Multiple sequence alignment - TraesCS4B01G008700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G008700 chr4B 100.000 2657 0 0 1 2657 5531009 5533665 0.000000e+00 4907.0
1 TraesCS4B01G008700 chr4B 88.172 186 17 3 185 368 51675715 51675897 1.600000e-52 217.0
2 TraesCS4B01G008700 chrUn 92.836 1326 68 17 580 1902 60942964 60944265 0.000000e+00 1897.0
3 TraesCS4B01G008700 chrUn 91.598 726 44 5 1947 2657 60946298 60947021 0.000000e+00 987.0
4 TraesCS4B01G008700 chrUn 81.760 932 156 8 949 1872 60930697 60931622 0.000000e+00 767.0
5 TraesCS4B01G008700 chrUn 82.947 733 83 24 1958 2657 60954994 60955717 8.080000e-175 623.0
6 TraesCS4B01G008700 chrUn 87.778 180 19 2 188 367 47297937 47298113 9.640000e-50 207.0
7 TraesCS4B01G008700 chrUn 87.778 180 19 2 188 367 47306082 47305906 9.640000e-50 207.0
8 TraesCS4B01G008700 chrUn 87.778 90 10 1 694 782 60928430 60928519 1.300000e-18 104.0
9 TraesCS4B01G008700 chr4A 92.221 1337 60 17 581 1907 601177813 601179115 0.000000e+00 1853.0
10 TraesCS4B01G008700 chr4A 92.559 766 38 6 1910 2657 601179776 601180540 0.000000e+00 1081.0
11 TraesCS4B01G008700 chr4A 89.069 247 18 6 2415 2657 601193811 601194052 5.560000e-77 298.0
12 TraesCS4B01G008700 chr4A 91.195 159 14 0 424 582 244230032 244230190 1.600000e-52 217.0
13 TraesCS4B01G008700 chr4A 90.833 120 10 1 57 175 204180661 204180542 2.740000e-35 159.0
14 TraesCS4B01G008700 chr4A 90.833 120 10 1 57 175 244230028 244230147 2.740000e-35 159.0
15 TraesCS4B01G008700 chr4A 87.000 100 8 4 686 782 601156176 601156273 1.010000e-19 108.0
16 TraesCS4B01G008700 chr4A 97.500 40 0 1 376 415 346685178 346685140 1.710000e-07 67.6
17 TraesCS4B01G008700 chr5D 81.218 969 145 16 706 1660 412448535 412449480 0.000000e+00 747.0
18 TraesCS4B01G008700 chr5D 90.798 163 14 1 424 586 101809762 101809923 1.600000e-52 217.0
19 TraesCS4B01G008700 chr5D 90.833 120 10 1 57 175 101809758 101809877 2.740000e-35 159.0
20 TraesCS4B01G008700 chr5B 80.392 969 155 15 706 1660 496549454 496550401 0.000000e+00 704.0
21 TraesCS4B01G008700 chr5B 79.550 978 150 20 706 1660 496805754 496806704 0.000000e+00 652.0
22 TraesCS4B01G008700 chr5B 82.810 669 108 4 997 1660 496569423 496570089 2.280000e-165 592.0
23 TraesCS4B01G008700 chr5B 89.011 182 15 4 188 368 564185832 564185655 1.240000e-53 220.0
24 TraesCS4B01G008700 chr5A 82.243 749 108 13 970 1710 524309363 524310094 8.080000e-175 623.0
25 TraesCS4B01G008700 chr5A 78.763 970 148 26 706 1660 524389009 524389935 4.900000e-167 597.0
26 TraesCS4B01G008700 chr5A 90.303 165 11 5 424 586 422444307 422444468 7.450000e-51 211.0
27 TraesCS4B01G008700 chr5A 76.577 222 32 9 646 852 524309070 524309286 1.300000e-18 104.0
28 TraesCS4B01G008700 chr7D 89.247 186 17 2 188 373 49663493 49663675 2.060000e-56 230.0
29 TraesCS4B01G008700 chr7D 91.824 159 12 1 424 582 382733801 382733644 1.240000e-53 220.0
30 TraesCS4B01G008700 chr7D 90.244 123 11 1 53 175 382733808 382733687 2.740000e-35 159.0
31 TraesCS4B01G008700 chr3D 91.411 163 13 1 424 586 338164262 338164423 3.440000e-54 222.0
32 TraesCS4B01G008700 chr3D 90.833 120 10 1 57 175 338164258 338164377 2.740000e-35 159.0
33 TraesCS4B01G008700 chr3D 97.674 43 0 1 373 414 360568763 360568721 3.670000e-09 73.1
34 TraesCS4B01G008700 chr1A 88.235 187 20 2 188 373 586743949 586743764 3.440000e-54 222.0
35 TraesCS4B01G008700 chr2B 90.798 163 15 0 424 586 512624245 512624083 4.450000e-53 219.0
36 TraesCS4B01G008700 chr7A 88.043 184 19 2 185 368 732805592 732805772 5.760000e-52 215.0
37 TraesCS4B01G008700 chr6A 90.184 163 16 0 424 586 216194221 216194059 2.070000e-51 213.0
38 TraesCS4B01G008700 chr7B 87.302 189 19 3 188 374 639505002 639504817 7.450000e-51 211.0
39 TraesCS4B01G008700 chr7B 90.566 159 15 0 424 582 695503338 695503180 7.450000e-51 211.0
40 TraesCS4B01G008700 chr7B 97.561 41 1 0 374 414 673438195 673438155 1.320000e-08 71.3
41 TraesCS4B01G008700 chr1D 90.184 163 15 1 424 586 207810724 207810885 7.450000e-51 211.0
42 TraesCS4B01G008700 chr1D 90.833 120 10 1 57 175 216825081 216825200 2.740000e-35 159.0
