Multiple sequence alignment - TraesCS4B01G014400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G014400 chr4B 100.000 3662 0 0 1 3662 10516028 10519689 0.000000e+00 6763.0
1 TraesCS4B01G014400 chr4B 92.973 740 48 2 1595 2334 10532501 10533236 0.000000e+00 1075.0
2 TraesCS4B01G014400 chr4B 95.439 570 26 0 2332 2901 10536746 10537315 0.000000e+00 909.0
3 TraesCS4B01G014400 chr4B 93.537 294 9 5 2937 3230 10537390 10537673 2.610000e-116 429.0
4 TraesCS4B01G014400 chr4A 92.975 3274 156 37 432 3662 597726518 597723276 0.000000e+00 4704.0
5 TraesCS4B01G014400 chr4A 95.000 120 6 0 284 403 374633297 374633416 4.830000e-44 189.0
6 TraesCS4B01G014400 chr4D 92.818 2534 104 33 410 2935 5811623 5814086 0.000000e+00 3600.0
7 TraesCS4B01G014400 chr4D 96.505 515 15 3 3150 3662 5814116 5814629 0.000000e+00 848.0
8 TraesCS4B01G014400 chr7B 94.595 592 21 8 2937 3522 16088325 16087739 0.000000e+00 905.0
9 TraesCS4B01G014400 chr7B 93.182 220 13 2 2717 2935 16088597 16088379 4.560000e-84 322.0
10 TraesCS4B01G014400 chr7B 86.145 166 20 3 1 164 624711848 624712012 3.760000e-40 176.0
11 TraesCS4B01G014400 chr7B 85.799 169 18 4 1 163 635028999 635029167 1.350000e-39 174.0
12 TraesCS4B01G014400 chr6B 94.426 592 22 8 2937 3522 96106976 96107562 0.000000e+00 900.0
13 TraesCS4B01G014400 chr6B 93.909 591 26 9 2937 3522 219823089 219822504 0.000000e+00 883.0
14 TraesCS4B01G014400 chr6B 92.727 220 14 2 2717 2935 219823362 219823144 2.120000e-82 316.0
15 TraesCS4B01G014400 chr6B 92.273 220 14 3 2717 2935 96106705 96106922 3.550000e-80 309.0
16 TraesCS4B01G014400 chr6B 97.436 117 3 0 288 404 681374612 681374496 2.230000e-47 200.0
17 TraesCS4B01G014400 chr6B 93.069 101 6 1 2937 3037 711117982 711117883 2.950000e-31 147.0
18 TraesCS4B01G014400 chr6B 95.122 41 1 1 2896 2935 711118076 711118036 3.050000e-06 63.9
19 TraesCS4B01G014400 chr5B 93.739 591 27 8 2937 3522 287634073 287634658 0.000000e+00 878.0
20 TraesCS4B01G014400 chr5B 92.727 220 14 2 2717 2935 287633801 287634019 2.120000e-82 316.0
21 TraesCS4B01G014400 chr5B 86.585 164 17 4 1 159 12663625 12663462 3.760000e-40 176.0
22 TraesCS4B01G014400 chr5B 86.310 168 16 5 1 163 710358259 710358094 3.760000e-40 176.0
23 TraesCS4B01G014400 chr7A 97.458 118 3 0 287 404 641014204 641014087 6.200000e-48 202.0
24 TraesCS4B01G014400 chr7A 96.491 114 4 0 288 401 674005889 674005776 4.830000e-44 189.0
25 TraesCS4B01G014400 chr7A 91.860 86 7 0 1256 1341 549411416 549411331 1.790000e-23 121.0
26 TraesCS4B01G014400 chr7A 100.000 42 0 0 1770 1811 641208229 641208188 1.090000e-10 78.7
27 TraesCS4B01G014400 chr3B 97.458 118 3 0 286 403 566393528 566393411 6.200000e-48 202.0
28 TraesCS4B01G014400 chr2A 95.902 122 4 1 288 409 767808293 767808173 2.880000e-46 196.0
29 TraesCS4B01G014400 chr2A 93.701 127 7 1 288 413 755693154 755693028 4.830000e-44 189.0
30 TraesCS4B01G014400 chr2A 86.145 166 20 3 1 163 755048828 755048993 3.760000e-40 176.0
31 TraesCS4B01G014400 chr5A 96.581 117 4 0 288 404 671198659 671198543 1.040000e-45 195.0
32 TraesCS4B01G014400 chr5A 97.015 67 0 1 1662 1726 637620466 637620400 1.070000e-20 111.0
33 TraesCS4B01G014400 chr3A 96.581 117 3 1 288 404 439913334 439913219 3.730000e-45 193.0
34 TraesCS4B01G014400 chr3A 95.833 72 1 2 1662 1733 28479273 28479204 8.310000e-22 115.0
35 TraesCS4B01G014400 chr3A 95.833 72 1 2 1662 1733 34058451 34058382 8.310000e-22 115.0
36 TraesCS4B01G014400 chr3A 95.833 72 1 2 1662 1733 34260212 34260143 8.310000e-22 115.0
37 TraesCS4B01G014400 chr3A 94.444 72 3 1 1651 1722 652108810 652108740 3.870000e-20 110.0
38 TraesCS4B01G014400 chr3A 97.619 42 1 0 1770 1811 28479206 28479165 5.070000e-09 73.1
39 TraesCS4B01G014400 chr3A 97.619 42 1 0 1770 1811 34058384 34058343 5.070000e-09 73.1
40 TraesCS4B01G014400 chr3A 97.500 40 1 0 1505 1544 34260246 34260207 6.560000e-08 69.4
41 TraesCS4B01G014400 chr3A 100.000 36 0 0 1774 1809 34157555 34157520 2.360000e-07 67.6
42 TraesCS4B01G014400 chr3A 95.238 42 2 0 1503 1544 34157662 34157621 2.360000e-07 67.6
43 TraesCS4B01G014400 chr2B 86.310 168 18 3 1 163 5710927 5711094 1.040000e-40 178.0
44 TraesCS4B01G014400 chr2B 85.799 169 18 4 1 163 40527369 40527537 1.350000e-39 174.0
45 TraesCS4B01G014400 chr6A 85.799 169 19 3 1 164 141408294 141408126 1.350000e-39 174.0
46 TraesCS4B01G014400 chr6A 98.611 72 1 0 1651 1722 601396095 601396166 1.070000e-25 128.0
47 TraesCS4B01G014400 chr6A 88.372 86 10 0 1256 1341 601395938 601396023 1.800000e-18 104.0
48 TraesCS4B01G014400 chr2D 86.228 167 16 5 1 163 557298422 557298585 1.350000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G014400 chr4B 10516028 10519689 3661 False 6763.000000 6763 100.0000 1 3662 1 chr4B.!!$F1 3661
1 TraesCS4B01G014400 chr4B 10532501 10537673 5172 False 804.333333 1075 93.9830 1595 3230 3 chr4B.!!$F2 1635
2 TraesCS4B01G014400 chr4A 597723276 597726518 3242 True 4704.000000 4704 92.9750 432 3662 1 chr4A.!!$R1 3230
3 TraesCS4B01G014400 chr4D 5811623 5814629 3006 False 2224.000000 3600 94.6615 410 3662 2 chr4D.!!$F1 3252
4 TraesCS4B01G014400 chr7B 16087739 16088597 858 True 613.500000 905 93.8885 2717 3522 2 chr7B.!!$R1 805
5 TraesCS4B01G014400 chr6B 96106705 96107562 857 False 604.500000 900 93.3495 2717 3522 2 chr6B.!!$F1 805
6 TraesCS4B01G014400 chr6B 219822504 219823362 858 True 599.500000 883 93.3180 2717 3522 2 chr6B.!!$R2 805
7 TraesCS4B01G014400 chr5B 287633801 287634658 857 False 597.000000 878 93.2330 2717 3522 2 chr5B.!!$F1 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
393 394 0.032403 TCACAAACGGGTCGTACAGG 59.968 55.0 0.0 0.0 39.99 4.00 F
394 395 0.032403 CACAAACGGGTCGTACAGGA 59.968 55.0 0.0 0.0 39.99 3.86 F
1827 1855 0.036294 CCTTCTCCGGTTCCTTCACC 60.036 60.0 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1329 1357 1.186267 ACTCAGGGTTCACGGAGTCC 61.186 60.0 0.0 0.0 41.61 3.85 R
2061 2089 1.349259 CGGTTTCGTAGGCCGTCTTG 61.349 60.0 0.0 0.0 40.53 3.02 R
3108 6706 0.772124 TTCCCACCTCCCTTCTTGCT 60.772 55.0 0.0 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.883354 GGCAAGGGAGGGGCGATG 62.883 72.222 0.00 0.00 0.00 3.84
25 26 3.797353 GCAAGGGAGGGGCGATGA 61.797 66.667 0.00 0.00 0.00 2.92
26 27 2.190578 CAAGGGAGGGGCGATGAC 59.809 66.667 0.00 0.00 0.00 3.06
27 28 3.470888 AAGGGAGGGGCGATGACG 61.471 66.667 0.00 0.00 42.93 4.35
30 31 4.530857 GGAGGGGCGATGACGGTG 62.531 72.222 0.00 0.00 40.15 4.94
31 32 3.458163 GAGGGGCGATGACGGTGA 61.458 66.667 0.00 0.00 40.15 4.02
32 33 3.718210 GAGGGGCGATGACGGTGAC 62.718 68.421 0.00 0.00 40.15 3.67
52 53 3.400007 GCCTTCGGCTCGCTTTAG 58.600 61.111 0.00 0.00 46.69 1.85
53 54 1.448013 GCCTTCGGCTCGCTTTAGT 60.448 57.895 0.00 0.00 46.69 2.24
54 55 1.696832 GCCTTCGGCTCGCTTTAGTG 61.697 60.000 0.00 0.00 46.69 2.74
55 56 1.696832 CCTTCGGCTCGCTTTAGTGC 61.697 60.000 0.00 0.00 0.00 4.40
