Multiple sequence alignment - TraesCS4B01G011400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G011400 chr4B 100.000 6116 0 0 1 6116 7397600 7403715 0.000000e+00 11295.0
1 TraesCS4B01G011400 chr4B 100.000 2880 0 0 6410 9289 7404009 7406888 0.000000e+00 5319.0
2 TraesCS4B01G011400 chr4B 99.772 879 2 0 8411 9289 7414541 7415419 0.000000e+00 1613.0
3 TraesCS4B01G011400 chr4B 98.256 688 8 2 3 690 7860831 7860148 0.000000e+00 1201.0
4 TraesCS4B01G011400 chr4B 73.171 984 176 47 5001 5947 7463468 7464400 3.300000e-69 274.0
5 TraesCS4B01G011400 chr4B 73.171 984 176 47 5001 5947 7477306 7478238 3.300000e-69 274.0
6 TraesCS4B01G011400 chr4B 77.950 322 39 12 5054 5354 7030040 7029730 1.240000e-38 172.0
7 TraesCS4B01G011400 chr4B 81.633 147 23 4 1627 1769 21149461 21149607 1.640000e-22 119.0
8 TraesCS4B01G011400 chr4B 85.938 64 8 1 6714 6776 7030058 7029995 6.020000e-07 67.6
9 TraesCS4B01G011400 chr4A 91.426 2006 135 17 6410 8411 598793578 598791606 0.000000e+00 2717.0
10 TraesCS4B01G011400 chr4A 91.944 993 70 3 2565 3552 598800334 598799347 0.000000e+00 1382.0
11 TraesCS4B01G011400 chr4A 87.283 1093 76 17 4346 5414 598795321 598794268 0.000000e+00 1190.0
12 TraesCS4B01G011400 chr4A 90.208 674 43 9 741 1405 598805801 598805142 0.000000e+00 857.0
13 TraesCS4B01G011400 chr4A 88.501 687 50 3 5431 6116 598794280 598793622 0.000000e+00 804.0
14 TraesCS4B01G011400 chr4A 87.218 532 61 4 3961 4492 598861480 598860956 4.800000e-167 599.0
15 TraesCS4B01G011400 chr4A 93.158 380 22 3 3900 4278 598795699 598795323 1.050000e-153 555.0
16 TraesCS4B01G011400 chr4A 82.003 639 61 27 1424 2038 598801480 598800872 2.330000e-135 494.0
17 TraesCS4B01G011400 chr4A 91.765 340 26 2 3550 3887 598797953 598797614 1.090000e-128 472.0
18 TraesCS4B01G011400 chr4A 90.514 253 22 2 284 536 598806144 598805894 5.380000e-87 333.0
19 TraesCS4B01G011400 chr4A 94.340 106 5 1 147 251 598806242 598806137 2.680000e-35 161.0
20 TraesCS4B01G011400 chr4D 91.934 1810 136 7 6604 8411 4477244 4479045 0.000000e+00 2525.0
21 TraesCS4B01G011400 chr4D 87.363 1638 108 31 4480 6116 4475313 4476852 0.000000e+00 1786.0
22 TraesCS4B01G011400 chr4D 84.819 1436 118 42 632 2040 4471659 4473021 0.000000e+00 1352.0
23 TraesCS4B01G011400 chr4D 89.177 1081 78 10 2565 3640 4473527 4474573 0.000000e+00 1312.0
24 TraesCS4B01G011400 chr4D 90.657 578 31 8 3702 4278 4474591 4475146 0.000000e+00 747.0
25 TraesCS4B01G011400 chr4D 88.917 397 29 8 144 532 4471222 4471611 8.440000e-130 475.0
26 TraesCS4B01G011400 chr4D 90.881 318 18 5 2255 2566 4473172 4473484 5.190000e-112 416.0
27 TraesCS4B01G011400 chr4D 73.375 646 139 20 7243 7864 4208844 4209480 9.450000e-50 209.0
28 TraesCS4B01G011400 chr4D 93.827 81 5 0 6410 6490 4477128 4477208 1.270000e-23 122.0
29 TraesCS4B01G011400 chr4D 81.507 146 24 3 1627 1769 11114045 11114190 5.890000e-22 117.0
30 TraesCS4B01G011400 chr4D 81.507 146 24 3 1627 1769 11130659 11130804 5.890000e-22 117.0
31 TraesCS4B01G011400 chr4D 90.323 62 6 0 4431 4492 4422666 4422727 2.150000e-11 82.4
32 TraesCS4B01G011400 chr4D 80.000 115 13 8 6668 6776 4345800 4345690 1.000000e-09 76.8
33 TraesCS4B01G011400 chr4D 83.333 72 9 2 6703 6772 4518783 4518853 7.790000e-06 63.9
34 TraesCS4B01G011400 chr7B 98.862 879 10 0 8411 9289 341334981 341334103 0.000000e+00 1568.0
35 TraesCS4B01G011400 chr7B 98.862 879 9 1 8411 9289 270407670 270408547 0.000000e+00 1567.0
36 TraesCS4B01G011400 chrUn 98.646 886 9 3 8406 9289 66953988 66954872 0.000000e+00 1567.0
37 TraesCS4B01G011400 chrUn 98.638 881 9 3 8411 9289 66962979 66963858 0.000000e+00 1557.0
38 TraesCS4B01G011400 chrUn 98.636 880 10 2 8411 9289 277724398 277723520 0.000000e+00 1557.0
39 TraesCS4B01G011400 chr1B 98.862 879 8 2 8412 9289 397675684 397676561 0.000000e+00 1567.0
40 TraesCS4B01G011400 chr1B 98.635 879 10 2 8412 9289 288429580 288428703 0.000000e+00 1555.0
41 TraesCS4B01G011400 chr1B 78.704 108 19 3 6703 6808 46226301 46226406 1.670000e-07 69.4
42 TraesCS4B01G011400 chr5A 98.636 880 10 2 8410 9288 211074791 211073913 0.000000e+00 1557.0
43 TraesCS4B01G011400 chr7A 78.926 1006 179 27 2645 3633 12696029 12697018 0.000000e+00 652.0
44 TraesCS4B01G011400 chr7A 76.882 372 57 19 1823 2171 12695380 12695745 5.730000e-42 183.0
45 TraesCS4B01G011400 chr7A 83.838 99 13 3 53 150 478508898 478508994 3.570000e-14 91.6
46 TraesCS4B01G011400 chr7A 84.810 79 11 1 72 150 183384204 183384127 2.780000e-10 78.7
47 TraesCS4B01G011400 chr2B 82.799 593 63 21 3046 3625 580009903 580009337 2.330000e-135 494.0
48 TraesCS4B01G011400 chr2B 92.500 40 3 0 3 42 663374070 663374031 3.620000e-04 58.4
49 TraesCS4B01G011400 chr5D 86.486 111 15 0 1659 1769 467856858 467856748 1.270000e-23 122.0
50 TraesCS4B01G011400 chr5D 80.000 100 20 0 51 150 288324358 288324457 3.600000e-09 75.0
51 TraesCS4B01G011400 chr5B 84.466 103 13 1 51 150 578073449 578073551 2.130000e-16 99.0
52 TraesCS4B01G011400 chr5B 96.875 32 1 0 15 46 539932474 539932443 5.000000e-03 54.7
53 TraesCS4B01G011400 chr3D 83.168 101 16 1 51 150 556642755 556642655 3.570000e-14 91.6
54 TraesCS4B01G011400 chr3D 82.105 95 15 2 60 154 419094513 419094605 7.730000e-11 80.5
55 TraesCS4B01G011400 chr7D 82.524 103 14 4 51 151 365393789 365393689 4.620000e-13 87.9
56 TraesCS4B01G011400 chr7D 80.769 104 16 2 57 157 254893944 254893842 2.780000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G011400 chr4B 7397600 7406888 9288 False 8307.000 11295 100.000000 1 9289 2 chr4B.!!$F5 9288
1 TraesCS4B01G011400 chr4B 7414541 7415419 878 False 1613.000 1613 99.772000 8411 9289 1 chr4B.!!$F1 878
2 TraesCS4B01G011400 chr4B 7860148 7860831 683 True 1201.000 1201 98.256000 3 690 1 chr4B.!!$R1 687
3 TraesCS4B01G011400 chr4B 7463468 7464400 932 False 274.000 274 73.171000 5001 5947 1 chr4B.!!$F2 946
4 TraesCS4B01G011400 chr4B 7477306 7478238 932 False 274.000 274 73.171000 5001 5947 1 chr4B.!!$F3 946
5 TraesCS4B01G011400 chr4A 598791606 598806242 14636 True 896.500 2717 90.114200 147 8411 10 chr4A.!!$R2 8264
6 TraesCS4B01G011400 chr4A 598860956 598861480 524 True 599.000 599 87.218000 3961 4492 1 chr4A.!!$R1 531
7 TraesCS4B01G011400 chr4D 4471222 4479045 7823 False 1091.875 2525 89.696875 144 8411 8 chr4D.!!$F6 8267
8 TraesCS4B01G011400 chr4D 4208844 4209480 636 False 209.000 209 73.375000 7243 7864 1 chr4D.!!$F1 621
9 TraesCS4B01G011400 chr7B 341334103 341334981 878 True 1568.000 1568 98.862000 8411 9289 1 chr7B.!!$R1 878
10 TraesCS4B01G011400 chr7B 270407670 270408547 877 False 1567.000 1567 98.862000 8411 9289 1 chr7B.!!$F1 878
11 TraesCS4B01G011400 chrUn 66953988 66954872 884 False 1567.000 1567 98.646000 8406 9289 1 chrUn.!!$F1 883
12 TraesCS4B01G011400 chrUn 66962979 66963858 879 False 1557.000 1557 98.638000 8411 9289 1 chrUn.!!$F2 878
13 TraesCS4B01G011400 chrUn 277723520 277724398 878 True 1557.000 1557 98.636000 8411 9289 1 chrUn.!!$R1 878
14 TraesCS4B01G011400 chr1B 397675684 397676561 877 False 1567.000 1567 98.862000 8412 9289 1 chr1B.!!$F2 877
15 TraesCS4B01G011400 chr1B 288428703 288429580 877 True 1555.000 1555 98.635000 8412 9289 1 chr1B.!!$R1 877
16 TraesCS4B01G011400 chr5A 211073913 211074791 878 True 1557.000 1557 98.636000 8410 9288 1 chr5A.!!$R1 878
17 TraesCS4B01G011400 chr7A 12695380 12697018 1638 False 417.500 652 77.904000 1823 3633 2 chr7A.!!$F2 1810
18 TraesCS4B01G011400 chr2B 580009337 580009903 566 True 494.000 494 82.799000 3046 3625 1 chr2B.!!$R1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 727 0.381089 CCGTCTACAGACCATCGTCC 59.619 60.0 3.84 0.00 41.86 4.79 F
1034 1050 0.179000 ATCAGGGCCGAGATCAACAC 59.821 55.0 8.47 0.00 0.00 3.32 F
1635 5321 0.115745 ATGGGTACGGGGATACGGAT 59.884 55.0 0.00 0.00 38.39 4.18 F
2081 5826 0.672342 GATGATGATGGCTGCCCAAC 59.328 55.0 17.53 7.22 46.14 3.77 F
2406 6200 0.817229 TCATTGTTGCCGCTGACACA 60.817 50.0 0.00 0.00 0.00 3.72 F
4103 11269 0.977395 ACCAGCACCTGTAGTCTTCC 59.023 55.0 0.00 0.00 0.00 3.46 F
4999 12196 0.183492 TCCCTGCAACATAGATGGGC 59.817 55.0 0.00 0.00 34.89 5.36 F
5037 12234 0.797249 GCGCTGTGGTGTAGTCGTAG 60.797 60.0 0.00 0.00 0.00 3.51 F
6504 13707 0.038435 TGTTTTGCGATGCCATGTGG 60.038 50.0 0.00 0.00 38.53 4.17 F
6963 14166 0.037697 TGGCTTGTATCGTTCGTGCT 60.038 50.0 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 5194 0.114364 GGACAACATGGAAAGGGGGT 59.886 55.000 0.00 0.00 0.00 4.95 R
2747 6589 0.687920 TGATAAGGACAACCGGCACA 59.312 50.000 0.00 0.00 41.83 4.57 R