43 TraesCS4B01G008700 chr1D 100.000 38 0 0 373 410 9267315 9267352 1.320000e-08 71.3
44 TraesCS4B01G008700 chr3A 86.772 189 19 5 188 373 684643458 684643643 3.470000e-49 206.0
45 TraesCS4B01G008700 chr3A 91.667 120 9 1 57 175 343808677 343808558 5.880000e-37 165.0
46 TraesCS4B01G008700 chr2D 91.667 120 9 1 57 175 476515147 476515266 5.880000e-37 165.0
47 TraesCS4B01G008700 chr2A 90.833 120 10 1 57 175 245782483 245782602 2.740000e-35 159.0
48 TraesCS4B01G008700 chr4D 97.674 43 0 1 373 415 386984717 386984676 3.670000e-09 73.1
49 TraesCS4B01G008700 chr4D 100.000 38 0 0 373 410 455326552 455326589 1.320000e-08 71.3
50 TraesCS4B01G008700 chr3B 100.000 39 0 0 372 410 5745738 5745776 3.670000e-09 73.1
51 TraesCS4B01G008700 chr3B 95.349 43 1 1 373 415 526693578 526693537 1.710000e-07 67.6
52 TraesCS4B01G008700 chr6B 97.500 40 0 1 376 415 644487864 644487826 1.710000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G008700 chr4B 5531009 5533665 2656 False 4907.0 4907 100.000 1 2657 1 chr4B.!!$F1 2656
1 TraesCS4B01G008700 chrUn 60942964 60947021 4057 False 1442.0 1897 92.217 580 2657 2 chrUn.!!$F4 2077
2 TraesCS4B01G008700 chrUn 60954994 60955717 723 False 623.0 623 82.947 1958 2657 1 chrUn.!!$F2 699
3 TraesCS4B01G008700 chrUn 60928430 60931622 3192 False 435.5 767 84.769 694 1872 2 chrUn.!!$F3 1178
4 TraesCS4B01G008700 chr4A 601177813 601180540 2727 False 1467.0 1853 92.390 581 2657 2 chr4A.!!$F4 2076
5 TraesCS4B01G008700 chr5D 412448535 412449480 945 False 747.0 747 81.218 706 1660 1 chr5D.!!$F1 954
6 TraesCS4B01G008700 chr5B 496549454 496550401 947 False 704.0 704 80.392 706 1660 1 chr5B.!!$F1 954
7 TraesCS4B01G008700 chr5B 496805754 496806704 950 False 652.0 652 79.550 706 1660 1 chr5B.!!$F3 954
8 TraesCS4B01G008700 chr5B 496569423 496570089 666 False 592.0 592 82.810 997 1660 1 chr5B.!!$F2 663
9 TraesCS4B01G008700 chr5A 524389009 524389935 926 False 597.0 597 78.763 706 1660 1 chr5A.!!$F2 954
10 TraesCS4B01G008700 chr5A 524309070 524310094 1024 False 363.5 623 79.410 646 1710 2 chr5A.!!$F3 1064

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 438 0.323629 CCGTGCCCTCTGTTCCTAAA 59.676 55.0 0.0 0.0 0.0 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2398 6820 1.670811 GAAGGCACCGATGTTGTATGG 59.329 52.381 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.499037 GCCATCGTTGTTTCCTAAGTTT 57.501 40.909 0.00 0.00 0.00 2.66
22 23 4.473199 GCCATCGTTGTTTCCTAAGTTTC 58.527 43.478 0.00 0.00 0.00 2.78
23 24 4.023536 GCCATCGTTGTTTCCTAAGTTTCA 60.024 41.667 0.00 0.00 0.00 2.69
24 25 5.449304 CCATCGTTGTTTCCTAAGTTTCAC 58.551 41.667 0.00 0.00 0.00 3.18
25 26 5.008217 CCATCGTTGTTTCCTAAGTTTCACA 59.992 40.000 0.00 0.00 0.00 3.58
26 27 5.728351 TCGTTGTTTCCTAAGTTTCACAG 57.272 39.130 0.00 0.00 0.00 3.66
27 28 4.573201 TCGTTGTTTCCTAAGTTTCACAGG 59.427 41.667 0.00 0.00 0.00 4.00
28 29 4.334481 CGTTGTTTCCTAAGTTTCACAGGT 59.666 41.667 0.00 0.00 0.00 4.00
29 30 5.578776 GTTGTTTCCTAAGTTTCACAGGTG 58.421 41.667 0.00 0.00 0.00 4.00
30 31 5.105567 TGTTTCCTAAGTTTCACAGGTGA 57.894 39.130 0.00 0.00 37.91 4.02
31 32 5.690865 TGTTTCCTAAGTTTCACAGGTGAT 58.309 37.500 2.52 0.00 39.64 3.06
32 33 6.833041 TGTTTCCTAAGTTTCACAGGTGATA 58.167 36.000 2.52 0.00 39.64 2.15
33 34 7.458397 TGTTTCCTAAGTTTCACAGGTGATAT 58.542 34.615 2.52 0.00 39.64 1.63
34 35 8.598916 TGTTTCCTAAGTTTCACAGGTGATATA 58.401 33.333 2.52 0.00 39.64 0.86
35 36 8.880750 GTTTCCTAAGTTTCACAGGTGATATAC 58.119 37.037 2.52 2.94 39.64 1.47
36 37 7.727578 TCCTAAGTTTCACAGGTGATATACA 57.272 36.000 2.52 0.00 39.64 2.29
54 55 2.975410 CACGTTTGTGCTCATGTCAT 57.025 45.000 0.00 0.00 39.67 3.06
56 57 4.604843 CACGTTTGTGCTCATGTCATAT 57.395 40.909 0.00 0.00 39.67 1.78
57 58 5.717038 CACGTTTGTGCTCATGTCATATA 57.283 39.130 0.00 0.00 39.67 0.86
58 59 5.492854 CACGTTTGTGCTCATGTCATATAC 58.507 41.667 0.00 0.00 39.67 1.47
59 60 5.291858 CACGTTTGTGCTCATGTCATATACT 59.708 40.000 0.00 0.00 39.67 2.12
60 61 5.520288 ACGTTTGTGCTCATGTCATATACTC 59.480 40.000 0.00 0.00 0.00 2.59
61 62 5.050769 CGTTTGTGCTCATGTCATATACTCC 60.051 44.000 0.00 0.00 0.00 3.85