56 57 0.737715 CTTCGGCTCGCTTTAGTGCT 60.738 55.000 0.00 0.00 0.00 4.40
57 58 0.320421 TTCGGCTCGCTTTAGTGCTT 60.320 50.000 0.00 0.00 0.00 3.91
58 59 1.014044 TCGGCTCGCTTTAGTGCTTG 61.014 55.000 0.00 0.00 0.00 4.01
59 60 1.135523 GGCTCGCTTTAGTGCTTGC 59.864 57.895 0.00 0.00 0.00 4.01
60 61 1.577328 GGCTCGCTTTAGTGCTTGCA 61.577 55.000 0.00 0.00 33.15 4.08
61 62 0.179205 GCTCGCTTTAGTGCTTGCAG 60.179 55.000 0.00 0.00 0.00 4.41
62 63 1.151668 CTCGCTTTAGTGCTTGCAGT 58.848 50.000 8.09 8.09 0.00 4.40
63 64 1.127582 CTCGCTTTAGTGCTTGCAGTC 59.872 52.381 6.19 0.00 0.00 3.51
64 65 0.179240 CGCTTTAGTGCTTGCAGTCG 60.179 55.000 6.19 0.98 0.00 4.18
65 66 0.868406 GCTTTAGTGCTTGCAGTCGT 59.132 50.000 6.19 0.00 0.00 4.34
66 67 1.136224 GCTTTAGTGCTTGCAGTCGTC 60.136 52.381 6.19 0.00 0.00 4.20
67 68 1.125021 CTTTAGTGCTTGCAGTCGTCG 59.875 52.381 6.19 0.00 0.00 5.12
68 69 1.282248 TTAGTGCTTGCAGTCGTCGC 61.282 55.000 6.19 0.00 0.00 5.19
69 70 2.142357 TAGTGCTTGCAGTCGTCGCT 62.142 55.000 6.19 0.00 0.00 4.93
70 71 1.733041 GTGCTTGCAGTCGTCGCTA 60.733 57.895 0.00 0.00 0.00 4.26
71 72 1.444383 TGCTTGCAGTCGTCGCTAG 60.444 57.895 0.00 0.00 35.66 3.42
72 73 2.161486 GCTTGCAGTCGTCGCTAGG 61.161 63.158 0.00 0.00 33.56 3.02
73 74 1.213013 CTTGCAGTCGTCGCTAGGT 59.787 57.895 0.00 0.00 0.00 3.08
74 75 1.073216 CTTGCAGTCGTCGCTAGGTG 61.073 60.000 0.00 0.00 0.00 4.00
75 76 2.202623 GCAGTCGTCGCTAGGTGG 60.203 66.667 0.00 0.00 0.00 4.61
76 77 2.991076 GCAGTCGTCGCTAGGTGGT 61.991 63.158 0.00 0.00 0.00 4.16
77 78 1.136984 CAGTCGTCGCTAGGTGGTC 59.863 63.158 0.00 0.00 0.00 4.02
78 79 1.002379 AGTCGTCGCTAGGTGGTCT 60.002 57.895 0.00 0.00 0.00 3.85
79 80 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
80 81 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
81 82 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
82 83 1.086067 CGTCGCTAGGTGGTCTACGA 61.086 60.000 0.00 0.00 32.96 3.43
83 84 1.089920 GTCGCTAGGTGGTCTACGAA 58.910 55.000 0.00 0.00 35.22 3.85
84 85 1.674962 GTCGCTAGGTGGTCTACGAAT 59.325 52.381 0.00 0.00 35.22 3.34
85 86 1.945394 TCGCTAGGTGGTCTACGAATC 59.055 52.381 0.00 0.00 32.69 2.52
86 87 1.001597 CGCTAGGTGGTCTACGAATCC 60.002 57.143 0.00 0.00 0.00 3.01
87 88 1.001597 GCTAGGTGGTCTACGAATCCG 60.002 57.143 0.00 0.00 42.50 4.18
88 89 2.569059 CTAGGTGGTCTACGAATCCGA 58.431 52.381 0.00 0.00 39.50 4.55
89 90 1.843368 AGGTGGTCTACGAATCCGAA 58.157 50.000 0.00 0.00 39.50 4.30
90 91 2.385803 AGGTGGTCTACGAATCCGAAT 58.614 47.619 0.00 0.00 39.50 3.34
91 92 3.559069 AGGTGGTCTACGAATCCGAATA 58.441 45.455 0.00 0.00 39.50 1.75
92 93 4.150359 AGGTGGTCTACGAATCCGAATAT 58.850 43.478 0.00 0.00 39.50 1.28
93 94 5.319453 AGGTGGTCTACGAATCCGAATATA 58.681 41.667 0.00 0.00 39.50 0.86
94 95 5.771666 AGGTGGTCTACGAATCCGAATATAA 59.228 40.000 0.00 0.00 39.50 0.98
95 96 6.436532 AGGTGGTCTACGAATCCGAATATAAT 59.563 38.462 0.00 0.00 39.50 1.28
96 97 7.039223 AGGTGGTCTACGAATCCGAATATAATT 60.039 37.037 0.00 0.00 39.50 1.40
97 98 7.601508 GGTGGTCTACGAATCCGAATATAATTT 59.398 37.037 0.00 0.00 39.50 1.82
98 99 8.985805 GTGGTCTACGAATCCGAATATAATTTT 58.014 33.333 0.00 0.00 39.50 1.82
99 100 9.550406 TGGTCTACGAATCCGAATATAATTTTT 57.450 29.630 0.00 0.00 39.50 1.94
123 124 8.735692 TTTTGATGCTCATTATACTGTCATGA 57.264 30.769 0.00 0.00 0.00 3.07
124 125 8.913487 TTTGATGCTCATTATACTGTCATGAT 57.087 30.769 0.00 0.00 0.00 2.45
125 126 8.913487 TTGATGCTCATTATACTGTCATGATT 57.087 30.769 0.00 0.00 0.00 2.57
126 127 8.319143 TGATGCTCATTATACTGTCATGATTG 57.681 34.615 0.00 0.00 0.00 2.67
127 128 8.152246 TGATGCTCATTATACTGTCATGATTGA 58.848 33.333 0.00 0.00 0.00 2.57
128 129 8.913487 ATGCTCATTATACTGTCATGATTGAA 57.087 30.769 0.00 0.00 32.48 2.69
129 130 8.374327 TGCTCATTATACTGTCATGATTGAAG 57.626 34.615 0.00 0.00 32.48 3.02
130 131 8.206189 TGCTCATTATACTGTCATGATTGAAGA 58.794 33.333 0.00 0.00 32.48 2.87
131 132 9.217278 GCTCATTATACTGTCATGATTGAAGAT 57.783 33.333 0.00 0.00 32.48 2.40
140 141 9.848710 ACTGTCATGATTGAAGATGAATAGATT 57.151 29.630 0.00 0.00 32.48 2.40
142 143 9.841295 TGTCATGATTGAAGATGAATAGATTGA 57.159 29.630 0.00 0.00 32.48 2.57
152 153 9.913451 GAAGATGAATAGATTGAAAGTTTCTCG 57.087 33.333 16.33 0.00 0.00 4.04
153 154 7.914465 AGATGAATAGATTGAAAGTTTCTCGC 58.086 34.615 16.33 5.77 0.00 5.03
154 155 7.550551 AGATGAATAGATTGAAAGTTTCTCGCA 59.449 33.333 16.33 6.30 0.00 5.10
155 156 7.615582 TGAATAGATTGAAAGTTTCTCGCAT 57.384 32.000 16.33 3.98 0.00 4.73
156 157 8.716646 TGAATAGATTGAAAGTTTCTCGCATA 57.283 30.769 16.33 4.39 0.00 3.14
157 158 9.161629 TGAATAGATTGAAAGTTTCTCGCATAA 57.838 29.630 16.33 2.10 0.00 1.90
158 159 9.988350 GAATAGATTGAAAGTTTCTCGCATAAA 57.012 29.630 16.33 1.41 0.00 1.40
159 160 9.994432 AATAGATTGAAAGTTTCTCGCATAAAG 57.006 29.630 16.33 0.00 0.00 1.85
160 161 7.672983 AGATTGAAAGTTTCTCGCATAAAGA 57.327 32.000 16.33 0.00 0.00 2.52
161 162 8.099364 AGATTGAAAGTTTCTCGCATAAAGAA 57.901 30.769 16.33 0.00 0.00 2.52
162 163 8.567948 AGATTGAAAGTTTCTCGCATAAAGAAA 58.432 29.630 16.33 0.00 39.72 2.52
168 169 4.419522 TTCTCGCATAAAGAAACTTGGC 57.580 40.909 0.00 0.00 30.00 4.52
169 170 2.747446 TCTCGCATAAAGAAACTTGGCC 59.253 45.455 0.00 0.00 0.00 5.36
170 171 2.487762 CTCGCATAAAGAAACTTGGCCA 59.512 45.455 0.00 0.00 0.00 5.36
171 172 2.887783 TCGCATAAAGAAACTTGGCCAA 59.112 40.909 19.25 19.25 0.00 4.52
172 173 3.319405 TCGCATAAAGAAACTTGGCCAAA 59.681 39.130 20.91 1.56 0.00 3.28
173 174 4.021544 TCGCATAAAGAAACTTGGCCAAAT 60.022 37.500 20.91 6.63 0.00 2.32
174 175 4.091800 CGCATAAAGAAACTTGGCCAAATG 59.908 41.667 20.91 17.52 0.00 2.32
175 176 5.237048 GCATAAAGAAACTTGGCCAAATGA 58.763 37.500 20.91 0.00 0.00 2.57
176 177 5.876460 GCATAAAGAAACTTGGCCAAATGAT 59.124 36.000 20.91 6.02 0.00 2.45
177 178 6.036408 GCATAAAGAAACTTGGCCAAATGATC 59.964 38.462 20.91 14.74 0.00 2.92
178 179 5.813513 AAAGAAACTTGGCCAAATGATCT 57.186 34.783 20.91 16.67 0.00 2.75
179 180 5.813513 AAGAAACTTGGCCAAATGATCTT 57.186 34.783 20.91 20.97 0.00 2.40
180 181 5.813513 AGAAACTTGGCCAAATGATCTTT 57.186 34.783 20.91 9.65 0.00 2.52
181 182 6.178607 AGAAACTTGGCCAAATGATCTTTT 57.821 33.333 20.91 9.67 0.00 2.27
182 183 6.594744 AGAAACTTGGCCAAATGATCTTTTT 58.405 32.000 20.91 8.36 0.00 1.94
198 199 2.243602 TTTTTACGCGACTTGTCCCT 57.756 45.000 15.93 0.00 0.00 4.20
199 200 1.504359 TTTTACGCGACTTGTCCCTG 58.496 50.000 15.93 0.00 0.00 4.45
200 201 0.320073 TTTACGCGACTTGTCCCTGG 60.320 55.000 15.93 0.00 0.00 4.45
201 202 2.775032 TTACGCGACTTGTCCCTGGC 62.775 60.000 15.93 0.00 0.00 4.85
204 205 4.760047 CGACTTGTCCCTGGCCGG 62.760 72.222 3.88 3.88 0.00 6.13
205 206 3.637273 GACTTGTCCCTGGCCGGT 61.637 66.667 11.58 0.00 0.00 5.28
206 207 3.607370 GACTTGTCCCTGGCCGGTC 62.607 68.421 11.58 0.00 0.00 4.79
207 208 4.410400 CTTGTCCCTGGCCGGTCC 62.410 72.222 11.58 5.67 0.00 4.46
212 213 4.820744 CCCTGGCCGGTCCCAATG 62.821 72.222 11.58 0.00 33.73 2.82
