Multiple sequence alignment - TraesCS4B01G013800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G013800 chr4B 100.000 6344 0 0 1 6344 9708997 9702654 0.000000e+00 11716.0
1 TraesCS4B01G013800 chr4B 85.152 559 76 6 1 557 27030818 27031371 3.320000e-157 566.0
2 TraesCS4B01G013800 chr4D 94.216 2818 112 23 2009 4810 5585778 5582996 0.000000e+00 4253.0
3 TraesCS4B01G013800 chr4D 91.566 1328 56 16 4790 6096 5582979 5581687 0.000000e+00 1781.0
4 TraesCS4B01G013800 chr4D 84.669 1148 83 42 868 1979 5586865 5585775 0.000000e+00 1059.0
5 TraesCS4B01G013800 chr4D 80.315 381 57 8 5964 6344 5574434 5574072 8.100000e-69 272.0
6 TraesCS4B01G013800 chr4D 86.260 262 11 6 741 980 5589033 5588775 1.750000e-65 261.0
7 TraesCS4B01G013800 chr4A 93.826 1652 72 10 3156 4793 597914304 597915939 0.000000e+00 2459.0
8 TraesCS4B01G013800 chr4A 91.075 1591 72 20 4789 6344 597915972 597917527 0.000000e+00 2087.0
9 TraesCS4B01G013800 chr4A 94.721 682 25 8 2474 3151 597913590 597914264 0.000000e+00 1050.0
10 TraesCS4B01G013800 chr4A 87.464 686 31 23 744 1395 597912013 597912677 0.000000e+00 739.0
11 TraesCS4B01G013800 chr4A 89.046 566 29 11 1896 2446 597913047 597913594 0.000000e+00 671.0
12 TraesCS4B01G013800 chr4A 87.591 274 19 5 1506 1776 597912759 597913020 2.870000e-78 303.0
13 TraesCS4B01G013800 chrUn 89.054 877 58 20 1299 2174 110375169 110374330 0.000000e+00 1053.0
14 TraesCS4B01G013800 chrUn 84.982 566 77 7 1 564 429036758 429036199 9.230000e-158 568.0
15 TraesCS4B01G013800 chrUn 84.629 566 79 7 1 564 282275387 282274828 2.000000e-154 556.0
16 TraesCS4B01G013800 chrUn 84.629 566 79 7 1 564 282277973 282277414 2.000000e-154 556.0
17 TraesCS4B01G013800 chr7D 88.826 877 60 20 1299 2174 439001431 439000592 0.000000e+00 1042.0
18 TraesCS4B01G013800 chr7D 88.018 893 62 24 1283 2174 427383282 427384130 0.000000e+00 1014.0
19 TraesCS4B01G013800 chr7D 87.794 893 68 23 1283 2174 117425308 117426160 0.000000e+00 1007.0
20 TraesCS4B01G013800 chr7D 100.000 31 0 0 5887 5917 253341904 253341934 2.470000e-04 58.4
21 TraesCS4B01G013800 chr6D 88.354 893 60 23 1283 2174 270896715 270897564 0.000000e+00 1033.0
22 TraesCS4B01G013800 chr6D 87.692 65 3 4 5856 5917 85798379 85798441 3.170000e-08 71.3
23 TraesCS4B01G013800 chr3D 88.004 892 67 21 1283 2174 478941578 478940727 0.000000e+00 1018.0
24 TraesCS4B01G013800 chr3D 88.258 775 52 21 1299 2072 19075916 19075180 0.000000e+00 891.0
25 TraesCS4B01G013800 chr1D 88.018 893 66 22 1283 2174 408674403 408675255 0.000000e+00 1018.0
26 TraesCS4B01G013800 chr6B 84.656 567 77 9 1 564 719555550 719554991 2.000000e-154 556.0
27 TraesCS4B01G013800 chr6B 84.656 567 77 9 1 564 719573686 719573127 2.000000e-154 556.0
28 TraesCS4B01G013800 chr6B 84.629 566 79 7 1 564 719575214 719574655 2.000000e-154 556.0
29 TraesCS4B01G013800 chr6B 84.656 567 77 9 1 564 719578270 719577711 2.000000e-154 556.0
30 TraesCS4B01G013800 chr6B 84.656 567 77 9 1 564 719579798 719579239 2.000000e-154 556.0
31 TraesCS4B01G013800 chr2D 92.797 236 14 3 1939 2174 77943835 77943603 7.880000e-89 339.0
32 TraesCS4B01G013800 chr2D 90.541 74 5 2 5853 5925 145889616 145889544 5.240000e-16 97.1
33 TraesCS4B01G013800 chr2B 88.372 86 7 3 5853 5936 206113918 206113834 4.050000e-17 100.0
34 TraesCS4B01G013800 chr5D 91.803 61 4 1 5853 5913 10472117 10472058 4.080000e-12 84.2
35 TraesCS4B01G013800 chr2A 88.571 70 7 1 5853 5921 156371178 156371247 4.080000e-12 84.2
36 TraesCS4B01G013800 chr5A 90.164 61 5 1 5853 5913 8187954 8187895 1.900000e-10 78.7
37 TraesCS4B01G013800 chr6A 88.525 61 2 4 5860 5917 103001026 103001084 1.140000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G013800 chr4B 9702654 9708997 6343 True 11716.000000 11716 100.00000 1 6344 1 chr4B.!!$R1 6343
1 TraesCS4B01G013800 chr4B 27030818 27031371 553 False 566.000000 566 85.15200 1 557 1 chr4B.!!$F1 556
2 TraesCS4B01G013800 chr4D 5581687 5589033 7346 True 1838.500000 4253 89.17775 741 6096 4 chr4D.!!$R2 5355
3 TraesCS4B01G013800 chr4A 597912013 597917527 5514 False 1218.166667 2459 90.62050 744 6344 6 chr4A.!!$F1 5600
4 TraesCS4B01G013800 chrUn 110374330 110375169 839 True 1053.000000 1053 89.05400 1299 2174 1 chrUn.!!$R1 875
5 TraesCS4B01G013800 chrUn 429036199 429036758 559 True 568.000000 568 84.98200 1 564 1 chrUn.!!$R2 563
6 TraesCS4B01G013800 chrUn 282274828 282277973 3145 True 556.000000 556 84.62900 1 564 2 chrUn.!!$R3 563
7 TraesCS4B01G013800 chr7D 439000592 439001431 839 True 1042.000000 1042 88.82600 1299 2174 1 chr7D.!!$R1 875
8 TraesCS4B01G013800 chr7D 427383282 427384130 848 False 1014.000000 1014 88.01800 1283 2174 1 chr7D.!!$F3 891
9 TraesCS4B01G013800 chr7D 117425308 117426160 852 False 1007.000000 1007 87.79400 1283 2174 1 chr7D.!!$F1 891
10 TraesCS4B01G013800 chr6D 270896715 270897564 849 False 1033.000000 1033 88.35400 1283 2174 1 chr6D.!!$F2 891
11 TraesCS4B01G013800 chr3D 478940727 478941578 851 True 1018.000000 1018 88.00400 1283 2174 1 chr3D.!!$R2 891
12 TraesCS4B01G013800 chr3D 19075180 19075916 736 True 891.000000 891 88.25800 1299 2072 1 chr3D.!!$R1 773
13 TraesCS4B01G013800 chr1D 408674403 408675255 852 False 1018.000000 1018 88.01800 1283 2174 1 chr1D.!!$F1 891
14 TraesCS4B01G013800 chr6B 719554991 719555550 559 True 556.000000 556 84.65600 1 564 1 chr6B.!!$R1 563
15 TraesCS4B01G013800 chr6B 719573127 719579798 6671 True 556.000000 556 84.64925 1 564 4 chr6B.!!$R2 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 9310 0.101219 GGCGTGGCTGGATTTCAATC 59.899 55.000 0.00 0.00 34.66 2.67 F
610 9311 0.248215 GCGTGGCTGGATTTCAATCG 60.248 55.000 0.00 0.00 36.27 3.34 F
1241 12015 0.318699 GCAACGGAAAAAGTGAGGCC 60.319 55.000 0.00 0.00 0.00 5.19 F
1281 12064 0.679505 TAGCGACACTGCAGGTTTCT 59.320 50.000 19.93 14.54 37.31 2.52 F
2352 13198 1.207089 TGTTATGCCGAGCTTGCTAGT 59.793 47.619 10.12 0.77 0.00 2.57 F
3295 14177 1.498264 GAGGAGGTAAGGAAGGTCCC 58.502 60.000 0.00 0.00 37.19 4.46 F
3299 14181 1.555533 GAGGTAAGGAAGGTCCCACTG 59.444 57.143 0.00 0.00 37.19 3.66 F
4650 15548 0.191064 TGGGAGTTCTGGTCCTCACT 59.809 55.000 0.00 0.00 32.20 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 12901 2.225467 GGCTCCATTTGATACTCTGCC 58.775 52.381 0.00 0.00 0.00 4.85 R
2077 12908 2.705658 TCATCGGGCTCCATTTGATACT 59.294 45.455 0.00 0.00 0.00 2.12 R
2631 13478 0.850100 AATTGGGGGATATGCCACGA 59.150 50.000 15.93 12.17 42.92 4.35 R
2670 13517 3.646162 TCCACAGAACAAAGCTCTAAGGA 59.354 43.478 0.00 0.00 0.00 3.36 R
3814 14700 1.005037 TTCACCTACGCACTGCAGG 60.005 57.895 19.93 8.27 35.45 4.85 R
4650 15548 0.251033 ATGTGGCAGAAGCTGAAGCA 60.251 50.000 4.90 0.00 45.16 3.91 R
5008 15953 1.881973 TGAATCCTGCAGCAAAGACAC 59.118 47.619 8.66 0.00 0.00 3.67 R