62 63 4.607293 TGTGCTCATGTCATATACTCCC 57.393 45.455 0.00 0.00 0.00 4.30
63 64 4.226384 TGTGCTCATGTCATATACTCCCT 58.774 43.478 0.00 0.00 0.00 4.20
64 65 4.281941 TGTGCTCATGTCATATACTCCCTC 59.718 45.833 0.00 0.00 0.00 4.30
65 66 4.526262 GTGCTCATGTCATATACTCCCTCT 59.474 45.833 0.00 0.00 0.00 3.69
66 67 4.525874 TGCTCATGTCATATACTCCCTCTG 59.474 45.833 0.00 0.00 0.00 3.35
67 68 4.620332 GCTCATGTCATATACTCCCTCTGC 60.620 50.000 0.00 0.00 0.00 4.26
68 69 4.745351 TCATGTCATATACTCCCTCTGCT 58.255 43.478 0.00 0.00 0.00 4.24
69 70 4.769488 TCATGTCATATACTCCCTCTGCTC 59.231 45.833 0.00 0.00 0.00 4.26
70 71 3.501349 TGTCATATACTCCCTCTGCTCC 58.499 50.000 0.00 0.00 0.00 4.70
71 72 3.141083 TGTCATATACTCCCTCTGCTCCT 59.859 47.826 0.00 0.00 0.00 3.69
72 73 4.354087 TGTCATATACTCCCTCTGCTCCTA 59.646 45.833 0.00 0.00 0.00 2.94
73 74 5.162980 TGTCATATACTCCCTCTGCTCCTAA 60.163 44.000 0.00 0.00 0.00 2.69
74 75 5.775701 GTCATATACTCCCTCTGCTCCTAAA 59.224 44.000 0.00 0.00 0.00 1.85
75 76 6.439058 GTCATATACTCCCTCTGCTCCTAAAT 59.561 42.308 0.00 0.00 0.00 1.40
76 77 7.616150 GTCATATACTCCCTCTGCTCCTAAATA 59.384 40.741 0.00 0.00 0.00 1.40
77 78 8.347591 TCATATACTCCCTCTGCTCCTAAATAT 58.652 37.037 0.00 0.00 0.00 1.28
78 79 9.647918 CATATACTCCCTCTGCTCCTAAATATA 57.352 37.037 0.00 0.00 0.00 0.86
80 81 6.926630 ACTCCCTCTGCTCCTAAATATAAG 57.073 41.667 0.00 0.00 0.00 1.73
81 82 6.386284 ACTCCCTCTGCTCCTAAATATAAGT 58.614 40.000 0.00 0.00 0.00 2.24
82 83 6.268847 ACTCCCTCTGCTCCTAAATATAAGTG 59.731 42.308 0.00 0.00 0.00 3.16
83 84 6.143915 TCCCTCTGCTCCTAAATATAAGTGT 58.856 40.000 0.00 0.00 0.00 3.55
84 85 6.615726 TCCCTCTGCTCCTAAATATAAGTGTT 59.384 38.462 0.00 0.00 0.00 3.32
85 86 7.127339 TCCCTCTGCTCCTAAATATAAGTGTTT 59.873 37.037 0.00 0.00 0.00 2.83
86 87 7.775561 CCCTCTGCTCCTAAATATAAGTGTTTT 59.224 37.037 0.00 0.00 0.00 2.43
87 88 9.178758 CCTCTGCTCCTAAATATAAGTGTTTTT 57.821 33.333 0.00 0.00 0.00 1.94
124 125 9.797642 ATATGAACTACATATGGAGCAAAATGA 57.202 29.630 15.30 0.00 46.54 2.57
125 126 7.558161 TGAACTACATATGGAGCAAAATGAG 57.442 36.000 15.30 0.00 0.00 2.90
126 127 7.112122 TGAACTACATATGGAGCAAAATGAGT 58.888 34.615 15.30 0.00 0.00 3.41
127 128 6.932356 ACTACATATGGAGCAAAATGAGTG 57.068 37.500 15.30 0.00 0.00 3.51
128 129 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
129 130 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
130 131 6.199937 ACATATGGAGCAAAATGAGTGAAC 57.800 37.500 7.80 0.00 0.00 3.18
131 132 5.126061 ACATATGGAGCAAAATGAGTGAACC 59.874 40.000 7.80 0.00 0.00 3.62
132 133 3.228188 TGGAGCAAAATGAGTGAACCT 57.772 42.857 0.00 0.00 0.00 3.50
133 134 4.365514 TGGAGCAAAATGAGTGAACCTA 57.634 40.909 0.00 0.00 0.00 3.08
134 135 4.072131 TGGAGCAAAATGAGTGAACCTAC 58.928 43.478 0.00 0.00 0.00 3.18
135 136 4.072131 GGAGCAAAATGAGTGAACCTACA 58.928 43.478 0.00 0.00 0.00 2.74
136 137 4.083271 GGAGCAAAATGAGTGAACCTACAC 60.083 45.833 0.00 0.00 40.60 2.90
147 148 6.251655 AGTGAACCTACACTCTAAACTACG 57.748 41.667 0.00 0.00 46.36 3.51
148 149 5.767168 AGTGAACCTACACTCTAAACTACGT 59.233 40.000 0.00 0.00 46.36 3.57
149 150 6.264067 AGTGAACCTACACTCTAAACTACGTT 59.736 38.462 0.00 0.00 46.36 3.99
150 151 6.920210 GTGAACCTACACTCTAAACTACGTTT 59.080 38.462 0.00 0.00 37.38 3.60
151 152 8.076178 GTGAACCTACACTCTAAACTACGTTTA 58.924 37.037 0.00 0.01 36.29 2.01
152 153 8.796475 TGAACCTACACTCTAAACTACGTTTAT 58.204 33.333 0.00 0.00 37.37 1.40
171 172 8.454106 ACGTTTATATATGTCCGTATGTAGTCC 58.546 37.037 0.00 0.00 0.00 3.85
172 173 8.453320 CGTTTATATATGTCCGTATGTAGTCCA 58.547 37.037 0.00 0.00 0.00 4.02
178 179 5.959618 TGTCCGTATGTAGTCCATATCTG 57.040 43.478 0.00 0.00 38.29 2.90
179 180 5.382616 TGTCCGTATGTAGTCCATATCTGT 58.617 41.667 0.00 0.00 38.29 3.41
180 181 6.536447 TGTCCGTATGTAGTCCATATCTGTA 58.464 40.000 0.00 0.00 38.29 2.74
181 182 7.173032 TGTCCGTATGTAGTCCATATCTGTAT 58.827 38.462 0.00 0.00 38.29 2.29
182 183 7.668469 TGTCCGTATGTAGTCCATATCTGTATT 59.332 37.037 0.00 0.00 38.29 1.89
183 184 8.521176 GTCCGTATGTAGTCCATATCTGTATTT 58.479 37.037 0.00 0.00 38.29 1.40
184 185 9.085645 TCCGTATGTAGTCCATATCTGTATTTT 57.914 33.333 0.00 0.00 38.29 1.82
