Multiple sequence alignment - TraesCS4B01G012900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G012900 chr4B 100.000 4471 0 0 1 4471 8365261 8369731 0.000000e+00 8257.0
1 TraesCS4B01G012900 chr4B 87.522 1691 115 28 1088 2706 8206117 8207783 0.000000e+00 1866.0
2 TraesCS4B01G012900 chr4B 87.213 1697 115 29 1088 2706 8421508 8419836 0.000000e+00 1838.0
3 TraesCS4B01G012900 chr4B 91.517 1332 77 9 1271 2590 8117355 8118662 0.000000e+00 1801.0
4 TraesCS4B01G012900 chr4B 88.265 997 67 23 2222 3210 8418988 8418034 0.000000e+00 1147.0
5 TraesCS4B01G012900 chr4B 93.689 618 20 5 1002 1606 8423165 8422554 0.000000e+00 907.0
6 TraesCS4B01G012900 chr4B 82.421 694 90 19 2041 2707 8175296 8175984 1.080000e-160 577.0
7 TraesCS4B01G012900 chr4B 81.844 694 94 19 2041 2707 8293392 8294080 5.050000e-154 555.0
8 TraesCS4B01G012900 chr4B 92.550 349 13 2 1271 1606 7897489 7897141 5.200000e-134 488.0
9 TraesCS4B01G012900 chr4B 84.190 506 51 13 2789 3273 7762759 7763256 8.760000e-127 464.0
10 TraesCS4B01G012900 chr4B 84.190 506 51 13 2789 3273 7895404 7894907 8.760000e-127 464.0
11 TraesCS4B01G012900 chr4B 78.182 660 105 23 1131 1774 7744505 7745141 7.020000e-103 385.0
12 TraesCS4B01G012900 chr4B 100.000 185 0 0 1001 1185 7897699 7897515 4.280000e-90 342.0
13 TraesCS4B01G012900 chr4B 100.000 184 0 0 1002 1185 8117146 8117329 1.540000e-89 340.0
14 TraesCS4B01G012900 chr4B 92.735 234 16 1 1832 2065 8418013 8417781 1.990000e-88 337.0
15 TraesCS4B01G012900 chr4B 97.283 184 2 2 3041 3224 8975670 8975850 4.340000e-80 309.0
16 TraesCS4B01G012900 chr4B 93.464 153 8 2 3420 3572 8205768 8205918 4.500000e-55 226.0
17 TraesCS4B01G012900 chr4B 93.464 153 8 2 3420 3572 8421857 8421707 4.500000e-55 226.0
18 TraesCS4B01G012900 chr4D 91.762 1493 109 7 1341 2830 5010370 5008889 0.000000e+00 2063.0
19 TraesCS4B01G012900 chr4D 86.299 1686 130 39 1094 2706 5069540 5071197 0.000000e+00 1740.0
20 TraesCS4B01G012900 chr4D 95.289 849 40 0 3623 4471 168194824 168193976 0.000000e+00 1347.0
21 TraesCS4B01G012900 chr4D 82.133 694 88 22 2041 2707 5080406 5081090 3.020000e-156 562.0
22 TraesCS4B01G012900 chr4D 91.579 380 17 4 2872 3251 5008672 5008308 1.110000e-140 510.0
23 TraesCS4B01G012900 chr4D 89.119 193 8 7 3420 3609 5081994 5082176 1.250000e-55 228.0
24 TraesCS4B01G012900 chr4D 82.222 180 18 7 3359 3532 5082310 5082481 4.660000e-30 143.0
25 TraesCS4B01G012900 chr4D 98.413 63 1 0 3211 3273 5008299 5008237 1.310000e-20 111.0
26 TraesCS4B01G012900 chr4D 82.090 134 17 7 3307 3435 5008131 5008000 1.700000e-19 108.0
27 TraesCS4B01G012900 chr4D 77.397 146 21 5 1086 1228 5067302 5067166 4.800000e-10 76.8
28 TraesCS4B01G012900 chr4A 91.310 1450 79 17 1157 2590 598603362 598601944 0.000000e+00 1936.0
29 TraesCS4B01G012900 chr4A 94.673 995 52 1 1 994 733896629 733895635 0.000000e+00 1543.0
30 TraesCS4B01G012900 chr4A 81.911 1570 198 40 1057 2592 598607625 598609142 0.000000e+00 1247.0
31 TraesCS4B01G012900 chr4A 88.265 196 9 5 3419 3609 598600773 598600587 5.820000e-54 222.0
32 TraesCS4B01G012900 chr7B 95.531 1007 43 2 1 1007 640515939 640514935 0.000000e+00 1609.0
33 TraesCS4B01G012900 chr7B 91.156 995 84 4 1 995 74111475 74110485 0.000000e+00 1347.0
34 TraesCS4B01G012900 chr7B 81.444 997 174 7 1 997 577316576 577315591 0.000000e+00 806.0
35 TraesCS4B01G012900 chr2B 94.684 997 52 1 1 997 643173650 643172655 0.000000e+00 1546.0
36 TraesCS4B01G012900 chr2B 89.690 999 99 3 1 997 457691977 457692973 0.000000e+00 1271.0
37 TraesCS4B01G012900 chr5D 96.051 861 31 2 3609 4468 518965416 518966274 0.000000e+00 1399.0
38 TraesCS4B01G012900 chr5D 94.878 859 44 0 3610 4468 26740973 26740115 0.000000e+00 1343.0
39 TraesCS4B01G012900 chr1D 95.227 859 41 0 3610 4468 464785513 464786371 0.000000e+00 1360.0
40 TraesCS4B01G012900 chr1D 94.529 859 46 1 3610 4468 11339580 11340437 0.000000e+00 1325.0
41 TraesCS4B01G012900 chr3D 95.035 866 36 1 3610 4468 113579748 113580613 0.000000e+00 1354.0
42 TraesCS4B01G012900 chr3D 94.767 860 42 2 3610 4468 599485452 599486309 0.000000e+00 1336.0