6151 17114 0.036765 GGCACCAAGTACACGATCCA 60.037 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.891191 GGTTGTGGAACCCCAAGATA 57.109 50.000 0.00 0.00 45.48 1.98
60 1589 1.798223 CGTCAAGACTCGCAATTTGGA 59.202 47.619 0.00 0.00 0.00 3.53
101 3743 7.311092 TCTTGGACTATTACTCAGTTTTGGA 57.689 36.000 0.00 0.00 0.00 3.53
119 3761 1.555533 GGAGTCCCGAAGTGATTTCCT 59.444 52.381 0.00 0.00 31.82 3.36
154 4740 1.661197 GGGTGCGTTTACGTGTCGA 60.661 57.895 0.00 0.00 42.22 4.20
178 6292 4.341806 TCATCAACACTCACAATTTTGGCT 59.658 37.500 0.00 0.00 0.00 4.75
187 6301 2.997986 CACAATTTTGGCTGATTCTGGC 59.002 45.455 9.75 9.75 0.00 4.85
188 6302 2.633967 ACAATTTTGGCTGATTCTGGCA 59.366 40.909 14.51 14.51 36.26 4.92
197 6311 2.677836 GCTGATTCTGGCACGTTTCATA 59.322 45.455 0.00 0.00 0.00 2.15
198 6312 3.313526 GCTGATTCTGGCACGTTTCATAT 59.686 43.478 0.00 0.00 0.00 1.78
226 6340 0.186386 TCAACGTTTTGGGGTCCCAT 59.814 50.000 10.98 0.00 46.64 4.00
250 7422 3.116300 CGATTTCCACGATTGACGATCT 58.884 45.455 1.19 0.00 45.77 2.75
293 7465 3.181524 CGTCGTCAACACTCACAGTTTTT 60.182 43.478 0.00 0.00 0.00 1.94
295 7467 3.749088 TCGTCAACACTCACAGTTTTTGT 59.251 39.130 0.00 0.00 41.94 2.83
319 7491 1.666872 CTGACCCGTTTCGTGGACC 60.667 63.158 4.33 0.00 0.00 4.46
329 9029 3.395639 GTTTCGTGGACCATTACTCACA 58.604 45.455 0.00 0.00 0.00 3.58
331 9031 3.034721 TCGTGGACCATTACTCACAAC 57.965 47.619 0.00 0.00 0.00 3.32
339 9039 3.117284 ACCATTACTCACAACTTTGGGGT 60.117 43.478 0.00 0.00 30.87 4.95
340 9040 3.895041 CCATTACTCACAACTTTGGGGTT 59.105 43.478 0.00 0.00 30.87 4.11
341 9041 4.343814 CCATTACTCACAACTTTGGGGTTT 59.656 41.667 0.00 0.00 30.87 3.27
376 9076 5.308497 TCCATAGTTGTTGAACTCCAAGGTA 59.692 40.000 0.00 0.00 41.75 3.08
380 9080 1.154197 GTTGAACTCCAAGGTACGCC 58.846 55.000 0.00 0.00 35.03 5.68
383 9083 2.250031 TGAACTCCAAGGTACGCCTAA 58.750 47.619 0.00 0.00 46.33 2.69
384 9084 2.028748 TGAACTCCAAGGTACGCCTAAC 60.029 50.000 0.00 0.00 46.33 2.34
397 9097 0.811616 GCCTAACTGTCGGCCATCAG 60.812 60.000 18.76 18.76 40.43 2.90
398 9098 0.179073 CCTAACTGTCGGCCATCAGG 60.179 60.000 22.54 7.42 36.17 3.86
413 9113 2.270352 TCAGGAATCGCAGTTTTGGT 57.730 45.000 0.00 0.00 0.00 3.67
419 9119 3.915437 AATCGCAGTTTTGGTCGATTT 57.085 38.095 3.29 0.00 45.70 2.17
422 9122 2.356382 TCGCAGTTTTGGTCGATTTTGT 59.644 40.909 0.00 0.00 0.00 2.83
432 9132 3.243134 TGGTCGATTTTGTCCCGTTTTTC 60.243 43.478 0.00 0.00 0.00 2.29
433 9133 3.243134 GGTCGATTTTGTCCCGTTTTTCA 60.243 43.478 0.00 0.00 0.00 2.69
434 9134 4.352887 GTCGATTTTGTCCCGTTTTTCAA 58.647 39.130 0.00 0.00 0.00 2.69
450 9150 7.797123 CCGTTTTTCAAACTATTACTCACTGTC 59.203 37.037 0.00 0.00 0.00 3.51
452 9152 9.651718 GTTTTTCAAACTATTACTCACTGTCTG 57.348 33.333 0.00 0.00 0.00 3.51
453 9153 7.962964 TTTCAAACTATTACTCACTGTCTGG 57.037 36.000 0.00 0.00 0.00 3.86
462 9162 1.694150 CTCACTGTCTGGGAGTTTCCA 59.306 52.381 0.89 0.00 41.20 3.53
491 9191 0.107897 CCACGATTGATGAACCCCGA 60.108 55.000 0.00 0.00 0.00 5.14
492 9192 1.677518 CCACGATTGATGAACCCCGAA 60.678 52.381 0.00 0.00 0.00 4.30
500 9200 0.322322 ATGAACCCCGAAGTGCGTTA 59.678 50.000 0.00 0.00 38.67 3.18
502 9202 1.270947 TGAACCCCGAAGTGCGTTAAT 60.271 47.619 0.00 0.00 38.67 1.40
511 9211 1.873698 AGTGCGTTAATGTGTCGGTT 58.126 45.000 0.00 0.00 0.00 4.44
515 9215 2.931325 TGCGTTAATGTGTCGGTTATCC 59.069 45.455 0.00 0.00 0.00 2.59
517 9217 3.371591 GCGTTAATGTGTCGGTTATCCAA 59.628 43.478 0.00 0.00 0.00 3.53
530 9231 3.436359 GGTTATCCAAACTCGCGGTTTTA 59.564 43.478 18.84 12.56 44.77 1.52
537 9238 4.399978 CAAACTCGCGGTTTTATCGATTT 58.600 39.130 18.84 0.00 44.77 2.17
542 9243 3.680937 TCGCGGTTTTATCGATTTTGACT 59.319 39.130 6.13 0.00 0.00 3.41
548 9249 6.575942 CGGTTTTATCGATTTTGACTCGTTTT 59.424 34.615 1.71 0.00 37.40 2.43
549 9250 7.407871 CGGTTTTATCGATTTTGACTCGTTTTG 60.408 37.037 1.71 0.00 37.40 2.44
557 9258 6.510478 CGATTTTGACTCGTTTTGTGGACTAA 60.510 38.462 0.00 0.00 0.00 2.24
559 9260 5.666969 TTGACTCGTTTTGTGGACTAATG 57.333 39.130 0.00 0.00 0.00 1.90
560 9261 4.699637 TGACTCGTTTTGTGGACTAATGT 58.300 39.130 0.00 0.00 0.00 2.71
561 9262 5.845103 TGACTCGTTTTGTGGACTAATGTA 58.155 37.500 0.00 0.00 0.00 2.29
562 9263 5.693104 TGACTCGTTTTGTGGACTAATGTAC 59.307 40.000 0.00 0.00 0.00 2.90
563 9264 5.850614 ACTCGTTTTGTGGACTAATGTACT 58.149 37.500 0.00 0.00 0.00 2.73
564 9265 6.985117 ACTCGTTTTGTGGACTAATGTACTA 58.015 36.000 0.00 0.00 0.00 1.82
565 9266 7.609056 ACTCGTTTTGTGGACTAATGTACTAT 58.391 34.615 0.00 0.00 0.00 2.12
566 9267 8.092687 ACTCGTTTTGTGGACTAATGTACTATT 58.907 33.333 0.00 0.00 0.00 1.73
567 9268 9.577110 CTCGTTTTGTGGACTAATGTACTATTA 57.423 33.333 0.00 0.00 0.00 0.98
593 9294 4.654091 ATCTTGTAATTGAATTGGGGCG 57.346 40.909 0.00 0.00 0.00 6.13
594 9295 3.426615 TCTTGTAATTGAATTGGGGCGT 58.573 40.909 0.00 0.00 0.00 5.68
595 9296 3.192422 TCTTGTAATTGAATTGGGGCGTG 59.808 43.478 0.00 0.00 0.00 5.34
596 9297 1.821753 TGTAATTGAATTGGGGCGTGG 59.178 47.619 0.00 0.00 0.00 4.94
597 9298 0.820871 TAATTGAATTGGGGCGTGGC 59.179 50.000 0.00 0.00 0.00 5.01
598 9299 0.904394 AATTGAATTGGGGCGTGGCT 60.904 50.000 0.00 0.00 0.00 4.75
599 9300 1.606885 ATTGAATTGGGGCGTGGCTG 61.607 55.000 0.00 0.00 0.00 4.85
600 9301 3.451894 GAATTGGGGCGTGGCTGG 61.452 66.667 0.00 0.00 0.00 4.85
601 9302 3.936772 GAATTGGGGCGTGGCTGGA 62.937 63.158 0.00 0.00 0.00 3.86
602 9303 3.301222 AATTGGGGCGTGGCTGGAT 62.301 57.895 0.00 0.00 0.00 3.41
603 9304 2.803593 AATTGGGGCGTGGCTGGATT 62.804 55.000 0.00 0.00 0.00 3.01
604 9305 2.803593 ATTGGGGCGTGGCTGGATTT 62.804 55.000 0.00 0.00 0.00 2.17
605 9306 3.140814 GGGGCGTGGCTGGATTTC 61.141 66.667 0.00 0.00 0.00 2.17
606 9307 2.361104 GGGCGTGGCTGGATTTCA 60.361 61.111 0.00 0.00 0.00 2.69
607 9308 1.976474 GGGCGTGGCTGGATTTCAA 60.976 57.895 0.00 0.00 0.00 2.69
608 9309 1.322538 GGGCGTGGCTGGATTTCAAT 61.323 55.000 0.00 0.00 0.00 2.57
609 9310 0.101219 GGCGTGGCTGGATTTCAATC 59.899 55.000 0.00 0.00 34.66 2.67
610 9311 0.248215 GCGTGGCTGGATTTCAATCG 60.248 55.000 0.00 0.00 36.27 3.34
611 9312 1.368641 CGTGGCTGGATTTCAATCGA 58.631 50.000 0.00 0.00 36.27 3.59
612 9313 1.942657 CGTGGCTGGATTTCAATCGAT 59.057 47.619 0.00 0.00 36.27 3.59
613 9314 2.032549 CGTGGCTGGATTTCAATCGATC 60.033 50.000 0.00 0.00 36.27 3.69
614 9315 2.032549 GTGGCTGGATTTCAATCGATCG 60.033 50.000 9.36 9.36 36.27 3.69
615 9316 2.158971 TGGCTGGATTTCAATCGATCGA 60.159 45.455 21.86 21.86 36.27 3.59
616 9317 2.478134 GGCTGGATTTCAATCGATCGAG 59.522 50.000 23.84 10.96 36.27 4.04
617 9318 3.384668 GCTGGATTTCAATCGATCGAGA 58.615 45.455 23.84 13.27 36.27 4.04
618 9319 3.183373 GCTGGATTTCAATCGATCGAGAC 59.817 47.826 23.84 8.73 36.27 3.36
619 9320 4.615949 CTGGATTTCAATCGATCGAGACT 58.384 43.478 23.84 7.62 36.27 3.24
620 9321 5.011090 TGGATTTCAATCGATCGAGACTT 57.989 39.130 23.84 10.28 36.27 3.01