185 186 9.140286 CCGTATGTAGTCCATATCTGTATTTTG 57.860 37.037 0.00 0.00 38.29 2.44
186 187 9.908152 CGTATGTAGTCCATATCTGTATTTTGA 57.092 33.333 0.00 0.00 38.29 2.69
193 194 8.840321 AGTCCATATCTGTATTTTGAATTTCGG 58.160 33.333 0.00 0.00 0.00 4.30
194 195 7.591426 GTCCATATCTGTATTTTGAATTTCGGC 59.409 37.037 0.00 0.00 0.00 5.54
195 196 6.863126 CCATATCTGTATTTTGAATTTCGGCC 59.137 38.462 0.00 0.00 0.00 6.13
196 197 4.349663 TCTGTATTTTGAATTTCGGCCG 57.650 40.909 22.12 22.12 0.00 6.13
197 198 4.004314 TCTGTATTTTGAATTTCGGCCGA 58.996 39.130 27.28 27.28 0.00 5.54
198 199 4.456222 TCTGTATTTTGAATTTCGGCCGAA 59.544 37.500 35.81 35.81 0.00 4.30
199 200 5.124776 TCTGTATTTTGAATTTCGGCCGAAT 59.875 36.000 38.89 26.73 33.79 3.34
200 201 5.715070 TGTATTTTGAATTTCGGCCGAATT 58.285 33.333 38.89 31.79 33.79 2.17
201 202 6.159988 TGTATTTTGAATTTCGGCCGAATTT 58.840 32.000 38.89 37.01 33.79 1.82
202 203 5.778161 ATTTTGAATTTCGGCCGAATTTC 57.222 34.783 41.52 41.52 41.25 2.17
203 204 2.535934 TGAATTTCGGCCGAATTTCG 57.464 45.000 41.19 17.36 42.55 3.46
213 214 1.934463 CGAATTTCGGCCATCTCGG 59.066 57.895 10.95 0.00 36.00 4.63
235 236 2.880890 CCTGGGGCAAAATCTATCTTCG 59.119 50.000 0.00 0.00 0.00 3.79
236 237 3.433598 CCTGGGGCAAAATCTATCTTCGA 60.434 47.826 0.00 0.00 0.00 3.71
237 238 3.541632 TGGGGCAAAATCTATCTTCGAC 58.458 45.455 0.00 0.00 0.00 4.20
238 239 2.879026 GGGGCAAAATCTATCTTCGACC 59.121 50.000 0.00 0.00 0.00 4.79
239 240 2.544267 GGGCAAAATCTATCTTCGACCG 59.456 50.000 0.00 0.00 0.00 4.79
240 241 3.454375 GGCAAAATCTATCTTCGACCGA 58.546 45.455 0.00 0.00 0.00 4.69
241 242 3.869246 GGCAAAATCTATCTTCGACCGAA 59.131 43.478 4.72 4.72 0.00 4.30
242 243 4.331717 GGCAAAATCTATCTTCGACCGAAA 59.668 41.667 6.32 0.00 33.34 3.46
243 244 5.007724 GGCAAAATCTATCTTCGACCGAAAT 59.992 40.000 6.32 5.90 33.34 2.17
244 245 6.458342 GGCAAAATCTATCTTCGACCGAAATT 60.458 38.462 6.32 0.63 33.34 1.82
245 246 6.412072 GCAAAATCTATCTTCGACCGAAATTG 59.588 38.462 6.32 4.97 33.34 2.32
246 247 6.604735 AAATCTATCTTCGACCGAAATTGG 57.395 37.500 6.32 0.00 33.34 3.16
289 290 7.245419 AGTCAAATTTCGGTCAAAATTTTGG 57.755 32.000 26.45 13.59 43.05 3.28
290 291 5.906838 GTCAAATTTCGGTCAAAATTTTGGC 59.093 36.000 26.45 25.34 43.05 4.52
306 307 8.939201 AAATTTTGGCCGAAATTTTTGAAAAT 57.061 23.077 35.89 20.62 43.17 1.82
307 308 7.927305 ATTTTGGCCGAAATTTTTGAAAATG 57.073 28.000 23.22 0.00 38.53 2.32
308 309 6.683974 TTTGGCCGAAATTTTTGAAAATGA 57.316 29.167 1.75 0.00 38.53 2.57
309 310 5.665381 TGGCCGAAATTTTTGAAAATGAC 57.335 34.783 0.00 0.81 38.53 3.06
310 311 4.513318 TGGCCGAAATTTTTGAAAATGACC 59.487 37.500 0.00 2.34 38.53 4.02
311 312 4.376920 GGCCGAAATTTTTGAAAATGACCG 60.377 41.667 2.71 6.75 38.53 4.79
312 313 4.446051 GCCGAAATTTTTGAAAATGACCGA 59.554 37.500 14.15 0.00 38.53 4.69
313 314 5.050702 GCCGAAATTTTTGAAAATGACCGAA 60.051 36.000 14.15 0.00 38.53 4.30
314 315 6.510317 GCCGAAATTTTTGAAAATGACCGAAA 60.510 34.615 14.15 0.00 38.53 3.46
315 316 7.571892 CCGAAATTTTTGAAAATGACCGAAAT 58.428 30.769 14.15 0.00 38.53 2.17
316 317 8.067189 CCGAAATTTTTGAAAATGACCGAAATT 58.933 29.630 14.15 0.00 38.53 1.82
317 318 9.091255 CGAAATTTTTGAAAATGACCGAAATTC 57.909 29.630 2.71 0.94 38.53 2.17
318 319 8.986039 AAATTTTTGAAAATGACCGAAATTCG 57.014 26.923 8.62 8.62 38.53 3.34
328 329 3.924238 CGAAATTCGGCCATCTTGG 57.076 52.632 7.61 0.00 41.55 3.61
369 370 9.838975 AAAATCTCAAACCAAAAATCAAAACAC 57.161 25.926 0.00 0.00 0.00 3.32
370 371 8.558973 AATCTCAAACCAAAAATCAAAACACA 57.441 26.923 0.00 0.00 0.00 3.72
371 372 7.593875 TCTCAAACCAAAAATCAAAACACAG 57.406 32.000 0.00 0.00 0.00 3.66
372 373 6.593382 TCTCAAACCAAAAATCAAAACACAGG 59.407 34.615 0.00 0.00 0.00 4.00
373 374 6.234177 TCAAACCAAAAATCAAAACACAGGT 58.766 32.000 0.00 0.00 0.00 4.00
374 375 6.370166 TCAAACCAAAAATCAAAACACAGGTC 59.630 34.615 0.00 0.00 0.00 3.85
375 376 4.765273 ACCAAAAATCAAAACACAGGTCC 58.235 39.130 0.00 0.00 0.00 4.46
376 377 4.223923 ACCAAAAATCAAAACACAGGTCCA 59.776 37.500 0.00 0.00 0.00 4.02
377 378 5.104569 ACCAAAAATCAAAACACAGGTCCAT 60.105 36.000 0.00 0.00 0.00 3.41