43 TraesCS4B01G012900 chr7A 94.878 859 44 0 3610 4468 736667796 736668654 0.000000e+00 1343.0
44 TraesCS4B01G012900 chr5B 94.444 864 47 1 3604 4467 697802924 697803786 0.000000e+00 1328.0
45 TraesCS4B01G012900 chr2A 87.675 998 121 2 1 997 617160431 617159435 0.000000e+00 1160.0
46 TraesCS4B01G012900 chr5A 83.233 996 161 5 1 995 478024698 478023708 0.000000e+00 909.0
47 TraesCS4B01G012900 chr6B 82.440 672 111 5 329 997 25817988 25818655 8.340000e-162 580.0
48 TraesCS4B01G012900 chr6B 74.691 972 208 30 25 982 714012313 714011366 9.010000e-107 398.0
49 TraesCS4B01G012900 chr6B 74.916 897 194 28 119 1002 3865732 3866610 9.080000e-102 381.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G012900 chr4B 8365261 8369731 4470 False 8257.000000 8257 100.000000 1 4471 1 chr4B.!!$F5 4470
1 TraesCS4B01G012900 chr4B 8117146 8118662 1516 False 1070.500000 1801 95.758500 1002 2590 2 chr4B.!!$F7 1588
2 TraesCS4B01G012900 chr4B 8205768 8207783 2015 False 1046.000000 1866 90.493000 1088 3572 2 chr4B.!!$F8 2484
3 TraesCS4B01G012900 chr4B 8417781 8423165 5384 True 891.000000 1838 91.073200 1002 3572 5 chr4B.!!$R2 2570
4 TraesCS4B01G012900 chr4B 8175296 8175984 688 False 577.000000 577 82.421000 2041 2707 1 chr4B.!!$F3 666
5 TraesCS4B01G012900 chr4B 8293392 8294080 688 False 555.000000 555 81.844000 2041 2707 1 chr4B.!!$F4 666
6 TraesCS4B01G012900 chr4B 7894907 7897699 2792 True 431.333333 488 92.246667 1001 3273 3 chr4B.!!$R1 2272
7 TraesCS4B01G012900 chr4B 7744505 7745141 636 False 385.000000 385 78.182000 1131 1774 1 chr4B.!!$F1 643
8 TraesCS4B01G012900 chr4D 5069540 5071197 1657 False 1740.000000 1740 86.299000 1094 2706 1 chr4D.!!$F1 1612
9 TraesCS4B01G012900 chr4D 168193976 168194824 848 True 1347.000000 1347 95.289000 3623 4471 1 chr4D.!!$R2 848
10 TraesCS4B01G012900 chr4D 5008000 5010370 2370 True 698.000000 2063 90.961000 1341 3435 4 chr4D.!!$R3 2094
11 TraesCS4B01G012900 chr4D 5080406 5082481 2075 False 311.000000 562 84.491333 2041 3609 3 chr4D.!!$F2 1568
12 TraesCS4B01G012900 chr4A 733895635 733896629 994 True 1543.000000 1543 94.673000 1 994 1 chr4A.!!$R1 993
13 TraesCS4B01G012900 chr4A 598607625 598609142 1517 False 1247.000000 1247 81.911000 1057 2592 1 chr4A.!!$F1 1535
14 TraesCS4B01G012900 chr4A 598600587 598603362 2775 True 1079.000000 1936 89.787500 1157 3609 2 chr4A.!!$R2 2452
15 TraesCS4B01G012900 chr7B 640514935 640515939 1004 True 1609.000000 1609 95.531000 1 1007 1 chr7B.!!$R3 1006
16 TraesCS4B01G012900 chr7B 74110485 74111475 990 True 1347.000000 1347 91.156000 1 995 1 chr7B.!!$R1 994
17 TraesCS4B01G012900 chr7B 577315591 577316576 985 True 806.000000 806 81.444000 1 997 1 chr7B.!!$R2 996
18 TraesCS4B01G012900 chr2B 643172655 643173650 995 True 1546.000000 1546 94.684000 1 997 1 chr2B.!!$R1 996
19 TraesCS4B01G012900 chr2B 457691977 457692973 996 False 1271.000000 1271 89.690000 1 997 1 chr2B.!!$F1 996
20 TraesCS4B01G012900 chr5D 518965416 518966274 858 False 1399.000000 1399 96.051000 3609 4468 1 chr5D.!!$F1 859
21 TraesCS4B01G012900 chr5D 26740115 26740973 858 True 1343.000000 1343 94.878000 3610 4468 1 chr5D.!!$R1 858
22 TraesCS4B01G012900 chr1D 464785513 464786371 858 False 1360.000000 1360 95.227000 3610 4468 1 chr1D.!!$F2 858
23 TraesCS4B01G012900 chr1D 11339580 11340437 857 False 1325.000000 1325 94.529000 3610 4468 1 chr1D.!!$F1 858
24 TraesCS4B01G012900 chr3D 113579748 113580613 865 False 1354.000000 1354 95.035000 3610 4468 1 chr3D.!!$F1 858
25 TraesCS4B01G012900 chr3D 599485452 599486309 857 False 1336.000000 1336 94.767000 3610 4468 1 chr3D.!!$F2 858
26 TraesCS4B01G012900 chr7A 736667796 736668654 858 False 1343.000000 1343 94.878000 3610 4468 1 chr7A.!!$F1 858
27 TraesCS4B01G012900 chr5B 697802924 697803786 862 False 1328.000000 1328 94.444000 3604 4467 1 chr5B.!!$F1 863
28 TraesCS4B01G012900 chr2A 617159435 617160431 996 True 1160.000000 1160 87.675000 1 997 1 chr2A.!!$R1 996