621 9322 6.144078 TGGATTTCAATCGATCGAGACTTA 57.856 37.500 23.84 9.02 36.27 2.24
622 9323 6.569780 TGGATTTCAATCGATCGAGACTTAA 58.430 36.000 23.84 13.22 36.27 1.85
623 9324 6.475727 TGGATTTCAATCGATCGAGACTTAAC 59.524 38.462 23.84 11.96 36.27 2.01
624 9325 6.074249 GGATTTCAATCGATCGAGACTTAACC 60.074 42.308 23.84 16.58 36.27 2.85
625 9326 4.976224 TCAATCGATCGAGACTTAACCA 57.024 40.909 23.84 0.00 0.00 3.67
626 9327 5.319140 TCAATCGATCGAGACTTAACCAA 57.681 39.130 23.84 0.00 0.00 3.67
627 9328 5.902681 TCAATCGATCGAGACTTAACCAAT 58.097 37.500 23.84 0.00 0.00 3.16
628 9329 6.338146 TCAATCGATCGAGACTTAACCAATT 58.662 36.000 23.84 5.19 0.00 2.32
629 9330 6.475727 TCAATCGATCGAGACTTAACCAATTC 59.524 38.462 23.84 0.00 0.00 2.17
630 9331 5.578005 TCGATCGAGACTTAACCAATTCT 57.422 39.130 15.15 0.00 0.00 2.40
631 9332 5.579718 TCGATCGAGACTTAACCAATTCTC 58.420 41.667 15.15 0.00 37.20 2.87
632 9333 5.124936 TCGATCGAGACTTAACCAATTCTCA 59.875 40.000 15.15 0.00 39.33 3.27
633 9334 5.457148 CGATCGAGACTTAACCAATTCTCAG 59.543 44.000 10.26 0.63 39.33 3.35
634 9335 5.723672 TCGAGACTTAACCAATTCTCAGT 57.276 39.130 5.83 0.00 39.33 3.41
635 9336 5.710984 TCGAGACTTAACCAATTCTCAGTC 58.289 41.667 5.83 0.00 39.33 3.51
636 9337 5.243060 TCGAGACTTAACCAATTCTCAGTCA 59.757 40.000 0.00 0.00 39.33 3.41
637 9338 5.926542 CGAGACTTAACCAATTCTCAGTCAA 59.073 40.000 0.00 0.00 39.33 3.18
638 9339 6.128795 CGAGACTTAACCAATTCTCAGTCAAC 60.129 42.308 0.00 0.00 39.33 3.18
639 9340 6.591935 AGACTTAACCAATTCTCAGTCAACA 58.408 36.000 0.00 0.00 34.33 3.33
640 9341 7.054124 AGACTTAACCAATTCTCAGTCAACAA 58.946 34.615 0.00 0.00 34.33 2.83
641 9342 7.012421 AGACTTAACCAATTCTCAGTCAACAAC 59.988 37.037 0.00 0.00 34.33 3.32
642 9343 6.601613 ACTTAACCAATTCTCAGTCAACAACA 59.398 34.615 0.00 0.00 0.00 3.33
643 9344 5.913137 AACCAATTCTCAGTCAACAACAA 57.087 34.783 0.00 0.00 0.00 2.83
644 9345 5.248870 ACCAATTCTCAGTCAACAACAAC 57.751 39.130 0.00 0.00 0.00 3.32
645 9346 4.704540 ACCAATTCTCAGTCAACAACAACA 59.295 37.500 0.00 0.00 0.00 3.33
646 9347 5.360714 ACCAATTCTCAGTCAACAACAACAT 59.639 36.000 0.00 0.00 0.00 2.71
647 9348 6.545666 ACCAATTCTCAGTCAACAACAACATA 59.454 34.615 0.00 0.00 0.00 2.29
648 9349 6.857964 CCAATTCTCAGTCAACAACAACATAC 59.142 38.462 0.00 0.00 0.00 2.39
649 9350 5.651172 TTCTCAGTCAACAACAACATACG 57.349 39.130 0.00 0.00 0.00 3.06
650 9351 4.939271 TCTCAGTCAACAACAACATACGA 58.061 39.130 0.00 0.00 0.00 3.43
651 9352 5.353111 TCTCAGTCAACAACAACATACGAA 58.647 37.500 0.00 0.00 0.00 3.85
652 9353 5.813157 TCTCAGTCAACAACAACATACGAAA 59.187 36.000 0.00 0.00 0.00 3.46
653 9354 6.314152 TCTCAGTCAACAACAACATACGAAAA 59.686 34.615 0.00 0.00 0.00 2.29
654 9355 6.843208 TCAGTCAACAACAACATACGAAAAA 58.157 32.000 0.00 0.00 0.00 1.94
655 9356 6.964370 TCAGTCAACAACAACATACGAAAAAG 59.036 34.615 0.00 0.00 0.00 2.27
656 9357 6.964370 CAGTCAACAACAACATACGAAAAAGA 59.036 34.615 0.00 0.00 0.00 2.52
657 9358 7.483375 CAGTCAACAACAACATACGAAAAAGAA 59.517 33.333 0.00 0.00 0.00 2.52
658 9359 8.024285 AGTCAACAACAACATACGAAAAAGAAA 58.976 29.630 0.00 0.00 0.00 2.52
659 9360 8.640291 GTCAACAACAACATACGAAAAAGAAAA 58.360 29.630 0.00 0.00 0.00 2.29
660 9361 8.855279 TCAACAACAACATACGAAAAAGAAAAG 58.145 29.630 0.00 0.00 0.00 2.27
661 9362 8.855279 CAACAACAACATACGAAAAAGAAAAGA 58.145 29.630 0.00 0.00 0.00 2.52
662 9363 8.973835 ACAACAACATACGAAAAAGAAAAGAA 57.026 26.923 0.00 0.00 0.00 2.52
663 9364 9.413048 ACAACAACATACGAAAAAGAAAAGAAA 57.587 25.926 0.00 0.00 0.00 2.52
695 9396 9.428097 AGAAAACAAAATTTTGCATAGATCTCC 57.572 29.630 26.94 8.50 41.79 3.71
696 9397 9.206870 GAAAACAAAATTTTGCATAGATCTCCA 57.793 29.630 26.94 0.00 41.79 3.86
697 9398 8.538409 AAACAAAATTTTGCATAGATCTCCAC 57.462 30.769 26.94 0.00 41.79 4.02
698 9399 6.324819 ACAAAATTTTGCATAGATCTCCACG 58.675 36.000 26.94 2.11 41.79 4.94
699 9400 6.071952 ACAAAATTTTGCATAGATCTCCACGT 60.072 34.615 26.94 2.76 41.79 4.49
700 9401 7.120579 ACAAAATTTTGCATAGATCTCCACGTA 59.879 33.333 26.94 0.00 41.79 3.57
701 9402 7.624360 AAATTTTGCATAGATCTCCACGTAA 57.376 32.000 0.00 0.00 0.00 3.18
703 9404 5.592104 TTTGCATAGATCTCCACGTAAGA 57.408 39.130 0.00 2.62 43.62 2.10
704 9405 5.791336 TTGCATAGATCTCCACGTAAGAT 57.209 39.130 11.33 11.33 43.62 2.40
705 9406 5.126396 TGCATAGATCTCCACGTAAGATG 57.874 43.478 15.25 5.93 43.62 2.90
706 9407 4.584743 TGCATAGATCTCCACGTAAGATGT 59.415 41.667 15.25 13.79 43.62 3.06
707 9408 5.157781 GCATAGATCTCCACGTAAGATGTC 58.842 45.833 15.25 5.35 43.62 3.06
708 9409 5.278512 GCATAGATCTCCACGTAAGATGTCA 60.279 44.000 15.25 3.46 43.62 3.58
709 9410 4.640789 AGATCTCCACGTAAGATGTCAC 57.359 45.455 15.25 3.77 43.62 3.67
710 9411 2.913777 TCTCCACGTAAGATGTCACG 57.086 50.000 0.00 0.00 43.63 4.35
711 9412 1.471287 TCTCCACGTAAGATGTCACGG 59.529 52.381 0.00 0.00 42.35 4.94
712 9413 1.471287 CTCCACGTAAGATGTCACGGA 59.529 52.381 0.00 0.00 42.35 4.69
713 9414 2.097036 TCCACGTAAGATGTCACGGAT 58.903 47.619 0.00 0.00 42.35 4.18
714 9415 3.281158 TCCACGTAAGATGTCACGGATA 58.719 45.455 0.00 0.00 42.35 2.59
715 9416 3.065786 TCCACGTAAGATGTCACGGATAC 59.934 47.826 0.00 0.00 42.35 2.24
728 9429 2.797515 GGATACGGAATCGAGTGCG 58.202 57.895 24.80 24.80 40.11 5.34
737 9438 4.979204 TCGAGTGCGACCGAAATT 57.021 50.000 0.00 0.00 42.51 1.82
738 9439 3.204505 TCGAGTGCGACCGAAATTT 57.795 47.368 0.00 0.00 42.51 1.82
739 9440 2.350899 TCGAGTGCGACCGAAATTTA 57.649 45.000 0.00 0.00 42.51 1.40
764 9465 6.549364 AGCAATCCCGAATTGTATTCCATAAA 59.451 34.615 10.79 0.00 45.55 1.40
848 9562 3.060205 GTCAGAGAGAGAAAACAACACGC 60.060 47.826 0.00 0.00 0.00 5.34
937 11689 2.036571 CGTAAACCGCCAGAACCCC 61.037 63.158 0.00 0.00 0.00 4.95
982 11734 2.817423 GATTGCTTGGCTCTCGGCG 61.817 63.158 0.00 0.00 42.94 6.46
1199 11970 0.512952 CTGTTCTTTTCTGTCCGCCG 59.487 55.000 0.00 0.00 0.00 6.46
1202 11973 1.070108 GTTCTTTTCTGTCCGCCGTTC 60.070 52.381 0.00 0.00 0.00 3.95
1204 11975 1.202604 TCTTTTCTGTCCGCCGTTCTT 60.203 47.619 0.00 0.00 0.00 2.52
1205 11976 1.602377 CTTTTCTGTCCGCCGTTCTTT 59.398 47.619 0.00 0.00 0.00 2.52
1206 11977 1.670791 TTTCTGTCCGCCGTTCTTTT 58.329 45.000 0.00 0.00 0.00 2.27
1207 11978 1.223187 TTCTGTCCGCCGTTCTTTTC 58.777 50.000 0.00 0.00 0.00 2.29
1208 11979 0.601841 TCTGTCCGCCGTTCTTTTCC 60.602 55.000 0.00 0.00 0.00 3.13
1211 11982 1.957186 TCCGCCGTTCTTTTCCGTG 60.957 57.895 0.00 0.00 0.00 4.94
1226 12000 5.554822 TTTCCGTGGTATATTTCTGCAAC 57.445 39.130 0.00 0.00 0.00 4.17
1233 12007 6.383415 GTGGTATATTTCTGCAACGGAAAAA 58.617 36.000 5.74 0.00 41.26 1.94
1234 12008 6.526674 GTGGTATATTTCTGCAACGGAAAAAG 59.473 38.462 5.74 0.00 41.26 2.27
1235 12009 6.207810 TGGTATATTTCTGCAACGGAAAAAGT 59.792 34.615 5.74 0.00 41.26 2.66
1236 12010 6.526674 GGTATATTTCTGCAACGGAAAAAGTG 59.473 38.462 5.74 0.00 41.26 3.16