378 379 6.098982 ACCAAAAATCAAAACACAGGTCCATA 59.901 34.615 0.00 0.00 0.00 2.74
379 380 7.160726 CCAAAAATCAAAACACAGGTCCATAT 58.839 34.615 0.00 0.00 0.00 1.78
380 381 7.661027 CCAAAAATCAAAACACAGGTCCATATT 59.339 33.333 0.00 0.00 0.00 1.28
381 382 8.497554 CAAAAATCAAAACACAGGTCCATATTG 58.502 33.333 0.00 0.00 0.00 1.90
382 383 7.537596 AAATCAAAACACAGGTCCATATTGA 57.462 32.000 0.00 0.00 0.00 2.57
383 384 7.537596 AATCAAAACACAGGTCCATATTGAA 57.462 32.000 0.00 0.00 0.00 2.69
384 385 6.968263 TCAAAACACAGGTCCATATTGAAA 57.032 33.333 0.00 0.00 0.00 2.69
385 386 7.537596 TCAAAACACAGGTCCATATTGAAAT 57.462 32.000 0.00 0.00 0.00 2.17
386 387 7.601856 TCAAAACACAGGTCCATATTGAAATC 58.398 34.615 0.00 0.00 0.00 2.17
387 388 7.451255 TCAAAACACAGGTCCATATTGAAATCT 59.549 33.333 0.00 0.00 0.00 2.40
388 389 7.396540 AAACACAGGTCCATATTGAAATCTC 57.603 36.000 0.00 0.00 0.00 2.75
389 390 6.319048 ACACAGGTCCATATTGAAATCTCT 57.681 37.500 0.00 0.00 0.00 3.10
390 391 7.437713 ACACAGGTCCATATTGAAATCTCTA 57.562 36.000 0.00 0.00 0.00 2.43
391 392 7.861629 ACACAGGTCCATATTGAAATCTCTAA 58.138 34.615 0.00 0.00 0.00 2.10
392 393 8.328758 ACACAGGTCCATATTGAAATCTCTAAA 58.671 33.333 0.00 0.00 0.00 1.85
393 394 9.177608 CACAGGTCCATATTGAAATCTCTAAAA 57.822 33.333 0.00 0.00 0.00 1.52
394 395 9.753674 ACAGGTCCATATTGAAATCTCTAAAAA 57.246 29.630 0.00 0.00 0.00 1.94
415 416 8.982091 AAAAAGACTTATATTTAGGAGAGGGC 57.018 34.615 0.00 0.00 0.00 5.19
416 417 6.689663 AAGACTTATATTTAGGAGAGGGCC 57.310 41.667 0.00 0.00 0.00 5.80
417 418 5.983608 AGACTTATATTTAGGAGAGGGCCT 58.016 41.667 5.25 5.25 42.15 5.19
418 419 6.020389 AGACTTATATTTAGGAGAGGGCCTC 58.980 44.000 26.42 26.42 39.50 4.70
431 432 4.021925 GCCTCCGTGCCCTCTGTT 62.022 66.667 0.00 0.00 0.00 3.16
432 433 2.266055 CCTCCGTGCCCTCTGTTC 59.734 66.667 0.00 0.00 0.00 3.18
433 434 2.266055 CTCCGTGCCCTCTGTTCC 59.734 66.667 0.00 0.00 0.00 3.62
434 435 2.203788 TCCGTGCCCTCTGTTCCT 60.204 61.111 0.00 0.00 0.00 3.36
435 436 0.970937 CTCCGTGCCCTCTGTTCCTA 60.971 60.000 0.00 0.00 0.00 2.94
436 437 0.543410 TCCGTGCCCTCTGTTCCTAA 60.543 55.000 0.00 0.00 0.00 2.69
437 438 0.323629 CCGTGCCCTCTGTTCCTAAA 59.676 55.000 0.00 0.00 0.00 1.85
438 439 1.065418 CCGTGCCCTCTGTTCCTAAAT 60.065 52.381 0.00 0.00 0.00 1.40
439 440 2.169769 CCGTGCCCTCTGTTCCTAAATA 59.830 50.000 0.00 0.00 0.00 1.40
440 441 3.181454 CCGTGCCCTCTGTTCCTAAATAT 60.181 47.826 0.00 0.00 0.00 1.28
441 442 4.039973 CCGTGCCCTCTGTTCCTAAATATA 59.960 45.833 0.00 0.00 0.00 0.86
442 443 5.454187 CCGTGCCCTCTGTTCCTAAATATAA 60.454 44.000 0.00 0.00 0.00 0.98
443 444 5.696724 CGTGCCCTCTGTTCCTAAATATAAG 59.303 44.000 0.00 0.00 0.00 1.73
444 445 6.592870 GTGCCCTCTGTTCCTAAATATAAGT 58.407 40.000 0.00 0.00 0.00 2.24
445 446 6.483640 GTGCCCTCTGTTCCTAAATATAAGTG 59.516 42.308 0.00 0.00 0.00 3.16
446 447 6.157994 TGCCCTCTGTTCCTAAATATAAGTGT 59.842 38.462 0.00 0.00 0.00 3.55
447 448 7.054751 GCCCTCTGTTCCTAAATATAAGTGTT 58.945 38.462 0.00 0.00 0.00 3.32
448 449 7.556635 GCCCTCTGTTCCTAAATATAAGTGTTT 59.443 37.037 0.00 0.00 0.00 2.83
449 450 9.462606 CCCTCTGTTCCTAAATATAAGTGTTTT 57.537 33.333 0.00 0.00 0.00 2.43
472 473 6.515272 TTTGAGATTTCAATAAGGGACTGC 57.485 37.500 0.00 0.00 42.60 4.40
473 474 5.178096 TGAGATTTCAATAAGGGACTGCA 57.822 39.130 0.00 0.00 40.86 4.41
474 475 5.759059 TGAGATTTCAATAAGGGACTGCAT 58.241 37.500 0.00 0.00 40.86 3.96
475 476 6.899089 TGAGATTTCAATAAGGGACTGCATA 58.101 36.000 0.00 0.00 40.86 3.14
476 477 6.994496 TGAGATTTCAATAAGGGACTGCATAG 59.006 38.462 0.00 0.00 40.86 2.23
477 478 7.141758 AGATTTCAATAAGGGACTGCATAGA 57.858 36.000 0.00 0.00 40.86 1.98
478 479 7.222872 AGATTTCAATAAGGGACTGCATAGAG 58.777 38.462 0.00 0.00 40.86 2.43
479 480 6.560003 TTTCAATAAGGGACTGCATAGAGA 57.440 37.500 0.00 0.00 40.86 3.10
480 481 5.798125 TCAATAAGGGACTGCATAGAGAG 57.202 43.478 0.00 0.00 40.86 3.20
481 482 4.039730 TCAATAAGGGACTGCATAGAGAGC 59.960 45.833 0.00 0.00 40.86 4.09
482 483 1.871418 AAGGGACTGCATAGAGAGCA 58.129 50.000 0.00 0.00 40.86 4.26
483 484 1.871418 AGGGACTGCATAGAGAGCAA 58.129 50.000 0.00 0.00 42.17 3.91
484 485 2.191400 AGGGACTGCATAGAGAGCAAA 58.809 47.619 0.00 0.00 42.17 3.68