29 TraesCS4B01G012900 chr5A 478023708 478024698 990 True 909.000000 909 83.233000 1 995 1 chr5A.!!$R1 994
30 TraesCS4B01G012900 chr6B 25817988 25818655 667 False 580.000000 580 82.440000 329 997 1 chr6B.!!$F2 668
31 TraesCS4B01G012900 chr6B 714011366 714012313 947 True 398.000000 398 74.691000 25 982 1 chr6B.!!$R1 957
32 TraesCS4B01G012900 chr6B 3865732 3866610 878 False 381.000000 381 74.916000 119 1002 1 chr6B.!!$F1 883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.394762 GCATGACAGGAAGATGGCCA 60.395 55.000 8.56 8.56 0.00 5.36 F
357 360 1.095807 GGCTCGCCGGAAAGCTATTT 61.096 55.000 22.89 0.00 38.58 1.40 F
1535 1656 1.455849 CACCCACATGGACCACACT 59.544 57.895 0.00 0.00 37.39 3.55 F
2368 4733 0.600255 ACCTTGTCGTCTCTTTGCGG 60.600 55.000 0.00 0.00 0.00 5.69 F
3364 8251 0.168348 GCTCGTCTCGTACTTCTGCA 59.832 55.000 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1252 1361 0.464373 GCTCCAAGAATCGGCCATCA 60.464 55.0 2.24 0.0 0.00 3.07 R
1983 4309 1.242076 CCATTGATTCCTCCGATGGC 58.758 55.0 0.00 0.0 31.39 4.40 R
2909 6821 0.036952 ATGTCGCAGGAGAAGTGTGG 60.037 55.0 0.00 0.0 0.00 4.17 R
3385 8272 0.179134 CACACTACTGCGCCTCTACC 60.179 60.0 4.18 0.0 0.00 3.18 R
4445 9347 0.900647 CTGGAGGGGTCTCTCGTGTT 60.901 60.0 0.00 0.0 39.86 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 0.394762 GCATGACAGGAAGATGGCCA 60.395 55.000 8.56 8.56 0.00 5.36
247 248 8.042515 TGAACATGTGATATCAAATCAGAGTGA 58.957 33.333 7.07 0.00 0.00 3.41
357 360 1.095807 GGCTCGCCGGAAAGCTATTT 61.096 55.000 22.89 0.00 38.58 1.40
436 439 1.734465 GGAGTTGGAGATCGCAACAAG 59.266 52.381 13.21 0.00 32.89 3.16
601 607 4.037222 TGCAGGGACAGATCAGGTAAATA 58.963 43.478 0.00 0.00 0.00 1.40
614 620 4.466370 TCAGGTAAATATCTAGGGGCATCG 59.534 45.833 0.00 0.00 0.00 3.84
710 716 4.378770 GCACGAGATTTGAATCTGCAGAAA 60.379 41.667 22.50 10.96 45.39 2.52
870 876 3.278574 CAGAATAATTTCGAGGCCCACA 58.721 45.455 0.00 0.00 36.93 4.17
1223 1253 2.291365 CGATTTGTGATCCATCCAGCA 58.709 47.619 0.00 0.00 0.00 4.41
1240 1270 1.470098 AGCATGAACAAGGCAATCGAC 59.530 47.619 0.00 0.00 0.00 4.20
1264 1373 1.734465 GGATCGATTGATGGCCGATTC 59.266 52.381 0.00 0.00 42.26 2.52
1265 1374 2.613977 GGATCGATTGATGGCCGATTCT 60.614 50.000 0.00 0.00 42.26 2.40
1266 1375 2.620251 TCGATTGATGGCCGATTCTT 57.380 45.000 0.00 0.00 0.00 2.52
1267 1376 2.212652 TCGATTGATGGCCGATTCTTG 58.787 47.619 0.00 0.00 0.00 3.02
1403 1524 2.047655 TTCGCCGACCGCAAGAAT 60.048 55.556 0.00 0.00 43.02 2.40
1535 1656 1.455849 CACCCACATGGACCACACT 59.544 57.895 0.00 0.00 37.39 3.55
1602 3919 1.655329 CTCGTCCTCCTATGCGTCC 59.345 63.158 0.00 0.00 0.00 4.79
1732 4049 3.865929 AACACCGACTCAGCCAGCG 62.866 63.158 0.00 0.00 0.00 5.18
1983 4309 0.671781 CCTCCCAAGCAAGACACTCG 60.672 60.000 0.00 0.00 0.00 4.18
1996 4322 1.330655 ACACTCGCCATCGGAGGAAT 61.331 55.000 0.00 0.00 36.13 3.01
2126 4464 1.077169 AGGGGTTTCAATCCAAGGTCC 59.923 52.381 0.00 0.00 0.00 4.46
2141 4479 3.115892 TCCGTTCGCGACATTGCC 61.116 61.111 9.15 0.00 44.71 4.52
2182 4520 0.652071 TATGTTGCGATGCTGCTTCG 59.348 50.000 27.25 27.25 39.55 3.79
2183 4521 1.985447 ATGTTGCGATGCTGCTTCGG 61.985 55.000 30.49 17.21 37.10 4.30
2212 4550 1.208293 CACAAGCTCCTCTAAGGTCCC 59.792 57.143 0.00 0.00 36.53 4.46
2216 4554 0.761323 GCTCCTCTAAGGTCCCCTCC 60.761 65.000 0.00 0.00 36.53 4.30
2253 4612 3.070076 GCATGGAGCATCGACAAGA 57.930 52.632 0.00 0.00 44.79 3.02
2260 4625 1.446099 GCATCGACAAGAGCCGTCA 60.446 57.895 0.00 0.00 32.72 4.35
2261 4626 1.687494 GCATCGACAAGAGCCGTCAC 61.687 60.000 0.00 0.00 32.72 3.67
2262 4627 1.154016 ATCGACAAGAGCCGTCACG 60.154 57.895 0.00 0.00 32.72 4.35
2266 4631 2.811317 CAAGAGCCGTCACGCCTC 60.811 66.667 0.00 0.00 0.00 4.70
2368 4733 0.600255 ACCTTGTCGTCTCTTTGCGG 60.600 55.000 0.00 0.00 0.00 5.69
2370 4735 1.336517 CCTTGTCGTCTCTTTGCGGTA 60.337 52.381 0.00 0.00 0.00 4.02
2411 4776 5.452776 CCTGCAGAATGATGCCATTGTTTAT 60.453 40.000 17.39 0.00 45.91 1.40
2627 5037 5.283457 ACTCCATGCTAAACTACCAGATC 57.717 43.478 0.00 0.00 0.00 2.75
2635 5045 5.528690 TGCTAAACTACCAGATCAATGCATC 59.471 40.000 0.00 0.00 0.00 3.91