213 214 4.820744 CCTGGCCGGTCCCAATGG 62.821 72.222 11.58 0.00 33.73 3.16
214 215 4.047125 CTGGCCGGTCCCAATGGT 62.047 66.667 2.12 0.00 33.73 3.55
215 216 3.583882 CTGGCCGGTCCCAATGGTT 62.584 63.158 2.12 0.00 33.73 3.67
216 217 2.283604 GGCCGGTCCCAATGGTTT 60.284 61.111 1.90 0.00 0.00 3.27
217 218 1.000646 GGCCGGTCCCAATGGTTTA 60.001 57.895 1.90 0.00 0.00 2.01
218 219 1.317431 GGCCGGTCCCAATGGTTTAC 61.317 60.000 1.90 0.00 0.00 2.01
219 220 0.323087 GCCGGTCCCAATGGTTTACT 60.323 55.000 1.90 0.00 0.00 2.24
220 221 1.746470 CCGGTCCCAATGGTTTACTC 58.254 55.000 0.00 0.00 0.00 2.59
221 222 1.365699 CGGTCCCAATGGTTTACTCG 58.634 55.000 0.00 0.00 0.00 4.18
222 223 1.092348 GGTCCCAATGGTTTACTCGC 58.908 55.000 0.00 0.00 0.00 5.03
223 224 1.092348 GTCCCAATGGTTTACTCGCC 58.908 55.000 0.00 0.00 0.00 5.54
224 225 0.988832 TCCCAATGGTTTACTCGCCT 59.011 50.000 0.00 0.00 0.00 5.52
225 226 1.353022 TCCCAATGGTTTACTCGCCTT 59.647 47.619 0.00 0.00 0.00 4.35
226 227 2.167662 CCCAATGGTTTACTCGCCTTT 58.832 47.619 0.00 0.00 0.00 3.11
227 228 2.560981 CCCAATGGTTTACTCGCCTTTT 59.439 45.455 0.00 0.00 0.00 2.27
228 229 3.574614 CCAATGGTTTACTCGCCTTTTG 58.425 45.455 0.00 0.00 0.00 2.44
229 230 3.005367 CCAATGGTTTACTCGCCTTTTGT 59.995 43.478 0.00 0.00 0.00 2.83
230 231 4.500716 CCAATGGTTTACTCGCCTTTTGTT 60.501 41.667 0.00 0.00 0.00 2.83
231 232 4.929819 ATGGTTTACTCGCCTTTTGTTT 57.070 36.364 0.00 0.00 0.00 2.83
232 233 6.210078 CAATGGTTTACTCGCCTTTTGTTTA 58.790 36.000 0.00 0.00 0.00 2.01
233 234 5.831702 TGGTTTACTCGCCTTTTGTTTAA 57.168 34.783 0.00 0.00 0.00 1.52
234 235 6.205101 TGGTTTACTCGCCTTTTGTTTAAA 57.795 33.333 0.00 0.00 0.00 1.52
235 236 6.628185 TGGTTTACTCGCCTTTTGTTTAAAA 58.372 32.000 0.00 0.00 34.75 1.52
236 237 6.530887 TGGTTTACTCGCCTTTTGTTTAAAAC 59.469 34.615 0.00 0.00 32.62 2.43
237 238 6.753279 GGTTTACTCGCCTTTTGTTTAAAACT 59.247 34.615 0.00 0.00 32.62 2.66
238 239 7.914871 GGTTTACTCGCCTTTTGTTTAAAACTA 59.085 33.333 0.00 0.00 32.62 2.24
239 240 8.736742 GTTTACTCGCCTTTTGTTTAAAACTAC 58.263 33.333 0.00 0.00 32.62 2.73
240 241 6.688637 ACTCGCCTTTTGTTTAAAACTACT 57.311 33.333 0.00 0.00 32.62 2.57
241 242 7.092137 ACTCGCCTTTTGTTTAAAACTACTT 57.908 32.000 0.00 0.00 32.62 2.24
242 243 8.212317 ACTCGCCTTTTGTTTAAAACTACTTA 57.788 30.769 0.00 0.00 32.62 2.24
243 244 8.124823 ACTCGCCTTTTGTTTAAAACTACTTAC 58.875 33.333 0.00 0.00 32.62 2.34
244 245 8.212317 TCGCCTTTTGTTTAAAACTACTTACT 57.788 30.769 0.00 0.00 32.62 2.24
245 246 9.323985 TCGCCTTTTGTTTAAAACTACTTACTA 57.676 29.630 0.00 0.00 32.62 1.82
246 247 9.934190 CGCCTTTTGTTTAAAACTACTTACTAA 57.066 29.630 0.00 0.00 32.62 2.24
256 257 9.947433 TTAAAACTACTTACTAAATAGCTGGCA 57.053 29.630 0.00 0.00 0.00 4.92
257 258 7.845066 AAACTACTTACTAAATAGCTGGCAC 57.155 36.000 0.00 0.00 0.00 5.01
258 259 6.540438 ACTACTTACTAAATAGCTGGCACA 57.460 37.500 0.00 0.00 0.00 4.57
259 260 6.942976 ACTACTTACTAAATAGCTGGCACAA 58.057 36.000 0.00 0.00 38.70 3.33
260 261 7.391620 ACTACTTACTAAATAGCTGGCACAAA 58.608 34.615 0.00 0.00 38.70 2.83
261 262 7.881232 ACTACTTACTAAATAGCTGGCACAAAA 59.119 33.333 0.00 0.00 38.70 2.44
262 263 7.703058 ACTTACTAAATAGCTGGCACAAAAT 57.297 32.000 0.00 0.00 38.70 1.82
263 264 7.538575 ACTTACTAAATAGCTGGCACAAAATG 58.461 34.615 0.00 0.00 38.70 2.32
264 265 5.329035 ACTAAATAGCTGGCACAAAATGG 57.671 39.130 0.00 0.00 38.70 3.16
265 266 5.016173 ACTAAATAGCTGGCACAAAATGGA 58.984 37.500 0.00 0.00 38.70 3.41
266 267 3.874392 AATAGCTGGCACAAAATGGAC 57.126 42.857 0.00 0.00 38.70 4.02
267 268 2.584835 TAGCTGGCACAAAATGGACT 57.415 45.000 0.00 0.00 38.70 3.85
268 269 2.584835 AGCTGGCACAAAATGGACTA 57.415 45.000 0.00 0.00 38.70 2.59
269 270 2.440409 AGCTGGCACAAAATGGACTAG 58.560 47.619 0.00 0.00 38.70 2.57
270 271 1.474077 GCTGGCACAAAATGGACTAGG 59.526 52.381 0.00 0.00 38.70 3.02
271 272 1.474077 CTGGCACAAAATGGACTAGGC 59.526 52.381 0.00 0.00 38.70 3.93
272 273 1.202989 TGGCACAAAATGGACTAGGCA 60.203 47.619 0.00 0.00 31.92 4.75
273 274 1.892474 GGCACAAAATGGACTAGGCAA 59.108 47.619 0.00 0.00 0.00 4.52
274 275 2.298729 GGCACAAAATGGACTAGGCAAA 59.701 45.455 0.00 0.00 0.00 3.68
275 276 3.055891 GGCACAAAATGGACTAGGCAAAT 60.056 43.478 0.00 0.00 0.00 2.32
276 277 4.563374 GGCACAAAATGGACTAGGCAAATT 60.563 41.667 0.00 0.00 0.00 1.82
277 278 5.337169 GGCACAAAATGGACTAGGCAAATTA 60.337 40.000 0.00 0.00 0.00 1.40
278 279 6.162777 GCACAAAATGGACTAGGCAAATTAA 58.837 36.000 0.00 0.00 0.00 1.40
279 280 6.818142 GCACAAAATGGACTAGGCAAATTAAT 59.182 34.615 0.00 0.00 0.00 1.40
280 281 7.978975 GCACAAAATGGACTAGGCAAATTAATA 59.021 33.333 0.00 0.00 0.00 0.98
283 284 8.981647 CAAAATGGACTAGGCAAATTAATATGC 58.018 33.333 0.00 0.00 41.82 3.14
284 285 5.940192 TGGACTAGGCAAATTAATATGCG 57.060 39.130 0.00 0.00 43.47 4.73
285 286 4.215399 TGGACTAGGCAAATTAATATGCGC 59.785 41.667 0.00 0.00 43.47 6.09
286 287 4.379499 GGACTAGGCAAATTAATATGCGCC 60.379 45.833 4.18 8.55 43.47 6.53
287 288 2.704725 AGGCAAATTAATATGCGCCG 57.295 45.000 4.18 0.00 44.34 6.46
288 289 1.059942 GGCAAATTAATATGCGCCGC 58.940 50.000 4.18 0.00 43.47 6.53
289 290 1.601663 GGCAAATTAATATGCGCCGCA 60.602 47.619 16.69 16.69 43.47 5.69
290 291 2.123342 GCAAATTAATATGCGCCGCAA 58.877 42.857 18.69 6.10 43.62 4.85
291 292 2.537625 GCAAATTAATATGCGCCGCAAA 59.462 40.909 18.69 6.04 43.62 3.68
292 293 3.000724 GCAAATTAATATGCGCCGCAAAA 59.999 39.130 18.69 8.10 43.62 2.44
293 294 4.318689 GCAAATTAATATGCGCCGCAAAAT 60.319 37.500 18.69 10.44 43.62 1.82
294 295 5.107683 GCAAATTAATATGCGCCGCAAAATA 60.108 36.000 18.69 4.23 43.62 1.40
295 296 6.563010 GCAAATTAATATGCGCCGCAAAATAA 60.563 34.615 18.69 15.37 43.62 1.40
296 297 7.508965 CAAATTAATATGCGCCGCAAAATAAT 58.491 30.769 18.69 16.91 43.62 1.28
297 298 6.869421 ATTAATATGCGCCGCAAAATAATC 57.131 33.333 18.69 0.00 43.62 1.75
298 299 2.697431 TATGCGCCGCAAAATAATCC 57.303 45.000 18.69 0.00 43.62 3.01
299 300 1.032014 ATGCGCCGCAAAATAATCCT 58.968 45.000 18.69 0.00 43.62 3.24
300 301 0.100325 TGCGCCGCAAAATAATCCTG 59.900 50.000 10.46 0.00 34.76 3.86
301 302 0.100503 GCGCCGCAAAATAATCCTGT 59.899 50.000 3.15 0.00 0.00 4.00
302 303 1.332375 GCGCCGCAAAATAATCCTGTA 59.668 47.619 3.15 0.00 0.00 2.74
303 304 2.853281 GCGCCGCAAAATAATCCTGTAC 60.853 50.000 3.15 0.00 0.00 2.90
304 305 2.598907 CGCCGCAAAATAATCCTGTACG 60.599 50.000 0.00 0.00 0.00 3.67
305 306 2.610374 GCCGCAAAATAATCCTGTACGA 59.390 45.455 0.00 0.00 0.00 3.43
306 307 3.545426 GCCGCAAAATAATCCTGTACGAC 60.545 47.826 0.00 0.00 0.00 4.34
307 308 3.001939 CCGCAAAATAATCCTGTACGACC 59.998 47.826 0.00 0.00 0.00 4.79
308 309 3.302221 CGCAAAATAATCCTGTACGACCG 60.302 47.826 0.00 0.00 0.00 4.79
309 310 3.001939 GCAAAATAATCCTGTACGACCGG 59.998 47.826 0.00 0.00 0.00 5.28
310 311 3.464111 AAATAATCCTGTACGACCGGG 57.536 47.619 6.32 0.00 0.00 5.73
311 312 2.077687 ATAATCCTGTACGACCGGGT 57.922 50.000 6.32 0.00 0.00 5.28
312 313 1.392589 TAATCCTGTACGACCGGGTC 58.607 55.000 17.38 17.38 0.00 4.46