2772 6614 1.961793 TCCTTCACTGAACCCGTTTG 58.038 50.000 0.00 0.00 0.00 2.93 R
3754 9017 1.724623 CAAGCATGCTGATTGTGTTGC 59.275 47.619 23.48 0.00 38.79 4.17 R
4242 11408 1.423584 TGGGACTGCCGATGATACAT 58.576 50.000 0.00 0.00 33.83 2.29 R
6034 13237 0.257039 GGCTGGTCCCTGTGAATCAT 59.743 55.000 0.00 0.00 0.00 2.45 R
6058 13261 1.185618 TCCACCCTGTCGAAGTCCAG 61.186 60.000 0.00 0.00 0.00 3.86 R
6939 14142 1.267532 CGAACGATACAAGCCACATGC 60.268 52.381 0.00 0.00 41.71 4.06 R
7604 14838 0.700564 AATGAAGGCCTGGAGCTCAA 59.299 50.000 17.19 2.44 43.05 3.02 R
8399 15650 1.066303 GGCGTCACAATGTGTTTCCAA 59.934 47.619 13.55 0.00 34.79 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 1.009829 CGATTTTCAGGCCTTCTCGG 58.990 55.000 0.00 0.00 0.00 4.63
249 253 3.860125 GCGTGCGTGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
250 254 2.021243 CGTGCGTGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
251 255 2.277247 GTGCGTGTGTGTGTGTGC 60.277 61.111 0.00 0.00 0.00 4.57
252 256 3.858989 TGCGTGTGTGTGTGTGCG 61.859 61.111 0.00 0.00 0.00 5.34
253 257 3.860125 GCGTGTGTGTGTGTGCGT 61.860 61.111 0.00 0.00 0.00 5.24
700 710 2.436646 AATTGACAGCTCGGCCCG 60.437 61.111 0.00 0.00 0.00 6.13
702 712 3.665675 ATTGACAGCTCGGCCCGTC 62.666 63.158 1.63 0.00 33.76 4.79
717 727 0.381089 CCGTCTACAGACCATCGTCC 59.619 60.000 3.84 0.00 41.86 4.79
722 732 2.105306 TCTACAGACCATCGTCCGGATA 59.895 50.000 7.81 0.00 40.12 2.59
734 744 0.822532 TCCGGATAGACGCTCCCTTC 60.823 60.000 0.00 0.00 0.00 3.46
737 747 0.822532 GGATAGACGCTCCCTTCCGA 60.823 60.000 0.00 0.00 0.00 4.55
747 757 2.032071 CCTTCCGAGCACCCGTTT 59.968 61.111 0.00 0.00 0.00 3.60
781 796 2.203788 AGGCTGAGAACCCGGACA 60.204 61.111 0.73 0.00 0.00 4.02
869 885 2.556287 CAAACGCCTCCGCAAGAC 59.444 61.111 0.00 0.00 43.02 3.01
948 964 0.394762 CAGCAGCTAATTCCCCAGCA 60.395 55.000 0.00 0.00 40.36 4.41
954 970 2.869503 CTAATTCCCCAGCACGCCGT 62.870 60.000 0.00 0.00 0.00 5.68
1033 1049 0.465705 GATCAGGGCCGAGATCAACA 59.534 55.000 26.73 0.00 40.23 3.33
1034 1050 0.179000 ATCAGGGCCGAGATCAACAC 59.821 55.000 8.47 0.00 0.00 3.32
1065 1081 1.006102 CAAGTTCGCCGAGGTGAGT 60.006 57.895 5.48 0.00 35.94 3.41
1075 1091 1.081277 GAGGTGAGTCCCCTCCCTT 59.919 63.158 10.40 0.00 42.29 3.95
1077 1097 1.229529 GGTGAGTCCCCTCCCTTCA 60.230 63.158 0.00 0.00 36.86 3.02
1091 1111 1.745087 CCCTTCAATCAACGTCCCATG 59.255 52.381 0.00 0.00 0.00 3.66
1112 1132 3.091190 ACCCCGTGTGGTTGTGGA 61.091 61.111 0.00 0.00 33.91 4.02
1125 1145 0.321564 TTGTGGACTGGAATCGCTGG 60.322 55.000 0.00 0.00 0.00 4.85
1127 1147 1.612146 TGGACTGGAATCGCTGGGA 60.612 57.895 0.00 0.00 0.00 4.37
1130 1150 1.408822 GGACTGGAATCGCTGGGAATT 60.409 52.381 0.00 0.00 0.00 2.17
1132 1152 3.541632 GACTGGAATCGCTGGGAATTAA 58.458 45.455 0.00 0.00 0.00 1.40
1133 1153 4.137543 GACTGGAATCGCTGGGAATTAAT 58.862 43.478 0.00 0.00 0.00 1.40
1134 1154 4.536765 ACTGGAATCGCTGGGAATTAATT 58.463 39.130 0.00 0.00 0.00 1.40
1135 1155 4.339247 ACTGGAATCGCTGGGAATTAATTG 59.661 41.667 5.17 0.00 0.00 2.32
1175 1195 4.162690 GGCCGGCTACCTGACCTG 62.163 72.222 28.56 0.00 0.00 4.00
1176 1196 3.075005 GCCGGCTACCTGACCTGA 61.075 66.667 22.15 0.00 0.00 3.86
1177 1197 2.893398 CCGGCTACCTGACCTGAC 59.107 66.667 0.00 0.00 0.00 3.51
1178 1198 2.722201 CCGGCTACCTGACCTGACC 61.722 68.421 0.00 0.00 0.00 4.02
1179 1199 1.682684 CGGCTACCTGACCTGACCT 60.683 63.158 0.00 0.00 0.00 3.85
1180 1200 1.901085 GGCTACCTGACCTGACCTG 59.099 63.158 0.00 0.00 0.00 4.00
1181 1201 0.614979 GGCTACCTGACCTGACCTGA 60.615 60.000 0.00 0.00 0.00 3.86
1182 1202 0.533032 GCTACCTGACCTGACCTGAC 59.467 60.000 0.00 0.00 0.00 3.51
1183 1203 1.187087 CTACCTGACCTGACCTGACC 58.813 60.000 0.00 0.00 0.00 4.02
1184 1204 0.485543 TACCTGACCTGACCTGACCA 59.514 55.000 0.00 0.00 0.00 4.02
1256 1276 1.820519 TGTACGTGATGTGGAGGTACC 59.179 52.381 2.73 2.73 34.99 3.34
1257 1277 1.097232 TACGTGATGTGGAGGTACCG 58.903 55.000 6.18 0.00 42.61 4.02
1274 1294 1.887707 CGGAAGATACGCAAGGGCC 60.888 63.158 0.00 0.00 46.39 5.80
1291 1311 1.890894 CCTGGTCGTCGAGGTCATT 59.109 57.895 4.85 0.00 35.30 2.57
1299 1319 1.466866 CGTCGAGGTCATTGAACGCTA 60.467 52.381 3.92 0.00 0.00 4.26
1306 1326 2.000447 GTCATTGAACGCTACCTCCAC 59.000 52.381 0.00 0.00 0.00 4.02
1312 1332 4.849329 CGCTACCTCCACGACGCC 62.849 72.222 0.00 0.00 0.00 5.68
1365 1385 2.766229 GGCACCCCTCTCCCTCTC 60.766 72.222 0.00 0.00 0.00 3.20
1368 1388 1.755008 CACCCCTCTCCCTCTCGTC 60.755 68.421 0.00 0.00 0.00 4.20
1390 1414 1.130749 CGTCATTCTCGTCTCTTCGGT 59.869 52.381 0.00 0.00 0.00 4.69
1422 1446 3.987547 TCTTGTCTGTTTCTCTGCTCTG 58.012 45.455 0.00 0.00 0.00 3.35
1478 5145 3.467226 GTGGAGGGGATCGCGGAA 61.467 66.667 6.13 0.00 0.00 4.30
1479 5146 2.685743 TGGAGGGGATCGCGGAAA 60.686 61.111 6.13 0.00 0.00 3.13
1520 5187 1.135915 AGCAGGTGATGATGACGAGAC 59.864 52.381 0.00 0.00 0.00 3.36
1522 5189 2.675032 GCAGGTGATGATGACGAGACAA 60.675 50.000 0.00 0.00 0.00 3.18
1524 5191 4.186926 CAGGTGATGATGACGAGACAAAT 58.813 43.478 0.00 0.00 0.00 2.32
1525 5192 4.633126 CAGGTGATGATGACGAGACAAATT 59.367 41.667 0.00 0.00 0.00 1.82
1526 5193 5.812127 CAGGTGATGATGACGAGACAAATTA 59.188 40.000 0.00 0.00 0.00 1.40
1527 5194 6.313658 CAGGTGATGATGACGAGACAAATTAA 59.686 38.462 0.00 0.00 0.00 1.40
1540 5207 4.777366 AGACAAATTAACCCCCTTTCCATG 59.223 41.667 0.00 0.00 0.00 3.66
1595 5262 2.048444 ATCTCCGCTGCATCAATGTT 57.952 45.000 0.00 0.00 0.00 2.71
1603 5270 3.671164 CGCTGCATCAATGTTGACATTCA 60.671 43.478 6.39 0.00 44.10 2.57
1607 5274 6.275494 TGCATCAATGTTGACATTCAGATT 57.725 33.333 6.39 0.00 44.10 2.40
1634 5320 0.828762 CATGGGTACGGGGATACGGA 60.829 60.000 0.00 0.00 38.39 4.69
1635 5321 0.115745 ATGGGTACGGGGATACGGAT 59.884 55.000 0.00 0.00 38.39 4.18
1638 5324 1.177401 GGTACGGGGATACGGATACC 58.823 60.000 0.00 0.00 38.39 2.73
1668 5355 6.250527 CGGCATTTTCTAAAAATGGACTTACG 59.749 38.462 20.66 6.47 37.92 3.18
1675 5362 6.585416 TCTAAAAATGGACTTACGGGGATAC 58.415 40.000 0.00 0.00 0.00 2.24
1677 5364 2.369983 ATGGACTTACGGGGATACGA 57.630 50.000 0.00 0.00 37.61 3.43
1679 5366 1.340893 TGGACTTACGGGGATACGACA 60.341 52.381 0.00 0.00 37.61 4.35
1701 5388 7.201274 CGACAAGTATATGCGTAGATGATGAAC 60.201 40.741 0.00 0.00 0.00 3.18
1729 5416 5.789643 AGTTCAATGGTGCATTACAAACT 57.210 34.783 0.00 0.00 32.35 2.66
1788 5487 2.170166 CCAAGTTGAATGCCAAGGCTA 58.830 47.619 12.96 0.00 42.51 3.93
1800 5499 2.226674 GCCAAGGCTACAAACTTCAGAC 59.773 50.000 3.29 0.00 38.26 3.51
1801 5500 3.476552 CCAAGGCTACAAACTTCAGACA 58.523 45.455 0.00 0.00 0.00 3.41
1815 5514 7.962995 AACTTCAGACACTTCATCTCCTATA 57.037 36.000 0.00 0.00 0.00 1.31
1816 5515 8.546083 AACTTCAGACACTTCATCTCCTATAT 57.454 34.615 0.00 0.00 0.00 0.86
1817 5516 9.647918 AACTTCAGACACTTCATCTCCTATATA 57.352 33.333 0.00 0.00 0.00 0.86
1818 5517 9.821240 ACTTCAGACACTTCATCTCCTATATAT 57.179 33.333 0.00 0.00 0.00 0.86
1820 5519 9.813826 TTCAGACACTTCATCTCCTATATATCA 57.186 33.333 0.00 0.00 0.00 2.15
1821 5520 9.987726 TCAGACACTTCATCTCCTATATATCAT 57.012 33.333 0.00 0.00 0.00 2.45
1844 5543 1.131883 CTCTTGCTCAAATTCGGGCTG 59.868 52.381 0.00 0.00 0.00 4.85
1849 5551 1.332997 GCTCAAATTCGGGCTGATCAG 59.667 52.381 18.84 18.84 0.00 2.90
1861 5563 1.407851 GCTGATCAGGTGCCAGATCAA 60.408 52.381 23.89 10.00 44.40 2.57
1871 5573 2.622942 GTGCCAGATCAACACCTTCAAA 59.377 45.455 0.00 0.00 0.00 2.69
1874 5576 4.458989 TGCCAGATCAACACCTTCAAATAC 59.541 41.667 0.00 0.00 0.00 1.89
1876 5578 4.935205 CCAGATCAACACCTTCAAATACGA 59.065 41.667 0.00 0.00 0.00 3.43
1883 5585 4.193090 ACACCTTCAAATACGACAACACA 58.807 39.130 0.00 0.00 0.00 3.72
1884 5586 4.272504 ACACCTTCAAATACGACAACACAG 59.727 41.667 0.00 0.00 0.00 3.66
1885 5587 3.250040 ACCTTCAAATACGACAACACAGC 59.750 43.478 0.00 0.00 0.00 4.40
1886 5588 3.469629 CTTCAAATACGACAACACAGCG 58.530 45.455 0.00 0.00 0.00 5.18
1888 5590 3.124560 TCAAATACGACAACACAGCGAA 58.875 40.909 0.00 0.00 0.00 4.70
1889 5591 3.556365 TCAAATACGACAACACAGCGAAA 59.444 39.130 0.00 0.00 0.00 3.46
1890 5592 4.212425 TCAAATACGACAACACAGCGAAAT 59.788 37.500 0.00 0.00 0.00 2.17
1891 5593 4.742438 AATACGACAACACAGCGAAATT 57.258 36.364 0.00 0.00 0.00 1.82
1897 5599 4.537015 GACAACACAGCGAAATTAAGCTT 58.463 39.130 3.48 3.48 42.52 3.74
1960 5662 5.819901 CCCACTCTCATAATCTTTGGACTTC 59.180 44.000 0.00 0.00 0.00 3.01
1964 5666 7.279758 CACTCTCATAATCTTTGGACTTCCTTC 59.720 40.741 0.00 0.00 36.82 3.46
1966 5668 7.689299 TCTCATAATCTTTGGACTTCCTTCAA 58.311 34.615 0.00 0.00 36.82 2.69
1974 5676 5.623956 TTGGACTTCCTTCAAAGTAGACA 57.376 39.130 0.00 0.00 39.55 3.41