1237 12011 4.647424 ATTTCTGCAACGGAAAAAGTGA 57.353 36.364 5.74 0.00 41.26 3.41
1239 12013 1.946768 TCTGCAACGGAAAAAGTGAGG 59.053 47.619 0.00 0.00 0.00 3.86
1241 12015 0.318699 GCAACGGAAAAAGTGAGGCC 60.319 55.000 0.00 0.00 0.00 5.19
1263 12046 3.399952 TTTTTGGGTTTGGGGACTGTA 57.600 42.857 0.00 0.00 0.00 2.74
1281 12064 0.679505 TAGCGACACTGCAGGTTTCT 59.320 50.000 19.93 14.54 37.31 2.52
1306 12089 5.221843 TGGTGGAAACTGCTCTGTTTAGTAT 60.222 40.000 5.13 0.00 39.86 2.12
1316 12099 4.448060 GCTCTGTTTAGTATATTCACGGGC 59.552 45.833 0.00 0.00 0.00 6.13
1352 12135 3.306989 CCATGGAGCCGCTAGATTGATTA 60.307 47.826 5.56 0.00 0.00 1.75
1361 12144 5.239525 GCCGCTAGATTGATTAATTTGGAGT 59.760 40.000 0.00 0.00 0.00 3.85
1429 12236 7.173390 ACAATTGTTTACTTAGAGCAGACCTTC 59.827 37.037 4.92 0.00 0.00 3.46
1431 12238 6.420913 TGTTTACTTAGAGCAGACCTTCTT 57.579 37.500 0.00 0.00 0.00 2.52
1432 12239 6.827727 TGTTTACTTAGAGCAGACCTTCTTT 58.172 36.000 0.00 0.00 0.00 2.52
1433 12240 7.280356 TGTTTACTTAGAGCAGACCTTCTTTT 58.720 34.615 0.00 0.00 0.00 2.27
1434 12241 7.773690 TGTTTACTTAGAGCAGACCTTCTTTTT 59.226 33.333 0.00 0.00 0.00 1.94
1487 12294 4.911390 ACATGAGAGTTTAAGTGGGGAAG 58.089 43.478 0.00 0.00 0.00 3.46
1491 12298 4.903049 TGAGAGTTTAAGTGGGGAAGTGTA 59.097 41.667 0.00 0.00 0.00 2.90
1492 12299 5.011738 TGAGAGTTTAAGTGGGGAAGTGTAG 59.988 44.000 0.00 0.00 0.00 2.74
1496 12303 5.308759 AGTTTAAGTGGGGAAGTGTAGCTTA 59.691 40.000 0.00 0.00 37.59 3.09
1587 12402 9.111702 TGCGTAAACAAATACCGTAAATAAAAC 57.888 29.630 0.00 0.00 0.00 2.43
1699 12523 2.105960 GACTTGCTCGTGTGTGGCAC 62.106 60.000 11.55 11.55 44.36 5.01
1892 12720 3.261580 TCATAGTTCCACTCATGTTGCG 58.738 45.455 0.00 0.00 0.00 4.85
2033 12862 5.813080 ACAGAACGGTAAATAGGCAAATC 57.187 39.130 0.00 0.00 0.00 2.17
2036 12865 6.093633 ACAGAACGGTAAATAGGCAAATCTTC 59.906 38.462 0.00 0.00 0.00 2.87
2079 12910 6.533730 TGATAAATTCATAATCCGGCAGAGT 58.466 36.000 0.00 0.00 0.00 3.24
2080 12911 7.676004 TGATAAATTCATAATCCGGCAGAGTA 58.324 34.615 0.00 0.00 0.00 2.59
2098 12929 2.705658 AGTATCAAATGGAGCCCGATGA 59.294 45.455 0.00 0.00 0.00 2.92
2295 13141 2.633967 TCCAGCATTGGCAGTTTCATTT 59.366 40.909 0.00 0.00 44.63 2.32
2352 13198 1.207089 TGTTATGCCGAGCTTGCTAGT 59.793 47.619 10.12 0.77 0.00 2.57
2422 13268 4.400120 TGGCGAAGGGTAAAAATTACTGT 58.600 39.130 0.00 0.00 0.00 3.55
2428 13274 4.669700 AGGGTAAAAATTACTGTCCCCAC 58.330 43.478 0.00 0.00 34.52 4.61
2631 13478 2.437359 GGCGGATCTGCTGTTGCT 60.437 61.111 25.27 0.00 40.48 3.91
2668 13515 5.814705 CCCAATTTAGTGAGTGTCATCTCTC 59.185 44.000 0.00 0.00 35.68 3.20
2670 13517 7.102346 CCAATTTAGTGAGTGTCATCTCTCTT 58.898 38.462 10.30 0.00 38.60 2.85
2671 13518 7.277539 CCAATTTAGTGAGTGTCATCTCTCTTC 59.722 40.741 10.30 0.00 38.60 2.87
2726 13573 2.531206 CTTGAACTACCGCTCTGCTAC 58.469 52.381 0.00 0.00 0.00 3.58
2929 13776 5.741011 TGGTACTTTGCTCAGGTTATAAGG 58.259 41.667 0.00 0.00 0.00 2.69
3048 13895 4.863152 TGTGTGATGCTATTTGTGATCG 57.137 40.909 0.00 0.00 0.00 3.69
3295 14177 1.498264 GAGGAGGTAAGGAAGGTCCC 58.502 60.000 0.00 0.00 37.19 4.46
3299 14181 1.555533 GAGGTAAGGAAGGTCCCACTG 59.444 57.143 0.00 0.00 37.19 3.66
3311 14196 2.554032 GGTCCCACTGAATGACTTTGTG 59.446 50.000 0.00 0.00 0.00 3.33
3730 14615 2.664568 CCACAGGTATACAAACACGTCG 59.335 50.000 5.01 0.00 0.00 5.12
3772 14658 6.321945 TGATAATTAGCAGTCTACCCGTAACA 59.678 38.462 0.00 0.00 0.00 2.41
3814 14700 3.244249 CCATACTAGGGGCAGCTACTTTC 60.244 52.174 0.00 0.00 0.00 2.62
3848 14734 4.931914 AGGTGAACCTAGTCTTGTAGCTA 58.068 43.478 0.00 0.00 46.48 3.32
3962 14848 2.305343 ACTGCTGCCATCTTTCTTCTCT 59.695 45.455 0.00 0.00 0.00 3.10
4037 14923 3.132801 GCTGCTGCTCTGGCCTTC 61.133 66.667 3.32 0.00 37.74 3.46
4089 14975 4.339814 TGGTAAGAAAACATCAAGCCGTTT 59.660 37.500 0.00 0.00 36.92 3.60
4107 14993 5.164061 GCCGTTTTCATTTGCATACTTTGAG 60.164 40.000 0.00 0.00 0.00 3.02
4108 14994 6.148948 CCGTTTTCATTTGCATACTTTGAGA 58.851 36.000 0.00 0.00 0.00 3.27
4116 15002 8.741841 TCATTTGCATACTTTGAGATTTCATGA 58.258 29.630 0.00 0.00 32.27 3.07
4235 15127 1.754803 CTCCTGGCGTTCACCATAGTA 59.245 52.381 0.00 0.00 39.54 1.82
4303 15198 2.174360 CCCTCTATCATCATCTCGGCA 58.826 52.381 0.00 0.00 0.00 5.69
4456 15351 4.243007 AGAAGCAACACAAAGGTAATGC 57.757 40.909 0.00 0.00 37.79 3.56
4458 15353 1.953686 AGCAACACAAAGGTAATGCGT 59.046 42.857 0.00 0.00 40.65 5.24
4463 15358 3.735591 ACACAAAGGTAATGCGTACACT 58.264 40.909 0.00 0.00 34.01 3.55
4474 15369 2.217750 TGCGTACACTGTTGCTTTCAT 58.782 42.857 7.40 0.00 0.00 2.57
4478 15373 5.022021 GCGTACACTGTTGCTTTCATATTC 58.978 41.667 0.00 0.00 0.00 1.75
4547 15445 3.067320 GGAAGCTAACCAAGATGAATGGC 59.933 47.826 5.17 0.00 41.89 4.40
4556 15454 3.516700 CCAAGATGAATGGCCTTTCCTTT 59.483 43.478 24.37 14.65 35.16 3.11
4599 15497 2.930040 GGATGAGATGAAGCGTCGAAAA 59.070 45.455 0.00 0.00 0.00 2.29
4632 15530 2.222007 GCATAGGCTCTGTCTGTCTG 57.778 55.000 0.00 0.00 36.96 3.51
4650 15548 0.191064 TGGGAGTTCTGGTCCTCACT 59.809 55.000 0.00 0.00 32.20 3.41
4713 15613 9.100197 TGCATATAGTTGGGAAAGAGATACATA 57.900 33.333 0.00 0.00 0.00 2.29
4758 15661 4.618378 AATGGAAGCTTTATTACCCCCA 57.382 40.909 0.00 0.37 0.00 4.96
4763 15666 2.784178 AGCTTTATTACCCCCAGCCTA 58.216 47.619 0.00 0.00 0.00 3.93
4912 15852 3.284617 CATTGACCAAGATGATGGCAGA 58.715 45.455 0.00 0.00 44.75 4.26
4925 15865 3.072330 TGATGGCAGACACTCTTTTGGTA 59.928 43.478 0.00 0.00 0.00 3.25
4946 15886 7.691213 TGGTAATTCTGGAGGTACATTAAACA 58.309 34.615 0.00 0.00 0.00 2.83
5008 15953 4.022935 TGCATGTTTCTTTAGGCTGAACTG 60.023 41.667 0.00 0.00 0.00 3.16
5045 15991 0.187117 TCATGTGCCCCTTTGTTCCA 59.813 50.000 0.00 0.00 0.00 3.53
5114 16060 2.092753 CCTTGGGTGAGTGCACATCTAT 60.093 50.000 21.04 0.00 46.96 1.98
5172 16118 9.512435 GTGATTTATCCAGAAAGAACAATCATG 57.488 33.333 0.00 0.00 33.88 3.07
5241 16187 2.803451 CTGCTGATAGGTGTTCTCGTC 58.197 52.381 0.00 0.00 0.00 4.20
5340 16286 3.372206 GGAGTTCATCTGGTTTCATGTCG 59.628 47.826 0.00 0.00 0.00 4.35
5367 16313 6.990349 AGAAAAGAAAGAACCGTCACATCTTA 59.010 34.615 0.00 0.00 33.26 2.10
5383 16329 5.471456 CACATCTTAGAGCTGACAAAACCTT 59.529 40.000 0.00 0.00 0.00 3.50
5384 16330 6.650807 CACATCTTAGAGCTGACAAAACCTTA 59.349 38.462 0.00 0.00 0.00 2.69
5395 16341 0.037734 AAAACCTTACCGGCCCTCAG 59.962 55.000 0.00 0.00 35.61 3.35
5406 16352 2.817424 CCCTCAGCTGCGCATAGA 59.183 61.111 12.24 8.55 0.00 1.98
5407 16353 1.370437 CCCTCAGCTGCGCATAGAT 59.630 57.895 12.24 0.00 0.00 1.98
5408 16354 0.949588 CCCTCAGCTGCGCATAGATG 60.950 60.000 12.24 9.96 35.49 2.90
5464 16411 5.129634 TGTTGAATTGTTGGAGCTTAGTCA 58.870 37.500 0.00 0.00 0.00 3.41
5519 16467 2.277969 CGTGCATGAGAAAGATCAGCT 58.722 47.619 0.00 0.00 31.44 4.24
5544 16492 5.091552 ACAGACTAGAGTTTGGATTGGGTA 58.908 41.667 0.00 0.00 34.79 3.69