323 324 4.183686 CCGGGTCGTACGTGCGAT 62.184 66.667 30.44 0.00 43.07 4.58
324 325 2.649975 CGGGTCGTACGTGCGATC 60.650 66.667 30.44 29.23 43.07 3.69
326 327 2.486504 GGTCGTACGTGCGATCCA 59.513 61.111 30.44 6.54 43.07 3.41
327 328 1.585521 GGTCGTACGTGCGATCCAG 60.586 63.158 30.44 0.00 43.07 3.86
328 329 2.101575 TCGTACGTGCGATCCAGC 59.898 61.111 24.89 0.00 35.83 4.85
329 330 2.954868 CGTACGTGCGATCCAGCC 60.955 66.667 21.98 0.00 36.02 4.85
330 331 2.954868 GTACGTGCGATCCAGCCG 60.955 66.667 0.00 0.00 37.04 5.52
346 347 4.020617 CGCAAGGGGAGGCTGTCA 62.021 66.667 0.00 0.00 0.00 3.58
347 348 2.045536 GCAAGGGGAGGCTGTCAG 60.046 66.667 0.00 0.00 0.00 3.51
348 349 2.673523 CAAGGGGAGGCTGTCAGG 59.326 66.667 1.14 0.00 0.00 3.86
349 350 2.208349 AAGGGGAGGCTGTCAGGT 59.792 61.111 1.14 0.00 0.00 4.00
350 351 2.227036 AAGGGGAGGCTGTCAGGTG 61.227 63.158 1.14 0.00 0.00 4.00
351 352 3.721706 GGGGAGGCTGTCAGGTGG 61.722 72.222 1.14 0.00 0.00 4.61
352 353 3.721706 GGGAGGCTGTCAGGTGGG 61.722 72.222 1.14 0.00 0.00 4.61
353 354 2.930562 GGAGGCTGTCAGGTGGGT 60.931 66.667 1.14 0.00 0.00 4.51
354 355 2.665603 GAGGCTGTCAGGTGGGTC 59.334 66.667 1.14 0.00 0.00 4.46
355 356 2.122413 AGGCTGTCAGGTGGGTCA 60.122 61.111 1.14 0.00 0.00 4.02
356 357 2.032681 GGCTGTCAGGTGGGTCAC 59.967 66.667 1.14 0.00 0.00 3.67
368 369 4.065281 GGTCACCCCCACGACGAG 62.065 72.222 0.00 0.00 32.74 4.18
369 370 4.736896 GTCACCCCCACGACGAGC 62.737 72.222 0.00 0.00 0.00 5.03
370 371 4.988716 TCACCCCCACGACGAGCT 62.989 66.667 0.00 0.00 0.00 4.09
371 372 4.436998 CACCCCCACGACGAGCTC 62.437 72.222 2.73 2.73 0.00 4.09
372 373 4.680537 ACCCCCACGACGAGCTCT 62.681 66.667 12.85 0.00 0.00 4.09
373 374 3.827898 CCCCCACGACGAGCTCTC 61.828 72.222 12.85 7.57 0.00 3.20
374 375 2.752238 CCCCACGACGAGCTCTCT 60.752 66.667 12.85 0.00 0.00 3.10
375 376 2.766400 CCCCACGACGAGCTCTCTC 61.766 68.421 12.85 5.21 35.99 3.20
376 377 2.041115 CCCACGACGAGCTCTCTCA 61.041 63.158 12.85 0.00 39.30 3.27
377 378 1.135731 CCACGACGAGCTCTCTCAC 59.864 63.158 12.85 0.00 39.30 3.51
378 379 1.578206 CCACGACGAGCTCTCTCACA 61.578 60.000 12.85 0.00 39.30 3.58
379 380 0.238553 CACGACGAGCTCTCTCACAA 59.761 55.000 12.85 0.00 39.30 3.33
380 381 0.952280 ACGACGAGCTCTCTCACAAA 59.048 50.000 12.85 0.00 39.30 2.83
381 382 1.332178 CGACGAGCTCTCTCACAAAC 58.668 55.000 12.85 0.00 39.30 2.93
382 383 1.332178 GACGAGCTCTCTCACAAACG 58.668 55.000 12.85 0.00 39.30 3.60
383 384 0.039074 ACGAGCTCTCTCACAAACGG 60.039 55.000 12.85 0.00 39.30 4.44
384 385 0.734253 CGAGCTCTCTCACAAACGGG 60.734 60.000 12.85 0.00 39.30 5.28
385 386 0.318762 GAGCTCTCTCACAAACGGGT 59.681 55.000 6.43 0.00 39.16 5.28
386 387 0.318762 AGCTCTCTCACAAACGGGTC 59.681 55.000 0.00 0.00 0.00 4.46
387 388 1.009389 GCTCTCTCACAAACGGGTCG 61.009 60.000 0.00 0.00 0.00 4.79
388 389 0.314302 CTCTCTCACAAACGGGTCGT 59.686 55.000 0.00 0.00 43.97 4.34
389 390 1.538512 CTCTCTCACAAACGGGTCGTA 59.461 52.381 0.00 0.00 39.99 3.43
390 391 1.267806 TCTCTCACAAACGGGTCGTAC 59.732 52.381 0.00 0.00 39.99 3.67
391 392 1.001048 CTCTCACAAACGGGTCGTACA 60.001 52.381 0.00 0.00 39.99 2.90
392 393 1.001048 TCTCACAAACGGGTCGTACAG 60.001 52.381 0.00 0.00 39.99 2.74
393 394 0.032403 TCACAAACGGGTCGTACAGG 59.968 55.000 0.00 0.00 39.99 4.00
394 395 0.032403 CACAAACGGGTCGTACAGGA 59.968 55.000 0.00 0.00 39.99 3.86
395 396 0.971386 ACAAACGGGTCGTACAGGAT 59.029 50.000 0.00 0.00 39.99 3.24
396 397 1.345415 ACAAACGGGTCGTACAGGATT 59.655 47.619 0.00 0.00 39.99 3.01
397 398 1.997606 CAAACGGGTCGTACAGGATTC 59.002 52.381 0.00 0.00 39.99 2.52
398 399 0.171903 AACGGGTCGTACAGGATTCG 59.828 55.000 0.00 0.00 39.99 3.34
399 400 1.588139 CGGGTCGTACAGGATTCGC 60.588 63.158 0.00 0.00 0.00 4.70
400 401 1.227176 GGGTCGTACAGGATTCGCC 60.227 63.158 0.00 0.00 0.00 5.54
402 403 0.248949 GGTCGTACAGGATTCGCCTC 60.249 60.000 0.00 0.00 46.97 4.70
403 404 0.248949 GTCGTACAGGATTCGCCTCC 60.249 60.000 0.00 0.00 46.97 4.30
404 405 0.681887 TCGTACAGGATTCGCCTCCA 60.682 55.000 5.97 0.00 46.97 3.86
405 406 0.174845 CGTACAGGATTCGCCTCCAA 59.825 55.000 5.97 0.00 46.97 3.53
406 407 1.202533 CGTACAGGATTCGCCTCCAAT 60.203 52.381 5.97 0.00 46.97 3.16
407 408 2.741878 CGTACAGGATTCGCCTCCAATT 60.742 50.000 5.97 0.00 46.97 2.32
408 409 3.491964 CGTACAGGATTCGCCTCCAATTA 60.492 47.826 5.97 0.00 46.97 1.40
488 489 0.817634 TCAAACTTCCACCTGCCACG 60.818 55.000 0.00 0.00 0.00 4.94
534 538 2.931512 ATTTTTACCGGCCAATCACG 57.068 45.000 0.00 0.00 0.00 4.35
574 578 6.278363 TCATTAGTTTAAGGATCGCCTACAC 58.722 40.000 0.00 0.00 46.28 2.90
575 579 5.664294 TTAGTTTAAGGATCGCCTACACA 57.336 39.130 0.00 0.00 46.28 3.72
576 580 4.546829 AGTTTAAGGATCGCCTACACAA 57.453 40.909 0.00 0.00 46.28 3.33
578 582 5.497474 AGTTTAAGGATCGCCTACACAAAT 58.503 37.500 0.00 0.00 46.28 2.32
579 583 6.646267 AGTTTAAGGATCGCCTACACAAATA 58.354 36.000 0.00 0.00 46.28 1.40
580 584 6.761714 AGTTTAAGGATCGCCTACACAAATAG 59.238 38.462 0.00 0.00 46.28 1.73
581 585 6.474140 TTAAGGATCGCCTACACAAATAGA 57.526 37.500 0.00 0.00 46.28 1.98
582 586 5.353394 AAGGATCGCCTACACAAATAGAA 57.647 39.130 0.00 0.00 46.28 2.10
583 587 5.552870 AGGATCGCCTACACAAATAGAAT 57.447 39.130 0.00 0.00 44.74 2.40
584 588 5.300752 AGGATCGCCTACACAAATAGAATG 58.699 41.667 0.00 0.00 44.74 2.67
585 589 5.070446 AGGATCGCCTACACAAATAGAATGA 59.930 40.000 0.00 0.00 44.74 2.57
586 590 5.177696 GGATCGCCTACACAAATAGAATGAC 59.822 44.000 0.00 0.00 0.00 3.06
587 591 4.109766 TCGCCTACACAAATAGAATGACG 58.890 43.478 0.00 0.00 0.00 4.35
588 592 3.245284 CGCCTACACAAATAGAATGACGG 59.755 47.826 0.00 0.00 0.00 4.79
589 593 3.560068 GCCTACACAAATAGAATGACGGG 59.440 47.826 0.00 0.00 0.00 5.28
697 701 0.179029 ACGGACCAAACTCCACCTTG 60.179 55.000 0.00 0.00 0.00 3.61
823 830 4.778143 CCGGCCGTCCTTCCTTGG 62.778 72.222 26.12 0.00 0.00 3.61
828 835 4.394712 CGTCCTTCCTTGGCGCCT 62.395 66.667 29.70 0.00 0.00 5.52
843 850 0.384309 CGCCTCTCCTACATAACGCA 59.616 55.000 0.00 0.00 0.00 5.24
847 854 2.431057 CCTCTCCTACATAACGCACCTT 59.569 50.000 0.00 0.00 0.00 3.50
917 924 3.736100 CAACTCGCCATTGCCGCA 61.736 61.111 0.00 0.00 0.00 5.69
918 925 3.737172 AACTCGCCATTGCCGCAC 61.737 61.111 0.00 0.00 0.00 5.34
919 926 4.704833 ACTCGCCATTGCCGCACT 62.705 61.111 0.00 0.00 0.00 4.40
920 927 2.511373 CTCGCCATTGCCGCACTA 60.511 61.111 0.00 0.00 0.00 2.74
921 928 2.511373 TCGCCATTGCCGCACTAG 60.511 61.111 0.00 0.00 0.00 2.57
950 967 2.025441 GTAGCTCTCTCTGCGGCG 59.975 66.667 0.51 0.51 35.28 6.46
973 990 3.862402 CGAGGAGAGCGCGTACGT 61.862 66.667 17.90 0.00 42.83 3.57
974 991 2.277373 GAGGAGAGCGCGTACGTG 60.277 66.667 23.94 23.94 42.83 4.49
975 992 2.745100 AGGAGAGCGCGTACGTGA 60.745 61.111 31.45 0.00 42.83 4.35
976 993 2.177531 GGAGAGCGCGTACGTGAA 59.822 61.111 31.45 0.00 42.83 3.18
977 994 1.868251 GGAGAGCGCGTACGTGAAG 60.868 63.158 31.45 14.29 42.83 3.02