1975 5677 5.825593 TGGACTTCCTTCAAAGTAGACAT 57.174 39.130 0.00 0.00 39.55 3.06
1996 5698 9.019656 AGACATAAGTTATTGTGCATAAAACCA 57.980 29.630 0.00 0.00 31.12 3.67
2015 5718 3.070018 CCAAATTCTCAGCTCGTTCAGT 58.930 45.455 0.00 0.00 0.00 3.41
2021 5724 2.229062 TCTCAGCTCGTTCAGTAACCAG 59.771 50.000 0.00 0.00 31.46 4.00
2081 5826 0.672342 GATGATGATGGCTGCCCAAC 59.328 55.000 17.53 7.22 46.14 3.77
2107 5891 6.612306 AGCTTCAAGGCTAAATCTTTTAACG 58.388 36.000 0.00 0.00 41.16 3.18
2109 5893 5.305139 TCAAGGCTAAATCTTTTAACGCC 57.695 39.130 0.00 0.00 36.36 5.68
2156 5940 5.005094 CCACCATTGCTTTGGATCAAAATT 58.995 37.500 11.80 0.00 39.25 1.82
2163 5947 6.199937 TGCTTTGGATCAAAATTAGCTCTC 57.800 37.500 6.56 0.00 32.75 3.20
2166 5950 6.318396 GCTTTGGATCAAAATTAGCTCTCTCT 59.682 38.462 0.00 0.00 32.75 3.10
2167 5951 7.467131 GCTTTGGATCAAAATTAGCTCTCTCTC 60.467 40.741 0.00 0.00 32.75 3.20
2168 5952 6.805016 TGGATCAAAATTAGCTCTCTCTCT 57.195 37.500 0.00 0.00 0.00 3.10
2169 5953 6.815089 TGGATCAAAATTAGCTCTCTCTCTC 58.185 40.000 0.00 0.00 0.00 3.20
2170 5954 6.610830 TGGATCAAAATTAGCTCTCTCTCTCT 59.389 38.462 0.00 0.00 0.00 3.10
2171 5955 7.147976 GGATCAAAATTAGCTCTCTCTCTCTC 58.852 42.308 0.00 0.00 0.00 3.20
2172 5956 7.014615 GGATCAAAATTAGCTCTCTCTCTCTCT 59.985 40.741 0.00 0.00 0.00 3.10
2173 5957 7.333528 TCAAAATTAGCTCTCTCTCTCTCTC 57.666 40.000 0.00 0.00 0.00 3.20
2174 5958 7.118723 TCAAAATTAGCTCTCTCTCTCTCTCT 58.881 38.462 0.00 0.00 0.00 3.10
2175 5959 7.283127 TCAAAATTAGCTCTCTCTCTCTCTCTC 59.717 40.741 0.00 0.00 0.00 3.20
2176 5960 6.506538 AATTAGCTCTCTCTCTCTCTCTCT 57.493 41.667 0.00 0.00 0.00 3.10
2177 5961 5.537300 TTAGCTCTCTCTCTCTCTCTCTC 57.463 47.826 0.00 0.00 0.00 3.20
2178 5962 3.652055 AGCTCTCTCTCTCTCTCTCTCT 58.348 50.000 0.00 0.00 0.00 3.10
2179 5963 3.640967 AGCTCTCTCTCTCTCTCTCTCTC 59.359 52.174 0.00 0.00 0.00 3.20
2180 5964 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
2181 5965 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
2182 5966 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2183 5967 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2184 5968 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2185 5969 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2186 5970 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2187 5971 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2188 5972 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2189 5973 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2190 5974 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2191 5975 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2192 5976 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2193 5977 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2194 5978 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2195 5979 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
2196 5980 6.857848 TCTCTCTCTCTCTCTCTCTCTCTAT 58.142 44.000 0.00 0.00 0.00 1.98
2197 5981 7.990055 TCTCTCTCTCTCTCTCTCTCTCTATA 58.010 42.308 0.00 0.00 0.00 1.31
2198 5982 8.619281 TCTCTCTCTCTCTCTCTCTCTCTATAT 58.381 40.741 0.00 0.00 0.00 0.86
2199 5983 9.913310 CTCTCTCTCTCTCTCTCTCTCTATATA 57.087 40.741 0.00 0.00 0.00 0.86
2295 6080 8.265055 TGGATCTTCGAAGGTATTCATAAAAGT 58.735 33.333 24.37 0.00 34.94 2.66
2327 6113 5.043248 AGCAAATTGTTTCTTCACTTTCCG 58.957 37.500 0.00 0.00 0.00 4.30
2335 6121 2.416747 TCTTCACTTTCCGCATGTCAG 58.583 47.619 0.00 0.00 0.00 3.51
2394 6188 5.940192 TCTGTAATTTCAGCGTCATTGTT 57.060 34.783 7.18 0.00 35.63 2.83
2406 6200 0.817229 TCATTGTTGCCGCTGACACA 60.817 50.000 0.00 0.00 0.00 3.72
2419 6213 2.917933 CTGACACAACCAGGAACTTCA 58.082 47.619 0.00 0.00 34.60 3.02
2457 6255 5.937111 AGTGTAATACTTTGGGTTCACAGT 58.063 37.500 0.00 0.00 35.67 3.55
2462 6260 2.365582 ACTTTGGGTTCACAGTGTGTC 58.634 47.619 22.29 15.80 33.14 3.67
2517 6315 5.240623 TCCAGCGAACTGTCAAAATGTTATT 59.759 36.000 0.00 0.00 42.81 1.40
2679 6521 1.523758 CTTTCTTTCACCCGGACAGG 58.476 55.000 0.73 0.00 40.63 4.00
2704 6546 5.241662 AGCAACTTTCACCTTCTCTATCAC 58.758 41.667 0.00 0.00 0.00 3.06
2720 6562 1.029681 TCACGGTGTCCCATATCTCG 58.970 55.000 8.17 0.00 0.00 4.04
2772 6614 1.594331 GGTTGTCCTTATCATCGGGC 58.406 55.000 0.00 0.00 0.00 6.13
2776 6618 2.639065 TGTCCTTATCATCGGGCAAAC 58.361 47.619 0.00 0.00 30.73 2.93
2791 6633 1.961793 CAAACGGGTTCAGTGAAGGA 58.038 50.000 5.62 0.00 0.00 3.36
2860 6703 3.543680 TTCACGGATGATCCTTTCTCC 57.456 47.619 10.18 0.00 33.85 3.71
2905 6748 7.814264 ATTCCACTCATCAGAAATAACCATC 57.186 36.000 0.00 0.00 0.00 3.51
2907 6750 6.586344 TCCACTCATCAGAAATAACCATCTC 58.414 40.000 0.00 0.00 0.00 2.75
2908 6751 6.156775 TCCACTCATCAGAAATAACCATCTCA 59.843 38.462 0.00 0.00 0.00 3.27
2981 6824 4.300803 TGCAAATGTTGTCTCTGCAATTC 58.699 39.130 0.00 0.00 39.91 2.17
3011 6854 1.337703 TGTGCTTCCTGAACACATTGC 59.662 47.619 9.63 0.00 39.29 3.56
3042 6885 5.695851 AACCTCATGTTGTGATTCAAGAC 57.304 39.130 0.00 0.00 36.66 3.01
3043 6886 4.074970 ACCTCATGTTGTGATTCAAGACC 58.925 43.478 0.00 0.00 36.66 3.85
3052 6895 6.760770 TGTTGTGATTCAAGACCCAATTTTTC 59.239 34.615 0.00 0.00 36.66 2.29
3153 6996 7.611467 ACATATGTCCTTCATTACAAGCTTGAA 59.389 33.333 32.50 20.80 37.91 2.69
3165 7008 2.861935 CAAGCTTGAAGGTTTGCACAAG 59.138 45.455 22.31 7.85 41.46 3.16
3233 7076 7.390996 TCAAGCCAACATATTTGCAATTTGATT 59.609 29.630 0.00 0.00 0.00 2.57
3278 7121 7.173907 GGACCACATTCTTTGATATGACCTATG 59.826 40.741 0.00 0.00 0.00 2.23
3396 7254 4.361451 ACAACACAAACAAGCAGAAGAG 57.639 40.909 0.00 0.00 0.00 2.85
3432 7291 7.497773 AGTTGTCTAATAAGCCTTACCTCTT 57.502 36.000 0.00 0.00 0.00 2.85
3443 7302 7.689446 AAGCCTTACCTCTTTTTCAGTATTC 57.311 36.000 0.00 0.00 0.00 1.75
3445 7304 6.655425 AGCCTTACCTCTTTTTCAGTATTCAC 59.345 38.462 0.00 0.00 0.00 3.18
3594 8855 4.937620 GCATCCTCTCAACATGTAACTTCA 59.062 41.667 0.00 0.00 0.00 3.02
3733 8996 5.013079 GGGTTTCTTTCCAAATTGAAGGGAT 59.987 40.000 0.00 0.00 0.00 3.85
3737 9000 3.959535 TTCCAAATTGAAGGGATGTGC 57.040 42.857 0.00 0.00 0.00 4.57
3754 9017 6.347725 GGGATGTGCTATAAAATAGAAGTGCG 60.348 42.308 0.00 0.00 0.00 5.34
3805 9068 9.216117 GTGAAAACCACTAGTACAATAGAACAT 57.784 33.333 0.00 0.00 42.44 2.71
3864 9127 2.731572 AGAACATCCTTGCAATCTGGG 58.268 47.619 0.00 0.00 0.00 4.45
3865 9128 2.309755 AGAACATCCTTGCAATCTGGGA 59.690 45.455 7.53 7.53 0.00 4.37
3877 9140 5.015515 TGCAATCTGGGAATCAACAATGTA 58.984 37.500 0.00 0.00 0.00 2.29
3897 11062 8.386606 CAATGTATCTCTCTTCAGCAGTAAAAC 58.613 37.037 0.00 0.00 0.00 2.43
3898 11063 7.233389 TGTATCTCTCTTCAGCAGTAAAACT 57.767 36.000 0.00 0.00 0.00 2.66
3903 11068 6.437477 TCTCTCTTCAGCAGTAAAACTATCCA 59.563 38.462 0.00 0.00 0.00 3.41
3913 11078 7.048512 GCAGTAAAACTATCCAAGATACTGGT 58.951 38.462 10.85 0.00 38.87 4.00
3923 11089 3.274288 CAAGATACTGGTCTGCTTTCCC 58.726 50.000 0.00 0.00 0.00 3.97
3926 11092 3.589288 AGATACTGGTCTGCTTTCCCTTT 59.411 43.478 0.00 0.00 0.00 3.11
3927 11093 2.278332 ACTGGTCTGCTTTCCCTTTC 57.722 50.000 0.00 0.00 0.00 2.62
3931 11097 3.638627 CTGGTCTGCTTTCCCTTTCTTTT 59.361 43.478 0.00 0.00 0.00 2.27
3956 11122 2.880890 GCTGATAATGGCAAACTCGGAT 59.119 45.455 0.00 0.00 0.00 4.18
4009 11175 2.122783 TTGGTGCACTATTGGCTACC 57.877 50.000 17.98 0.00 34.86 3.18
4066 11232 7.887495 AGTTTCTCAAGAAGAGGATAAGCAATT 59.113 33.333 0.00 0.00 44.81 2.32
4103 11269 0.977395 ACCAGCACCTGTAGTCTTCC 59.023 55.000 0.00 0.00 0.00 3.46
4111 11277 4.804261 GCACCTGTAGTCTTCCAAAGATGT 60.804 45.833 0.00 0.00 40.18 3.06
4112 11278 5.568825 GCACCTGTAGTCTTCCAAAGATGTA 60.569 44.000 0.00 0.00 40.18 2.29
4141 11307 6.049955 TCACTCTTGAATAACTTACAGGGG 57.950 41.667 0.00 0.00 0.00 4.79
4145 11311 7.611855 CACTCTTGAATAACTTACAGGGGAAAT 59.388 37.037 0.00 0.00 0.00 2.17
4242 11408 9.589461 CTTAGGATTAGAATAGTGGTTCTCCTA 57.411 37.037 0.00 0.00 39.15 2.94
4262 11428 1.423584 TGTATCATCGGCAGTCCCAT 58.576 50.000 0.00 0.00 0.00 4.00
4278 11444 1.756538 CCCATATCCAAACCCAGCAAC 59.243 52.381 0.00 0.00 0.00 4.17
4280 11446 2.428171 CCATATCCAAACCCAGCAACAG 59.572 50.000 0.00 0.00 0.00 3.16
4288 11454 1.915141 ACCCAGCAACAGAAGATTGG 58.085 50.000 0.00 0.00 0.00 3.16
4308 11474 0.460284 GTGTTCGATCCAGACGCCAT 60.460 55.000 0.00 0.00 0.00 4.40
4312 11478 0.534873 TCGATCCAGACGCCATTCAA 59.465 50.000 0.00 0.00 0.00 2.69
4313 11479 1.138859 TCGATCCAGACGCCATTCAAT 59.861 47.619 0.00 0.00 0.00 2.57
4320 11486 3.303329 CCAGACGCCATTCAATAACATCG 60.303 47.826 0.00 0.00 0.00 3.84
4360 11526 8.421002 TCATATAAATTCATCGGACAGTTGAGA 58.579 33.333 0.00 0.00 30.99 3.27