5547 16495 5.422650 AGACTAGAGTTTGGATTGGGTAGTC 59.577 44.000 0.00 0.00 36.80 2.59
5610 16558 1.076727 AAGCAAGCCCCTTGTACCC 59.923 57.895 6.80 0.00 42.77 3.69
5705 16653 8.946085 CAGAGCTTCAATACAGTTATTTTACCA 58.054 33.333 0.00 0.00 0.00 3.25
5788 16738 2.104331 CGATGAAGTCGGACGGGG 59.896 66.667 1.89 0.00 46.47 5.73
5871 16821 6.988522 ACAGAACTTGTTGTGGTTTTAGTTT 58.011 32.000 13.77 0.00 36.31 2.66
5872 16822 6.866248 ACAGAACTTGTTGTGGTTTTAGTTTG 59.134 34.615 13.77 0.00 36.31 2.93
5874 16824 7.596995 CAGAACTTGTTGTGGTTTTAGTTTGAA 59.403 33.333 3.13 0.00 0.00 2.69
5875 16825 8.311109 AGAACTTGTTGTGGTTTTAGTTTGAAT 58.689 29.630 0.00 0.00 0.00 2.57
5876 16826 8.840833 AACTTGTTGTGGTTTTAGTTTGAATT 57.159 26.923 0.00 0.00 0.00 2.17
5877 16827 8.840833 ACTTGTTGTGGTTTTAGTTTGAATTT 57.159 26.923 0.00 0.00 0.00 1.82
5879 16829 8.833231 TTGTTGTGGTTTTAGTTTGAATTTGA 57.167 26.923 0.00 0.00 0.00 2.69
5880 16830 8.833231 TGTTGTGGTTTTAGTTTGAATTTGAA 57.167 26.923 0.00 0.00 0.00 2.69
5881 16831 8.713271 TGTTGTGGTTTTAGTTTGAATTTGAAC 58.287 29.630 0.00 0.00 0.00 3.18
5882 16832 8.931775 GTTGTGGTTTTAGTTTGAATTTGAACT 58.068 29.630 10.87 10.87 39.32 3.01
5913 16863 2.752903 CAAGTATTTTGGAACGGAGGGG 59.247 50.000 0.00 0.00 0.00 4.79
5966 16929 2.619074 CCTTGTTGAATGGAGGGAGGAC 60.619 54.545 0.00 0.00 0.00 3.85
5967 16930 0.613260 TGTTGAATGGAGGGAGGACG 59.387 55.000 0.00 0.00 0.00 4.79
5968 16931 0.902531 GTTGAATGGAGGGAGGACGA 59.097 55.000 0.00 0.00 0.00 4.20
6076 17039 3.384532 TGAACCCTCCGGCGTACC 61.385 66.667 6.01 0.00 0.00 3.34
6102 17065 1.837499 ATAGCCCCCTACCTCGTGC 60.837 63.158 0.00 0.00 0.00 5.34
6151 17114 1.228490 ACGGAGAGGTTGAGGTCGT 60.228 57.895 0.00 0.00 0.00 4.34
6186 17149 2.989253 CCGGTGAAGGGGCAAACC 60.989 66.667 0.00 0.00 39.11 3.27
6201 17164 0.688487 AAACCGAGTCGAAATCCCCA 59.312 50.000 15.64 0.00 0.00 4.96
6251 17214 1.675552 ACAAGAACCAAAGTGTCCCG 58.324 50.000 0.00 0.00 0.00 5.14
6266 17229 1.274728 GTCCCGAGCTCATATGCATCT 59.725 52.381 15.40 0.00 34.99 2.90
6270 17233 4.040339 TCCCGAGCTCATATGCATCTTAAA 59.960 41.667 15.40 0.00 34.99 1.52
6277 17240 8.097078 AGCTCATATGCATCTTAAATTGTCTC 57.903 34.615 0.19 0.00 34.99 3.36
6282 17245 8.789762 CATATGCATCTTAAATTGTCTCATGGA 58.210 33.333 0.19 0.00 0.00 3.41
6320 17302 2.746277 GCAGGCCGTGGTCGATTT 60.746 61.111 0.00 0.00 39.71 2.17
6331 17313 1.265635 TGGTCGATTTGCCGTTTCAAG 59.734 47.619 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.269883 TGACGACCAACACGTAAGCAT 60.270 47.619 0.00 0.00 43.97 3.79
60 1589 0.541863 AGAAACGGGCCAGAATCGAT 59.458 50.000 10.86 0.00 0.00 3.59
101 3743 1.204941 CGAGGAAATCACTTCGGGACT 59.795 52.381 0.00 0.00 36.12 3.85
131 4716 2.344500 CGTAAACGCACCCCAGGA 59.656 61.111 0.00 0.00 0.00 3.86
134 4719 1.594836 GACACGTAAACGCACCCCA 60.595 57.895 1.74 0.00 44.43 4.96
135 4720 2.660612 CGACACGTAAACGCACCCC 61.661 63.158 1.74 0.00 44.43 4.95
136 4721 1.010419 ATCGACACGTAAACGCACCC 61.010 55.000 1.74 0.00 44.43 4.61
154 4740 5.011329 AGCCAAAATTGTGAGTGTTGATGAT 59.989 36.000 0.00 0.00 0.00 2.45
178 6292 5.670485 AGTATATGAAACGTGCCAGAATCA 58.330 37.500 0.00 0.00 0.00 2.57
187 6301 9.229784 ACGTTGAGTAATAGTATATGAAACGTG 57.770 33.333 16.37 0.00 45.46 4.49
197 6311 6.714278 ACCCCAAAACGTTGAGTAATAGTAT 58.286 36.000 0.00 0.00 36.83 2.12
198 6312 6.112927 ACCCCAAAACGTTGAGTAATAGTA 57.887 37.500 0.00 0.00 36.83 1.82
226 6340 2.159352 TCGTCAATCGTGGAAATCGCTA 60.159 45.455 0.00 0.00 40.80 4.26
250 7422 3.614698 ACGTAAACGCACCCCGGA 61.615 61.111 0.73 0.00 44.43 5.14
295 7467 2.139917 CACGAAACGGGTCAGAATTGA 58.860 47.619 0.00 0.00 0.00 2.57
319 7491 5.528870 GAAACCCCAAAGTTGTGAGTAATG 58.471 41.667 0.00 0.00 0.00 1.90
329 9029 3.007473 TCACTTCGAAACCCCAAAGTT 57.993 42.857 0.00 0.00 29.78 2.66
331 9031 4.546570 GAAATCACTTCGAAACCCCAAAG 58.453 43.478 0.00 0.00 0.00 2.77
339 9039 7.227711 TCAACAACTATGGAAATCACTTCGAAA 59.772 33.333 0.00 0.00 34.56 3.46
340 9040 6.708502 TCAACAACTATGGAAATCACTTCGAA 59.291 34.615 0.00 0.00 34.56 3.71
341 9041 6.227522 TCAACAACTATGGAAATCACTTCGA 58.772 36.000 0.00 0.00 34.56 3.71
380 9080 0.824109 TCCTGATGGCCGACAGTTAG 59.176 55.000 21.76 11.01 32.93 2.34
383 9083 0.179000 GATTCCTGATGGCCGACAGT 59.821 55.000 21.76 8.64 32.93 3.55
384 9084 0.877649 CGATTCCTGATGGCCGACAG 60.878 60.000 18.31 18.31 0.00 3.51
397 9097 1.153353 TCGACCAAAACTGCGATTCC 58.847 50.000 0.00 0.00 0.00 3.01
398 9098 3.471495 AATCGACCAAAACTGCGATTC 57.529 42.857 0.00 0.00 46.71 2.52
413 9113 4.634184 TTGAAAAACGGGACAAAATCGA 57.366 36.364 0.00 0.00 0.00 3.59
419 9119 7.282675 TGAGTAATAGTTTGAAAAACGGGACAA 59.717 33.333 0.00 0.00 0.00 3.18
422 9122 6.993902 AGTGAGTAATAGTTTGAAAAACGGGA 59.006 34.615 0.00 0.00 0.00 5.14
432 9132 6.037786 TCCCAGACAGTGAGTAATAGTTTG 57.962 41.667 0.00 0.00 0.00 2.93
433 9133 5.780793 ACTCCCAGACAGTGAGTAATAGTTT 59.219 40.000 0.00 0.00 37.58 2.66
434 9134 5.334421 ACTCCCAGACAGTGAGTAATAGTT 58.666 41.667 0.00 0.00 37.58 2.24
452 9152 3.244911 TGGAAATCACTCTGGAAACTCCC 60.245 47.826 0.00 0.00 35.03 4.30
453 9153 3.753797 GTGGAAATCACTCTGGAAACTCC 59.246 47.826 0.00 0.00 42.86 3.85
457 9157 3.762407 TCGTGGAAATCACTCTGGAAA 57.238 42.857 0.00 0.00 43.94 3.13
459 9159 3.260632 TCAATCGTGGAAATCACTCTGGA 59.739 43.478 0.00 0.00 43.94 3.86
462 9162 5.089970 TCATCAATCGTGGAAATCACTCT 57.910 39.130 0.00 0.00 43.94 3.24
482 9182 0.106335 TTAACGCACTTCGGGGTTCA 59.894 50.000 0.00 0.00 42.15 3.18
491 9191 1.873698 ACCGACACATTAACGCACTT 58.126 45.000 0.00 0.00 0.00 3.16
492 9192 1.873698 AACCGACACATTAACGCACT 58.126 45.000 0.00 0.00 0.00 4.40
500 9200 3.682858 CGAGTTTGGATAACCGACACATT 59.317 43.478 0.00 0.00 39.42 2.71
502 9202 2.679450 CGAGTTTGGATAACCGACACA 58.321 47.619 0.00 0.00 39.42 3.72
517 9217 4.152759 TCAAAATCGATAAAACCGCGAGTT 59.847 37.500 8.23 7.51 42.93 3.01
530 9231 4.513692 TCCACAAAACGAGTCAAAATCGAT 59.486 37.500 3.66 0.00 42.76 3.59
537 9238 5.120399 ACATTAGTCCACAAAACGAGTCAA 58.880 37.500 0.00 0.00 0.00 3.18
567 9268 8.522830 CGCCCCAATTCAATTACAAGATTATAT 58.477 33.333 0.00 0.00 0.00 0.86
568 9269 7.504238 ACGCCCCAATTCAATTACAAGATTATA 59.496 33.333 0.00 0.00 0.00 0.98
569 9270 6.323739 ACGCCCCAATTCAATTACAAGATTAT 59.676 34.615 0.00 0.00 0.00 1.28
570 9271 5.654650 ACGCCCCAATTCAATTACAAGATTA 59.345 36.000 0.00 0.00 0.00 1.75
571 9272 4.466015 ACGCCCCAATTCAATTACAAGATT 59.534 37.500 0.00 0.00 0.00 2.40
572 9273 4.023291 ACGCCCCAATTCAATTACAAGAT 58.977 39.130 0.00 0.00 0.00 2.40
573 9274 3.192422 CACGCCCCAATTCAATTACAAGA 59.808 43.478 0.00 0.00 0.00 3.02
574 9275 3.510719 CACGCCCCAATTCAATTACAAG 58.489 45.455 0.00 0.00 0.00 3.16
575 9276 2.232452 CCACGCCCCAATTCAATTACAA 59.768 45.455 0.00 0.00 0.00 2.41
576 9277 1.821753 CCACGCCCCAATTCAATTACA 59.178 47.619 0.00 0.00 0.00 2.41