2679 5097 2.788750 GCATCGTCGTATCACACACGTA 60.789 50.000 0.00 0.00 40.27 3.57
2709 5127 5.875910 TGTGTGTTTTAGGGTGGATAATACG 59.124 40.000 0.00 0.00 0.00 3.06
2710 5128 5.295045 GTGTGTTTTAGGGTGGATAATACGG 59.705 44.000 0.00 0.00 0.00 4.02
2711 5129 5.189342 TGTGTTTTAGGGTGGATAATACGGA 59.811 40.000 0.00 0.00 0.00 4.69
2718 6447 4.410883 AGGGTGGATAATACGGATTCAACA 59.589 41.667 0.00 0.00 0.00 3.33
2781 6512 1.676006 GACAGGTTTGGTGGACACTTG 59.324 52.381 2.13 0.00 0.00 3.16
2812 6543 5.576563 TGTTTGGGAGGAACTTATTGAGA 57.423 39.130 0.00 0.00 41.55 3.27
2862 6754 5.250082 AGCAATGAGATGGGAGCTGATATAA 59.750 40.000 0.00 0.00 0.00 0.98
2894 6806 1.092348 GGGGATGCTAACGGTGAAAC 58.908 55.000 0.00 0.00 0.00 2.78
2909 6821 4.563337 GTGAAACCCTAACCAGAACAAC 57.437 45.455 0.00 0.00 0.00 3.32
2923 6836 1.604278 GAACAACCACACTTCTCCTGC 59.396 52.381 0.00 0.00 0.00 4.85
2963 6886 2.557805 CGTGAGCGTTGCATGCTT 59.442 55.556 20.33 0.00 41.24 3.91
2967 6890 1.398041 GTGAGCGTTGCATGCTTATCA 59.602 47.619 20.33 12.57 41.24 2.15
2968 6891 2.083002 TGAGCGTTGCATGCTTATCAA 58.917 42.857 20.33 0.58 41.24 2.57
2969 6892 2.096335 TGAGCGTTGCATGCTTATCAAG 59.904 45.455 20.33 4.55 41.24 3.02
2970 6893 2.086869 AGCGTTGCATGCTTATCAAGT 58.913 42.857 20.33 0.00 37.07 3.16
2971 6894 2.489329 AGCGTTGCATGCTTATCAAGTT 59.511 40.909 20.33 0.00 37.07 2.66
2972 6895 3.057315 AGCGTTGCATGCTTATCAAGTTT 60.057 39.130 20.33 0.00 37.07 2.66
2973 6896 3.059834 GCGTTGCATGCTTATCAAGTTTG 59.940 43.478 20.33 0.00 0.00 2.93
2974 6897 3.609373 CGTTGCATGCTTATCAAGTTTGG 59.391 43.478 20.33 0.00 0.00 3.28
2975 6898 4.559153 GTTGCATGCTTATCAAGTTTGGT 58.441 39.130 20.33 0.00 0.00 3.67
2976 6899 5.618863 CGTTGCATGCTTATCAAGTTTGGTA 60.619 40.000 20.33 0.00 0.00 3.25
2977 6900 6.332630 GTTGCATGCTTATCAAGTTTGGTAT 58.667 36.000 20.33 0.00 0.00 2.73
2978 6901 6.528537 TGCATGCTTATCAAGTTTGGTATT 57.471 33.333 20.33 0.00 0.00 1.89
2979 6902 6.934056 TGCATGCTTATCAAGTTTGGTATTT 58.066 32.000 20.33 0.00 0.00 1.40
3033 6964 4.932146 AGAATAATGGTTGTATTTGCGCC 58.068 39.130 4.18 0.00 0.00 6.53
3104 7035 5.132502 TGTGGAATTTGATATGCCAGGTAG 58.867 41.667 0.00 0.00 0.00 3.18
3261 8066 4.018490 TGTTGCATGGAAGCTTGTATGAT 58.982 39.130 18.78 0.00 34.99 2.45
3273 8078 8.555361 GGAAGCTTGTATGATCTGAAAATAGTC 58.445 37.037 2.10 0.00 0.00 2.59
3276 8081 9.979578 AGCTTGTATGATCTGAAAATAGTCTAG 57.020 33.333 0.00 0.00 0.00 2.43
3287 8138 8.585881 TCTGAAAATAGTCTAGGGTATGTATGC 58.414 37.037 0.00 0.00 0.00 3.14
3307 8158 1.341209 CCCCTTGTTTTGCCTGTCTTC 59.659 52.381 0.00 0.00 0.00 2.87
3308 8159 2.310538 CCCTTGTTTTGCCTGTCTTCT 58.689 47.619 0.00 0.00 0.00 2.85
3317 8202 2.054799 TGCCTGTCTTCTAACCCTGTT 58.945 47.619 0.00 0.00 0.00 3.16
3319 8204 2.931320 GCCTGTCTTCTAACCCTGTTCG 60.931 54.545 0.00 0.00 0.00 3.95
3343 8229 3.136123 CTTCTGTGCCATGGCCCG 61.136 66.667 33.44 20.68 41.09 6.13
3360 8247 1.928769 CGCGCTCGTCTCGTACTTC 60.929 63.158 5.56 0.00 0.00 3.01
3364 8251 0.168348 GCTCGTCTCGTACTTCTGCA 59.832 55.000 0.00 0.00 0.00 4.41
3381 8268 4.135306 TCTGCATCCCGAACTACTACTAG 58.865 47.826 0.00 0.00 0.00 2.57
3385 8272 2.928334 TCCCGAACTACTACTAGCAGG 58.072 52.381 0.00 0.00 0.00 4.85
3387 8274 2.652590 CCGAACTACTACTAGCAGGGT 58.347 52.381 0.00 0.00 0.00 4.34
3394 8281 1.240256 CTACTAGCAGGGTAGAGGCG 58.760 60.000 12.09 0.00 38.99 5.52
3396 8283 2.043349 TAGCAGGGTAGAGGCGCA 60.043 61.111 10.83 0.00 0.00 6.09
3398 8285 2.856039 TAGCAGGGTAGAGGCGCAGT 62.856 60.000 10.83 0.00 0.00 4.40
3399 8286 2.423898 GCAGGGTAGAGGCGCAGTA 61.424 63.158 10.83 0.00 0.00 2.74
3400 8287 1.736586 CAGGGTAGAGGCGCAGTAG 59.263 63.158 10.83 0.00 0.00 2.57
3401 8288 1.038130 CAGGGTAGAGGCGCAGTAGT 61.038 60.000 10.83 0.00 0.00 2.73
3402 8289 1.038130 AGGGTAGAGGCGCAGTAGTG 61.038 60.000 10.83 0.00 0.00 2.74
3403 8290 1.321074 GGGTAGAGGCGCAGTAGTGT 61.321 60.000 10.83 0.00 0.00 3.55
3404 8291 0.179134 GGTAGAGGCGCAGTAGTGTG 60.179 60.000 10.83 6.75 37.24 3.82
3435 8325 3.699538 CCCTTGTTGGTTTAGCTTATCCC 59.300 47.826 0.00 0.00 0.00 3.85