485 486 2.573462 AGGGACTGCATAGAGAGCAAAA 59.427 45.455 0.00 0.00 42.17 2.44
486 487 3.201708 AGGGACTGCATAGAGAGCAAAAT 59.798 43.478 0.00 0.00 42.17 1.82
487 488 3.314635 GGGACTGCATAGAGAGCAAAATG 59.685 47.826 0.00 0.00 42.17 2.32
488 489 4.194640 GGACTGCATAGAGAGCAAAATGA 58.805 43.478 0.00 0.00 42.17 2.57
489 490 4.272991 GGACTGCATAGAGAGCAAAATGAG 59.727 45.833 0.00 0.00 42.17 2.90
490 491 4.841422 ACTGCATAGAGAGCAAAATGAGT 58.159 39.130 0.00 0.00 42.17 3.41
491 492 4.874966 ACTGCATAGAGAGCAAAATGAGTC 59.125 41.667 0.00 0.00 42.17 3.36
492 493 4.835678 TGCATAGAGAGCAAAATGAGTCA 58.164 39.130 0.00 0.00 39.39 3.41
493 494 5.247862 TGCATAGAGAGCAAAATGAGTCAA 58.752 37.500 0.00 0.00 39.39 3.18
494 495 5.122869 TGCATAGAGAGCAAAATGAGTCAAC 59.877 40.000 0.00 0.00 39.39 3.18
495 496 5.448360 GCATAGAGAGCAAAATGAGTCAACC 60.448 44.000 0.00 0.00 0.00 3.77
496 497 4.363991 AGAGAGCAAAATGAGTCAACCT 57.636 40.909 0.00 0.00 0.00 3.50
497 498 5.489792 AGAGAGCAAAATGAGTCAACCTA 57.510 39.130 0.00 0.00 0.00 3.08
498 499 5.241662 AGAGAGCAAAATGAGTCAACCTAC 58.758 41.667 0.00 0.00 0.00 3.18
499 500 4.973168 AGAGCAAAATGAGTCAACCTACA 58.027 39.130 0.00 0.00 0.00 2.74
500 501 4.757149 AGAGCAAAATGAGTCAACCTACAC 59.243 41.667 0.00 0.00 0.00 2.90
501 502 4.718961 AGCAAAATGAGTCAACCTACACT 58.281 39.130 0.00 0.00 0.00 3.55
502 503 5.865085 AGCAAAATGAGTCAACCTACACTA 58.135 37.500 0.00 0.00 0.00 2.74
503 504 6.476378 AGCAAAATGAGTCAACCTACACTAT 58.524 36.000 0.00 0.00 0.00 2.12
504 505 7.620880 AGCAAAATGAGTCAACCTACACTATA 58.379 34.615 0.00 0.00 0.00 1.31
505 506 8.100791 AGCAAAATGAGTCAACCTACACTATAA 58.899 33.333 0.00 0.00 0.00 0.98
506 507 8.726988 GCAAAATGAGTCAACCTACACTATAAA 58.273 33.333 0.00 0.00 0.00 1.40
512 513 9.305555 TGAGTCAACCTACACTATAAACTAAGT 57.694 33.333 0.00 0.00 0.00 2.24
513 514 9.786105 GAGTCAACCTACACTATAAACTAAGTC 57.214 37.037 0.00 0.00 0.00 3.01
514 515 9.531158 AGTCAACCTACACTATAAACTAAGTCT 57.469 33.333 0.00 0.00 0.00 3.24
540 541 3.305720 ACATCCGTATGTAGTCCATGGT 58.694 45.455 12.58 0.00 44.66 3.55
541 542 3.069586 ACATCCGTATGTAGTCCATGGTG 59.930 47.826 12.58 0.00 44.66 4.17
542 543 3.021177 TCCGTATGTAGTCCATGGTGA 57.979 47.619 12.58 0.00 34.86 4.02
543 544 3.367321 TCCGTATGTAGTCCATGGTGAA 58.633 45.455 12.58 0.00 34.86 3.18
544 545 3.770388 TCCGTATGTAGTCCATGGTGAAA 59.230 43.478 12.58 0.00 34.86 2.69
545 546 4.407621 TCCGTATGTAGTCCATGGTGAAAT 59.592 41.667 12.58 1.61 34.86 2.17
546 547 5.599242 TCCGTATGTAGTCCATGGTGAAATA 59.401 40.000 12.58 0.63 34.86 1.40
547 548 6.269077 TCCGTATGTAGTCCATGGTGAAATAT 59.731 38.462 12.58 3.78 34.86 1.28
548 549 6.590292 CCGTATGTAGTCCATGGTGAAATATC 59.410 42.308 12.58 0.00 34.86 1.63
549 550 7.378966 CGTATGTAGTCCATGGTGAAATATCT 58.621 38.462 12.58 1.94 34.86 1.98
550 551 8.520351 CGTATGTAGTCCATGGTGAAATATCTA 58.480 37.037 12.58 1.07 34.86 1.98
551 552 9.862371 GTATGTAGTCCATGGTGAAATATCTAG 57.138 37.037 12.58 0.00 34.86 2.43
552 553 8.727100 ATGTAGTCCATGGTGAAATATCTAGA 57.273 34.615 12.58 0.00 30.69 2.43
553 554 8.547481 TGTAGTCCATGGTGAAATATCTAGAA 57.453 34.615 12.58 0.00 0.00 2.10
554 555 8.988060 TGTAGTCCATGGTGAAATATCTAGAAA 58.012 33.333 12.58 0.00 0.00 2.52
555 556 9.482627 GTAGTCCATGGTGAAATATCTAGAAAG 57.517 37.037 12.58 0.00 0.00 2.62
556 557 8.324191 AGTCCATGGTGAAATATCTAGAAAGA 57.676 34.615 12.58 0.00 35.80 2.52
557 558 8.207545 AGTCCATGGTGAAATATCTAGAAAGAC 58.792 37.037 12.58 0.00 33.57 3.01
558 559 8.207545 GTCCATGGTGAAATATCTAGAAAGACT 58.792 37.037 12.58 0.00 33.57 3.24
559 560 8.772250 TCCATGGTGAAATATCTAGAAAGACTT 58.228 33.333 12.58 0.00 33.57 3.01
576 577 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
577 578 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
578 579 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
585 586 4.524802 TTAGGAACGGAGGGAGTATGTA 57.475 45.455 0.00 0.00 0.00 2.29
616 617 1.256812 ACTTGCAGGGTATTTGGTGC 58.743 50.000 0.00 0.00 36.42 5.01
617 618 1.255882 CTTGCAGGGTATTTGGTGCA 58.744 50.000 0.00 0.00 44.01 4.57
802 862 2.738846 CTGGCTACAGCTTGTTGTACAG 59.261 50.000 0.54 0.00 41.70 2.74