4394 11560 3.587061 TCCAGTACATGTTGACCCTTGAT 59.413 43.478 2.30 0.00 0.00 2.57
4433 11599 1.203052 CAAGCAATCCACCGAAGCAAT 59.797 47.619 0.00 0.00 0.00 3.56
4442 11608 5.073311 TCCACCGAAGCAATAGATATAGC 57.927 43.478 0.00 0.00 0.00 2.97
4446 11612 6.350194 CCACCGAAGCAATAGATATAGCAGTA 60.350 42.308 0.00 0.00 0.00 2.74
4449 11615 8.407064 ACCGAAGCAATAGATATAGCAGTATAC 58.593 37.037 0.00 0.00 0.00 1.47
4679 11876 1.066645 TCGCAGCAACTGACAGATGAT 60.067 47.619 16.24 7.29 32.44 2.45
4685 11882 2.558378 CAACTGACAGATGATGGCGAT 58.442 47.619 10.08 0.00 41.39 4.58
4686 11883 3.721035 CAACTGACAGATGATGGCGATA 58.279 45.455 10.08 0.00 41.39 2.92
4687 11884 3.657015 ACTGACAGATGATGGCGATAG 57.343 47.619 10.08 0.00 41.39 2.08
4703 11900 4.587211 CGATAGCTGATAGGACTCGTAC 57.413 50.000 0.00 0.00 0.00 3.67
4707 11904 4.005487 AGCTGATAGGACTCGTACGTAT 57.995 45.455 16.05 5.07 0.00 3.06
4711 11908 3.811497 TGATAGGACTCGTACGTATGGTG 59.189 47.826 16.05 10.29 0.00 4.17
4713 11910 3.266510 AGGACTCGTACGTATGGTGTA 57.733 47.619 16.05 0.00 0.00 2.90
4820 12017 0.326264 CAGCCCCATACTATCCCTGC 59.674 60.000 0.00 0.00 0.00 4.85
4821 12018 0.842467 AGCCCCATACTATCCCTGCC 60.842 60.000 0.00 0.00 0.00 4.85
4835 12032 1.067582 CTGCCGTATCCCCTTCGTC 59.932 63.158 0.00 0.00 0.00 4.20
4838 12035 1.389609 GCCGTATCCCCTTCGTCTCA 61.390 60.000 0.00 0.00 0.00 3.27
4842 12039 2.100989 GTATCCCCTTCGTCTCACAGT 58.899 52.381 0.00 0.00 0.00 3.55
4940 12137 1.273154 TGGGTGTGTATCCCCGTTCTA 60.273 52.381 0.00 0.00 44.44 2.10
4957 12154 4.319622 CGTTCTAGACGTGTATCCTCCATC 60.320 50.000 0.00 0.00 46.49 3.51
4999 12196 0.183492 TCCCTGCAACATAGATGGGC 59.817 55.000 0.00 0.00 34.89 5.36
5037 12234 0.797249 GCGCTGTGGTGTAGTCGTAG 60.797 60.000 0.00 0.00 0.00 3.51
5045 12242 2.029649 TGGTGTAGTCGTAGGTTGAAGC 60.030 50.000 0.00 0.00 0.00 3.86
5077 12274 7.016466 CAGTTTAGTTGTGTTTTGTGTAACGA 58.984 34.615 0.00 0.00 42.39 3.85
5135 12332 4.566004 CTCGGACAGGAATTACTTTGTCA 58.434 43.478 11.13 0.00 41.22 3.58
5139 12336 5.643777 CGGACAGGAATTACTTTGTCATCTT 59.356 40.000 11.13 0.00 41.22 2.40
5141 12338 6.431234 GGACAGGAATTACTTTGTCATCTTGT 59.569 38.462 11.13 0.00 41.22 3.16
5177 12374 9.098355 TGCTATTAATGATATGCTATTCCGTTC 57.902 33.333 0.00 0.00 0.00 3.95
5259 12457 2.724690 GCGGCTGTCGTATACACATAAG 59.275 50.000 2.76 2.97 41.72 1.73
5277 12479 7.288852 ACACATAAGTACAAGAGCTGAGGATAT 59.711 37.037 0.00 0.00 0.00 1.63
5294 12496 6.370442 TGAGGATATTTGTGTTTCCAGTAACG 59.630 38.462 0.00 0.00 0.00 3.18
5300 12502 5.838531 TTGTGTTTCCAGTAACGGAATTT 57.161 34.783 0.00 0.00 44.49 1.82
5365 12567 4.325028 ACATTTGTCATTCTGCAAGCAA 57.675 36.364 0.00 0.00 0.00 3.91
5409 12611 6.517605 TGCTATATGTAACGCCAATGTTCTA 58.482 36.000 0.00 0.00 33.32 2.10
5413 12615 9.424319 CTATATGTAACGCCAATGTTCTATTCT 57.576 33.333 0.00 0.00 33.32 2.40
5416 12618 3.350219 ACGCCAATGTTCTATTCTGGT 57.650 42.857 0.00 0.00 0.00 4.00
5421 12623 5.106157 CGCCAATGTTCTATTCTGGTTTCTT 60.106 40.000 0.00 0.00 0.00 2.52
5427 12629 5.470098 TGTTCTATTCTGGTTTCTTCACTGC 59.530 40.000 0.00 0.00 0.00 4.40
5437 12639 4.919754 GGTTTCTTCACTGCATCAATGTTC 59.080 41.667 0.00 0.00 0.00 3.18
5446 12648 7.532571 TCACTGCATCAATGTTCTTTCTATTG 58.467 34.615 0.00 0.00 34.07 1.90
5449 12651 7.092137 TGCATCAATGTTCTTTCTATTGGAG 57.908 36.000 0.00 0.00 33.70 3.86
5455 12657 8.593679 TCAATGTTCTTTCTATTGGAGTACTCA 58.406 33.333 23.91 5.26 33.70 3.41
5478 12680 1.108727 ACATTGGTGCAGGGTGTGTG 61.109 55.000 0.00 0.00 0.00 3.82
5514 12716 2.463620 GCTCATGTCATTCGCGCCA 61.464 57.895 0.00 0.00 0.00 5.69
5515 12717 1.779025 GCTCATGTCATTCGCGCCAT 61.779 55.000 0.00 0.00 0.00 4.40
5520 12722 1.662517 TGTCATTCGCGCCATTGTAT 58.337 45.000 0.00 0.00 0.00 2.29
5540 12742 6.631016 TGTATAGCCATAATTAGAAGAGCCG 58.369 40.000 0.00 0.00 0.00 5.52
5599 12801 6.879276 ATTCATGCCAATCTTATGTCTCAG 57.121 37.500 0.00 0.00 0.00 3.35
5605 12807 4.397417 GCCAATCTTATGTCTCAGCAAGTT 59.603 41.667 0.00 0.00 0.00 2.66
5626 12828 8.488764 CAAGTTGAACTTTGTCGGTTTTTAAAA 58.511 29.630 8.03 0.00 36.03 1.52
5656 12858 7.631717 TGATACTACTTATCTGCTATCGCAT 57.368 36.000 0.00 0.00 46.74 4.73
5666 12868 1.412343 TGCTATCGCATGCAAGTCCTA 59.588 47.619 19.57 0.00 42.25 2.94
5672 12874 3.146066 TCGCATGCAAGTCCTAGTTTTT 58.854 40.909 19.57 0.00 0.00 1.94
5752 12954 9.350357 GAGAATAGTATTATGGCATTGCAAATG 57.650 33.333 4.78 3.83 0.00 2.32
5773 12975 7.628769 AATGTGCTTATGTGTATCAACATGA 57.371 32.000 0.00 0.00 40.93 3.07
5798 13000 9.736023 GACCCAGTAGCATTTAATAAATTTCTG 57.264 33.333 0.00 3.36 0.00 3.02
5814 13016 7.709149 AAATTTCTGATTTTCCGATCTTCCT 57.291 32.000 0.00 0.00 0.00 3.36
5815 13017 6.690194 ATTTCTGATTTTCCGATCTTCCTG 57.310 37.500 0.00 0.00 0.00 3.86
5819 13021 6.003950 TCTGATTTTCCGATCTTCCTGTTTT 58.996 36.000 0.00 0.00 0.00 2.43
5820 13022 6.012658 TGATTTTCCGATCTTCCTGTTTTG 57.987 37.500 0.00 0.00 0.00 2.44
5874 13077 1.736126 CTCTCGTGCGTGGAGTACTTA 59.264 52.381 0.00 0.00 33.01 2.24
5893 13096 2.380064 ACATCCTGAGGCAAAAACCA 57.620 45.000 0.00 0.00 0.00 3.67
5947 13150 9.840427 ATGTTGCACAATAACTATTCTTTACAC 57.160 29.630 0.00 0.00 0.00 2.90
5948 13151 8.841300 TGTTGCACAATAACTATTCTTTACACA 58.159 29.630 0.00 0.00 0.00 3.72
5949 13152 9.113876 GTTGCACAATAACTATTCTTTACACAC 57.886 33.333 0.00 0.00 0.00 3.82
5950 13153 8.384607 TGCACAATAACTATTCTTTACACACA 57.615 30.769 0.00 0.00 0.00 3.72
5951 13154 8.286800 TGCACAATAACTATTCTTTACACACAC 58.713 33.333 0.00 0.00 0.00 3.82
5952 13155 8.286800 GCACAATAACTATTCTTTACACACACA 58.713 33.333 0.00 0.00 0.00 3.72
5953 13156 9.594038 CACAATAACTATTCTTTACACACACAC 57.406 33.333 0.00 0.00 0.00 3.82
5954 13157 9.332502 ACAATAACTATTCTTTACACACACACA 57.667 29.630 0.00 0.00 0.00 3.72
5955 13158 9.594038 CAATAACTATTCTTTACACACACACAC 57.406 33.333 0.00 0.00 0.00 3.82
5956 13159 8.896320 ATAACTATTCTTTACACACACACACA 57.104 30.769 0.00 0.00 0.00 3.72
5957 13160 6.598753 ACTATTCTTTACACACACACACAC 57.401 37.500 0.00 0.00 0.00 3.82
5958 13161 6.110033 ACTATTCTTTACACACACACACACA 58.890 36.000 0.00 0.00 0.00 3.72
5959 13162 4.671880 TTCTTTACACACACACACACAC 57.328 40.909 0.00 0.00 0.00 3.82
5960 13163 3.665190 TCTTTACACACACACACACACA 58.335 40.909 0.00 0.00 0.00 3.72
5961 13164 3.433957 TCTTTACACACACACACACACAC 59.566 43.478 0.00 0.00 0.00 3.82
5962 13165 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
5963 13166 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5983 13186 5.360999 CACACTCTCTCTCTCTCTCTCTCTA 59.639 48.000 0.00 0.00 0.00 2.43
5990 13193 5.707764 TCTCTCTCTCTCTCTCTATCTCTCG 59.292 48.000 0.00 0.00 0.00 4.04
5991 13194 4.218635 TCTCTCTCTCTCTCTATCTCTCGC 59.781 50.000 0.00 0.00 0.00 5.03
5992 13195 4.152647 TCTCTCTCTCTCTATCTCTCGCT 58.847 47.826 0.00 0.00 0.00 4.93
5993 13196 4.218635 TCTCTCTCTCTCTATCTCTCGCTC 59.781 50.000 0.00 0.00 0.00 5.03
6034 13237 5.510430 TGGTCTTATCTGTTCTCTGCTCTA 58.490 41.667 0.00 0.00 0.00 2.43
6046 13249 3.640498 TCTCTGCTCTATGATTCACAGGG 59.360 47.826 0.00 0.00 0.00 4.45
6058 13261 3.958860 ACAGGGACCAGCCAGTGC 61.959 66.667 0.00 0.00 38.95 4.40
6071 13274 2.819667 CAGTGCTGGACTTCGACAG 58.180 57.895 0.00 0.00 37.76 3.51
6480 13683 6.740110 TGTTTTATTCAAGTGTATGCCGTTT 58.260 32.000 0.00 0.00 0.00 3.60
6489 13692 4.749976 AGTGTATGCCGTTTGTTTTGTTT 58.250 34.783 0.00 0.00 0.00 2.83
6490 13693 5.172205 AGTGTATGCCGTTTGTTTTGTTTT 58.828 33.333 0.00 0.00 0.00 2.43
6491 13694 5.062809 AGTGTATGCCGTTTGTTTTGTTTTG 59.937 36.000 0.00 0.00 0.00 2.44
6492 13695 2.882742 TGCCGTTTGTTTTGTTTTGC 57.117 40.000 0.00 0.00 0.00 3.68
6493 13696 1.126846 TGCCGTTTGTTTTGTTTTGCG 59.873 42.857 0.00 0.00 0.00 4.85
6494 13697 1.390463 GCCGTTTGTTTTGTTTTGCGA 59.610 42.857 0.00 0.00 0.00 5.10
6499 13702 2.299993 TGTTTTGTTTTGCGATGCCA 57.700 40.000 0.00 0.00 0.00 4.92
6503 13706 1.780806 TTGTTTTGCGATGCCATGTG 58.219 45.000 0.00 0.00 0.00 3.21
6504 13707 0.038435 TGTTTTGCGATGCCATGTGG 60.038 50.000 0.00 0.00 38.53 4.17
6517 13720 1.745087 CCATGTGGCCATAGTTGTGTC 59.255 52.381 9.72 0.00 0.00 3.67
6526 13729 4.332819 GGCCATAGTTGTGTCTCATGTAAC 59.667 45.833 0.00 0.00 0.00 2.50
6528 13731 4.566759 CCATAGTTGTGTCTCATGTAACGG 59.433 45.833 0.00 0.00 0.00 4.44
6529 13732 5.407502 CATAGTTGTGTCTCATGTAACGGA 58.592 41.667 0.00 0.00 0.00 4.69
6531 13734 4.307432 AGTTGTGTCTCATGTAACGGAAG 58.693 43.478 0.00 0.00 0.00 3.46
6546 13749 3.458189 ACGGAAGTGCTAGTATTCATGC 58.542 45.455 0.00 0.00 46.97 4.06
6600 13803 1.291132 GTCATCTTGCTAGCGTTCCC 58.709 55.000 10.77 0.00 0.00 3.97
6613 13816 2.158813 AGCGTTCCCGGTATTGATGATT 60.159 45.455 0.00 0.00 44.16 2.57