978 995 1.868251 GAGAGCGCGTACGTGAAGG 60.868 63.158 31.45 10.08 42.83 3.46
979 996 2.126580 GAGCGCGTACGTGAAGGT 60.127 61.111 31.45 17.85 42.83 3.50
980 997 1.731969 GAGCGCGTACGTGAAGGTT 60.732 57.895 31.45 10.91 42.83 3.50
981 998 1.941476 GAGCGCGTACGTGAAGGTTG 61.941 60.000 31.45 5.88 42.83 3.77
982 999 2.017783 GCGCGTACGTGAAGGTTGA 61.018 57.895 31.45 0.00 42.83 3.18
983 1000 1.941476 GCGCGTACGTGAAGGTTGAG 61.941 60.000 31.45 4.86 42.83 3.02
984 1001 0.386352 CGCGTACGTGAAGGTTGAGA 60.386 55.000 23.95 0.00 33.53 3.27
985 1002 1.337821 GCGTACGTGAAGGTTGAGAG 58.662 55.000 17.90 0.00 0.00 3.20
986 1003 1.068748 GCGTACGTGAAGGTTGAGAGA 60.069 52.381 17.90 0.00 0.00 3.10
987 1004 2.606308 GCGTACGTGAAGGTTGAGAGAA 60.606 50.000 17.90 0.00 0.00 2.87
988 1005 3.235195 CGTACGTGAAGGTTGAGAGAAG 58.765 50.000 7.22 0.00 0.00 2.85
989 1006 2.821991 ACGTGAAGGTTGAGAGAAGG 57.178 50.000 0.00 0.00 0.00 3.46
990 1007 1.344763 ACGTGAAGGTTGAGAGAAGGG 59.655 52.381 0.00 0.00 0.00 3.95
991 1008 1.344763 CGTGAAGGTTGAGAGAAGGGT 59.655 52.381 0.00 0.00 0.00 4.34
1221 1249 1.227380 GGTGCTCTACATGGCCTCG 60.227 63.158 3.32 0.00 0.00 4.63
1323 1351 2.363147 GTCAGGGAGCCCGTCTCT 60.363 66.667 0.00 0.00 41.60 3.10
1377 1405 1.433534 CGAGGAAGAAGCAGGTGTTC 58.566 55.000 0.00 0.00 0.00 3.18
1380 1408 0.868406 GGAAGAAGCAGGTGTTCGTG 59.132 55.000 0.00 0.00 0.00 4.35
1638 1666 1.617947 GGACACCCCTCGAGATTGCT 61.618 60.000 15.71 0.00 0.00 3.91
1761 1789 2.348059 CGATGTCTTGAAGCTGCTTCTC 59.652 50.000 34.44 23.80 40.73 2.87
1786 1814 4.821589 CCGCGTCTGCTTCTCCCC 62.822 72.222 4.92 0.00 39.65 4.81
1791 1819 2.283894 TCTGCTTCTCCCCGCTCA 60.284 61.111 0.00 0.00 0.00 4.26
1800 1828 3.237741 CCCCGCTCATCCTCCTCC 61.238 72.222 0.00 0.00 0.00 4.30
1801 1829 2.123077 CCCGCTCATCCTCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
1802 1830 2.206536 CCCGCTCATCCTCCTCCTC 61.207 68.421 0.00 0.00 0.00 3.71
1827 1855 0.036294 CCTTCTCCGGTTCCTTCACC 60.036 60.000 0.00 0.00 0.00 4.02
1860 1888 2.610859 GGGAGGGAGGGCAAGACA 60.611 66.667 0.00 0.00 0.00 3.41
2481 6021 4.586235 AAGGTGGTGCGGCTGCTT 62.586 61.111 20.27 0.00 43.34 3.91
2685 6225 3.181463 GGTTGGTAAACTTTGGGGGTTTC 60.181 47.826 0.00 0.00 37.88 2.78
2693 6233 1.339929 CTTTGGGGGTTTCGGTTGAAG 59.660 52.381 0.00 0.00 35.06 3.02
2758 6298 4.964897 TGATTAGTCAGGTGAGATGGTGAT 59.035 41.667 0.00 0.00 0.00 3.06
2878 6418 4.337274 TGCTCTCATGTTGCAATAAGATGG 59.663 41.667 0.59 0.00 33.48 3.51
2901 6441 7.832769 TGGTGCTTTTCTTTAGTTGTACTTTT 58.167 30.769 0.00 0.00 0.00 2.27
2935 6476 4.293662 ACTCTGGTTTCTCTTTGGATCC 57.706 45.455 4.20 4.20 0.00 3.36
2997 6594 3.084786 GTTGAGGTTAAGAGGCTTGCAT 58.915 45.455 0.00 0.00 0.00 3.96
3018 6616 5.572211 CATTGACGGTTCTATTTCACCATG 58.428 41.667 0.00 0.00 31.84 3.66
3024 6622 5.300792 ACGGTTCTATTTCACCATGTTTGTT 59.699 36.000 0.00 0.00 31.84 2.83
3107 6705 1.674962 GAGCTTGATGGAGAATGCCAC 59.325 52.381 0.00 0.00 41.56 5.01
3108 6706 1.005097 AGCTTGATGGAGAATGCCACA 59.995 47.619 0.00 0.00 41.56 4.17
3440 7040 4.180817 TGAACTACGGTGTGATAGCATTG 58.819 43.478 0.00 0.00 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.883354 CATCGCCCCTCCCTTGCC 62.883 72.222 0.00 0.00 0.00 4.52
8 9 3.797353 TCATCGCCCCTCCCTTGC 61.797 66.667 0.00 0.00 0.00 4.01
9 10 2.190578 GTCATCGCCCCTCCCTTG 59.809 66.667 0.00 0.00 0.00 3.61
10 11 3.470888 CGTCATCGCCCCTCCCTT 61.471 66.667 0.00 0.00 0.00 3.95
13 14 4.530857 CACCGTCATCGCCCCTCC 62.531 72.222 0.00 0.00 35.54 4.30
14 15 3.458163 TCACCGTCATCGCCCCTC 61.458 66.667 0.00 0.00 35.54 4.30
15 16 3.771160 GTCACCGTCATCGCCCCT 61.771 66.667 0.00 0.00 35.54 4.79
21 22 4.796231 AGGCGCGTCACCGTCATC 62.796 66.667 15.58 0.00 34.80 2.92
22 23 4.373116 AAGGCGCGTCACCGTCAT 62.373 61.111 15.58 0.00 34.80 3.06
37 38 0.737715 AGCACTAAAGCGAGCCGAAG 60.738 55.000 0.00 0.00 40.15 3.79
38 39 0.320421 AAGCACTAAAGCGAGCCGAA 60.320 50.000 0.00 0.00 40.15 4.30
39 40 1.014044 CAAGCACTAAAGCGAGCCGA 61.014 55.000 0.00 0.00 40.15 5.54
40 41 1.421485 CAAGCACTAAAGCGAGCCG 59.579 57.895 0.00 0.00 40.15 5.52
41 42 1.135523 GCAAGCACTAAAGCGAGCC 59.864 57.895 0.00 0.00 40.15 4.70
42 43 0.179205 CTGCAAGCACTAAAGCGAGC 60.179 55.000 0.00 0.00 40.15 5.03
43 44 1.127582 GACTGCAAGCACTAAAGCGAG 59.872 52.381 0.00 0.00 37.60 5.03
44 45 1.148310 GACTGCAAGCACTAAAGCGA 58.852 50.000 0.00 0.00 37.60 4.93
45 46 0.179240 CGACTGCAAGCACTAAAGCG 60.179 55.000 0.00 0.00 37.60 4.68
46 47 0.868406 ACGACTGCAAGCACTAAAGC 59.132 50.000 0.00 0.00 37.60 3.51
47 48 1.125021 CGACGACTGCAAGCACTAAAG 59.875 52.381 0.00 0.00 37.60 1.85
48 49 1.136690 CGACGACTGCAAGCACTAAA 58.863 50.000 0.00 0.00 37.60 1.85
49 50 1.282248 GCGACGACTGCAAGCACTAA 61.282 55.000 0.00 0.00 37.60 2.24
50 51 1.733041 GCGACGACTGCAAGCACTA 60.733 57.895 0.00 0.00 37.60 2.74
51 52 2.142357 TAGCGACGACTGCAAGCACT 62.142 55.000 0.00 0.00 37.60 4.40
52 53 1.678269 CTAGCGACGACTGCAAGCAC 61.678 60.000 0.00 0.00 37.60 4.40
53 54 1.444383 CTAGCGACGACTGCAAGCA 60.444 57.895 0.00 0.00 37.60 3.91
54 55 2.161486 CCTAGCGACGACTGCAAGC 61.161 63.158 0.00 0.00 37.60 4.01
55 56 1.073216 CACCTAGCGACGACTGCAAG 61.073 60.000 0.00 0.00 42.29 4.01
56 57 1.080772 CACCTAGCGACGACTGCAA 60.081 57.895 0.00 0.00 33.85 4.08
57 58 2.566529 CACCTAGCGACGACTGCA 59.433 61.111 0.00 0.00 33.85 4.41
58 59 2.202623 CCACCTAGCGACGACTGC 60.203 66.667 0.00 0.00 0.00 4.40
59 60 1.136984 GACCACCTAGCGACGACTG 59.863 63.158 0.00 0.00 0.00 3.51
60 61 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
61 62 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
62 63 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
63 64 1.086067 TCGTAGACCACCTAGCGACG 61.086 60.000 0.00 0.00 31.20 5.12
64 65 1.089920 TTCGTAGACCACCTAGCGAC 58.910 55.000 0.00 0.00 34.32 5.19
65 66 1.945394 GATTCGTAGACCACCTAGCGA 59.055 52.381 0.00 0.00 34.32 4.93
66 67 1.001597 GGATTCGTAGACCACCTAGCG 60.002 57.143 0.00 0.00 34.32 4.26
67 68 1.001597 CGGATTCGTAGACCACCTAGC 60.002 57.143 0.00 0.00 34.32 3.42
68 69 2.569059 TCGGATTCGTAGACCACCTAG 58.431 52.381 0.00 0.00 34.32 3.02
69 70 2.715749 TCGGATTCGTAGACCACCTA 57.284 50.000 0.00 0.00 34.32 3.08
70 71 1.843368 TTCGGATTCGTAGACCACCT 58.157 50.000 0.00 0.00 34.32 4.00
71 72 2.884894 ATTCGGATTCGTAGACCACC 57.115 50.000 0.00 0.00 34.32 4.61
72 73 8.530269 AAATTATATTCGGATTCGTAGACCAC 57.470 34.615 0.00 0.00 34.32 4.16
73 74 9.550406 AAAAATTATATTCGGATTCGTAGACCA 57.450 29.630 0.00 0.00 34.32 4.02
102 103 8.543862 TCAATCATGACAGTATAATGAGCATC 57.456 34.615 7.27 0.00 34.02 3.91
103 104 8.913487 TTCAATCATGACAGTATAATGAGCAT 57.087 30.769 7.27 7.24 34.61 3.79
104 105 8.206189 TCTTCAATCATGACAGTATAATGAGCA 58.794 33.333 7.27 5.18 34.61 4.26
105 106 8.599055 TCTTCAATCATGACAGTATAATGAGC 57.401 34.615 7.27 0.00 34.61 4.26
114 115 9.848710 AATCTATTCATCTTCAATCATGACAGT 57.151 29.630 0.00 0.00 34.61 3.55
116 117 9.841295 TCAATCTATTCATCTTCAATCATGACA 57.159 29.630 0.00 0.00 34.61 3.58