3443 8333 3.754850 GGTTTAGCTTATCCCGTTGTTGT 59.245 43.478 0.00 0.00 0.00 3.32
3446 8336 1.539827 AGCTTATCCCGTTGTTGTTGC 59.460 47.619 0.00 0.00 0.00 4.17
3447 8337 1.539827 GCTTATCCCGTTGTTGTTGCT 59.460 47.619 0.00 0.00 0.00 3.91
3448 8338 2.668279 GCTTATCCCGTTGTTGTTGCTG 60.668 50.000 0.00 0.00 0.00 4.41
3449 8339 2.264005 TATCCCGTTGTTGTTGCTGT 57.736 45.000 0.00 0.00 0.00 4.40
3450 8340 1.398692 ATCCCGTTGTTGTTGCTGTT 58.601 45.000 0.00 0.00 0.00 3.16
3451 8341 1.178276 TCCCGTTGTTGTTGCTGTTT 58.822 45.000 0.00 0.00 0.00 2.83
3485 8375 6.600032 TGGAAAGTCAAGTAAAAGCAGTGTAA 59.400 34.615 0.00 0.00 0.00 2.41
3487 8377 8.780249 GGAAAGTCAAGTAAAAGCAGTGTAATA 58.220 33.333 0.00 0.00 0.00 0.98
3506 8397 2.414994 AGACAGTGGCAGATGAATGG 57.585 50.000 0.00 0.00 0.00 3.16
3508 8399 2.093075 AGACAGTGGCAGATGAATGGAG 60.093 50.000 0.00 0.00 0.00 3.86
3518 8409 7.446625 GTGGCAGATGAATGGAGAAGTATAATT 59.553 37.037 0.00 0.00 0.00 1.40
3526 8417 8.328758 TGAATGGAGAAGTATAATTGGAAGTGT 58.671 33.333 0.00 0.00 0.00 3.55
3532 8423 5.897377 AGTATAATTGGAAGTGTGTTGGC 57.103 39.130 0.00 0.00 0.00 4.52
3533 8424 5.570320 AGTATAATTGGAAGTGTGTTGGCT 58.430 37.500 0.00 0.00 0.00 4.75
3534 8425 6.010219 AGTATAATTGGAAGTGTGTTGGCTT 58.990 36.000 0.00 0.00 0.00 4.35
3535 8426 3.733443 AATTGGAAGTGTGTTGGCTTC 57.267 42.857 0.00 0.00 40.07 3.86
3536 8427 2.435372 TTGGAAGTGTGTTGGCTTCT 57.565 45.000 0.00 0.00 40.49 2.85
3537 8428 2.435372 TGGAAGTGTGTTGGCTTCTT 57.565 45.000 0.00 0.00 40.49 2.52
3538 8429 2.733956 TGGAAGTGTGTTGGCTTCTTT 58.266 42.857 0.00 0.00 40.49 2.52
3539 8430 3.096092 TGGAAGTGTGTTGGCTTCTTTT 58.904 40.909 0.00 0.00 40.49 2.27
3540 8431 3.119173 TGGAAGTGTGTTGGCTTCTTTTG 60.119 43.478 0.00 0.00 40.49 2.44
3541 8432 3.119137 GGAAGTGTGTTGGCTTCTTTTGT 60.119 43.478 0.00 0.00 40.49 2.83
3542 8433 4.494484 GAAGTGTGTTGGCTTCTTTTGTT 58.506 39.130 0.00 0.00 38.36 2.83
3543 8434 4.535526 AGTGTGTTGGCTTCTTTTGTTT 57.464 36.364 0.00 0.00 0.00 2.83
3544 8435 4.244862 AGTGTGTTGGCTTCTTTTGTTTG 58.755 39.130 0.00 0.00 0.00 2.93
3545 8436 3.370672 GTGTGTTGGCTTCTTTTGTTTGG 59.629 43.478 0.00 0.00 0.00 3.28
3546 8437 3.259374 TGTGTTGGCTTCTTTTGTTTGGA 59.741 39.130 0.00 0.00 0.00 3.53
3547 8438 4.249661 GTGTTGGCTTCTTTTGTTTGGAA 58.750 39.130 0.00 0.00 0.00 3.53
3548 8439 4.329801 GTGTTGGCTTCTTTTGTTTGGAAG 59.670 41.667 0.00 0.00 39.32 3.46
3554 8445 5.254339 CTTCTTTTGTTTGGAAGCTGACT 57.746 39.130 0.00 0.00 31.73 3.41
3555 8446 4.900635 TCTTTTGTTTGGAAGCTGACTC 57.099 40.909 0.00 0.00 0.00 3.36
3556 8447 4.526970 TCTTTTGTTTGGAAGCTGACTCT 58.473 39.130 0.00 0.00 0.00 3.24
3557 8448 4.336433 TCTTTTGTTTGGAAGCTGACTCTG 59.664 41.667 0.00 0.00 0.00 3.35
3558 8449 3.281727 TTGTTTGGAAGCTGACTCTGT 57.718 42.857 0.00 0.00 0.00 3.41
3559 8450 3.281727 TGTTTGGAAGCTGACTCTGTT 57.718 42.857 0.00 0.00 0.00 3.16
3560 8451 3.620488 TGTTTGGAAGCTGACTCTGTTT 58.380 40.909 0.00 0.00 0.00 2.83
3561 8452 4.776349 TGTTTGGAAGCTGACTCTGTTTA 58.224 39.130 0.00 0.00 0.00 2.01
3562 8453 4.574828 TGTTTGGAAGCTGACTCTGTTTAC 59.425 41.667 0.00 0.00 0.00 2.01
3563 8454 4.689612 TTGGAAGCTGACTCTGTTTACT 57.310 40.909 0.00 0.00 0.00 2.24
3564 8455 3.995199 TGGAAGCTGACTCTGTTTACTG 58.005 45.455 0.00 0.00 0.00 2.74
3565 8456 3.388024 TGGAAGCTGACTCTGTTTACTGT 59.612 43.478 0.00 0.00 0.00 3.55
3566 8457 4.587262 TGGAAGCTGACTCTGTTTACTGTA 59.413 41.667 0.00 0.00 0.00 2.74
3567 8458 5.069914 TGGAAGCTGACTCTGTTTACTGTAA 59.930 40.000 0.00 0.00 0.00 2.41
3568 8459 6.166982 GGAAGCTGACTCTGTTTACTGTAAT 58.833 40.000 0.37 0.00 0.00 1.89
3569 8460 6.651225 GGAAGCTGACTCTGTTTACTGTAATT 59.349 38.462 0.37 0.00 0.00 1.40
3570 8461 7.148557 GGAAGCTGACTCTGTTTACTGTAATTC 60.149 40.741 0.37 0.00 0.00 2.17
3571 8462 6.759272 AGCTGACTCTGTTTACTGTAATTCA 58.241 36.000 0.37 3.92 0.00 2.57
3572 8463 6.647067 AGCTGACTCTGTTTACTGTAATTCAC 59.353 38.462 0.37 0.00 0.00 3.18
3573 8464 6.647067 GCTGACTCTGTTTACTGTAATTCACT 59.353 38.462 0.37 0.00 0.00 3.41
3574 8465 7.813148 GCTGACTCTGTTTACTGTAATTCACTA 59.187 37.037 0.37 0.00 0.00 2.74