6653 13856 7.416964 TGCTAATGCCAATGGTAGTTATTTT 57.583 32.000 0.00 0.00 38.71 1.82
6690 13893 4.023980 TCTGATCGGATAGTTGTCTTGGT 58.976 43.478 0.00 0.00 0.00 3.67
6742 13945 6.683715 AGTAGAAGAGCTGAGTTTAGTTGTC 58.316 40.000 0.00 0.00 0.00 3.18
6752 13955 9.343539 AGCTGAGTTTAGTTGTCTTTTCTTAAT 57.656 29.630 0.00 0.00 0.00 1.40
6786 13989 2.174685 TCCTGCCAATAGGAGTGCTA 57.825 50.000 0.00 0.00 41.85 3.49
6808 14011 8.046708 TGCTATAGCTCATCAAGGAAAACTTTA 58.953 33.333 24.61 0.00 42.66 1.85
6815 14018 7.483059 GCTCATCAAGGAAAACTTTATCTTTCG 59.517 37.037 0.00 0.00 37.29 3.46
6819 14022 5.629079 AGGAAAACTTTATCTTTCGGCAG 57.371 39.130 0.00 0.00 33.24 4.85
6837 14040 8.725405 TTCGGCAGACATTTCTTGTATTAATA 57.275 30.769 0.00 0.00 39.18 0.98
6871 14074 1.132262 CGTGCCGCCAATGTTAATTCT 59.868 47.619 0.00 0.00 0.00 2.40
6880 14083 5.925969 CGCCAATGTTAATTCTTGGTTTCTT 59.074 36.000 12.49 0.00 41.23 2.52
6890 14093 6.899393 ATTCTTGGTTTCTTCACTGCATTA 57.101 33.333 0.00 0.00 0.00 1.90
6939 14142 0.391130 CAGGGTGTGTACGTCATGGG 60.391 60.000 0.00 0.00 0.00 4.00
6963 14166 0.037697 TGGCTTGTATCGTTCGTGCT 60.038 50.000 0.00 0.00 0.00 4.40
7024 14227 5.050227 TGTGTTTCGTGTAAGGGAATTAACG 60.050 40.000 0.00 0.00 33.24 3.18
7030 14244 8.721019 TTCGTGTAAGGGAATTAACGATATTT 57.279 30.769 0.00 0.00 37.07 1.40
7240 14461 3.807071 TGTGTATCGACATGCGCAATATT 59.193 39.130 17.11 0.00 38.04 1.28
7241 14462 4.985409 TGTGTATCGACATGCGCAATATTA 59.015 37.500 17.11 0.00 38.04 0.98
7275 14496 9.057089 AGTATGCTAAATTTCTAATTTCCCGAG 57.943 33.333 0.00 0.00 0.00 4.63
7456 14679 9.733556 TTGTTCACATTCTATATGTAAACCTGT 57.266 29.630 0.00 0.00 30.95 4.00
7584 14818 8.989980 CGGTTCATTTCCTAAATATACCTCTTC 58.010 37.037 10.70 0.00 34.14 2.87
7603 14837 8.228206 ACCTCTTCCATTACTCTCATGTATCTA 58.772 37.037 0.00 0.00 0.00 1.98
7604 14838 9.253832 CCTCTTCCATTACTCTCATGTATCTAT 57.746 37.037 0.00 0.00 0.00 1.98
7617 14851 2.634940 TGTATCTATTGAGCTCCAGGCC 59.365 50.000 12.15 0.00 43.05 5.19
7621 14855 1.487976 CTATTGAGCTCCAGGCCTTCA 59.512 52.381 12.15 0.00 43.05 3.02
7641 14875 7.095017 GCCTTCATTTATAGCATGACTAAGTCC 60.095 40.741 0.00 0.00 33.57 3.85
7784 15033 5.425217 TGGCTCCTGTTATGAATGAGTTCTA 59.575 40.000 0.00 0.00 35.33 2.10
7794 15043 4.122046 TGAATGAGTTCTATGATGTGCGG 58.878 43.478 0.00 0.00 35.33 5.69
7831 15080 4.348168 CCATACTGCAGGTAGTCCCTTATT 59.652 45.833 19.93 0.00 42.73 1.40
7843 15092 6.996879 GGTAGTCCCTTATTTCCCTATGTTTC 59.003 42.308 0.00 0.00 0.00 2.78
7846 15095 6.912561 AGTCCCTTATTTCCCTATGTTTCCTA 59.087 38.462 0.00 0.00 0.00 2.94
7869 15119 8.290325 CCTATTTTACACCAAACTTCTCACTTC 58.710 37.037 0.00 0.00 0.00 3.01
7872 15122 7.781548 TTTACACCAAACTTCTCACTTCTAC 57.218 36.000 0.00 0.00 0.00 2.59
7979 15230 2.480845 AGAACCGTTTCGTTTCTGGAG 58.519 47.619 1.60 0.00 36.78 3.86
7992 15243 0.622136 TCTGGAGCACATTGGAGCAT 59.378 50.000 6.21 0.00 32.55 3.79
8002 15253 6.646267 AGCACATTGGAGCATTTAATTTGAT 58.354 32.000 6.21 0.00 32.55 2.57
8013 15264 9.286946 GAGCATTTAATTTGATGTCTCTGAAAG 57.713 33.333 12.48 0.00 0.00 2.62
8017 15268 8.924511 TTTAATTTGATGTCTCTGAAAGTCCT 57.075 30.769 0.00 0.00 33.76 3.85
8076 15327 1.874915 CACGGCCGTGTACGTATGG 60.875 63.158 42.92 20.11 42.04 2.74
8113 15364 3.702792 TGGAGTTTCTTTGTTTCCCACA 58.297 40.909 0.00 0.00 0.00 4.17
8114 15365 4.090090 TGGAGTTTCTTTGTTTCCCACAA 58.910 39.130 0.00 0.00 44.11 3.33
8125 15376 2.871633 GTTTCCCACAAATTGCCAAGTG 59.128 45.455 0.00 0.00 0.00 3.16
8159 15410 7.402054 TGATATTGACCACCTTTCAACATAGT 58.598 34.615 0.00 0.00 35.82 2.12
8250 15501 9.377312 ACATTCTTCTTCTTCTTCTTATGTAGC 57.623 33.333 0.00 0.00 0.00 3.58
8262 15513 4.610333 TCTTATGTAGCTGGAGGAACAGA 58.390 43.478 0.00 0.00 40.97 3.41
8264 15515 5.663106 TCTTATGTAGCTGGAGGAACAGATT 59.337 40.000 0.00 0.00 40.97 2.40
8274 15525 3.614092 GAGGAACAGATTGATGCCTTGA 58.386 45.455 0.00 0.00 0.00 3.02
8295 15546 4.141551 TGAGCCCTAAGTACTAGTGATCGA 60.142 45.833 5.39 0.00 0.00 3.59
8299 15550 6.016108 AGCCCTAAGTACTAGTGATCGAAATC 60.016 42.308 5.39 0.00 0.00 2.17
8331 15582 0.484212 CCCCATGTTATCCCTGGCAT 59.516 55.000 0.00 0.00 0.00 4.40
8351 15602 6.156256 TGGCATAGTGGGGTATATGTATCTTC 59.844 42.308 0.00 0.00 32.94 2.87
8368 15619 8.737168 TGTATCTTCCAATATATAGGCAATGC 57.263 34.615 0.00 0.00 0.00 3.56
8394 15645 1.266989 GTGTGTTGAGCTTAAGTGGGC 59.733 52.381 4.02 0.00 0.00 5.36
8397 15648 2.032634 TTGAGCTTAAGTGGGCGCG 61.033 57.895 0.00 0.00 0.00 6.86
8399 15650 2.032071 AGCTTAAGTGGGCGCGTT 59.968 55.556 8.43 0.00 0.00 4.84
9169 16422 0.468029 CTGGCACTTGGAAGGGTGTT 60.468 55.000 0.00 0.00 36.03 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.512156 GCTTTTCGGCCCAGTTTCGA 61.512 55.000 0.00 0.00 0.00 3.71
46 47 0.179045 GACGATTGGGTCCCCATCTG 60.179 60.000 17.76 13.72 46.64 2.90
68 69 1.701545 CGGAGCAAAAATCGGCGCTA 61.702 55.000 7.64 0.00 34.12 4.26
249 253 0.249784 TAACCTAAACCACGCACGCA 60.250 50.000 0.00 0.00 0.00 5.24
250 254 0.441145 CTAACCTAAACCACGCACGC 59.559 55.000 0.00 0.00 0.00 5.34
251 255 1.458064 CACTAACCTAAACCACGCACG 59.542 52.381 0.00 0.00 0.00 5.34
252 256 1.802365 CCACTAACCTAAACCACGCAC 59.198 52.381 0.00 0.00 0.00 5.34
253 257 1.878948 GCCACTAACCTAAACCACGCA 60.879 52.381 0.00 0.00 0.00 5.24
416 420 0.107752 GAGGTAGACGACGGAGAGGT 60.108 60.000 0.00 0.00 0.00 3.85
700 710 0.381089 CCGGACGATGGTCTGTAGAC 59.619 60.000 14.72 3.43 46.21 2.59
702 712 1.319541 ATCCGGACGATGGTCTGTAG 58.680 55.000 6.12 1.89 46.21 2.74
703 713 2.105306 TCTATCCGGACGATGGTCTGTA 59.895 50.000 6.12 0.10 46.21 2.74
717 727 1.660917 GGAAGGGAGCGTCTATCCG 59.339 63.158 0.00 0.00 37.75 4.18
734 744 2.742372 CTCCAAACGGGTGCTCGG 60.742 66.667 0.00 0.00 38.11 4.63
737 747 2.113139 CACCTCCAAACGGGTGCT 59.887 61.111 0.00 0.00 44.94 4.40
742 752 2.033602 GGTCCCACCTCCAAACGG 59.966 66.667 0.00 0.00 34.73 4.44
747 757 2.040359 TGTGTGGTCCCACCTCCA 60.040 61.111 13.70 5.42 45.63 3.86
869 885 0.753111 GCCCCTTGTATTGCTCAGGG 60.753 60.000 0.00 0.00 36.40 4.45
936 952 2.124901 CGGCGTGCTGGGGAATTA 60.125 61.111 0.00 0.00 0.00 1.40
1010 1026 1.152652 ATCTCGGCCCTGATCTCGT 60.153 57.895 0.00 0.00 0.00 4.18
1012 1028 1.043816 TTGATCTCGGCCCTGATCTC 58.956 55.000 24.31 9.22 39.63 2.75
1033 1049 1.209747 GAACTTGGAGGCGATAAGGGT 59.790 52.381 0.00 0.00 0.00 4.34
1034 1050 1.806623 CGAACTTGGAGGCGATAAGGG 60.807 57.143 0.00 0.00 0.00 3.95
1065 1081 0.618458 CGTTGATTGAAGGGAGGGGA 59.382 55.000 0.00 0.00 0.00 4.81
1069 1085 1.003118 TGGGACGTTGATTGAAGGGAG 59.997 52.381 0.00 0.00 0.00 4.30
1070 1086 1.060729 TGGGACGTTGATTGAAGGGA 58.939 50.000 0.00 0.00 0.00 4.20
1075 1091 3.331150 GTGTACATGGGACGTTGATTGA 58.669 45.455 0.00 0.00 0.00 2.57
1077 1097 2.617021 GGGTGTACATGGGACGTTGATT 60.617 50.000 0.00 0.00 0.00 2.57
1112 1132 3.644966 TTAATTCCCAGCGATTCCAGT 57.355 42.857 0.00 0.00 0.00 4.00
1125 1145 4.970003 CGATTGAAGACGGCAATTAATTCC 59.030 41.667 0.00 2.57 36.19 3.01
1127 1147 4.920376 CCGATTGAAGACGGCAATTAATT 58.080 39.130 0.00 0.00 42.55 1.40
1161 1181 1.682684 AGGTCAGGTCAGGTAGCCG 60.683 63.158 0.00 0.00 0.00 5.52
1167 1187 0.987294 AATGGTCAGGTCAGGTCAGG 59.013 55.000 0.00 0.00 0.00 3.86
1173 1193 1.735386 CAGAGCAATGGTCAGGTCAG 58.265 55.000 15.20 0.00 34.85 3.51
1175 1195 1.028868 GGCAGAGCAATGGTCAGGTC 61.029 60.000 15.20 4.18 31.89 3.85
1176 1196 1.001641 GGCAGAGCAATGGTCAGGT 60.002 57.895 15.20 0.00 31.89 4.00
1177 1197 2.110967 CGGCAGAGCAATGGTCAGG 61.111 63.158 15.20 7.42 31.89 3.86
1178 1198 1.376424 ACGGCAGAGCAATGGTCAG 60.376 57.895 15.20 7.86 31.89 3.51
1179 1199 1.672030 CACGGCAGAGCAATGGTCA 60.672 57.895 15.20 0.00 31.89 4.02
1180 1200 2.401766 CCACGGCAGAGCAATGGTC 61.402 63.158 3.97 3.97 32.62 4.02
1181 1201 2.360350 CCACGGCAGAGCAATGGT 60.360 61.111 0.00 0.00 32.62 3.55
1182 1202 2.360350 ACCACGGCAGAGCAATGG 60.360 61.111 8.65 8.65 39.82 3.16
1183 1203 2.693762 CCACCACGGCAGAGCAATG 61.694 63.158 0.00 0.00 0.00 2.82
1184 1204 2.202236 ATCCACCACGGCAGAGCAAT 62.202 55.000 0.00 0.00 33.14 3.56
1256 1276 1.887707 GGCCCTTGCGTATCTTCCG 60.888 63.158 0.00 0.00 38.85 4.30
1257 1277 0.815615 CAGGCCCTTGCGTATCTTCC 60.816 60.000 0.00 0.00 38.85 3.46
1274 1294 0.526211 TCAATGACCTCGACGACCAG 59.474 55.000 0.00 0.00 0.00 4.00
1282 1302 1.135083 AGGTAGCGTTCAATGACCTCG 60.135 52.381 0.00 0.00 35.57 4.63
1291 1311 1.582968 GTCGTGGAGGTAGCGTTCA 59.417 57.895 0.00 0.00 0.00 3.18
1306 1326 1.586564 GAGGATCTTGTCGGCGTCG 60.587 63.158 1.15 1.15 37.82 5.12
1312 1332 2.363788 TTTCGGTGAGGATCTTGTCG 57.636 50.000 0.00 0.00 34.92 4.35
