00 0.00 0.00 3.41
577 578 9.229784 GTATATCACAGCATTCACAAATTTCAG 57.770 33.333 0.00 0.00 0.00 3.02
578 579 8.959548 AGTATATCACAGCATTCACAAATTTCA 58.040 29.630 0.00 0.00 0.00 2.69
585 586 8.344831 GCAATTTAGTATATCACAGCATTCACA 58.655 33.333 0.00 0.00 0.00 3.58
586 587 8.562892 AGCAATTTAGTATATCACAGCATTCAC 58.437 33.333 0.00 0.00 0.00 3.18
587 588 8.681486 AGCAATTTAGTATATCACAGCATTCA 57.319 30.769 0.00 0.00 0.00 2.57
602 603 7.756722 GCACACATTGAAGATTAGCAATTTAGT 59.243 33.333 0.00 0.00 32.74 2.24
603 604 7.756272 TGCACACATTGAAGATTAGCAATTTAG 59.244 33.333 0.00 0.00 32.74 1.85
604 605 7.600960 TGCACACATTGAAGATTAGCAATTTA 58.399 30.769 0.00 0.00 32.74 1.40
605 606 6.457355 TGCACACATTGAAGATTAGCAATTT 58.543 32.000 0.00 0.00 32.74 1.82
606 607 6.028146 TGCACACATTGAAGATTAGCAATT 57.972 33.333 0.00 0.00 32.74 2.32
607 608 5.648178 TGCACACATTGAAGATTAGCAAT 57.352 34.783 0.00 0.00 35.24 3.56
608 609 5.183522 TCATGCACACATTGAAGATTAGCAA 59.816 36.000 0.00 0.00 32.87 3.91
609 610 4.701171 TCATGCACACATTGAAGATTAGCA 59.299 37.500 0.00 0.00 32.87 3.49
610 611 5.032863 GTCATGCACACATTGAAGATTAGC 58.967 41.667 0.00 0.00 32.87 3.09
611 612 6.315642 AGAGTCATGCACACATTGAAGATTAG 59.684 38.462 0.00 0.00 32.87 1.73
645 646 6.464222 TGAATGAAAGAAGGTGGTGTAGTAG 58.536 40.000 0.00 0.00 0.00 2.57
649 650 4.458989 GCATGAATGAAAGAAGGTGGTGTA 59.541 41.667 0.00 0.00 0.00 2.90
650 651 3.256631 GCATGAATGAAAGAAGGTGGTGT 59.743 43.478 0.00 0.00 0.00 4.16
651 652 3.508793 AGCATGAATGAAAGAAGGTGGTG 59.491 43.478 0.00 0.00 0.00 4.17
653 654 3.760151 TCAGCATGAATGAAAGAAGGTGG 59.240 43.478 0.00 0.00 45.97 4.61
675 676 9.546428 GCAGCAGGGTTGATAAATTTATTTATT 57.454 29.630 11.92 0.00 41.59 1.40
676 677 7.867403 CGCAGCAGGGTTGATAAATTTATTTAT 59.133 33.333 11.92 7.29 43.54 1.40
677 678 7.147983 ACGCAGCAGGGTTGATAAATTTATTTA 60.148 33.333 11.92 2.63 37.72 1.40
678 679 6.042143 CGCAGCAGGGTTGATAAATTTATTT 58.958 36.000 11.92 0.00 0.00 1.40
694 703 1.574428 GTTGTTACCACGCAGCAGG 59.426 57.895 0.00 0.00 0.00 4.85
722 731 7.591006 TTTGTTAATACTAGAAGAAGCACCG 57.409 36.000 0.00 0.00 0.00 4.94
808 832 0.040067 GCTCTCGGGTGTTTTGCTTG 60.040 55.000 0.00 0.00 0.00 4.01
819 843 3.123620 GCTTGTGCTGCTCTCGGG 61.124 66.667 0.00 0.00 36.03 5.14
841 865 1.600636 TCGCCAGGCAAACTCCTTG 60.601 57.895 13.30 0.00 38.15 3.61
848 872 1.523154 GATGGTTGTCGCCAGGCAAA 61.523 55.000 13.30 0.00 44.32 3.68
945 1000 4.798344 CTGCTGCTCTGCCCCCTG 62.798 72.222 0.00 0.00 0.00 4.45
975 1035 3.310774 CCGAACTGCTGTTGATGATAAGG 59.689 47.826 14.22 1.17 36.39 2.69
978 1038 2.279741 GCCGAACTGCTGTTGATGATA 58.720 47.619 14.22 0.00 36.39 2.15
979 1039 1.089920 GCCGAACTGCTGTTGATGAT 58.910 50.000 14.22 0.00 36.39 2.45
980 1040 0.955428 GGCCGAACTGCTGTTGATGA 60.955 55.000 14.22 0.00 36.39 2.92