3575 8466 9.692749 CTGACTCTGTTTACTGTAATTCACTAA 57.307 33.333 0.37 0.00 0.00 2.24
3586 8477 8.978874 ACTGTAATTCACTAATTCATATGGCA 57.021 30.769 2.13 0.00 36.67 4.92
3587 8478 9.578576 ACTGTAATTCACTAATTCATATGGCAT 57.421 29.630 4.88 4.88 36.67 4.40
3595 8486 8.298854 TCACTAATTCATATGGCATAATGTTGC 58.701 33.333 11.86 0.00 42.01 4.17
3596 8487 8.083462 CACTAATTCATATGGCATAATGTTGCA 58.917 33.333 11.86 0.00 44.59 4.08
3597 8488 8.084073 ACTAATTCATATGGCATAATGTTGCAC 58.916 33.333 11.86 0.00 44.59 4.57
3598 8489 4.852134 TCATATGGCATAATGTTGCACC 57.148 40.909 11.86 0.00 44.59 5.01
3599 8490 3.252944 TCATATGGCATAATGTTGCACCG 59.747 43.478 11.86 0.00 44.59 4.94
3600 8491 1.761449 ATGGCATAATGTTGCACCGA 58.239 45.000 0.00 0.00 44.59 4.69
3601 8492 1.539157 TGGCATAATGTTGCACCGAA 58.461 45.000 0.00 0.00 44.59 4.30
3602 8493 1.472082 TGGCATAATGTTGCACCGAAG 59.528 47.619 0.00 0.00 44.59 3.79
3606 8497 3.611530 GCATAATGTTGCACCGAAGTTGT 60.612 43.478 0.00 0.00 42.31 3.32
3786 8685 2.103143 CGAAGCGTCGCTGGAGAT 59.897 61.111 22.50 3.87 41.08 2.75
3943 8842 7.227314 TGAATATCAAGCTCAATATGCTTCGTT 59.773 33.333 0.00 0.00 46.39 3.85
4044 8945 1.321474 CAAAGCAACTCCTGGAGCAA 58.679 50.000 23.43 0.00 32.04 3.91
4168 9069 1.128809 TCAACGAGGGCCCAAGGTAA 61.129 55.000 27.56 0.00 0.00 2.85
4174 9075 1.904378 GGGCCCAAGGTAAACGCAA 60.904 57.895 19.95 0.00 0.00 4.85
4195 9096 1.032657 AGCCTGACATAGAGCGTCGT 61.033 55.000 0.00 0.00 36.11 4.34
4416 9318 2.160013 GCGTCAAGTACTGTAAAGCACG 60.160 50.000 0.00 0.00 0.00 5.34
4420 9322 3.319972 TCAAGTACTGTAAAGCACGGACT 59.680 43.478 0.00 0.00 36.95 3.85
4468 9370 2.043450 AGAGACCCCTCCAGAGCG 60.043 66.667 0.00 0.00 40.30 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 248 3.595819 GCCAAAGCTTCGCATCCT 58.404 55.556 12.36 0.00 35.50 3.24
357 360 3.304928 GGACTTTGGAACTCGTTCTCGTA 60.305 47.826 9.41 0.00 39.45 3.43
419 422 4.651994 CATTACTTGTTGCGATCTCCAAC 58.348 43.478 15.30 15.30 42.13 3.77
469 475 0.317160 CACTCGTGGCTTCTGTACCA 59.683 55.000 0.00 0.00 0.00 3.25
601 607 1.460305 ACAGCCGATGCCCCTAGAT 60.460 57.895 0.00 0.00 38.69 1.98
614 620 2.617274 GCCGTCAAAGACCACAGCC 61.617 63.158 0.00 0.00 0.00 4.85
710 716 0.537188 AATCCGACGCAATCTCCAGT 59.463 50.000 0.00 0.00 0.00 4.00
757 763 2.359900 CATAAACTGGCGAGGCTTCTT 58.640 47.619 0.00 0.00 0.00 2.52
870 876 0.955919 GCAGCTCCTTTTGCTACCGT 60.956 55.000 0.00 0.00 38.92 4.83
1223 1253 2.489329 CCAAGTCGATTGCCTTGTTCAT 59.511 45.455 11.27 0.00 37.05 2.57
1240 1270 1.242076 GGCCATCAATCGATCCCAAG 58.758 55.000 0.00 0.00 0.00 3.61
1252 1361 0.464373 GCTCCAAGAATCGGCCATCA 60.464 55.000 2.24 0.00 0.00 3.07
1264 1373 2.494918 CGTCGGGGTAGCTCCAAG 59.505 66.667 0.00 0.00 38.11 3.61
1265 1374 3.072468 CCGTCGGGGTAGCTCCAA 61.072 66.667 2.34 0.00 38.11 3.53
1732 4049 4.010414 GCATGATGGCGAGCGAGC 62.010 66.667 0.00 0.00 0.00 5.03
1937 4263 4.416513 TGGTCTGGATATGATGAACCCATT 59.583 41.667 0.00 0.00 32.09 3.16
1983 4309 1.242076 CCATTGATTCCTCCGATGGC 58.758 55.000 0.00 0.00 31.39 4.40
1996 4322 2.115052 AAGCCACGGTGCCATTGA 59.885 55.556 1.68 0.00 0.00 2.57
2100 4438 1.644786 GGATTGAAACCCCTGTCGCG 61.645 60.000 0.00 0.00 0.00 5.87
2112 4450 1.803334 CGAACGGACCTTGGATTGAA 58.197 50.000 0.00 0.00 0.00 2.69
2126 4464 3.680072 GACGGCAATGTCGCGAACG 62.680 63.158 12.06 11.48 42.01 3.95
2182 4520 4.681978 AGCTTGTGTCGTCGGGCC 62.682 66.667 0.00 0.00 0.00 5.80
2183 4521 3.112709 GAGCTTGTGTCGTCGGGC 61.113 66.667 0.00 0.00 0.00 6.13
2212 4550 1.450312 GCCATCCAACGACAGGAGG 60.450 63.158 0.00 0.00 38.83 4.30
2216 4554 1.300971 CTGTGGCCATCCAACGACAG 61.301 60.000 9.72 4.82 45.53 3.51
2260 4625 3.717294 AATCCTTGGCCGAGGCGT 61.717 61.111 32.12 20.58 43.06 5.68
2261 4626 3.204827 CAATCCTTGGCCGAGGCG 61.205 66.667 32.12 19.26 43.06 5.52
2262 4627 2.830370 CCAATCCTTGGCCGAGGC 60.830 66.667 32.12 5.37 45.17 4.70
2368 4733 1.078848 CTGAGTGTGGGCAGGCTAC 60.079 63.158 3.14 3.14 0.00 3.58
2370 4735 4.341783 GCTGAGTGTGGGCAGGCT 62.342 66.667 0.00 0.00 32.83 4.58
2411 4776 2.859165 AGTCAATCTTGGCGAGGAAA 57.141 45.000 0.97 0.00 37.98 3.13