126 127 9.913451 CGAGAAACTTTCAATCTATTCATCTTC 57.087 33.333 4.34 0.00 0.00 2.87
127 128 8.394121 GCGAGAAACTTTCAATCTATTCATCTT 58.606 33.333 4.34 0.00 0.00 2.40
128 129 7.550551 TGCGAGAAACTTTCAATCTATTCATCT 59.449 33.333 4.34 0.00 0.00 2.90
129 130 7.688372 TGCGAGAAACTTTCAATCTATTCATC 58.312 34.615 4.34 0.00 0.00 2.92
130 131 7.615582 TGCGAGAAACTTTCAATCTATTCAT 57.384 32.000 4.34 0.00 0.00 2.57
131 132 7.615582 ATGCGAGAAACTTTCAATCTATTCA 57.384 32.000 4.34 0.00 0.00 2.57
132 133 9.988350 TTTATGCGAGAAACTTTCAATCTATTC 57.012 29.630 4.34 0.00 0.00 1.75
133 134 9.994432 CTTTATGCGAGAAACTTTCAATCTATT 57.006 29.630 4.34 0.00 0.00 1.73
134 135 9.383519 TCTTTATGCGAGAAACTTTCAATCTAT 57.616 29.630 4.34 0.00 0.00 1.98
135 136 8.771920 TCTTTATGCGAGAAACTTTCAATCTA 57.228 30.769 4.34 0.00 0.00 1.98
136 137 7.672983 TCTTTATGCGAGAAACTTTCAATCT 57.327 32.000 4.34 0.00 0.00 2.40
137 138 8.728088 TTTCTTTATGCGAGAAACTTTCAATC 57.272 30.769 4.34 0.00 38.00 2.67
146 147 4.320935 GGCCAAGTTTCTTTATGCGAGAAA 60.321 41.667 0.00 0.00 39.95 2.52
147 148 3.190535 GGCCAAGTTTCTTTATGCGAGAA 59.809 43.478 0.00 0.00 0.00 2.87
148 149 2.747446 GGCCAAGTTTCTTTATGCGAGA 59.253 45.455 0.00 0.00 0.00 4.04
149 150 2.487762 TGGCCAAGTTTCTTTATGCGAG 59.512 45.455 0.61 0.00 0.00 5.03
150 151 2.509569 TGGCCAAGTTTCTTTATGCGA 58.490 42.857 0.61 0.00 0.00 5.10
151 152 3.296322 TTGGCCAAGTTTCTTTATGCG 57.704 42.857 16.05 0.00 0.00 4.73
152 153 5.237048 TCATTTGGCCAAGTTTCTTTATGC 58.763 37.500 19.48 0.00 0.00 3.14
153 154 7.325694 AGATCATTTGGCCAAGTTTCTTTATG 58.674 34.615 19.48 16.18 0.00 1.90
154 155 7.486407 AGATCATTTGGCCAAGTTTCTTTAT 57.514 32.000 19.48 3.54 0.00 1.40
155 156 6.916360 AGATCATTTGGCCAAGTTTCTTTA 57.084 33.333 19.48 0.77 0.00 1.85
156 157 5.813513 AGATCATTTGGCCAAGTTTCTTT 57.186 34.783 19.48 1.17 0.00 2.52
157 158 5.813513 AAGATCATTTGGCCAAGTTTCTT 57.186 34.783 19.48 20.66 0.00 2.52
158 159 5.813513 AAAGATCATTTGGCCAAGTTTCT 57.186 34.783 19.48 16.33 0.00 2.52
159 160 6.866010 AAAAAGATCATTTGGCCAAGTTTC 57.134 33.333 19.48 14.38 0.00 2.78
179 180 1.868498 CAGGGACAAGTCGCGTAAAAA 59.132 47.619 5.77 0.00 45.79 1.94
180 181 1.504359 CAGGGACAAGTCGCGTAAAA 58.496 50.000 5.77 0.00 45.79 1.52
181 182 0.320073 CCAGGGACAAGTCGCGTAAA 60.320 55.000 5.77 0.00 45.79 2.01
182 183 1.290955 CCAGGGACAAGTCGCGTAA 59.709 57.895 5.77 0.00 45.79 3.18
183 184 2.967397 CCAGGGACAAGTCGCGTA 59.033 61.111 5.77 0.00 45.79 4.42
184 185 4.681978 GCCAGGGACAAGTCGCGT 62.682 66.667 5.77 0.00 45.79 6.01
187 188 4.760047 CCGGCCAGGGACAAGTCG 62.760 72.222 2.24 0.00 35.97 4.18
188 189 3.607370 GACCGGCCAGGGACAAGTC 62.607 68.421 16.44 0.00 46.96 3.01
189 190 3.637273 GACCGGCCAGGGACAAGT 61.637 66.667 16.44 0.00 46.96 3.16
190 191 4.410400 GGACCGGCCAGGGACAAG 62.410 72.222 16.44 0.00 46.96 3.16
195 196 4.820744 CATTGGGACCGGCCAGGG 62.821 72.222 16.44 6.84 46.96 4.45
197 198 3.583882 AACCATTGGGACCGGCCAG 62.584 63.158 15.49 0.00 38.95 4.85
198 199 1.790635 TAAACCATTGGGACCGGCCA 61.791 55.000 15.49 6.97 38.95 5.36
199 200 1.000646 TAAACCATTGGGACCGGCC 60.001 57.895 0.00 3.33 38.05 6.13
200 201 0.323087 AGTAAACCATTGGGACCGGC 60.323 55.000 0.00 0.00 38.05 6.13
201 202 1.746470 GAGTAAACCATTGGGACCGG 58.254 55.000 7.78 0.00 38.05 5.28
202 203 1.365699 CGAGTAAACCATTGGGACCG 58.634 55.000 7.78 4.84 38.05 4.79
203 204 1.092348 GCGAGTAAACCATTGGGACC 58.908 55.000 7.78 0.00 38.05 4.46
204 205 1.092348 GGCGAGTAAACCATTGGGAC 58.908 55.000 7.78 2.24 38.05 4.46
205 206 0.988832 AGGCGAGTAAACCATTGGGA 59.011 50.000 7.78 0.00 38.05 4.37
206 207 1.834188 AAGGCGAGTAAACCATTGGG 58.166 50.000 7.78 0.00 41.29 4.12
207 208 3.005367 ACAAAAGGCGAGTAAACCATTGG 59.995 43.478 0.00 0.00 32.41 3.16
208 209 4.237349 ACAAAAGGCGAGTAAACCATTG 57.763 40.909 0.00 0.00 33.61 2.82
209 210 4.929819 AACAAAAGGCGAGTAAACCATT 57.070 36.364 0.00 0.00 0.00 3.16
210 211 4.929819 AAACAAAAGGCGAGTAAACCAT 57.070 36.364 0.00 0.00 0.00 3.55
211 212 5.831702 TTAAACAAAAGGCGAGTAAACCA 57.168 34.783 0.00 0.00 0.00 3.67
212 213 6.753279 AGTTTTAAACAAAAGGCGAGTAAACC 59.247 34.615 10.60 0.00 0.00 3.27
213 214 7.745022 AGTTTTAAACAAAAGGCGAGTAAAC 57.255 32.000 10.60 0.00 0.00 2.01
214 215 8.676401 AGTAGTTTTAAACAAAAGGCGAGTAAA 58.324 29.630 10.60 0.00 0.00 2.01
215 216 8.212317 AGTAGTTTTAAACAAAAGGCGAGTAA 57.788 30.769 10.60 0.00 0.00 2.24
216 217 7.790823 AGTAGTTTTAAACAAAAGGCGAGTA 57.209 32.000 10.60 0.00 0.00 2.59
217 218 6.688637 AGTAGTTTTAAACAAAAGGCGAGT 57.311 33.333 10.60 0.00 0.00 4.18
218 219 8.340443 AGTAAGTAGTTTTAAACAAAAGGCGAG 58.660 33.333 10.60 0.00 0.00 5.03
219 220 8.212317 AGTAAGTAGTTTTAAACAAAAGGCGA 57.788 30.769 10.60 0.00 0.00 5.54
220 221 9.934190 TTAGTAAGTAGTTTTAAACAAAAGGCG 57.066 29.630 10.60 0.00 0.00 5.52
230 231 9.947433 TGCCAGCTATTTAGTAAGTAGTTTTAA 57.053 29.630 12.49 0.00 0.00 1.52
231 232 9.374838 GTGCCAGCTATTTAGTAAGTAGTTTTA 57.625 33.333 12.49 0.00 0.00 1.52
232 233 7.881232 TGTGCCAGCTATTTAGTAAGTAGTTTT 59.119 33.333 12.49 0.00 0.00 2.43
233 234 7.391620 TGTGCCAGCTATTTAGTAAGTAGTTT 58.608 34.615 12.49 1.63 0.00 2.66
234 235 6.942976 TGTGCCAGCTATTTAGTAAGTAGTT 58.057 36.000 12.49 5.39 0.00 2.24
235 236 6.540438 TGTGCCAGCTATTTAGTAAGTAGT 57.460 37.500 12.49 0.07 0.00 2.73
236 237 7.843490 TTTGTGCCAGCTATTTAGTAAGTAG 57.157 36.000 7.83 7.83 0.00 2.57
237 238 8.673711 CATTTTGTGCCAGCTATTTAGTAAGTA 58.326 33.333 0.00 0.00 0.00 2.24
238 239 7.362920 CCATTTTGTGCCAGCTATTTAGTAAGT 60.363 37.037 0.00 0.00 0.00 2.24
239 240 6.974622 CCATTTTGTGCCAGCTATTTAGTAAG 59.025 38.462 0.00 0.00 0.00 2.34
240 241 6.661377 TCCATTTTGTGCCAGCTATTTAGTAA 59.339 34.615 0.00 0.00 0.00 2.24
241 242 6.094881 GTCCATTTTGTGCCAGCTATTTAGTA 59.905 38.462 0.00 0.00 0.00 1.82
242 243 5.016173 TCCATTTTGTGCCAGCTATTTAGT 58.984 37.500 0.00 0.00 0.00 2.24
243 244 5.126061 AGTCCATTTTGTGCCAGCTATTTAG 59.874 40.000 0.00 0.00 0.00 1.85
244 245 5.016173 AGTCCATTTTGTGCCAGCTATTTA 58.984 37.500 0.00 0.00 0.00 1.40
245 246 3.834231 AGTCCATTTTGTGCCAGCTATTT 59.166 39.130 0.00 0.00 0.00 1.40
246 247 3.434309 AGTCCATTTTGTGCCAGCTATT 58.566 40.909 0.00 0.00 0.00 1.73
247 248 3.091633 AGTCCATTTTGTGCCAGCTAT 57.908 42.857 0.00 0.00 0.00 2.97
248 249 2.584835 AGTCCATTTTGTGCCAGCTA 57.415 45.000 0.00 0.00 0.00 3.32
249 250 2.440409 CTAGTCCATTTTGTGCCAGCT 58.560 47.619 0.00 0.00 0.00 4.24
250 251 1.474077 CCTAGTCCATTTTGTGCCAGC 59.526 52.381 0.00 0.00 0.00 4.85
251 252 1.474077 GCCTAGTCCATTTTGTGCCAG 59.526 52.381 0.00 0.00 0.00 4.85
252 253 1.202989 TGCCTAGTCCATTTTGTGCCA 60.203 47.619 0.00 0.00 0.00 4.92
253 254 1.544724 TGCCTAGTCCATTTTGTGCC 58.455 50.000 0.00 0.00 0.00 5.01
254 255 3.658757 TTTGCCTAGTCCATTTTGTGC 57.341 42.857 0.00 0.00 0.00 4.57
257 258 8.981647 GCATATTAATTTGCCTAGTCCATTTTG 58.018 33.333 17.22 0.00 32.66 2.44
258 259 7.867403 CGCATATTAATTTGCCTAGTCCATTTT 59.133 33.333 20.70 0.00 35.41 1.82