1365 1385 1.661617 AGAGACGAGAATGACGAGACG 59.338 52.381 0.00 0.00 34.70 4.18
1368 1388 2.537931 CCGAAGAGACGAGAATGACGAG 60.538 54.545 0.00 0.00 35.09 4.18
1478 5145 2.348998 CTGCACCCCTCGAGCTTT 59.651 61.111 6.99 0.00 0.00 3.51
1479 5146 4.400961 GCTGCACCCCTCGAGCTT 62.401 66.667 6.99 0.00 0.00 3.74
1518 5185 4.530553 ACATGGAAAGGGGGTTAATTTGTC 59.469 41.667 0.00 0.00 0.00 3.18
1520 5187 5.221823 ACAACATGGAAAGGGGGTTAATTTG 60.222 40.000 0.00 0.00 0.00 2.32
1522 5189 4.498493 ACAACATGGAAAGGGGGTTAATT 58.502 39.130 0.00 0.00 0.00 1.40
1524 5191 3.502356 GACAACATGGAAAGGGGGTTAA 58.498 45.455 0.00 0.00 0.00 2.01
1525 5192 2.225167 GGACAACATGGAAAGGGGGTTA 60.225 50.000 0.00 0.00 0.00 2.85
1526 5193 1.482365 GGACAACATGGAAAGGGGGTT 60.482 52.381 0.00 0.00 0.00 4.11
1527 5194 0.114364 GGACAACATGGAAAGGGGGT 59.886 55.000 0.00 0.00 0.00 4.95
1540 5207 3.865071 AAAAAGGGCGGGGACAAC 58.135 55.556 0.00 0.00 0.00 3.32
1559 5226 5.867716 GCGGAGATACAAACTTAGAGTTGAA 59.132 40.000 7.24 0.00 38.66 2.69
1560 5227 5.185249 AGCGGAGATACAAACTTAGAGTTGA 59.815 40.000 7.24 0.00 38.66 3.18
1561 5228 5.289675 CAGCGGAGATACAAACTTAGAGTTG 59.710 44.000 0.00 0.00 38.66 3.16
1576 5243 1.674441 CAACATTGATGCAGCGGAGAT 59.326 47.619 0.00 0.00 0.00 2.75
1595 5262 6.448852 CCATGACAAACAAATCTGAATGTCA 58.551 36.000 11.92 11.92 45.98 3.58
1603 5270 3.756434 CCGTACCCATGACAAACAAATCT 59.244 43.478 0.00 0.00 0.00 2.40
1607 5274 1.545875 CCCCGTACCCATGACAAACAA 60.546 52.381 0.00 0.00 0.00 2.83
1638 5324 4.326009 CCATTTTTAGAAAATGCCGTTCCG 59.674 41.667 16.69 2.75 36.56 4.30
1668 5355 3.057033 ACGCATATACTTGTCGTATCCCC 60.057 47.826 0.00 0.00 39.48 4.81
1675 5362 6.314784 TCATCATCTACGCATATACTTGTCG 58.685 40.000 0.00 0.00 0.00 4.35
1677 5364 7.433680 TGTTCATCATCTACGCATATACTTGT 58.566 34.615 0.00 0.00 0.00 3.16
1679 5366 8.887036 TTTGTTCATCATCTACGCATATACTT 57.113 30.769 0.00 0.00 0.00 2.24
1701 5388 8.531622 TTGTAATGCACCATTGAACTATTTTG 57.468 30.769 0.00 0.00 35.54 2.44
1766 5453 0.680618 CCTTGGCATTCAACTTGGCA 59.319 50.000 0.00 0.00 46.51 4.92
1767 5454 0.671472 GCCTTGGCATTCAACTTGGC 60.671 55.000 6.79 0.00 37.16 4.52
1768 5455 0.971386 AGCCTTGGCATTCAACTTGG 59.029 50.000 14.54 0.00 0.00 3.61
1769 5456 2.557924 TGTAGCCTTGGCATTCAACTTG 59.442 45.455 14.54 0.00 0.00 3.16
1770 5457 2.875296 TGTAGCCTTGGCATTCAACTT 58.125 42.857 14.54 0.00 0.00 2.66
1771 5458 2.584835 TGTAGCCTTGGCATTCAACT 57.415 45.000 14.54 0.00 0.00 3.16
1772 5459 3.005791 AGTTTGTAGCCTTGGCATTCAAC 59.994 43.478 14.54 10.63 0.00 3.18
1773 5460 3.230134 AGTTTGTAGCCTTGGCATTCAA 58.770 40.909 14.54 11.98 0.00 2.69
1774 5461 2.875296 AGTTTGTAGCCTTGGCATTCA 58.125 42.857 14.54 6.84 0.00 2.57
1775 5462 3.255642 TGAAGTTTGTAGCCTTGGCATTC 59.744 43.478 14.54 4.38 0.00 2.67
1788 5487 5.059833 GGAGATGAAGTGTCTGAAGTTTGT 58.940 41.667 0.00 0.00 0.00 2.83
1815 5514 7.551974 CCCGAATTTGAGCAAGAGATATGATAT 59.448 37.037 0.00 0.00 0.00 1.63
1816 5515 6.875726 CCCGAATTTGAGCAAGAGATATGATA 59.124 38.462 0.00 0.00 0.00 2.15
1817 5516 5.704515 CCCGAATTTGAGCAAGAGATATGAT 59.295 40.000 0.00 0.00 0.00 2.45
1818 5517 5.059161 CCCGAATTTGAGCAAGAGATATGA 58.941 41.667 0.00 0.00 0.00 2.15
1819 5518 4.320057 GCCCGAATTTGAGCAAGAGATATG 60.320 45.833 0.00 0.00 0.00 1.78
1820 5519 3.817647 GCCCGAATTTGAGCAAGAGATAT 59.182 43.478 0.00 0.00 0.00 1.63
1821 5520 3.118261 AGCCCGAATTTGAGCAAGAGATA 60.118 43.478 1.65 0.00 0.00 1.98
1844 5543 2.012673 GTGTTGATCTGGCACCTGATC 58.987 52.381 22.81 22.81 45.53 2.92
1861 5563 4.193090 TGTGTTGTCGTATTTGAAGGTGT 58.807 39.130 0.00 0.00 0.00 4.16
1871 5573 5.670341 GCTTAATTTCGCTGTGTTGTCGTAT 60.670 40.000 0.00 0.00 0.00 3.06
1874 5576 2.902484 GCTTAATTTCGCTGTGTTGTCG 59.098 45.455 0.00 0.00 0.00 4.35
1876 5578 4.568152 AAGCTTAATTTCGCTGTGTTGT 57.432 36.364 0.00 0.00 36.45 3.32
1883 5585 4.518970 TGGTCTTGAAAGCTTAATTTCGCT 59.481 37.500 0.00 0.00 41.21 4.93
1884 5586 4.794169 TGGTCTTGAAAGCTTAATTTCGC 58.206 39.130 0.00 0.00 41.21 4.70
1885 5587 6.846350 AGATGGTCTTGAAAGCTTAATTTCG 58.154 36.000 0.00 0.00 41.21 3.46
1886 5588 7.094205 TGGAGATGGTCTTGAAAGCTTAATTTC 60.094 37.037 0.00 0.00 39.22 2.17
1888 5590 6.151817 GTGGAGATGGTCTTGAAAGCTTAATT 59.848 38.462 0.00 0.00 0.00 1.40
1889 5591 5.649831 GTGGAGATGGTCTTGAAAGCTTAAT 59.350 40.000 0.00 0.00 0.00 1.40
1890 5592 5.003804 GTGGAGATGGTCTTGAAAGCTTAA 58.996 41.667 0.00 0.00 0.00 1.85
1891 5593 4.565652 GGTGGAGATGGTCTTGAAAGCTTA 60.566 45.833 0.00 0.00 0.00 3.09
1897 5599 2.441375 TGTTGGTGGAGATGGTCTTGAA 59.559 45.455 0.00 0.00 0.00 2.69
1994 5696 3.070018 ACTGAACGAGCTGAGAATTTGG 58.930 45.455 0.00 0.00 0.00 3.28
1996 5698 4.691216 GGTTACTGAACGAGCTGAGAATTT 59.309 41.667 0.00 0.00 36.32 1.82
1999 5701 2.626266 TGGTTACTGAACGAGCTGAGAA 59.374 45.455 0.00 0.00 36.32 2.87
2015 5718 6.481643 AGCACTAAAAGAAATAGGCTGGTTA 58.518 36.000 0.00 0.00 30.67 2.85
2021 5724 5.897377 TTGGAGCACTAAAAGAAATAGGC 57.103 39.130 0.00 0.00 0.00 3.93
2081 5826 7.905493 CGTTAAAAGATTTAGCCTTGAAGCTAG 59.095 37.037 0.00 0.00 45.69 3.42
2107 5891 2.796483 TATGGTGTGCACACTCCGGC 62.796 60.000 40.20 27.19 45.32 6.13
2109 5893 1.078709 CTTATGGTGTGCACACTCCG 58.921 55.000 40.20 23.85 45.32 4.63
2131 5915 1.203162 TGATCCAAAGCAATGGTGGGT 60.203 47.619 7.57 0.00 41.46 4.51
2156 5940 4.809193 AGAGAGAGAGAGAGAGAGAGCTA 58.191 47.826 0.00 0.00 0.00 3.32
2163 5947 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2166 5950 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2167 5951 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2168 5952 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2169 5953 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2170 5954 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2171 5955 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2172 5956 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2173 5957 8.821686 ATATAGAGAGAGAGAGAGAGAGAGAG 57.178 42.308 0.00 0.00 0.00 3.20
2255 6039 9.814899 CTTCGAAGATCCAGAAGCAATATATAT 57.185 33.333 20.74 0.00 35.58 0.86
2256 6040 8.253810 CCTTCGAAGATCCAGAAGCAATATATA 58.746 37.037 26.61 0.00 39.82 0.86
2257 6041 7.102346 CCTTCGAAGATCCAGAAGCAATATAT 58.898 38.462 26.61 0.00 39.82 0.86
2258 6042 6.042093 ACCTTCGAAGATCCAGAAGCAATATA 59.958 38.462 26.61 0.00 39.82 0.86
2259 6043 5.163258 ACCTTCGAAGATCCAGAAGCAATAT 60.163 40.000 26.61 0.00 39.82 1.28
2295 6080 7.436080 GTGAAGAAACAATTTGCTGATTTCTCA 59.564 33.333 11.10 9.05 38.37 3.27
2327 6113 3.581024 TTTCAAATCCAGCTGACATGC 57.419 42.857 17.39 0.00 0.00 4.06
2364 6158 3.058501 CGCTGAAATTACAGAAAACGGGT 60.059 43.478 0.00 0.00 39.94 5.28
2367 6161 4.768145 TGACGCTGAAATTACAGAAAACG 58.232 39.130 0.00 0.00 39.94 3.60
2394 6188 2.591429 CTGGTTGTGTCAGCGGCA 60.591 61.111 1.45 0.00 0.00 5.69
2406 6200 4.338879 CTGGATTGATGAAGTTCCTGGTT 58.661 43.478 0.00 0.00 0.00 3.67
2419 6213 7.341805 AGTATTACACTTCAAGCTGGATTGAT 58.658 34.615 7.14 0.00 38.90 2.57
2462 6260 3.968265 ACACTTCCCTTCATTGTATGGG 58.032 45.455 0.00 0.00 40.95 4.00
2517 6315 8.352137 AGAATCACCATTTCATGATGTTGTTA 57.648 30.769 0.00 0.00 35.71 2.41
2642 6484 1.751927 GGAGCACTGGGAAGCATGG 60.752 63.158 0.00 0.00 0.00 3.66
2679 6521 6.311690 GTGATAGAGAAGGTGAAAGTTGCTAC 59.688 42.308 0.00 0.00 0.00 3.58
2704 6546 4.259356 TATCTACGAGATATGGGACACCG 58.741 47.826 0.00 0.00 37.38 4.94
2747 6589 0.687920 TGATAAGGACAACCGGCACA 59.312 50.000 0.00 0.00 41.83 4.57
2772 6614 1.961793 TCCTTCACTGAACCCGTTTG 58.038 50.000 0.00 0.00 0.00 2.93
2776 6618 2.543777 TCTTTCCTTCACTGAACCCG 57.456 50.000 0.00 0.00 0.00 5.28
2898 6741 6.550938 AGTCATGTCTTGATGAGATGGTTA 57.449 37.500 5.79 0.00 43.98 2.85
2935 6778 9.102757 GCAACTCTTTATATCATGTTGAAGAGA 57.897 33.333 22.01 9.74 41.45 3.10
2952 6795 5.585390 CAGAGACAACATTTGCAACTCTTT 58.415 37.500 9.96 0.00 37.10 2.52
2953 6796 4.498682 GCAGAGACAACATTTGCAACTCTT 60.499 41.667 9.96 0.00 37.10 2.85
2957 6800 3.082698 TGCAGAGACAACATTTGCAAC 57.917 42.857 0.00 0.00 41.34 4.17
2981 6824 4.589216 TCAGGAAGCACAAATTTCTTGG 57.411 40.909 0.00 0.00 32.95 3.61
3042 6885 7.954835 TGATGCCTTCTATATGAAAAATTGGG 58.045 34.615 0.00 0.00 33.79 4.12
3043 6886 9.635520 GATGATGCCTTCTATATGAAAAATTGG 57.364 33.333 0.00 0.00 33.79 3.16
3052 6895 5.104859 AGCTGGAGATGATGCCTTCTATATG 60.105 44.000 0.00 0.00 0.00 1.78
3153 6996 2.233271 CTCCATGTCTTGTGCAAACCT 58.767 47.619 0.00 0.00 0.00 3.50
3165 7008 7.148239 ACGAAAATATTTTCTGGACTCCATGTC 60.148 37.037 29.17 7.70 43.27 3.06
3189 7032 5.447818 GGCTTGAGGATTGAAACAGATTACG 60.448 44.000 0.00 0.00 0.00 3.18