577 9278 1.470805 GCCACGCCCCAATTCAATTAC 60.471 52.381 0.00 0.00 0.00 1.89
578 9279 0.820871 GCCACGCCCCAATTCAATTA 59.179 50.000 0.00 0.00 0.00 1.40
579 9280 0.904394 AGCCACGCCCCAATTCAATT 60.904 50.000 0.00 0.00 0.00 2.32
580 9281 1.305213 AGCCACGCCCCAATTCAAT 60.305 52.632 0.00 0.00 0.00 2.57
581 9282 2.117206 AGCCACGCCCCAATTCAA 59.883 55.556 0.00 0.00 0.00 2.69
582 9283 2.676121 CAGCCACGCCCCAATTCA 60.676 61.111 0.00 0.00 0.00 2.57
583 9284 3.451894 CCAGCCACGCCCCAATTC 61.452 66.667 0.00 0.00 0.00 2.17
584 9285 2.803593 AATCCAGCCACGCCCCAATT 62.804 55.000 0.00 0.00 0.00 2.32
585 9286 2.803593 AAATCCAGCCACGCCCCAAT 62.804 55.000 0.00 0.00 0.00 3.16
586 9287 3.521765 AAATCCAGCCACGCCCCAA 62.522 57.895 0.00 0.00 0.00 4.12
587 9288 3.936772 GAAATCCAGCCACGCCCCA 62.937 63.158 0.00 0.00 0.00 4.96
588 9289 3.140814 GAAATCCAGCCACGCCCC 61.141 66.667 0.00 0.00 0.00 5.80
589 9290 1.322538 ATTGAAATCCAGCCACGCCC 61.323 55.000 0.00 0.00 0.00 6.13
590 9291 0.101219 GATTGAAATCCAGCCACGCC 59.899 55.000 0.00 0.00 0.00 5.68
591 9292 0.248215 CGATTGAAATCCAGCCACGC 60.248 55.000 0.00 0.00 31.68 5.34
592 9293 1.368641 TCGATTGAAATCCAGCCACG 58.631 50.000 0.00 0.00 31.68 4.94
593 9294 2.032549 CGATCGATTGAAATCCAGCCAC 60.033 50.000 10.26 0.00 31.68 5.01
594 9295 2.158971 TCGATCGATTGAAATCCAGCCA 60.159 45.455 15.15 0.00 31.68 4.75
595 9296 2.478134 CTCGATCGATTGAAATCCAGCC 59.522 50.000 19.78 0.00 31.68 4.85
596 9297 3.183373 GTCTCGATCGATTGAAATCCAGC 59.817 47.826 19.78 0.00 31.68 4.85
597 9298 4.615949 AGTCTCGATCGATTGAAATCCAG 58.384 43.478 19.78 2.67 31.68 3.86
598 9299 4.655762 AGTCTCGATCGATTGAAATCCA 57.344 40.909 19.78 0.00 31.68 3.41
599 9300 6.074249 GGTTAAGTCTCGATCGATTGAAATCC 60.074 42.308 19.78 12.71 31.68 3.01
600 9301 6.475727 TGGTTAAGTCTCGATCGATTGAAATC 59.524 38.462 19.78 10.35 0.00 2.17
601 9302 6.338146 TGGTTAAGTCTCGATCGATTGAAAT 58.662 36.000 19.78 8.10 0.00 2.17
602 9303 5.716094 TGGTTAAGTCTCGATCGATTGAAA 58.284 37.500 19.78 7.07 0.00 2.69
603 9304 5.319140 TGGTTAAGTCTCGATCGATTGAA 57.681 39.130 19.78 6.16 0.00 2.69
604 9305 4.976224 TGGTTAAGTCTCGATCGATTGA 57.024 40.909 19.78 14.67 0.00 2.57
605 9306 6.477033 AGAATTGGTTAAGTCTCGATCGATTG 59.523 38.462 19.78 8.23 36.59 2.67
606 9307 6.574350 AGAATTGGTTAAGTCTCGATCGATT 58.426 36.000 19.78 12.81 36.59 3.34
607 9308 6.150396 AGAATTGGTTAAGTCTCGATCGAT 57.850 37.500 19.78 6.20 36.59 3.59
608 9309 5.578005 AGAATTGGTTAAGTCTCGATCGA 57.422 39.130 18.32 18.32 36.59 3.59
609 9310 5.874892 GAGAATTGGTTAAGTCTCGATCG 57.125 43.478 9.36 9.36 44.82 3.69
615 9316 6.591935 TGTTGACTGAGAATTGGTTAAGTCT 58.408 36.000 0.00 0.00 43.32 3.24
616 9317 6.861065 TGTTGACTGAGAATTGGTTAAGTC 57.139 37.500 0.00 0.00 35.66 3.01
617 9318 6.601613 TGTTGTTGACTGAGAATTGGTTAAGT 59.398 34.615 0.00 0.00 0.00 2.24
618 9319 7.026631 TGTTGTTGACTGAGAATTGGTTAAG 57.973 36.000 0.00 0.00 0.00 1.85
619 9320 7.094162 TGTTGTTGTTGACTGAGAATTGGTTAA 60.094 33.333 0.00 0.00 0.00 2.01
620 9321 6.375736 TGTTGTTGTTGACTGAGAATTGGTTA 59.624 34.615 0.00 0.00 0.00 2.85
621 9322 5.184864 TGTTGTTGTTGACTGAGAATTGGTT 59.815 36.000 0.00 0.00 0.00 3.67
622 9323 4.704540 TGTTGTTGTTGACTGAGAATTGGT 59.295 37.500 0.00 0.00 0.00 3.67
623 9324 5.247507 TGTTGTTGTTGACTGAGAATTGG 57.752 39.130 0.00 0.00 0.00 3.16
624 9325 6.574832 CGTATGTTGTTGTTGACTGAGAATTG 59.425 38.462 0.00 0.00 0.00 2.32
625 9326 6.481976 TCGTATGTTGTTGTTGACTGAGAATT 59.518 34.615 0.00 0.00 0.00 2.17
626 9327 5.989168 TCGTATGTTGTTGTTGACTGAGAAT 59.011 36.000 0.00 0.00 0.00 2.40
627 9328 5.353111 TCGTATGTTGTTGTTGACTGAGAA 58.647 37.500 0.00 0.00 0.00 2.87
628 9329 4.939271 TCGTATGTTGTTGTTGACTGAGA 58.061 39.130 0.00 0.00 0.00 3.27
629 9330 5.651172 TTCGTATGTTGTTGTTGACTGAG 57.349 39.130 0.00 0.00 0.00 3.35
630 9331 6.424176 TTTTCGTATGTTGTTGTTGACTGA 57.576 33.333 0.00 0.00 0.00 3.41
631 9332 6.964370 TCTTTTTCGTATGTTGTTGTTGACTG 59.036 34.615 0.00 0.00 0.00 3.51
632 9333 7.079182 TCTTTTTCGTATGTTGTTGTTGACT 57.921 32.000 0.00 0.00 0.00 3.41
633 9334 7.728580 TTCTTTTTCGTATGTTGTTGTTGAC 57.271 32.000 0.00 0.00 0.00 3.18
634 9335 8.744008 TTTTCTTTTTCGTATGTTGTTGTTGA 57.256 26.923 0.00 0.00 0.00 3.18
635 9336 8.855279 TCTTTTCTTTTTCGTATGTTGTTGTTG 58.145 29.630 0.00 0.00 0.00 3.33
636 9337 8.973835 TCTTTTCTTTTTCGTATGTTGTTGTT 57.026 26.923 0.00 0.00 0.00 2.83
637 9338 8.973835 TTCTTTTCTTTTTCGTATGTTGTTGT 57.026 26.923 0.00 0.00 0.00 3.32
669 9370 9.428097 GGAGATCTATGCAAAATTTTGTTTTCT 57.572 29.630 27.13 19.97 40.24 2.52
670 9371 9.206870 TGGAGATCTATGCAAAATTTTGTTTTC 57.793 29.630 27.13 14.07 40.24 2.29
671 9372 8.992073 GTGGAGATCTATGCAAAATTTTGTTTT 58.008 29.630 27.13 16.51 40.24 2.43
672 9373 7.329226 CGTGGAGATCTATGCAAAATTTTGTTT 59.671 33.333 27.13 18.54 40.24 2.83
673 9374 6.808212 CGTGGAGATCTATGCAAAATTTTGTT 59.192 34.615 27.13 18.83 40.24 2.83
674 9375 6.071952 ACGTGGAGATCTATGCAAAATTTTGT 60.072 34.615 27.13 14.27 40.24 2.83
675 9376 6.324819 ACGTGGAGATCTATGCAAAATTTTG 58.675 36.000 23.74 23.74 41.03 2.44
676 9377 6.515272 ACGTGGAGATCTATGCAAAATTTT 57.485 33.333 0.00 0.00 0.00 1.82
677 9378 7.552687 TCTTACGTGGAGATCTATGCAAAATTT 59.447 33.333 0.00 0.00 0.00 1.82
678 9379 7.047891 TCTTACGTGGAGATCTATGCAAAATT 58.952 34.615 0.00 0.00 0.00 1.82
679 9380 6.582636 TCTTACGTGGAGATCTATGCAAAAT 58.417 36.000 0.00 0.00 0.00 1.82
680 9381 5.972935 TCTTACGTGGAGATCTATGCAAAA 58.027 37.500 0.00 0.00 0.00 2.44
681 9382 5.592104 TCTTACGTGGAGATCTATGCAAA 57.408 39.130 0.00 0.00 0.00 3.68
682 9383 5.069119 ACATCTTACGTGGAGATCTATGCAA 59.931 40.000 11.86 0.00 31.66 4.08
683 9384 4.584743 ACATCTTACGTGGAGATCTATGCA 59.415 41.667 11.86 0.00 31.66 3.96
684 9385 5.127693 ACATCTTACGTGGAGATCTATGC 57.872 43.478 11.86 0.00 31.66 3.14
685 9386 6.146216 GTGACATCTTACGTGGAGATCTATG 58.854 44.000 11.86 6.84 31.66 2.23
686 9387 5.049336 CGTGACATCTTACGTGGAGATCTAT 60.049 44.000 11.86 3.47 35.70 1.98
687 9388 4.272748 CGTGACATCTTACGTGGAGATCTA 59.727 45.833 11.86 1.93 35.70 1.98
688 9389 3.065510 CGTGACATCTTACGTGGAGATCT 59.934 47.826 11.86 0.00 35.70 2.75
689 9390 3.364062 CGTGACATCTTACGTGGAGATC 58.636 50.000 11.86 5.68 35.70 2.75
690 9391 2.099263 CCGTGACATCTTACGTGGAGAT 59.901 50.000 9.65 9.65 38.56 2.75
691 9392 1.471287 CCGTGACATCTTACGTGGAGA 59.529 52.381 0.00 1.57 38.56 3.71
692 9393 1.471287 TCCGTGACATCTTACGTGGAG 59.529 52.381 0.00 0.00 38.56 3.86
693 9394 1.536940 TCCGTGACATCTTACGTGGA 58.463 50.000 0.00 0.00 38.56 4.02
694 9395 2.579207 ATCCGTGACATCTTACGTGG 57.421 50.000 0.00 0.00 38.56 4.94
695 9396 3.033873 CGTATCCGTGACATCTTACGTG 58.966 50.000 0.00 0.00 38.56 4.49
696 9397 2.032550 CCGTATCCGTGACATCTTACGT 59.967 50.000 0.00 0.00 38.56 3.57
697 9398 2.288729 TCCGTATCCGTGACATCTTACG 59.711 50.000 0.00 0.00 39.83 3.18