2627 5037 4.458295 ACTCACCAAGAAGAAGATGCATTG 59.542 41.667 0.00 0.00 0.00 2.82
2635 5045 1.699634 TCCCCACTCACCAAGAAGAAG 59.300 52.381 0.00 0.00 0.00 2.85
2679 5097 4.595781 TCCACCCTAAAACACACACTATCT 59.404 41.667 0.00 0.00 0.00 1.98
2689 5107 5.954153 TCCGTATTATCCACCCTAAAACA 57.046 39.130 0.00 0.00 0.00 2.83
2709 5127 9.837525 GCATATCATCTTATTTCTGTTGAATCC 57.162 33.333 0.00 0.00 31.56 3.01
2718 6447 9.887629 CATGACCTAGCATATCATCTTATTTCT 57.112 33.333 0.00 0.00 30.58 2.52
2781 6512 0.895559 CCTCCCAAACAAGAGGTGCC 60.896 60.000 0.00 0.00 44.01 5.01
2862 6754 1.341383 GCATCCCCAAATCACTGGACT 60.341 52.381 0.00 0.00 38.96 3.85
2894 6806 2.158667 AGTGTGGTTGTTCTGGTTAGGG 60.159 50.000 0.00 0.00 0.00 3.53
2909 6821 0.036952 ATGTCGCAGGAGAAGTGTGG 60.037 55.000 0.00 0.00 0.00 4.17
2923 6836 7.955324 CACGCCCTATAAATAAATTACATGTCG 59.045 37.037 0.00 0.00 0.00 4.35
3033 6964 7.684062 AGAAAAACTGATCGACAAACAATTG 57.316 32.000 3.24 3.24 42.46 2.32
3104 7035 5.448632 CCTGGTCGTTTATGTATTTGCTTCC 60.449 44.000 0.00 0.00 0.00 3.46
3261 8066 8.585881 GCATACATACCCTAGACTATTTTCAGA 58.414 37.037 0.00 0.00 0.00 3.27
3276 8081 2.748209 AACAAGGGGCATACATACCC 57.252 50.000 0.00 0.00 46.24 3.69
3287 8138 1.341209 GAAGACAGGCAAAACAAGGGG 59.659 52.381 0.00 0.00 0.00 4.79
3293 8144 3.253432 CAGGGTTAGAAGACAGGCAAAAC 59.747 47.826 0.00 0.00 0.00 2.43
3343 8229 0.858135 CAGAAGTACGAGACGAGCGC 60.858 60.000 0.00 0.00 0.00 5.92
3349 8236 1.534175 CGGGATGCAGAAGTACGAGAC 60.534 57.143 0.00 0.00 0.00 3.36
3354 8241 2.674796 AGTTCGGGATGCAGAAGTAC 57.325 50.000 5.67 0.00 0.00 2.73
3360 8247 3.304794 GCTAGTAGTAGTTCGGGATGCAG 60.305 52.174 6.47 0.00 0.00 4.41
3364 8251 3.488363 CCTGCTAGTAGTAGTTCGGGAT 58.512 50.000 13.45 0.00 0.00 3.85
3381 8268 2.356818 CTACTGCGCCTCTACCCTGC 62.357 65.000 4.18 0.00 0.00 4.85
3385 8272 0.179134 CACACTACTGCGCCTCTACC 60.179 60.000 4.18 0.00 0.00 3.18
3387 8274 0.965866 AGCACACTACTGCGCCTCTA 60.966 55.000 4.18 0.00 42.42 2.43
3394 8281 1.294659 GCACTGGAGCACACTACTGC 61.295 60.000 0.00 0.00 37.44 4.40
3396 8283 1.674057 GGCACTGGAGCACACTACT 59.326 57.895 0.00 0.00 35.83 2.57
3398 8285 1.127567 AAGGGCACTGGAGCACACTA 61.128 55.000 0.00 0.00 41.46 2.74
3399 8286 2.455565 AAGGGCACTGGAGCACACT 61.456 57.895 0.00 0.00 41.46 3.55
3400 8287 2.113986 AAGGGCACTGGAGCACAC 59.886 61.111 0.00 0.00 41.46 3.82
3401 8288 2.113774 CAAGGGCACTGGAGCACA 59.886 61.111 0.00 0.00 41.46 4.57
3402 8289 1.529244 AACAAGGGCACTGGAGCAC 60.529 57.895 0.00 0.00 38.51 4.40
3403 8290 1.529010 CAACAAGGGCACTGGAGCA 60.529 57.895 0.00 0.00 35.83 4.26
3404 8291 2.270986 CCAACAAGGGCACTGGAGC 61.271 63.158 0.00 0.00 0.00 4.70
3405 8292 0.468029 AACCAACAAGGGCACTGGAG 60.468 55.000 0.00 0.00 43.89 3.86
3466 8356 8.306680 TGTCTATTACACTGCTTTTACTTGAC 57.693 34.615 0.00 0.00 31.43 3.18
3485 8375 3.713248 TCCATTCATCTGCCACTGTCTAT 59.287 43.478 0.00 0.00 0.00 1.98
3487 8377 1.911357 TCCATTCATCTGCCACTGTCT 59.089 47.619 0.00 0.00 0.00 3.41
3499 8389 9.347240 CACTTCCAATTATACTTCTCCATTCAT 57.653 33.333 0.00 0.00 0.00 2.57
3506 8397 7.626452 GCCAACACACTTCCAATTATACTTCTC 60.626 40.741 0.00 0.00 0.00 2.87
3508 8399 6.151144 AGCCAACACACTTCCAATTATACTTC 59.849 38.462 0.00 0.00 0.00 3.01
3518 8409 2.435372 AAGAAGCCAACACACTTCCA 57.565 45.000 0.00 0.00 42.67 3.53
3526 8417 4.502962 CTTCCAAACAAAAGAAGCCAACA 58.497 39.130 0.00 0.00 31.41 3.33
3532 8423 5.067023 AGAGTCAGCTTCCAAACAAAAGAAG 59.933 40.000 0.00 0.00 39.99 2.85
3533 8424 4.949856 AGAGTCAGCTTCCAAACAAAAGAA 59.050 37.500 0.00 0.00 0.00 2.52
3534 8425 4.336433 CAGAGTCAGCTTCCAAACAAAAGA 59.664 41.667 0.00 0.00 0.00 2.52
3535 8426 4.096984 ACAGAGTCAGCTTCCAAACAAAAG 59.903 41.667 0.00 0.00 0.00 2.27
3536 8427 4.016444 ACAGAGTCAGCTTCCAAACAAAA 58.984 39.130 0.00 0.00 0.00 2.44
3537 8428 3.620488 ACAGAGTCAGCTTCCAAACAAA 58.380 40.909 0.00 0.00 0.00 2.83
3538 8429 3.281727 ACAGAGTCAGCTTCCAAACAA 57.718 42.857 0.00 0.00 0.00 2.83
3539 8430 3.281727 AACAGAGTCAGCTTCCAAACA 57.718 42.857 0.00 0.00 0.00 2.83