3195 7038 3.318839 TGTTGGCTTGAGGATTGAAACAG 59.681 43.478 0.00 0.00 0.00 3.16
3196 7039 3.295093 TGTTGGCTTGAGGATTGAAACA 58.705 40.909 0.00 0.00 0.00 2.83
3233 7076 2.431419 TCCAGGTTATCGCCGACAATAA 59.569 45.455 0.00 0.00 0.00 1.40
3278 7121 7.391148 TTGATAGGTTGAAGGAAGTAATTGC 57.609 36.000 0.00 0.00 0.00 3.56
3443 7302 3.942829 TCCAATGTTCCTAGAAGCAGTG 58.057 45.455 0.00 0.00 0.00 3.66
3445 7304 4.154918 GTGTTCCAATGTTCCTAGAAGCAG 59.845 45.833 0.00 0.00 0.00 4.24
3451 7310 3.721087 AGGGTGTTCCAATGTTCCTAG 57.279 47.619 0.00 0.00 38.24 3.02
3594 8855 2.508526 GACCACATTTCTGCAGAAGGT 58.491 47.619 28.71 28.71 35.21 3.50
3685 8947 5.314923 GCCTCTTGCAGTTATGATTCAAA 57.685 39.130 0.00 0.00 40.77 2.69
3700 8963 1.889170 GGAAAGAAACCCTGCCTCTTG 59.111 52.381 0.00 0.00 29.93 3.02
3733 8996 4.873259 TGCGCACTTCTATTTTATAGCACA 59.127 37.500 5.66 0.00 0.00 4.57
3754 9017 1.724623 CAAGCATGCTGATTGTGTTGC 59.275 47.619 23.48 0.00 38.79 4.17
3860 9123 6.590068 AGAGAGATACATTGTTGATTCCCAG 58.410 40.000 0.00 0.00 0.00 4.45
3864 9127 7.279536 TGCTGAAGAGAGATACATTGTTGATTC 59.720 37.037 0.00 0.00 0.00 2.52
3865 9128 7.108194 TGCTGAAGAGAGATACATTGTTGATT 58.892 34.615 0.00 0.00 0.00 2.57
3877 9140 7.124901 TGGATAGTTTTACTGCTGAAGAGAGAT 59.875 37.037 0.00 0.00 0.00 2.75
3897 11062 5.543507 AAGCAGACCAGTATCTTGGATAG 57.456 43.478 0.00 0.00 40.87 2.08
3898 11063 5.163301 GGAAAGCAGACCAGTATCTTGGATA 60.163 44.000 0.00 0.00 40.87 2.59
3903 11068 3.185455 AGGGAAAGCAGACCAGTATCTT 58.815 45.455 0.00 0.00 0.00 2.40
3931 11097 3.181511 CGAGTTTGCCATTATCAGCGAAA 60.182 43.478 0.00 0.00 34.24 3.46
3935 11101 2.288666 TCCGAGTTTGCCATTATCAGC 58.711 47.619 0.00 0.00 0.00 4.26
3941 11107 3.071874 TGAAGATCCGAGTTTGCCATT 57.928 42.857 0.00 0.00 0.00 3.16
3956 11122 5.688220 ATCTCCCTACCTCCTTATGAAGA 57.312 43.478 0.00 0.00 0.00 2.87
3986 11152 4.081697 GGTAGCCAATAGTGCACCAAAAAT 60.082 41.667 14.63 0.00 33.16 1.82
4053 11219 4.454728 TGCACCAAAATTGCTTATCCTC 57.545 40.909 0.00 0.00 40.86 3.71
4103 11269 6.104665 TCAAGAGTGAGAGCATACATCTTTG 58.895 40.000 0.00 0.00 0.00 2.77
4111 11277 8.749354 TGTAAGTTATTCAAGAGTGAGAGCATA 58.251 33.333 0.00 0.00 34.49 3.14
4112 11278 7.615403 TGTAAGTTATTCAAGAGTGAGAGCAT 58.385 34.615 0.00 0.00 34.49 3.79
4165 11331 7.308229 CGATATGGAGGGAATGAAAGATTTGAC 60.308 40.741 0.00 0.00 0.00 3.18
4167 11333 6.488006 ACGATATGGAGGGAATGAAAGATTTG 59.512 38.462 0.00 0.00 0.00 2.32
4242 11408 1.423584 TGGGACTGCCGATGATACAT 58.576 50.000 0.00 0.00 33.83 2.29
4262 11428 3.073798 TCTTCTGTTGCTGGGTTTGGATA 59.926 43.478 0.00 0.00 0.00 2.59
4278 11444 2.939103 GGATCGAACACCCAATCTTCTG 59.061 50.000 0.00 0.00 0.00 3.02
4280 11446 2.939103 CTGGATCGAACACCCAATCTTC 59.061 50.000 0.00 0.00 0.00 2.87
4288 11454 1.810030 GGCGTCTGGATCGAACACC 60.810 63.158 0.00 0.00 0.00 4.16
4330 11496 9.730705 AACTGTCCGATGAATTTATATGATCAT 57.269 29.630 13.81 13.81 35.33 2.45
4332 11498 9.208022 TCAACTGTCCGATGAATTTATATGATC 57.792 33.333 0.00 0.00 0.00 2.92
4366 11532 6.731467 AGGGTCAACATGTACTGGATTAATT 58.269 36.000 0.00 0.00 0.00 1.40
4394 11560 4.937620 GCTTGTGTCTGATCAAACTATCCA 59.062 41.667 0.03 0.00 0.00 3.41
4442 11608 7.720442 TCTTGACATCATCTTCTGGTATACTG 58.280 38.462 2.25 0.00 0.00 2.74
4446 11612 6.485984 GCAATCTTGACATCATCTTCTGGTAT 59.514 38.462 0.00 0.00 0.00 2.73
4449 11615 4.882427 AGCAATCTTGACATCATCTTCTGG 59.118 41.667 0.00 0.00 0.00 3.86
4643 11840 1.160989 GCGATCTGCCGATCTCTCTA 58.839 55.000 15.09 0.00 43.14 2.43
4644 11841 0.821301 TGCGATCTGCCGATCTCTCT 60.821 55.000 15.09 0.00 45.60 3.10
4660 11857 1.062148 CATCATCTGTCAGTTGCTGCG 59.938 52.381 6.09 0.00 0.00 5.18
4679 11876 2.163509 GAGTCCTATCAGCTATCGCCA 58.836 52.381 0.00 0.00 36.60 5.69
4685 11882 3.465742 ACGTACGAGTCCTATCAGCTA 57.534 47.619 24.41 0.00 0.00 3.32
4686 11883 2.328819 ACGTACGAGTCCTATCAGCT 57.671 50.000 24.41 0.00 0.00 4.24
4687 11884 3.120269 CCATACGTACGAGTCCTATCAGC 60.120 52.174 24.41 0.00 0.00 4.26
4688 11885 4.063689 ACCATACGTACGAGTCCTATCAG 58.936 47.826 24.41 5.25 0.00 2.90
4689 11886 3.811497 CACCATACGTACGAGTCCTATCA 59.189 47.826 24.41 0.00 0.00 2.15
4690 11887 3.812053 ACACCATACGTACGAGTCCTATC 59.188 47.826 24.41 0.00 0.00 2.08
4691 11888 3.813443 ACACCATACGTACGAGTCCTAT 58.187 45.455 24.41 5.87 0.00 2.57
4703 11900 5.556382 GCTGATCGTCAAAATACACCATACG 60.556 44.000 0.00 0.00 0.00 3.06
4707 11904 2.670905 CGCTGATCGTCAAAATACACCA 59.329 45.455 0.00 0.00 0.00 4.17
4711 11908 2.927477 TGGTCGCTGATCGTCAAAATAC 59.073 45.455 0.00 0.00 39.67 1.89
4713 11910 2.002586 CTGGTCGCTGATCGTCAAAAT 58.997 47.619 0.00 0.00 39.67 1.82
4820 12017 0.384669 GTGAGACGAAGGGGATACGG 59.615 60.000 0.00 0.00 37.60 4.02
4821 12018 1.065701 CTGTGAGACGAAGGGGATACG 59.934 57.143 0.00 0.00 37.60 3.06
4903 12100 1.686587 CCCATACGCTGAGGATACACA 59.313 52.381 0.00 0.00 41.41 3.72
4921 12118 1.411612 CTAGAACGGGGATACACACCC 59.588 57.143 0.00 0.00 44.36 4.61
4940 12137 2.343484 TCGATGGAGGATACACGTCT 57.657 50.000 0.00 0.00 41.41 4.18
4945 12142 1.272490 GCCGAATCGATGGAGGATACA 59.728 52.381 15.58 0.00 41.41 2.29
4953 12150 0.305617 CATGTGTGCCGAATCGATGG 59.694 55.000 3.36 0.00 0.00 3.51
4999 12196 1.207390 CAAACACCACAAACGGCATG 58.793 50.000 0.00 0.00 0.00 4.06
5037 12234 1.109323 AACTGGGCACTGCTTCAACC 61.109 55.000 0.00 0.00 0.00 3.77
5045 12242 2.297701 ACACAACTAAACTGGGCACTG 58.702 47.619 0.00 0.00 0.00 3.66
5077 12274 6.187682 CCCTTGGAATGAATACCAGTACTTT 58.812 40.000 0.00 0.00 37.48 2.66
5135 12332 2.803030 AGCAGGAATGCTCACAAGAT 57.197 45.000 0.00 0.00 42.12 2.40
5139 12336 5.683681 TCATTAATAGCAGGAATGCTCACA 58.316 37.500 5.93 0.00 45.00 3.58
5141 12338 7.066645 GCATATCATTAATAGCAGGAATGCTCA 59.933 37.037 5.93 0.00 45.00 4.26
5177 12374 5.977129 GGACAAAACAGAAAACACTACCATG 59.023 40.000 0.00 0.00 0.00 3.66
5259 12457 6.109359 ACACAAATATCCTCAGCTCTTGTAC 58.891 40.000 0.00 0.00 0.00 2.90
5300 12502 2.051334 CCATTGGCAGGAATACCGAA 57.949 50.000 0.00 0.00 41.83 4.30
5409 12611 4.401022 TGATGCAGTGAAGAAACCAGAAT 58.599 39.130 0.00 0.00 0.00 2.40
5413 12615 3.890756 ACATTGATGCAGTGAAGAAACCA 59.109 39.130 0.00 0.00 0.00 3.67
5416 12618 6.395426 AAGAACATTGATGCAGTGAAGAAA 57.605 33.333 0.00 0.00 0.00 2.52
5421 12623 7.362315 CCAATAGAAAGAACATTGATGCAGTGA 60.362 37.037 0.00 0.00 32.54 3.41
5427 12629 9.388506 AGTACTCCAATAGAAAGAACATTGATG 57.611 33.333 0.00 0.00 32.54 3.07
5446 12648 4.141937 TGCACCAATGTATCTGAGTACTCC 60.142 45.833 20.11 4.85 0.00 3.85
5449 12651 4.122776 CCTGCACCAATGTATCTGAGTAC 58.877 47.826 0.00 0.00 0.00 2.73
5455 12657 1.635487 ACACCCTGCACCAATGTATCT 59.365 47.619 0.00 0.00 0.00 1.98
5478 12680 2.489275 CCACGTGCCCCCATAATGC 61.489 63.158 10.91 0.00 0.00 3.56
5480 12682 2.123897 GCCACGTGCCCCCATAAT 60.124 61.111 10.91 0.00 0.00 1.28
5492 12694 1.349627 GCGAATGACATGAGCCACG 59.650 57.895 0.00 0.80 0.00 4.94
5500 12702 1.662517 TACAATGGCGCGAATGACAT 58.337 45.000 14.75 1.33 0.00 3.06
5514 12716 7.766278 CGGCTCTTCTAATTATGGCTATACAAT 59.234 37.037 0.00 0.00 0.00 2.71
5515 12717 7.039293 TCGGCTCTTCTAATTATGGCTATACAA 60.039 37.037 0.00 0.00 0.00 2.41
5520 12722 5.801531 TTCGGCTCTTCTAATTATGGCTA 57.198 39.130 0.00 0.00 0.00 3.93
5540 12742 9.997482 TCTCTTACACAAAACACAACTAAATTC 57.003 29.630 0.00 0.00 0.00 2.17
5599 12801 2.844122 ACCGACAAAGTTCAACTTGC 57.156 45.000 2.78 0.00 38.66 4.01
5605 12807 8.989653 AGATTTTTAAAAACCGACAAAGTTCA 57.010 26.923 15.35 0.00 0.00 3.18
5695 12897 3.980646 TTCCCTTCACAATTGTCAACG 57.019 42.857 8.48 0.00 0.00 4.10
5704 12906 0.544120 GGGGCCAATTCCCTTCACAA 60.544 55.000 4.39 0.00 45.80 3.33
5725 12927 6.726258 TGCAATGCCATAATACTATTCTCG 57.274 37.500 1.53 0.00 0.00 4.04
5752 12954 5.220854 GGGTCATGTTGATACACATAAGCAC 60.221 44.000 0.00 0.00 35.51 4.40
5773 12975 9.474313 TCAGAAATTTATTAAATGCTACTGGGT 57.526 29.630 2.48 0.00 0.00 4.51
5798 13000 5.402398 CCAAAACAGGAAGATCGGAAAATC 58.598 41.667 0.00 0.00 0.00 2.17
5814 13016 2.672098 ACACTGGTTATGCCCAAAACA 58.328 42.857 0.00 0.00 33.07 2.83
5815 13017 3.389221 CAACACTGGTTATGCCCAAAAC 58.611 45.455 0.00 0.00 34.87 2.43
5819 13021 3.355077 CCAACACTGGTTATGCCCA 57.645 52.632 0.00 0.00 38.00 5.36
5859 13062 2.165845 AGGATGTAAGTACTCCACGCAC 59.834 50.000 0.00 0.00 0.00 5.34
5874 13077 2.380064 TGGTTTTTGCCTCAGGATGT 57.620 45.000 0.00 0.00 37.40 3.06
5893 13096 7.259088 ACATAATGAGTACTGACCCTTCTTT 57.741 36.000 0.00 0.00 0.00 2.52
5942 13145 2.480802 GTGTGTGTGTGTGTGTGTGTAA 59.519 45.455 0.00 0.00 0.00 2.41
5947 13150 1.660607 GAGAGTGTGTGTGTGTGTGTG 59.339 52.381 0.00 0.00 0.00 3.82