259 260 7.370383 CGCATATTAATTTGCCTAGTCCATTT 58.630 34.615 20.70 0.00 35.41 2.32
260 261 6.570378 GCGCATATTAATTTGCCTAGTCCATT 60.570 38.462 20.70 0.00 35.41 3.16
261 262 5.106157 GCGCATATTAATTTGCCTAGTCCAT 60.106 40.000 20.70 0.00 35.41 3.41
262 263 4.215399 GCGCATATTAATTTGCCTAGTCCA 59.785 41.667 20.70 0.00 35.41 4.02
263 264 4.379499 GGCGCATATTAATTTGCCTAGTCC 60.379 45.833 20.70 12.35 39.38 3.85
264 265 4.669197 CGGCGCATATTAATTTGCCTAGTC 60.669 45.833 20.70 10.63 40.31 2.59
265 266 3.188460 CGGCGCATATTAATTTGCCTAGT 59.812 43.478 20.70 0.00 40.31 2.57
266 267 3.747193 CGGCGCATATTAATTTGCCTAG 58.253 45.455 20.70 11.05 40.31 3.02
267 268 2.095466 GCGGCGCATATTAATTTGCCTA 60.095 45.455 29.21 0.00 40.31 3.93
268 269 1.335872 GCGGCGCATATTAATTTGCCT 60.336 47.619 29.21 0.00 40.31 4.75
269 270 1.059942 GCGGCGCATATTAATTTGCC 58.940 50.000 29.21 14.59 39.10 4.52
270 271 1.764851 TGCGGCGCATATTAATTTGC 58.235 45.000 33.07 17.85 31.71 3.68
271 272 4.768659 TTTTGCGGCGCATATTAATTTG 57.231 36.364 36.69 0.00 38.76 2.32
272 273 7.148656 GGATTATTTTGCGGCGCATATTAATTT 60.149 33.333 32.29 22.32 38.76 1.82
273 274 6.310224 GGATTATTTTGCGGCGCATATTAATT 59.690 34.615 32.29 24.14 38.76 1.40
274 275 5.804979 GGATTATTTTGCGGCGCATATTAAT 59.195 36.000 32.32 32.32 38.76 1.40
275 276 5.048364 AGGATTATTTTGCGGCGCATATTAA 60.048 36.000 36.69 31.33 38.76 1.40
276 277 4.457603 AGGATTATTTTGCGGCGCATATTA 59.542 37.500 36.69 25.82 38.76 0.98
277 278 3.255642 AGGATTATTTTGCGGCGCATATT 59.744 39.130 36.69 26.86 38.76 1.28
278 279 2.819608 AGGATTATTTTGCGGCGCATAT 59.180 40.909 36.69 30.15 38.76 1.78
279 280 2.031245 CAGGATTATTTTGCGGCGCATA 60.031 45.455 36.69 28.50 38.76 3.14
280 281 1.032014 AGGATTATTTTGCGGCGCAT 58.968 45.000 36.69 23.54 38.76 4.73
281 282 0.100325 CAGGATTATTTTGCGGCGCA 59.900 50.000 33.07 33.07 36.47 6.09
282 283 0.100503 ACAGGATTATTTTGCGGCGC 59.899 50.000 27.44 27.44 0.00 6.53
283 284 2.598907 CGTACAGGATTATTTTGCGGCG 60.599 50.000 0.51 0.51 0.00 6.46
284 285 2.610374 TCGTACAGGATTATTTTGCGGC 59.390 45.455 0.00 0.00 0.00 6.53
285 286 3.001939 GGTCGTACAGGATTATTTTGCGG 59.998 47.826 0.00 0.00 0.00 5.69
286 287 3.302221 CGGTCGTACAGGATTATTTTGCG 60.302 47.826 0.00 0.00 0.00 4.85
287 288 3.001939 CCGGTCGTACAGGATTATTTTGC 59.998 47.826 0.00 0.00 35.32 3.68
288 289 3.558418 CCCGGTCGTACAGGATTATTTTG 59.442 47.826 0.00 0.00 35.32 2.44
289 290 3.198417 ACCCGGTCGTACAGGATTATTTT 59.802 43.478 0.00 0.00 35.32 1.82
290 291 2.767960 ACCCGGTCGTACAGGATTATTT 59.232 45.455 0.00 0.00 35.32 1.40
291 292 2.363359 GACCCGGTCGTACAGGATTATT 59.637 50.000 0.65 0.00 35.32 1.40
292 293 1.959282 GACCCGGTCGTACAGGATTAT 59.041 52.381 0.65 0.00 35.32 1.28
293 294 1.392589 GACCCGGTCGTACAGGATTA 58.607 55.000 0.65 0.00 35.32 1.75
294 295 2.196319 GACCCGGTCGTACAGGATT 58.804 57.895 0.65 0.00 35.32 3.01
295 296 3.930504 GACCCGGTCGTACAGGAT 58.069 61.111 0.65 0.00 35.32 3.24
306 307 4.183686 ATCGCACGTACGACCCGG 62.184 66.667 24.41 6.76 46.28 5.73
307 308 2.649975 GATCGCACGTACGACCCG 60.650 66.667 24.41 19.44 46.28 5.28
308 309 2.278401 GGATCGCACGTACGACCC 60.278 66.667 24.41 9.94 46.28 4.46
309 310 1.585521 CTGGATCGCACGTACGACC 60.586 63.158 24.41 16.25 46.28 4.79
310 311 2.222217 GCTGGATCGCACGTACGAC 61.222 63.158 24.41 12.52 46.28 4.34
312 313 2.954868 GGCTGGATCGCACGTACG 60.955 66.667 15.01 15.01 0.00 3.67
313 314 2.954868 CGGCTGGATCGCACGTAC 60.955 66.667 0.00 0.00 0.00 3.67
321 322 3.764160 CTCCCCTTGCGGCTGGATC 62.764 68.421 12.79 0.00 0.00 3.36
322 323 3.801997 CTCCCCTTGCGGCTGGAT 61.802 66.667 12.79 0.00 0.00 3.41
328 329 4.785453 GACAGCCTCCCCTTGCGG 62.785 72.222 0.00 0.00 0.00 5.69
329 330 3.965539 CTGACAGCCTCCCCTTGCG 62.966 68.421 0.00 0.00 0.00 4.85
330 331 2.045536 CTGACAGCCTCCCCTTGC 60.046 66.667 0.00 0.00 0.00 4.01
331 332 2.227036 ACCTGACAGCCTCCCCTTG 61.227 63.158 0.00 0.00 0.00 3.61
332 333 2.208349 ACCTGACAGCCTCCCCTT 59.792 61.111 0.00 0.00 0.00 3.95
333 334 2.608988 CACCTGACAGCCTCCCCT 60.609 66.667 0.00 0.00 0.00 4.79
334 335 3.721706 CCACCTGACAGCCTCCCC 61.722 72.222 0.00 0.00 0.00 4.81
335 336 3.721706 CCCACCTGACAGCCTCCC 61.722 72.222 0.00 0.00 0.00 4.30
336 337 2.930562 ACCCACCTGACAGCCTCC 60.931 66.667 0.00 0.00 0.00 4.30
337 338 2.217038 TGACCCACCTGACAGCCTC 61.217 63.158 0.00 0.00 0.00 4.70
338 339 2.122413 TGACCCACCTGACAGCCT 60.122 61.111 0.00 0.00 0.00 4.58
339 340 2.032681 GTGACCCACCTGACAGCC 59.967 66.667 0.00 0.00 0.00 4.85
352 353 4.736896 GCTCGTCGTGGGGGTGAC 62.737 72.222 0.00 0.00 0.00 3.67
353 354 4.988716 AGCTCGTCGTGGGGGTGA 62.989 66.667 0.00 0.00 0.00 4.02
354 355 4.436998 GAGCTCGTCGTGGGGGTG 62.437 72.222 0.00 0.00 0.00 4.61
355 356 4.680537 AGAGCTCGTCGTGGGGGT 62.681 66.667 8.37 0.00 0.00 4.95
356 357 3.827898 GAGAGCTCGTCGTGGGGG 61.828 72.222 8.37 0.00 0.00 5.40
357 358 2.752238 AGAGAGCTCGTCGTGGGG 60.752 66.667 8.37 0.00 34.09 4.96
358 359 2.041115 TGAGAGAGCTCGTCGTGGG 61.041 63.158 8.37 0.00 44.33 4.61
359 360 1.135731 GTGAGAGAGCTCGTCGTGG 59.864 63.158 8.37 0.00 44.33 4.94
360 361 0.238553 TTGTGAGAGAGCTCGTCGTG 59.761 55.000 8.37 0.00 44.33 4.35
361 362 0.952280 TTTGTGAGAGAGCTCGTCGT 59.048 50.000 8.37 0.00 44.33 4.34
362 363 1.332178 GTTTGTGAGAGAGCTCGTCG 58.668 55.000 8.37 0.00 44.33 5.12
363 364 1.332178 CGTTTGTGAGAGAGCTCGTC 58.668 55.000 8.37 10.03 44.33 4.20
364 365 0.039074 CCGTTTGTGAGAGAGCTCGT 60.039 55.000 8.37 0.00 44.33 4.18
365 366 0.734253 CCCGTTTGTGAGAGAGCTCG 60.734 60.000 8.37 0.00 44.33 5.03
366 367 0.318762 ACCCGTTTGTGAGAGAGCTC 59.681 55.000 5.27 5.27 41.67 4.09
367 368 0.318762 GACCCGTTTGTGAGAGAGCT 59.681 55.000 0.00 0.00 0.00 4.09
368 369 1.009389 CGACCCGTTTGTGAGAGAGC 61.009 60.000 0.00 0.00 0.00 4.09
369 370 0.314302 ACGACCCGTTTGTGAGAGAG 59.686 55.000 0.00 0.00 36.35 3.20
370 371 1.267806 GTACGACCCGTTTGTGAGAGA 59.732 52.381 0.00 0.00 41.54 3.10
371 372 1.001048 TGTACGACCCGTTTGTGAGAG 60.001 52.381 0.00 0.00 41.54 3.20
372 373 1.001048 CTGTACGACCCGTTTGTGAGA 60.001 52.381 0.00 0.00 41.54 3.27
373 374 1.415374 CTGTACGACCCGTTTGTGAG 58.585 55.000 0.00 0.00 41.54 3.51
374 375 0.032403 CCTGTACGACCCGTTTGTGA 59.968 55.000 0.00 0.00 41.54 3.58
375 376 0.032403 TCCTGTACGACCCGTTTGTG 59.968 55.000 0.00 0.00 41.54 3.33
376 377 0.971386 ATCCTGTACGACCCGTTTGT 59.029 50.000 0.00 0.00 41.54 2.83
377 378 1.997606 GAATCCTGTACGACCCGTTTG 59.002 52.381 0.00 0.00 41.54 2.93
378 379 1.403249 CGAATCCTGTACGACCCGTTT 60.403 52.381 0.00 0.00 41.54 3.60
379 380 0.171903 CGAATCCTGTACGACCCGTT 59.828 55.000 0.00 0.00 41.54 4.44
380 381 1.805254 CGAATCCTGTACGACCCGT 59.195 57.895 0.00 0.00 44.35 5.28
381 382 1.588139 GCGAATCCTGTACGACCCG 60.588 63.158 0.00 0.00 0.00 5.28
382 383 1.227176 GGCGAATCCTGTACGACCC 60.227 63.158 0.00 0.00 0.00 4.46
383 384 1.814527 AGGCGAATCCTGTACGACC 59.185 57.895 0.00 0.00 45.54 4.79