981 1041 1.236616 TGGCCGAACTGCTGTTGATG 61.237 55.000 14.22 3.64 36.39 3.07
1135 1204 4.695231 CCACAACGCAGCAGCAGC 62.695 66.667 0.82 0.00 42.27 5.25
1157 1226 3.243873 TCTTCAGAAGACACGCAAGTCAT 60.244 43.478 8.95 0.00 40.32 3.06
1222 1292 2.810650 CTCGTGTTGTATAGCACCCTC 58.189 52.381 0.99 0.00 34.90 4.30
1224 1294 1.287425 GCTCGTGTTGTATAGCACCC 58.713 55.000 0.99 0.00 34.90 4.61
1231 1301 0.739813 GCTTCCGGCTCGTGTTGTAT 60.740 55.000 0.00 0.00 38.06 2.29
1442 1518 3.809013 GGCCATGGATGACGGGGT 61.809 66.667 18.40 0.00 0.00 4.95
1450 1532 4.488136 TTCTGCGCGGCCATGGAT 62.488 61.111 18.40 0.00 0.00 3.41
1500 1582 2.187946 CGCCTTTCCGCTCTCCAT 59.812 61.111 0.00 0.00 0.00 3.41
1501 1583 2.994995 TCGCCTTTCCGCTCTCCA 60.995 61.111 0.00 0.00 0.00 3.86
1531 1622 2.181777 CCATTGCTGCTGCTGCTG 59.818 61.111 27.67 19.55 40.48 4.41
1532 1623 3.760035 GCCATTGCTGCTGCTGCT 61.760 61.111 27.67 9.87 40.48 4.24
1576 1667 1.625818 TCTTCAGCCCTGTTCTTCTCC 59.374 52.381 0.00 0.00 0.00 3.71
1603 1694 2.262915 GTCTCCTGAGGTGCCGTG 59.737 66.667 0.00 0.00 0.00 4.94
1613 1707 3.963374 TGTATCTGAATCCTGGTCTCCTG 59.037 47.826 0.00 0.00 0.00 3.86
1638 1732 1.144936 GTGGCAATCTCCTCCTCCG 59.855 63.158 0.00 0.00 0.00 4.63
1646 1740 0.737219 GCATCTGGTGTGGCAATCTC 59.263 55.000 0.00 0.00 0.00 2.75
1647 1741 0.682209 GGCATCTGGTGTGGCAATCT 60.682 55.000 0.00 0.00 41.35 2.40
1648 1742 1.669999 GGGCATCTGGTGTGGCAATC 61.670 60.000 0.00 0.00 43.28 2.67
1666 1760 1.227734 ACCACCGTCGTTTCTTGGG 60.228 57.895 0.00 0.00 0.00 4.12
1678 1772 0.034756 TCTTGTCACCATCACCACCG 59.965 55.000 0.00 0.00 0.00 4.94
1744 1841 2.001361 CTACCACGGCGAGGACGATT 62.001 60.000 29.75 9.48 42.66 3.34
1756 1853 2.477880 GGCACCAATTCCTACCACG 58.522 57.895 0.00 0.00 0.00 4.94
1792 1889 2.368221 AGGCAGGATACAGATTCAGAGC 59.632 50.000 0.00 0.00 41.41 4.09
1806 1925 2.325484 TGTTCAGTTAGTCAGGCAGGA 58.675 47.619 0.00 0.00 0.00 3.86
1827 1955 7.648908 CACAAGTTGTCTGCTCATTTTTGAATA 59.351 33.333 5.27 0.00 0.00 1.75
1866 1994 2.556144 TGTTGTGCATCTCTCAGCTT 57.444 45.000 0.00 0.00 0.00 3.74
1868 1996 3.844577 AATTGTTGTGCATCTCTCAGC 57.155 42.857 0.00 0.00 0.00 4.26
1908 2040 5.830991 TGGTTTCTTATTGTTTACAGGCTGT 59.169 36.000 25.34 25.34 0.00 4.40
1943 2099 6.237490 GCTACGTGTTGACATGTTGTATCTAC 60.237 42.308 13.61 0.00 43.01 2.59
1967 2123 2.230660 AGTCCTGCTTTGGTAAACTGC 58.769 47.619 0.00 0.00 0.00 4.40
1978 2134 1.205055 GGCTAGGGTTAGTCCTGCTT 58.795 55.000 0.00 0.00 37.75 3.91
2004 2160 3.444014 TTTATCGTACCGCCGGCCC 62.444 63.158 23.46 5.35 0.00 5.80
2434 2590 2.095364 GCACAAAGTGAAGAGCCTGATG 60.095 50.000 0.58 0.00 35.23 3.07
2664 2836 3.501458 GACCTACGGAGCCGGCATC 62.501 68.421 31.54 21.99 44.69 3.91
2733 2905 2.230940 CGCCGACGTCATCACCATC 61.231 63.158 17.16 0.00 33.53 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.