698 9399 3.976793 TCCGTATCCGTGACATCTTAC 57.023 47.619 0.00 0.00 0.00 2.34
699 9400 4.319984 CGATTCCGTATCCGTGACATCTTA 60.320 45.833 0.00 0.00 0.00 2.10
700 9401 3.550233 CGATTCCGTATCCGTGACATCTT 60.550 47.826 0.00 0.00 0.00 2.40
701 9402 2.031069 CGATTCCGTATCCGTGACATCT 60.031 50.000 0.00 0.00 0.00 2.90
702 9403 2.031420 TCGATTCCGTATCCGTGACATC 60.031 50.000 0.00 0.00 37.05 3.06
703 9404 1.951602 TCGATTCCGTATCCGTGACAT 59.048 47.619 0.00 0.00 37.05 3.06
704 9405 1.332686 CTCGATTCCGTATCCGTGACA 59.667 52.381 0.00 0.00 37.05 3.58
705 9406 1.332997 ACTCGATTCCGTATCCGTGAC 59.667 52.381 0.00 0.00 37.05 3.67
706 9407 1.332686 CACTCGATTCCGTATCCGTGA 59.667 52.381 0.00 0.00 35.10 4.35
707 9408 1.755161 CACTCGATTCCGTATCCGTG 58.245 55.000 0.00 0.00 37.05 4.94
708 9409 0.030369 GCACTCGATTCCGTATCCGT 59.970 55.000 0.00 0.00 37.05 4.69
709 9410 0.997226 CGCACTCGATTCCGTATCCG 60.997 60.000 0.00 0.00 38.10 4.18
710 9411 0.309922 TCGCACTCGATTCCGTATCC 59.690 55.000 0.00 0.00 40.21 2.59
711 9412 3.839654 TCGCACTCGATTCCGTATC 57.160 52.632 0.00 0.00 40.21 2.24
720 9421 2.256174 CTAAATTTCGGTCGCACTCGA 58.744 47.619 0.00 0.00 43.28 4.04
721 9422 1.266891 GCTAAATTTCGGTCGCACTCG 60.267 52.381 0.00 0.00 0.00 4.18
722 9423 1.730064 TGCTAAATTTCGGTCGCACTC 59.270 47.619 0.00 0.00 0.00 3.51
723 9424 1.803334 TGCTAAATTTCGGTCGCACT 58.197 45.000 0.00 0.00 0.00 4.40
724 9425 2.604969 TTGCTAAATTTCGGTCGCAC 57.395 45.000 0.00 0.00 0.00 5.34
725 9426 2.096819 GGATTGCTAAATTTCGGTCGCA 59.903 45.455 0.00 0.00 0.00 5.10
726 9427 2.540973 GGGATTGCTAAATTTCGGTCGC 60.541 50.000 0.00 0.00 0.00 5.19
727 9428 2.286184 CGGGATTGCTAAATTTCGGTCG 60.286 50.000 0.00 0.00 0.00 4.79
728 9429 2.940410 TCGGGATTGCTAAATTTCGGTC 59.060 45.455 0.00 0.00 0.00 4.79
729 9430 2.993937 TCGGGATTGCTAAATTTCGGT 58.006 42.857 0.00 0.00 0.00 4.69
730 9431 4.568152 ATTCGGGATTGCTAAATTTCGG 57.432 40.909 0.00 0.00 0.00 4.30
731 9432 5.871531 CAATTCGGGATTGCTAAATTTCG 57.128 39.130 0.00 0.00 38.79 3.46
764 9465 1.202818 GCCGCCCTCCAGATTCTATTT 60.203 52.381 0.00 0.00 0.00 1.40
774 9475 2.819984 GATTCAGTTGCCGCCCTCCA 62.820 60.000 0.00 0.00 0.00 3.86
778 9487 0.960364 TTGAGATTCAGTTGCCGCCC 60.960 55.000 0.00 0.00 0.00 6.13
848 9562 2.748605 GCTCTCTCTCTCTCTCTCTCG 58.251 57.143 0.00 0.00 0.00 4.04
937 11689 2.358737 GGGCGGATAAGGGCATCG 60.359 66.667 0.00 0.00 0.00 3.84
1199 11970 6.128117 TGCAGAAATATACCACGGAAAAGAAC 60.128 38.462 0.00 0.00 0.00 3.01
1202 11973 5.811399 TGCAGAAATATACCACGGAAAAG 57.189 39.130 0.00 0.00 0.00 2.27
1204 11975 4.093703 CGTTGCAGAAATATACCACGGAAA 59.906 41.667 0.00 0.00 0.00 3.13
1205 11976 3.619483 CGTTGCAGAAATATACCACGGAA 59.381 43.478 0.00 0.00 0.00 4.30
1206 11977 3.191669 CGTTGCAGAAATATACCACGGA 58.808 45.455 0.00 0.00 0.00 4.69
1207 11978 2.286833 CCGTTGCAGAAATATACCACGG 59.713 50.000 5.03 5.03 0.00 4.94
1208 11979 3.191669 TCCGTTGCAGAAATATACCACG 58.808 45.455 0.00 0.00 0.00 4.94
1211 11982 6.526674 CACTTTTTCCGTTGCAGAAATATACC 59.473 38.462 0.96 0.00 33.45 2.73
1263 12046 0.179045 AAGAAACCTGCAGTGTCGCT 60.179 50.000 13.81 8.20 37.84 4.93
1281 12064 2.435372 AACAGAGCAGTTTCCACCAA 57.565 45.000 0.00 0.00 0.00 3.67
1294 12077 4.989168 GGCCCGTGAATATACTAAACAGAG 59.011 45.833 0.00 0.00 0.00 3.35
1306 12089 1.208706 TGATCCAAGGCCCGTGAATA 58.791 50.000 0.00 0.00 0.00 1.75
1450 12257 6.360618 ACTCTCATGTTTTCAGAAAAGGTCT 58.639 36.000 8.67 0.00 36.88 3.85
1451 12258 6.625873 ACTCTCATGTTTTCAGAAAAGGTC 57.374 37.500 8.67 0.00 0.00 3.85
1452 12259 7.410120 AAACTCTCATGTTTTCAGAAAAGGT 57.590 32.000 8.67 0.00 36.86 3.50
1453 12260 9.455847 CTTAAACTCTCATGTTTTCAGAAAAGG 57.544 33.333 8.67 2.57 40.23 3.11
1455 12262 9.787532 CACTTAAACTCTCATGTTTTCAGAAAA 57.212 29.630 4.06 4.06 40.23 2.29
1456 12263 8.405531 CCACTTAAACTCTCATGTTTTCAGAAA 58.594 33.333 0.00 0.00 40.23 2.52
1457 12264 7.013274 CCCACTTAAACTCTCATGTTTTCAGAA 59.987 37.037 0.00 0.00 40.23 3.02
1458 12265 6.486657 CCCACTTAAACTCTCATGTTTTCAGA 59.513 38.462 0.00 0.00 40.23 3.27
1459 12266 6.294176 CCCCACTTAAACTCTCATGTTTTCAG 60.294 42.308 0.00 0.00 40.23 3.02
1461 12268 5.768164 TCCCCACTTAAACTCTCATGTTTTC 59.232 40.000 0.00 0.00 40.23 2.29
1467 12274 4.351111 ACACTTCCCCACTTAAACTCTCAT 59.649 41.667 0.00 0.00 0.00 2.90
1562 12377 9.111702 TGTTTTATTTACGGTATTTGTTTACGC 57.888 29.630 0.00 0.00 0.00 4.42
1699 12523 7.538303 AAACAACTGCCAAAAATAGAACTTG 57.462 32.000 0.00 0.00 0.00 3.16
1892 12720 3.619038 GCAAGGAGACAGCATACAAGTAC 59.381 47.826 0.00 0.00 34.26 2.73
2005 12834 5.996513 TGCCTATTTACCGTTCTGTTTAACA 59.003 36.000 0.00 0.00 0.00 2.41
2014 12843 5.292589 TCGAAGATTTGCCTATTTACCGTTC 59.707 40.000 0.00 0.00 0.00 3.95
2056 12885 8.723942 ATACTCTGCCGGATTATGAATTTATC 57.276 34.615 5.05 0.00 0.00 1.75
2072 12901 2.225467 GGCTCCATTTGATACTCTGCC 58.775 52.381 0.00 0.00 0.00 4.85
2077 12908 2.705658 TCATCGGGCTCCATTTGATACT 59.294 45.455 0.00 0.00 0.00 2.12
2079 12910 4.074259 CAATCATCGGGCTCCATTTGATA 58.926 43.478 0.00 0.00 0.00 2.15
2080 12911 2.889045 CAATCATCGGGCTCCATTTGAT 59.111 45.455 0.00 0.00 0.00 2.57
2352 13198 4.020617 CCAGCAGAGGGGCAACGA 62.021 66.667 0.00 0.00 35.83 3.85
2428 13274 7.510720 ATCTCTGAAGAATGCAATCTATGCCG 61.511 42.308 4.33 0.00 44.27 5.69
2631 13478 0.850100 AATTGGGGGATATGCCACGA 59.150 50.000 15.93 12.17 42.92 4.35
2668 13515 4.453819 CCACAGAACAAAGCTCTAAGGAAG 59.546 45.833 0.00 0.00 0.00 3.46
2670 13517 3.646162 TCCACAGAACAAAGCTCTAAGGA 59.354 43.478 0.00 0.00 0.00 3.36
2671 13518 4.008074 TCCACAGAACAAAGCTCTAAGG 57.992 45.455 0.00 0.00 0.00 2.69
2929 13776 5.833131 TCCTATATTTGGGGAAATGAGCAAC 59.167 40.000 0.00 0.00 0.00 4.17
2963 13810 9.294030 CTCTGCAAGTAATTCAAATGGAATAAC 57.706 33.333 0.00 0.00 39.38 1.89
2980 13827 3.743521 TGTACAAATGAGCTCTGCAAGT 58.256 40.909 16.19 9.58 33.76 3.16
3048 13895 5.008712 GGAAGCCAATATAACAACCAGCTAC 59.991 44.000 0.00 0.00 0.00 3.58
3295 14177 3.976793 AGTGCACAAAGTCATTCAGTG 57.023 42.857 21.04 0.00 0.00 3.66
3299 14181 2.290641 ACGGAAGTGCACAAAGTCATTC 59.709 45.455 21.04 11.64 46.97 2.67
3730 14615 5.673337 TTATCACAAGTTTGAGTCACAGC 57.327 39.130 0.00 0.00 0.00 4.40
3786 14672 3.980698 AGCTGCCCCTAGTATGGAAATTA 59.019 43.478 0.00 0.00 0.00 1.40
3814 14700 1.005037 TTCACCTACGCACTGCAGG 60.005 57.895 19.93 8.27 35.45 4.85
3893 14779 4.478206 TCTAGGCTGTGAGGATGAAAAG 57.522 45.455 0.00 0.00 0.00 2.27
4037 14923 4.380233 GCCAACTGAGAAACATCCATGAAG 60.380 45.833 0.00 0.00 0.00 3.02
4089 14975 9.361315 CATGAAATCTCAAAGTATGCAAATGAA 57.639 29.630 0.00 0.00 34.49 2.57
4107 14993 3.191371 GGTGTGTGGAAGGTCATGAAATC 59.809 47.826 0.00 0.00 0.00 2.17
4108 14994 3.157087 GGTGTGTGGAAGGTCATGAAAT 58.843 45.455 0.00 0.00 0.00 2.17
4112 14998 1.979855 TTGGTGTGTGGAAGGTCATG 58.020 50.000 0.00 0.00 0.00 3.07
4116 15002 2.525105 ACTTTTGGTGTGTGGAAGGT 57.475 45.000 0.00 0.00 0.00 3.50