807 867 4.035208 GCTACAGCTTGTTGTACAGTGTTT 59.965 41.667 0.00 0.00 38.21 2.83
846 906 5.506686 TTATCAGACTCTTCATCACCTCG 57.493 43.478 0.00 0.00 0.00 4.63
851 911 1.407258 ACTCTTCATCACCTCGCTAGC 59.593 52.381 4.06 4.06 0.00 3.42
852 912 1.680735 CTCTTCATCACCTCGCTAGCT 59.319 52.381 13.93 0.00 0.00 3.32
853 913 2.881513 CTCTTCATCACCTCGCTAGCTA 59.118 50.000 13.93 0.00 0.00 3.32
854 914 2.881513 TCTTCATCACCTCGCTAGCTAG 59.118 50.000 16.84 16.84 0.00 3.42
862 922 2.817258 ACCTCGCTAGCTAGCTAGATTG 59.183 50.000 42.59 31.99 46.56 2.67
921 984 3.879295 ACATCTTCACCACAACTCACAAG 59.121 43.478 0.00 0.00 0.00 3.16
922 985 3.627395 TCTTCACCACAACTCACAAGT 57.373 42.857 0.00 0.00 37.32 3.16
923 986 3.531538 TCTTCACCACAACTCACAAGTC 58.468 45.455 0.00 0.00 33.48 3.01
924 987 3.055458 TCTTCACCACAACTCACAAGTCA 60.055 43.478 0.00 0.00 33.48 3.41
925 988 2.627945 TCACCACAACTCACAAGTCAC 58.372 47.619 0.00 0.00 33.48 3.67
926 989 2.027653 TCACCACAACTCACAAGTCACA 60.028 45.455 0.00 0.00 33.48 3.58
927 990 2.746904 CACCACAACTCACAAGTCACAA 59.253 45.455 0.00 0.00 33.48 3.33
977 3066 4.319549 GGCGCCACTAAATCATTAGCTTAC 60.320 45.833 24.80 0.00 41.92 2.34
982 3071 6.318900 GCCACTAAATCATTAGCTTACCTTGT 59.681 38.462 0.00 0.00 41.92 3.16
1009 3098 1.243902 TTCAACTTCAATGGCGTCCC 58.756 50.000 0.00 0.00 0.00 4.46
1027 3119 1.625818 CCCTCAACTGCTACTCCTTGT 59.374 52.381 0.00 0.00 0.00 3.16
1054 3146 1.169661 GGTGGTTGCATTGGTCACGA 61.170 55.000 0.00 0.00 0.00 4.35
1068 3160 4.903010 ACGACGCCACTTGCCGTT 62.903 61.111 0.00 0.00 34.80 4.44
1093 3185 4.570663 GCGACCCGGACATCCTCG 62.571 72.222 0.73 4.20 35.23 4.63
1173 3265 1.053424 TCTTCACCTACACCGGCTTT 58.947 50.000 0.00 0.00 0.00 3.51
1199 3303 1.135527 CACCATGAACATGACCATGCC 59.864 52.381 19.41 3.56 42.39 4.40
1200 3304 0.382873 CCATGAACATGACCATGCCG 59.617 55.000 19.41 8.96 42.39 5.69
1201 3305 1.381522 CATGAACATGACCATGCCGA 58.618 50.000 15.25 0.00 42.39 5.54
1202 3306 1.951602 CATGAACATGACCATGCCGAT 59.048 47.619 15.25 0.00 42.39 4.18
1203 3307 1.381522 TGAACATGACCATGCCGATG 58.618 50.000 9.70 0.00 42.39 3.84
1204 3308 0.029834 GAACATGACCATGCCGATGC 59.970 55.000 9.70 0.00 42.39 3.91
1245 3361 2.036256 ACCAAGGCCAGCATGACC 59.964 61.111 5.01 0.00 39.69 4.02
1647 3763 4.687215 GCACTCACTCCGCCAGCA 62.687 66.667 0.00 0.00 0.00 4.41
1694 3812 2.152016 GTCGCCCTGAATAATAAGGCC 58.848 52.381 0.00 0.00 40.65 5.19
1695 3813 1.771854 TCGCCCTGAATAATAAGGCCA 59.228 47.619 5.01 0.00 40.65 5.36
1776 3894 5.624900 GTGTAATAATATGCGCATGTTGTGG 59.375 40.000 34.11 0.00 0.00 4.17
1784 3902 0.030504 CGCATGTTGTGGCTTGTGAA 59.969 50.000 0.00 0.00 0.00 3.18
1870 3988 4.708177 AGTTGTGTCTGTTATGCAACTCT 58.292 39.130 0.00 0.00 44.10 3.24
1907 4025 7.504924 TTTCCATGGTTACAAGTAAACTCTG 57.495 36.000 12.58 6.81 34.02 3.35
1997 6390 3.758554 CTGTACACCATTTTGGGGAGAAG 59.241 47.826 2.09 0.00 46.22 2.85
2102 6496 5.827797 ACGCCACAGAAACATCCAAATATAT 59.172 36.000 0.00 0.00 0.00 0.86
2186 6594 6.618592 GCATTCACTACACCACAATATATCGC 60.619 42.308 0.00 0.00 0.00 4.58
2398 6820 4.568152 ATGCCAAACTGAAACTGTGTAC 57.432 40.909 0.00 0.00 0.00 2.90
2463 6885 3.305744 GGCACAACCCAATACAAAATCGT 60.306 43.478 0.00 0.00 0.00 3.73
2524 6948 4.021981 TCCAAACATCAACACACACAAACA 60.022 37.500 0.00 0.00 0.00 2.83
2556 6980 3.559238 ATCAAGACGACATTGCAAACC 57.441 42.857 1.71 0.00 0.00 3.27
2562 6986 2.486203 GACGACATTGCAAACCCACATA 59.514 45.455 1.71 0.00 0.00 2.29
2588 7013 6.907853 TCAACATCATTTCACCACCAAATA 57.092 33.333 0.00 0.00 0.00 1.40
2589 7014 7.479352 TCAACATCATTTCACCACCAAATAT 57.521 32.000 0.00 0.00 0.00 1.28
2625 7050 1.868997 CAGTACTTGGTTGCCTGCG 59.131 57.895 0.00 0.00 0.00 5.18
2644 7069 0.605589 GTTGCTCGGCAGGTAGGTTT 60.606 55.000 0.00 0.00 40.61 3.27
2645 7070 0.321298 TTGCTCGGCAGGTAGGTTTC 60.321 55.000 0.00 0.00 40.61 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.023536 TGAAACTTAGGAAACAACGATGGC 60.024 41.667 0.00 0.00 0.00 4.40
1 2 5.008217 TGTGAAACTTAGGAAACAACGATGG 59.992 40.000 0.00 0.00 38.04 3.51
2 3 6.055231 TGTGAAACTTAGGAAACAACGATG 57.945 37.500 0.00 0.00 38.04 3.84