5948 13151 1.550524 AGAGAGTGTGTGTGTGTGTGT 59.449 47.619 0.00 0.00 0.00 3.72
5949 13152 2.159184 AGAGAGAGTGTGTGTGTGTGTG 60.159 50.000 0.00 0.00 0.00 3.82
5950 13153 2.099921 GAGAGAGAGTGTGTGTGTGTGT 59.900 50.000 0.00 0.00 0.00 3.72
5951 13154 2.360483 AGAGAGAGAGTGTGTGTGTGTG 59.640 50.000 0.00 0.00 0.00 3.82
5952 13155 2.621055 GAGAGAGAGAGTGTGTGTGTGT 59.379 50.000 0.00 0.00 0.00 3.72
5953 13156 2.884012 AGAGAGAGAGAGTGTGTGTGTG 59.116 50.000 0.00 0.00 0.00 3.82
5954 13157 3.146066 GAGAGAGAGAGAGTGTGTGTGT 58.854 50.000 0.00 0.00 0.00 3.72
5955 13158 3.411446 AGAGAGAGAGAGAGTGTGTGTG 58.589 50.000 0.00 0.00 0.00 3.82
5956 13159 3.327757 AGAGAGAGAGAGAGAGTGTGTGT 59.672 47.826 0.00 0.00 0.00 3.72
5957 13160 3.935203 GAGAGAGAGAGAGAGAGTGTGTG 59.065 52.174 0.00 0.00 0.00 3.82
5958 13161 3.840666 AGAGAGAGAGAGAGAGAGTGTGT 59.159 47.826 0.00 0.00 0.00 3.72
5959 13162 4.161189 AGAGAGAGAGAGAGAGAGAGTGTG 59.839 50.000 0.00 0.00 0.00 3.82
5960 13163 4.357325 AGAGAGAGAGAGAGAGAGAGTGT 58.643 47.826 0.00 0.00 0.00 3.55
5961 13164 6.493115 AGATAGAGAGAGAGAGAGAGAGAGTG 59.507 46.154 0.00 0.00 0.00 3.51
5962 13165 6.619464 AGATAGAGAGAGAGAGAGAGAGAGT 58.381 44.000 0.00 0.00 0.00 3.24
5963 13166 6.947733 AGAGATAGAGAGAGAGAGAGAGAGAG 59.052 46.154 0.00 0.00 0.00 3.20
5983 13186 0.817634 CCGAGACCAGAGCGAGAGAT 60.818 60.000 0.00 0.00 0.00 2.75
5990 13193 0.680280 TCAGTACCCGAGACCAGAGC 60.680 60.000 0.00 0.00 0.00 4.09
5991 13194 1.096416 GTCAGTACCCGAGACCAGAG 58.904 60.000 0.00 0.00 0.00 3.35
5992 13195 0.697079 AGTCAGTACCCGAGACCAGA 59.303 55.000 0.00 0.00 32.82 3.86
5993 13196 0.811915 CAGTCAGTACCCGAGACCAG 59.188 60.000 0.00 0.00 32.82 4.00
6034 13237 0.257039 GGCTGGTCCCTGTGAATCAT 59.743 55.000 0.00 0.00 0.00 2.45
6058 13261 1.185618 TCCACCCTGTCGAAGTCCAG 61.186 60.000 0.00 0.00 0.00 3.86
6429 13632 1.937223 TCGCACGACATGAACAAAACT 59.063 42.857 0.00 0.00 0.00 2.66
6433 13636 2.139118 TGAATCGCACGACATGAACAA 58.861 42.857 0.00 0.00 0.00 2.83
6434 13637 1.726248 CTGAATCGCACGACATGAACA 59.274 47.619 0.00 0.00 0.00 3.18
6438 13641 1.929169 ACATCTGAATCGCACGACATG 59.071 47.619 0.00 0.00 0.00 3.21
6480 13683 2.299993 TGGCATCGCAAAACAAAACA 57.700 40.000 0.00 0.00 0.00 2.83
6499 13702 2.305635 TGAGACACAACTATGGCCACAT 59.694 45.455 8.16 0.00 41.13 3.21
6503 13706 2.991250 ACATGAGACACAACTATGGCC 58.009 47.619 0.00 0.00 0.00 5.36
6504 13707 4.032900 CGTTACATGAGACACAACTATGGC 59.967 45.833 0.00 0.00 0.00 4.40
6517 13720 4.111375 ACTAGCACTTCCGTTACATGAG 57.889 45.455 0.00 0.00 0.00 2.90
6526 13729 3.457234 TGCATGAATACTAGCACTTCCG 58.543 45.455 0.00 0.00 31.05 4.30
6528 13731 6.092670 TGTTCTTGCATGAATACTAGCACTTC 59.907 38.462 17.04 2.16 36.62 3.01
6529 13732 5.939883 TGTTCTTGCATGAATACTAGCACTT 59.060 36.000 17.04 0.00 36.62 3.16
6531 13734 5.801350 TGTTCTTGCATGAATACTAGCAC 57.199 39.130 17.04 4.44 36.62 4.40
6532 13735 6.375174 ACATTGTTCTTGCATGAATACTAGCA 59.625 34.615 17.04 7.46 34.79 3.49
6533 13736 6.789262 ACATTGTTCTTGCATGAATACTAGC 58.211 36.000 17.04 5.14 0.00 3.42
6536 13739 8.192774 CCATAACATTGTTCTTGCATGAATACT 58.807 33.333 17.04 7.13 0.00 2.12
6537 13740 7.043192 GCCATAACATTGTTCTTGCATGAATAC 60.043 37.037 17.04 7.72 0.00 1.89
6538 13741 6.979817 GCCATAACATTGTTCTTGCATGAATA 59.020 34.615 17.04 12.28 0.00 1.75
6539 13742 5.813672 GCCATAACATTGTTCTTGCATGAAT 59.186 36.000 17.04 4.10 0.00 2.57
6540 13743 5.047164 AGCCATAACATTGTTCTTGCATGAA 60.047 36.000 10.76 10.76 0.00 2.57
6541 13744 4.463539 AGCCATAACATTGTTCTTGCATGA 59.536 37.500 5.07 0.00 0.00 3.07
6542 13745 4.751060 AGCCATAACATTGTTCTTGCATG 58.249 39.130 5.07 4.00 0.00 4.06
6543 13746 4.439153 CGAGCCATAACATTGTTCTTGCAT 60.439 41.667 5.07 0.00 0.00 3.96
6544 13747 3.119884 CGAGCCATAACATTGTTCTTGCA 60.120 43.478 5.07 0.00 0.00 4.08
6545 13748 3.429085 CGAGCCATAACATTGTTCTTGC 58.571 45.455 5.07 4.20 0.00 4.01
6546 13749 3.731867 GCCGAGCCATAACATTGTTCTTG 60.732 47.826 5.07 5.49 0.00 3.02
6600 13803 3.976793 AGCAGCAAATCATCAATACCG 57.023 42.857 0.00 0.00 0.00 4.02
6613 13816 5.506151 GCATTAGCATTACACATAGCAGCAA 60.506 40.000 0.00 0.00 41.58 3.91
6682 13885 1.479709 CCCCAAACAACACCAAGACA 58.520 50.000 0.00 0.00 0.00 3.41
6690 13893 2.666272 TATGACAGCCCCAAACAACA 57.334 45.000 0.00 0.00 0.00 3.33
6742 13945 9.556030 GAATACCGAAAGTTCCATTAAGAAAAG 57.444 33.333 0.00 0.00 0.00 2.27
6752 13955 2.617021 GGCAGGAATACCGAAAGTTCCA 60.617 50.000 6.19 0.00 43.01 3.53
6786 13989 9.692325 AAGATAAAGTTTTCCTTGATGAGCTAT 57.308 29.630 0.00 0.00 32.32 2.97
6808 14011 4.074970 ACAAGAAATGTCTGCCGAAAGAT 58.925 39.130 0.00 0.00 37.96 2.40
6855 14058 3.866883 ACCAAGAATTAACATTGGCGG 57.133 42.857 12.74 0.00 46.05 6.13
6856 14059 5.469479 AGAAACCAAGAATTAACATTGGCG 58.531 37.500 12.74 0.00 46.05 5.69
6890 14093 8.353423 AGTGTATCCAAATAGAAACAGCATTT 57.647 30.769 0.00 0.00 0.00 2.32
6895 14098 7.549134 TGTGCTAGTGTATCCAAATAGAAACAG 59.451 37.037 0.00 0.00 0.00 3.16
6939 14142 1.267532 CGAACGATACAAGCCACATGC 60.268 52.381 0.00 0.00 41.71 4.06
6963 14166 7.012704 ACTCTTCTAATTACGCCTATACGACAA 59.987 37.037 0.00 0.00 36.70 3.18
7024 14227 8.064222 CCGAGACATAACATTGACACAAATATC 58.936 37.037 0.00 0.00 0.00 1.63
7030 14244 3.000041 GCCGAGACATAACATTGACACA 59.000 45.455 0.00 0.00 0.00 3.72
7167 14387 2.038426 TCTCAAGGAGGCATTCGAACAA 59.962 45.455 0.00 0.00 0.00 2.83
7168 14388 1.623311 TCTCAAGGAGGCATTCGAACA 59.377 47.619 0.00 0.00 0.00 3.18
7255 14476 6.693113 GCAAGCTCGGGAAATTAGAAATTTAG 59.307 38.462 0.00 0.00 0.00 1.85
7295 14516 3.377172 ACTTTGTTAGCACCAACACTGAC 59.623 43.478 0.00 0.00 38.12 3.51
7380 14601 9.271828 TGTGCAACATGTATAATAAGATACTGG 57.728 33.333 0.00 0.00 45.67 4.00
7584 14818 8.530311 AGCTCAATAGATACATGAGAGTAATGG 58.470 37.037 0.00 0.00 42.48 3.16
7595 14829 3.262915 GGCCTGGAGCTCAATAGATACAT 59.737 47.826 17.19 0.00 43.05 2.29
7603 14837 0.924823 ATGAAGGCCTGGAGCTCAAT 59.075 50.000 17.19 0.00 43.05 2.57
7604 14838 0.700564 AATGAAGGCCTGGAGCTCAA 59.299 50.000 17.19 2.44 43.05 3.02
7617 14851 7.867909 TCGGACTTAGTCATGCTATAAATGAAG 59.132 37.037 14.72 0.00 35.87 3.02
7621 14855 7.526142 TCTCGGACTTAGTCATGCTATAAAT 57.474 36.000 14.72 0.00 33.68 1.40
7722 14971 8.515695 ACCTAGGTTAAAGCAAATATACAACC 57.484 34.615 9.21 0.00 35.31 3.77
7736 14985 4.105577 TGCCATGAGGTACCTAGGTTAAA 58.894 43.478 22.11 0.00 37.19 1.52
7740 14989 2.439507 CAATGCCATGAGGTACCTAGGT 59.560 50.000 20.57 20.57 37.19 3.08
7794 15043 3.375299 GCAGTATGGTCAGGAACATGTTC 59.625 47.826 27.16 27.16 39.45 3.18
7831 15080 7.700846 TGGTGTAAAATAGGAAACATAGGGAA 58.299 34.615 0.00 0.00 0.00 3.97
7843 15092 7.745620 AGTGAGAAGTTTGGTGTAAAATAGG 57.254 36.000 0.00 0.00 0.00 2.57
7846 15095 7.881775 AGAAGTGAGAAGTTTGGTGTAAAAT 57.118 32.000 0.00 0.00 0.00 1.82
7969 15220 1.466167 CTCCAATGTGCTCCAGAAACG 59.534 52.381 0.00 0.00 0.00 3.60
7979 15230 6.314400 ACATCAAATTAAATGCTCCAATGTGC 59.686 34.615 1.00 0.00 0.00 4.57
7992 15243 8.924511 AGGACTTTCAGAGACATCAAATTAAA 57.075 30.769 0.00 0.00 0.00 1.52
8002 15253 5.825593 ACCAAATAGGACTTTCAGAGACA 57.174 39.130 0.00 0.00 41.22 3.41
8067 15318 4.458295 TGCTTAGAGCTATCCCATACGTAC 59.542 45.833 0.00 0.00 42.97 3.67
8068 15319 4.659115 TGCTTAGAGCTATCCCATACGTA 58.341 43.478 0.00 0.00 42.97 3.57
8076 15327 4.615588 ACTCCATTGCTTAGAGCTATCC 57.384 45.455 1.29 0.00 42.97 2.59
8185 15436 7.414436 ACATGTTTGTAATGCACGATAATACC 58.586 34.615 0.00 0.00 33.16 2.73
8224 15475 9.377312 GCTACATAAGAAGAAGAAGAAGAATGT 57.623 33.333 0.00 0.00 0.00 2.71
8225 15476 9.598517 AGCTACATAAGAAGAAGAAGAAGAATG 57.401 33.333 0.00 0.00 0.00 2.67
8227 15478 8.037758 CCAGCTACATAAGAAGAAGAAGAAGAA 58.962 37.037 0.00 0.00 0.00 2.52
8228 15479 7.397476 TCCAGCTACATAAGAAGAAGAAGAAGA 59.603 37.037 0.00 0.00 0.00 2.87
8229 15480 7.551585 TCCAGCTACATAAGAAGAAGAAGAAG 58.448 38.462 0.00 0.00 0.00 2.85
8250 15501 2.092538 AGGCATCAATCTGTTCCTCCAG 60.093 50.000 0.00 0.00 0.00 3.86
8262 15513 2.243221 ACTTAGGGCTCAAGGCATCAAT 59.757 45.455 5.89 0.00 44.01 2.57
8264 15515 1.289160 ACTTAGGGCTCAAGGCATCA 58.711 50.000 5.89 0.00 44.01 3.07
8274 15525 4.434545 TCGATCACTAGTACTTAGGGCT 57.565 45.455 0.00 0.00 32.48 5.19
8306 15557 2.644299 CAGGGATAACATGGGGCTATGA 59.356 50.000 0.00 0.00 0.00 2.15
8351 15602 5.412594 ACGTTGAGCATTGCCTATATATTGG 59.587 40.000 4.70 8.68 0.00 3.16
8387 15638 2.122167 TTTCCAAACGCGCCCACTT 61.122 52.632 5.73 0.00 0.00 3.16
8397 15648 2.533942 GCGTCACAATGTGTTTCCAAAC 59.466 45.455 13.55 1.33 39.33 2.93
8399 15650 1.066303 GGCGTCACAATGTGTTTCCAA 59.934 47.619 13.55 0.00 34.79 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.