4220 15112 1.134788 ACTGCTACTATGGTGAACGCC 60.135 52.381 0.00 0.00 0.00 5.68
4277 15169 3.513515 GAGATGATGATAGAGGGACCACC 59.486 52.174 0.00 0.00 40.67 4.61
4278 15170 3.192422 CGAGATGATGATAGAGGGACCAC 59.808 52.174 0.00 0.00 0.00 4.16
4279 15171 3.425659 CGAGATGATGATAGAGGGACCA 58.574 50.000 0.00 0.00 0.00 4.02
4456 15351 6.164408 TGAATATGAAAGCAACAGTGTACG 57.836 37.500 0.00 0.00 0.00 3.67
4458 15353 8.165239 AGTTTGAATATGAAAGCAACAGTGTA 57.835 30.769 0.00 0.00 0.00 2.90
4463 15358 7.172532 ACGACTAGTTTGAATATGAAAGCAACA 59.827 33.333 0.00 0.00 0.00 3.33
4474 15369 8.508875 GGAAAAATGGAACGACTAGTTTGAATA 58.491 33.333 0.00 0.00 44.35 1.75
4478 15373 5.009210 TGGGAAAAATGGAACGACTAGTTTG 59.991 40.000 0.00 0.00 44.35 2.93
4517 15412 5.664294 TCTTGGTTAGCTTCCGTTATACA 57.336 39.130 0.00 0.00 0.00 2.29
4518 15413 6.278363 TCATCTTGGTTAGCTTCCGTTATAC 58.722 40.000 0.00 0.00 0.00 1.47
4620 15518 2.230992 CAGAACTCCCAGACAGACAGAG 59.769 54.545 0.00 0.00 0.00 3.35
4626 15524 0.610687 GGACCAGAACTCCCAGACAG 59.389 60.000 0.00 0.00 0.00 3.51
4632 15530 0.610687 CAGTGAGGACCAGAACTCCC 59.389 60.000 0.00 0.00 32.80 4.30
4650 15548 0.251033 ATGTGGCAGAAGCTGAAGCA 60.251 50.000 4.90 0.00 45.16 3.91
4912 15852 5.163088 ACCTCCAGAATTACCAAAAGAGTGT 60.163 40.000 0.00 0.00 0.00 3.55
4925 15865 6.485171 AGCTGTTTAATGTACCTCCAGAATT 58.515 36.000 0.00 0.00 0.00 2.17
4946 15886 8.470657 AAAGAAGAATAAGAAAAGGACAAGCT 57.529 30.769 0.00 0.00 0.00 3.74
5008 15953 1.881973 TGAATCCTGCAGCAAAGACAC 59.118 47.619 8.66 0.00 0.00 3.67
5045 15991 6.006275 AGGATGCATACAACAGGTAGAAAT 57.994 37.500 12.53 0.00 34.92 2.17
5114 16060 5.527582 GGGAAGCGAAATAAGCATCTAAAGA 59.472 40.000 0.00 0.00 37.01 2.52
5172 16118 3.701241 TCCGCTGAAAAACACAATGAAC 58.299 40.909 0.00 0.00 0.00 3.18
5241 16187 2.606272 GGTTCGCCCGTAGAAAATGTAG 59.394 50.000 0.00 0.00 0.00 2.74
5340 16286 5.978934 TGTGACGGTTCTTTCTTTTCTAC 57.021 39.130 0.00 0.00 0.00 2.59
5367 16313 2.550208 CCGGTAAGGTTTTGTCAGCTCT 60.550 50.000 0.00 0.00 34.51 4.09
5406 16352 1.202582 GGCTGATATCCGACTACGCAT 59.797 52.381 0.00 0.00 38.29 4.73
5407 16353 0.596577 GGCTGATATCCGACTACGCA 59.403 55.000 0.00 0.00 38.29 5.24
5408 16354 0.596577 TGGCTGATATCCGACTACGC 59.403 55.000 1.38 0.00 38.29 4.42
5409 16355 1.401670 GCTGGCTGATATCCGACTACG 60.402 57.143 1.38 0.00 39.43 3.51
5410 16356 1.067495 GGCTGGCTGATATCCGACTAC 60.067 57.143 1.38 0.00 0.00 2.73
5411 16357 1.257743 GGCTGGCTGATATCCGACTA 58.742 55.000 1.38 0.00 0.00 2.59
5412 16358 1.476007 GGGCTGGCTGATATCCGACT 61.476 60.000 1.38 0.00 0.00 4.18
5413 16359 1.004440 GGGCTGGCTGATATCCGAC 60.004 63.158 0.00 0.00 0.00 4.79
5414 16360 2.574018 CGGGCTGGCTGATATCCGA 61.574 63.158 3.57 0.00 39.83 4.55
5519 16467 5.546499 ACCCAATCCAAACTCTAGTCTGTAA 59.454 40.000 0.00 0.00 0.00 2.41
5544 16492 8.677148 AATTACAAACAATCACACACTAGACT 57.323 30.769 0.00 0.00 0.00 3.24
5547 16495 9.897744 AATGAATTACAAACAATCACACACTAG 57.102 29.630 0.00 0.00 0.00 2.57
5584 16532 2.058593 AGGGGCTTGCTTGCTTATAC 57.941 50.000 1.96 0.00 0.00 1.47
5585 16533 2.291540 ACAAGGGGCTTGCTTGCTTATA 60.292 45.455 0.00 0.00 44.43 0.98
5586 16534 1.188863 CAAGGGGCTTGCTTGCTTAT 58.811 50.000 0.00 0.00 34.63 1.73
5587 16535 0.178964 ACAAGGGGCTTGCTTGCTTA 60.179 50.000 0.00 0.00 44.43 3.09
5588 16536 0.178964 TACAAGGGGCTTGCTTGCTT 60.179 50.000 0.00 0.00 44.43 3.91
5589 16537 0.895559 GTACAAGGGGCTTGCTTGCT 60.896 55.000 0.00 0.00 44.43 3.91
5590 16538 1.586541 GTACAAGGGGCTTGCTTGC 59.413 57.895 0.00 0.00 44.43 4.01
5591 16539 1.250840 GGGTACAAGGGGCTTGCTTG 61.251 60.000 0.00 0.00 44.43 4.01
5619 16567 7.767659 TCCATCATCTCTTTTCAGTCAGTATTG 59.232 37.037 0.00 0.00 0.00 1.90
5745 16695 7.908601 GTGTTCGTTTCAAGTTTAAACAGAGAT 59.091 33.333 20.06 0.00 36.78 2.75
5748 16698 6.016718 CGTGTTCGTTTCAAGTTTAAACAGA 58.983 36.000 20.06 13.98 36.78 3.41
5784 16734 2.094675 AGACATTTCTGATTTGCCCCG 58.905 47.619 0.00 0.00 0.00 5.73
5871 16821 7.531716 ACTTGTCGTGTTTTAGTTCAAATTCA 58.468 30.769 0.00 0.00 0.00 2.57
5872 16822 7.964545 ACTTGTCGTGTTTTAGTTCAAATTC 57.035 32.000 0.00 0.00 0.00 2.17
5875 16825 9.843334 AAAATACTTGTCGTGTTTTAGTTCAAA 57.157 25.926 0.00 0.00 42.68 2.69
5876 16826 9.279904 CAAAATACTTGTCGTGTTTTAGTTCAA 57.720 29.630 0.00 0.00 42.63 2.69
5877 16827 7.911205 CCAAAATACTTGTCGTGTTTTAGTTCA 59.089 33.333 0.00 0.00 42.63 3.18
5879 16829 7.987649 TCCAAAATACTTGTCGTGTTTTAGTT 58.012 30.769 0.00 0.00 42.63 2.24
5880 16830 7.556733 TCCAAAATACTTGTCGTGTTTTAGT 57.443 32.000 0.00 0.00 42.63 2.24
5881 16831 7.111041 CGTTCCAAAATACTTGTCGTGTTTTAG 59.889 37.037 0.00 0.00 42.63 1.85
5882 16832 6.906143 CGTTCCAAAATACTTGTCGTGTTTTA 59.094 34.615 0.00 0.00 42.63 1.52
5883 16833 5.740099 CGTTCCAAAATACTTGTCGTGTTTT 59.260 36.000 0.00 0.00 44.50 2.43
5884 16834 5.267776 CGTTCCAAAATACTTGTCGTGTTT 58.732 37.500 0.00 0.00 38.40 2.83
5885 16835 4.260866 CCGTTCCAAAATACTTGTCGTGTT 60.261 41.667 0.00 0.00 0.00 3.32
5886 16836 3.249080 CCGTTCCAAAATACTTGTCGTGT 59.751 43.478 0.00 0.00 0.00 4.49
5887 16837 3.495377 TCCGTTCCAAAATACTTGTCGTG 59.505 43.478 0.00 0.00 0.00 4.35
5888 16838 3.731089 TCCGTTCCAAAATACTTGTCGT 58.269 40.909 0.00 0.00 0.00 4.34
5889 16839 3.124636 CCTCCGTTCCAAAATACTTGTCG 59.875 47.826 0.00 0.00 0.00 4.35
5890 16840 3.439129 CCCTCCGTTCCAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
5891 16841 3.418047 CCCTCCGTTCCAAAATACTTGT 58.582 45.455 0.00 0.00 0.00 3.16
5950 16913 1.762957 GATCGTCCTCCCTCCATTCAA 59.237 52.381 0.00 0.00 0.00 2.69
5966 16929 1.827969 AGTCCTTTCTCACAGGGATCG 59.172 52.381 0.00 0.00 31.50 3.69
5967 16930 2.093235 CCAGTCCTTTCTCACAGGGATC 60.093 54.545 0.00 0.00 31.50 3.36
5968 16931 1.912043 CCAGTCCTTTCTCACAGGGAT 59.088 52.381 0.00 0.00 31.50 3.85
6076 17039 1.837051 TAGGGGGCTATGTCCAGCG 60.837 63.158 0.00 0.00 42.76 5.18
6123 17086 4.180946 CTCTCCGTCACCGAGCCG 62.181 72.222 0.00 0.00 35.63 5.52
6129 17092 1.186267 ACCTCAACCTCTCCGTCACC 61.186 60.000 0.00 0.00 0.00 4.02
6132 17095 1.242665 ACGACCTCAACCTCTCCGTC 61.243 60.000 0.00 0.00 0.00 4.79
6151 17114 0.036765 GGCACCAAGTACACGATCCA 60.037 55.000 0.00 0.00 0.00 3.41
6186 17149 0.530744 TCAGTGGGGATTTCGACTCG 59.469 55.000 0.00 0.00 0.00 4.18
6201 17164 5.991606 TGAGACTGACGAATTGATTTTCAGT 59.008 36.000 15.95 15.95 41.86 3.41
6251 17214 8.097078 AGACAATTTAAGATGCATATGAGCTC 57.903 34.615 6.82 6.82 34.99 4.09
6277 17240 1.833630 TGGCTCTTCAGGTAGTCCATG 59.166 52.381 0.00 0.00 35.89 3.66
6282 17245 2.975489 CCCATATGGCTCTTCAGGTAGT 59.025 50.000 16.97 0.00 0.00 2.73
6316 17298 2.403259 CCAACCTTGAAACGGCAAATC 58.597 47.619 0.00 0.00 0.00 2.17
6320 17302 3.124686 GCCAACCTTGAAACGGCA 58.875 55.556 0.00 0.00 42.50 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.