3540 8431 4.816925 AGTAAACAGAGTCAGCTTCCAAAC 59.183 41.667 0.00 0.00 0.00 2.93
3541 8432 4.816385 CAGTAAACAGAGTCAGCTTCCAAA 59.184 41.667 0.00 0.00 0.00 3.28
3542 8433 4.141711 ACAGTAAACAGAGTCAGCTTCCAA 60.142 41.667 0.00 0.00 0.00 3.53
3543 8434 3.388024 ACAGTAAACAGAGTCAGCTTCCA 59.612 43.478 0.00 0.00 0.00 3.53
3544 8435 3.996480 ACAGTAAACAGAGTCAGCTTCC 58.004 45.455 0.00 0.00 0.00 3.46
3545 8436 7.385205 TGAATTACAGTAAACAGAGTCAGCTTC 59.615 37.037 0.00 0.00 0.00 3.86
3546 8437 7.171678 GTGAATTACAGTAAACAGAGTCAGCTT 59.828 37.037 0.00 0.00 0.00 3.74
3547 8438 6.647067 GTGAATTACAGTAAACAGAGTCAGCT 59.353 38.462 0.00 0.00 0.00 4.24
3548 8439 6.647067 AGTGAATTACAGTAAACAGAGTCAGC 59.353 38.462 0.00 0.00 0.00 4.26
3549 8440 9.692749 TTAGTGAATTACAGTAAACAGAGTCAG 57.307 33.333 0.00 0.00 40.21 3.51
3561 8452 8.978874 TGCCATATGAATTAGTGAATTACAGT 57.021 30.769 3.65 0.00 35.33 3.55
3569 8460 8.298854 GCAACATTATGCCATATGAATTAGTGA 58.701 33.333 3.65 0.00 40.49 3.41
3570 8461 8.083462 TGCAACATTATGCCATATGAATTAGTG 58.917 33.333 3.65 2.65 45.83 2.74
3571 8462 8.084073 GTGCAACATTATGCCATATGAATTAGT 58.916 33.333 3.65 0.00 45.83 2.24
3572 8463 7.543172 GGTGCAACATTATGCCATATGAATTAG 59.457 37.037 3.65 0.00 45.83 1.73
3573 8464 7.377398 GGTGCAACATTATGCCATATGAATTA 58.623 34.615 3.65 0.00 45.83 1.40
3574 8465 6.225318 GGTGCAACATTATGCCATATGAATT 58.775 36.000 3.65 0.00 45.83 2.17
3575 8466 5.565242 CGGTGCAACATTATGCCATATGAAT 60.565 40.000 0.98 0.16 45.83 2.57
3576 8467 4.261530 CGGTGCAACATTATGCCATATGAA 60.262 41.667 0.98 0.00 45.83 2.57
3577 8468 3.252944 CGGTGCAACATTATGCCATATGA 59.747 43.478 0.98 0.00 45.83 2.15
3578 8469 3.252944 TCGGTGCAACATTATGCCATATG 59.747 43.478 0.98 0.00 45.83 1.78
3579 8470 3.485394 TCGGTGCAACATTATGCCATAT 58.515 40.909 0.98 0.00 45.83 1.78
3580 8471 2.924421 TCGGTGCAACATTATGCCATA 58.076 42.857 0.98 0.00 45.83 2.74
3581 8472 1.761449 TCGGTGCAACATTATGCCAT 58.239 45.000 0.98 0.00 45.83 4.40
3582 8473 1.472082 CTTCGGTGCAACATTATGCCA 59.528 47.619 0.98 0.00 45.83 4.92
3583 8474 1.472480 ACTTCGGTGCAACATTATGCC 59.528 47.619 0.98 0.00 45.83 4.40
3584 8475 2.916716 CAACTTCGGTGCAACATTATGC 59.083 45.455 0.98 0.00 46.58 3.14
3585 8476 4.159377 ACAACTTCGGTGCAACATTATG 57.841 40.909 0.98 0.00 39.98 1.90
3586 8477 6.072175 ACAATACAACTTCGGTGCAACATTAT 60.072 34.615 0.98 0.00 39.98 1.28
3587 8478 5.239744 ACAATACAACTTCGGTGCAACATTA 59.760 36.000 0.98 0.00 39.98 1.90
3588 8479 4.037446 ACAATACAACTTCGGTGCAACATT 59.963 37.500 0.98 0.00 39.98 2.71
3589 8480 3.568007 ACAATACAACTTCGGTGCAACAT 59.432 39.130 0.98 0.00 39.98 2.71
3590 8481 2.946329 ACAATACAACTTCGGTGCAACA 59.054 40.909 0.98 0.00 39.98 3.33
3591 8482 3.619233 ACAATACAACTTCGGTGCAAC 57.381 42.857 0.00 0.00 0.00 4.17
3592 8483 4.449743 GTCTACAATACAACTTCGGTGCAA 59.550 41.667 0.00 0.00 0.00 4.08
3593 8484 3.991773 GTCTACAATACAACTTCGGTGCA 59.008 43.478 0.00 0.00 0.00 4.57
3594 8485 3.991773 TGTCTACAATACAACTTCGGTGC 59.008 43.478 0.00 0.00 0.00 5.01
3595 8486 5.466819 TCTGTCTACAATACAACTTCGGTG 58.533 41.667 0.00 0.00 0.00 4.94
3596 8487 5.717078 TCTGTCTACAATACAACTTCGGT 57.283 39.130 0.00 0.00 0.00 4.69
3597 8488 8.873215 ATTATCTGTCTACAATACAACTTCGG 57.127 34.615 0.00 0.00 0.00 4.30
3601 8492 9.448438 TGCAAATTATCTGTCTACAATACAACT 57.552 29.630 0.00 0.00 0.00 3.16
3786 8685 2.818432 GAGTTTCGGTCCAGTCTCTGTA 59.182 50.000 0.00 0.00 0.00 2.74
3903 8802 1.570813 TATTCACTTCATGCGCGAGG 58.429 50.000 12.10 0.00 0.00 4.63
3912 8811 7.718314 AGCATATTGAGCTTGATATTCACTTCA 59.282 33.333 0.00 0.00 39.87 3.02
3943 8842 2.261361 CCAGTGCACCATCGACGA 59.739 61.111 14.63 0.00 0.00 4.20
4044 8945 2.164624 GAGTGCTCTTGGATACGTCAGT 59.835 50.000 0.00 0.00 42.51 3.41
4168 9069 3.722147 CTCTATGTCAGGCTATTGCGTT 58.278 45.455 0.00 0.00 40.82 4.84
4174 9075 1.537638 CGACGCTCTATGTCAGGCTAT 59.462 52.381 0.00 0.00 36.11 2.97
4339 9240 2.588989 TGCCTCCATATGCACGCA 59.411 55.556 0.00 0.00 31.31 5.24
4445 9347 0.900647 CTGGAGGGGTCTCTCGTGTT 60.901 60.000 0.00 0.00 39.86 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.