392 393 5.710099 TGGAATATTAATTGGAGGCGAATCC 59.290 40.000 0.00 0.00 40.03 3.01
393 394 6.817765 TGGAATATTAATTGGAGGCGAATC 57.182 37.500 0.00 0.00 0.00 2.52
394 395 7.595819 TTTGGAATATTAATTGGAGGCGAAT 57.404 32.000 0.00 0.00 0.00 3.34
395 396 7.069331 ACATTTGGAATATTAATTGGAGGCGAA 59.931 33.333 0.00 0.00 0.00 4.70
396 397 6.549364 ACATTTGGAATATTAATTGGAGGCGA 59.451 34.615 0.00 0.00 0.00 5.54
397 398 6.642131 CACATTTGGAATATTAATTGGAGGCG 59.358 38.462 0.00 0.00 0.00 5.52
398 399 7.653311 GTCACATTTGGAATATTAATTGGAGGC 59.347 37.037 0.00 0.00 0.00 4.70
399 400 8.694540 TGTCACATTTGGAATATTAATTGGAGG 58.305 33.333 0.00 0.00 0.00 4.30
400 401 9.520204 GTGTCACATTTGGAATATTAATTGGAG 57.480 33.333 0.00 0.00 0.00 3.86
401 402 8.187480 CGTGTCACATTTGGAATATTAATTGGA 58.813 33.333 3.42 0.00 0.00 3.53
402 403 7.043458 GCGTGTCACATTTGGAATATTAATTGG 60.043 37.037 3.42 0.00 0.00 3.16
403 404 7.701924 AGCGTGTCACATTTGGAATATTAATTG 59.298 33.333 3.42 0.00 0.00 2.32
404 405 7.771183 AGCGTGTCACATTTGGAATATTAATT 58.229 30.769 3.42 0.00 0.00 1.40
405 406 7.333528 AGCGTGTCACATTTGGAATATTAAT 57.666 32.000 3.42 0.00 0.00 1.40
406 407 6.751514 AGCGTGTCACATTTGGAATATTAA 57.248 33.333 3.42 0.00 0.00 1.40
407 408 7.269316 TCTAGCGTGTCACATTTGGAATATTA 58.731 34.615 3.42 0.00 0.00 0.98
408 409 6.112734 TCTAGCGTGTCACATTTGGAATATT 58.887 36.000 3.42 0.00 0.00 1.28
488 489 8.937634 ATCAGATTTCCAATCAATTTTGTAGC 57.062 30.769 0.00 0.00 0.00 3.58
520 524 1.216977 CAGACGTGATTGGCCGGTA 59.783 57.895 1.90 0.00 0.00 4.02
524 528 0.109597 CAAAGCAGACGTGATTGGCC 60.110 55.000 0.00 0.00 30.96 5.36
561 565 5.070446 TCATTCTATTTGTGTAGGCGATCCT 59.930 40.000 0.00 0.00 46.57 3.24
566 570 3.245284 CCGTCATTCTATTTGTGTAGGCG 59.755 47.826 0.00 0.00 0.00 5.52
574 578 1.949525 CTGCCCCCGTCATTCTATTTG 59.050 52.381 0.00 0.00 0.00 2.32
575 579 1.843851 TCTGCCCCCGTCATTCTATTT 59.156 47.619 0.00 0.00 0.00 1.40
576 580 1.141053 GTCTGCCCCCGTCATTCTATT 59.859 52.381 0.00 0.00 0.00 1.73
578 582 1.672854 CGTCTGCCCCCGTCATTCTA 61.673 60.000 0.00 0.00 0.00 2.10
579 583 2.990479 GTCTGCCCCCGTCATTCT 59.010 61.111 0.00 0.00 0.00 2.40
580 584 2.511600 CGTCTGCCCCCGTCATTC 60.512 66.667 0.00 0.00 0.00 2.67
581 585 4.096003 CCGTCTGCCCCCGTCATT 62.096 66.667 0.00 0.00 0.00 2.57
609 613 2.282180 GGAAACTTCCCGGCTGCA 60.282 61.111 0.50 0.00 41.62 4.41
697 701 4.111916 CCATTCGCCATTGTTTAATGACC 58.888 43.478 1.80 0.00 45.21 4.02
818 825 1.690219 ATGTAGGAGAGGCGCCAAGG 61.690 60.000 31.54 0.00 0.00 3.61
819 826 1.040646 TATGTAGGAGAGGCGCCAAG 58.959 55.000 31.54 0.00 0.00 3.61
820 827 1.138266 GTTATGTAGGAGAGGCGCCAA 59.862 52.381 31.54 6.84 0.00 4.52
821 828 0.750850 GTTATGTAGGAGAGGCGCCA 59.249 55.000 31.54 4.96 0.00 5.69
822 829 0.318784 CGTTATGTAGGAGAGGCGCC 60.319 60.000 21.89 21.89 0.00 6.53
823 830 0.940047 GCGTTATGTAGGAGAGGCGC 60.940 60.000 0.00 0.00 36.97 6.53
824 831 0.384309 TGCGTTATGTAGGAGAGGCG 59.616 55.000 0.00 0.00 0.00 5.52
825 832 1.538419 GGTGCGTTATGTAGGAGAGGC 60.538 57.143 0.00 0.00 0.00 4.70
826 833 2.032620 AGGTGCGTTATGTAGGAGAGG 58.967 52.381 0.00 0.00 0.00 3.69
827 834 3.130516 TGAAGGTGCGTTATGTAGGAGAG 59.869 47.826 0.00 0.00 0.00 3.20
828 835 3.093814 TGAAGGTGCGTTATGTAGGAGA 58.906 45.455 0.00 0.00 0.00 3.71
843 850 0.972883 GGAGTGAGAGCAGTGAAGGT 59.027 55.000 0.00 0.00 0.00 3.50
847 854 1.345741 CAAAGGGAGTGAGAGCAGTGA 59.654 52.381 0.00 0.00 0.00 3.41
917 924 1.698506 CTACCAGCTAGCAGGCTAGT 58.301 55.000 24.91 9.00 45.67 2.57
918 925 0.316841 GCTACCAGCTAGCAGGCTAG 59.683 60.000 24.91 22.57 46.56 3.42
919 926 2.431023 GCTACCAGCTAGCAGGCTA 58.569 57.895 24.91 14.99 46.56 3.93
920 927 3.225235 GCTACCAGCTAGCAGGCT 58.775 61.111 24.91 14.68 46.56 4.58
970 987 1.344763 CCCTTCTCTCAACCTTCACGT 59.655 52.381 0.00 0.00 0.00 4.49
971 988 1.344763 ACCCTTCTCTCAACCTTCACG 59.655 52.381 0.00 0.00 0.00 4.35
972 989 2.551071 CCACCCTTCTCTCAACCTTCAC 60.551 54.545 0.00 0.00 0.00 3.18
973 990 1.699634 CCACCCTTCTCTCAACCTTCA 59.300 52.381 0.00 0.00 0.00 3.02
974 991 1.003696 CCCACCCTTCTCTCAACCTTC 59.996 57.143 0.00 0.00 0.00 3.46
975 992 1.068121 CCCACCCTTCTCTCAACCTT 58.932 55.000 0.00 0.00 0.00 3.50
976 993 0.104409 ACCCACCCTTCTCTCAACCT 60.104 55.000 0.00 0.00 0.00 3.50
977 994 0.325272 GACCCACCCTTCTCTCAACC 59.675 60.000 0.00 0.00 0.00 3.77
978 995 0.037232 CGACCCACCCTTCTCTCAAC 60.037 60.000 0.00 0.00 0.00 3.18
979 996 0.178944 TCGACCCACCCTTCTCTCAA 60.179 55.000 0.00 0.00 0.00 3.02
980 997 0.612174 CTCGACCCACCCTTCTCTCA 60.612 60.000 0.00 0.00 0.00 3.27
981 998 0.323542 TCTCGACCCACCCTTCTCTC 60.324 60.000 0.00 0.00 0.00 3.20
982 999 0.336737 ATCTCGACCCACCCTTCTCT 59.663 55.000 0.00 0.00 0.00 3.10
983 1000 0.461961 CATCTCGACCCACCCTTCTC 59.538 60.000 0.00 0.00 0.00 2.87
984 1001 0.978146 CCATCTCGACCCACCCTTCT 60.978 60.000 0.00 0.00 0.00 2.85
985 1002 0.976073 TCCATCTCGACCCACCCTTC 60.976 60.000 0.00 0.00 0.00 3.46
986 1003 1.080354 TCCATCTCGACCCACCCTT 59.920 57.895 0.00 0.00 0.00 3.95
987 1004 1.686110 GTCCATCTCGACCCACCCT 60.686 63.158 0.00 0.00 0.00 4.34
988 1005 2.732619 GGTCCATCTCGACCCACCC 61.733 68.421 0.00 0.00 45.72 4.61
989 1006 2.901042 GGTCCATCTCGACCCACC 59.099 66.667 0.00 0.00 45.72 4.61
1323 1351 3.611674 TTCACGGAGTCCAGCGCA 61.612 61.111 11.47 0.00 41.61 6.09
1329 1357 1.186267 ACTCAGGGTTCACGGAGTCC 61.186 60.000 0.00 0.00 41.61 3.85
1786 1814 2.560119 CGGAGGAGGAGGATGAGCG 61.560 68.421 0.00 0.00 0.00 5.03
1791 1819 1.458588 GGAAGCGGAGGAGGAGGAT 60.459 63.158 0.00 0.00 0.00 3.24
1800 1828 1.889530 AACCGGAGAAGGAAGCGGAG 61.890 60.000 9.46 0.00 34.73 4.63
1801 1829 1.885163 GAACCGGAGAAGGAAGCGGA 61.885 60.000 9.46 0.00 34.73 5.54
1802 1830 1.448013 GAACCGGAGAAGGAAGCGG 60.448 63.158 9.46 0.00 34.73 5.52
2061 2089 1.349259 CGGTTTCGTAGGCCGTCTTG 61.349 60.000 0.00 0.00 40.53 3.02
2412 5952 3.703127 GTCCTCCCCTTCGCCGTT 61.703 66.667 0.00 0.00 0.00 4.44
2442 5982 4.560743 TTGCCTGTCACCGCTGCA 62.561 61.111 0.00 0.00 0.00 4.41
2685 6225 3.679502 GGCCATTTCATTTTCTTCAACCG 59.320 43.478 0.00 0.00 0.00 4.44
2693 6233 1.470890 TCGACGGGCCATTTCATTTTC 59.529 47.619 4.39 0.00 0.00 2.29
2758 6298 8.936864 TCGCTTCCTTGAAAAACAAATTAAAAA 58.063 25.926 0.00 0.00 38.08 1.94
2901 6441 7.939039 AGAGAAACCAGAGTTCAAAACATGATA 59.061 33.333 0.00 0.00 38.03 2.15
2997 6594 4.647611 ACATGGTGAAATAGAACCGTCAA 58.352 39.130 0.00 0.00 39.47 3.18
3107 6705 1.001641 CCCACCTCCCTTCTTGCTG 60.002 63.158 0.00 0.00 0.00 4.41
3108 6706 0.772124 TTCCCACCTCCCTTCTTGCT 60.772 55.000 0.00 0.00 0.00 3.91
3198 6796 9.494271 GATGCACTTACATATCTCCTAAATTGA 57.506 33.333 0.00 0.00 0.00 2.57
3316 6916 6.012745 AGCTTGATAATTCAATGGGGGATAC 58.987 40.000 0.00 0.00 40.95 2.24
3365 6965 9.407380 TGGAAGCAATTAGATACATGTGTAATT 57.593 29.630 9.11 11.75 33.76 1.40
3512 7119 9.413048 CAAGTCTAAGGTTCAGAGTTTTAGTAG 57.587 37.037 0.00 0.00 34.21 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.