3 4 5.238650 CCTGTGAAACTTAGGAAACAACGAT 59.761 40.000 0.00 0.00 38.04 3.73
4 5 4.573201 CCTGTGAAACTTAGGAAACAACGA 59.427 41.667 0.00 0.00 38.04 3.85
5 6 4.334481 ACCTGTGAAACTTAGGAAACAACG 59.666 41.667 0.00 0.00 38.04 4.10
6 7 5.355910 TCACCTGTGAAACTTAGGAAACAAC 59.644 40.000 0.00 0.00 38.04 3.32
7 8 5.502079 TCACCTGTGAAACTTAGGAAACAA 58.498 37.500 0.00 0.00 38.04 2.83
8 9 5.105567 TCACCTGTGAAACTTAGGAAACA 57.894 39.130 0.00 0.00 38.04 2.83
9 10 7.923414 ATATCACCTGTGAAACTTAGGAAAC 57.077 36.000 3.79 0.00 43.58 2.78
10 11 8.598916 TGTATATCACCTGTGAAACTTAGGAAA 58.401 33.333 3.79 0.00 43.58 3.13
11 12 8.038944 GTGTATATCACCTGTGAAACTTAGGAA 58.961 37.037 3.79 0.00 43.58 3.36
12 13 7.553334 GTGTATATCACCTGTGAAACTTAGGA 58.447 38.462 3.79 0.00 43.58 2.94
13 14 6.475727 CGTGTATATCACCTGTGAAACTTAGG 59.524 42.308 3.79 0.00 43.58 2.69
14 15 7.033791 ACGTGTATATCACCTGTGAAACTTAG 58.966 38.462 3.79 0.00 43.58 2.18
15 16 6.927416 ACGTGTATATCACCTGTGAAACTTA 58.073 36.000 3.79 0.00 43.58 2.24
16 17 5.790593 ACGTGTATATCACCTGTGAAACTT 58.209 37.500 3.79 0.00 43.58 2.66
17 18 5.401531 ACGTGTATATCACCTGTGAAACT 57.598 39.130 3.79 0.00 43.58 2.66
18 19 6.073440 ACAAACGTGTATATCACCTGTGAAAC 60.073 38.462 3.79 4.34 43.51 2.78
19 20 5.992829 ACAAACGTGTATATCACCTGTGAAA 59.007 36.000 3.79 0.00 43.51 2.69
20 21 5.407084 CACAAACGTGTATATCACCTGTGAA 59.593 40.000 3.79 0.00 43.51 3.18
21 22 4.926832 CACAAACGTGTATATCACCTGTGA 59.073 41.667 1.93 1.93 43.51 3.58
22 23 4.435518 GCACAAACGTGTATATCACCTGTG 60.436 45.833 15.79 15.79 43.57 3.66
23 24 3.682858 GCACAAACGTGTATATCACCTGT 59.317 43.478 0.00 0.00 43.51 4.00
24 25 3.932710 AGCACAAACGTGTATATCACCTG 59.067 43.478 0.00 0.00 43.51 4.00
25 26 4.181578 GAGCACAAACGTGTATATCACCT 58.818 43.478 0.00 0.00 43.51 4.00
26 27 3.930229 TGAGCACAAACGTGTATATCACC 59.070 43.478 0.00 0.00 43.51 4.02
27 28 5.063438 ACATGAGCACAAACGTGTATATCAC 59.937 40.000 0.00 0.00 43.03 3.06
28 29 5.175127 ACATGAGCACAAACGTGTATATCA 58.825 37.500 0.00 0.00 35.72 2.15
29 30 5.290885 TGACATGAGCACAAACGTGTATATC 59.709 40.000 0.00 0.00 35.72 1.63
30 31 5.175127 TGACATGAGCACAAACGTGTATAT 58.825 37.500 0.00 0.00 35.72 0.86
31 32 4.561105 TGACATGAGCACAAACGTGTATA 58.439 39.130 0.00 0.00 35.72 1.47
32 33 3.398406 TGACATGAGCACAAACGTGTAT 58.602 40.909 0.00 0.00 35.72 2.29
33 34 2.827652 TGACATGAGCACAAACGTGTA 58.172 42.857 0.00 0.00 35.72 2.90
34 35 1.662517 TGACATGAGCACAAACGTGT 58.337 45.000 0.00 0.00 39.07 4.49
35 36 2.975410 ATGACATGAGCACAAACGTG 57.025 45.000 0.00 0.00 37.46 4.49
36 37 5.419542 AGTATATGACATGAGCACAAACGT 58.580 37.500 0.00 0.00 0.00 3.99
37 38 5.050769 GGAGTATATGACATGAGCACAAACG 60.051 44.000 0.00 0.00 0.00 3.60
38 39 5.237344 GGGAGTATATGACATGAGCACAAAC 59.763 44.000 0.00 0.00 0.00 2.93
39 40 5.130975 AGGGAGTATATGACATGAGCACAAA 59.869 40.000 0.00 0.00 0.00 2.83
40 41 4.655649 AGGGAGTATATGACATGAGCACAA 59.344 41.667 0.00 0.00 0.00 3.33
41 42 4.226384 AGGGAGTATATGACATGAGCACA 58.774 43.478 0.00 0.00 0.00 4.57
42 43 4.526262 AGAGGGAGTATATGACATGAGCAC 59.474 45.833 0.00 0.00 0.00 4.40
43 44 4.525874 CAGAGGGAGTATATGACATGAGCA 59.474 45.833 0.00 0.00 0.00 4.26
44 45 4.620332 GCAGAGGGAGTATATGACATGAGC 60.620 50.000 0.00 0.00 0.00 4.26
45 46 4.771577 AGCAGAGGGAGTATATGACATGAG 59.228 45.833 0.00 0.00 0.00 2.90
46 47 4.745351 AGCAGAGGGAGTATATGACATGA 58.255 43.478 0.00 0.00 0.00 3.07
47 48 4.081752 GGAGCAGAGGGAGTATATGACATG 60.082 50.000 0.00 0.00 0.00 3.21
48 49 4.093011 GGAGCAGAGGGAGTATATGACAT 58.907 47.826 0.00 0.00 0.00 3.06
49 50 3.141083 AGGAGCAGAGGGAGTATATGACA 59.859 47.826 0.00 0.00 0.00 3.58
50 51 3.773560 AGGAGCAGAGGGAGTATATGAC 58.226 50.000 0.00 0.00 0.00 3.06
51 52 5.600669 TTAGGAGCAGAGGGAGTATATGA 57.399 43.478 0.00 0.00 0.00 2.15
52 53 6.865834 ATTTAGGAGCAGAGGGAGTATATG 57.134 41.667 0.00 0.00 0.00 1.78
54 55 9.702253 CTTATATTTAGGAGCAGAGGGAGTATA 57.298 37.037 0.00 0.00 0.00 1.47
55 56 8.180844 ACTTATATTTAGGAGCAGAGGGAGTAT 58.819 37.037 0.00 0.00 0.00 2.12
56 57 7.451877 CACTTATATTTAGGAGCAGAGGGAGTA 59.548 40.741 0.00 0.00 0.00 2.59
57 58 6.268847 CACTTATATTTAGGAGCAGAGGGAGT 59.731 42.308 0.00 0.00 0.00 3.85
58 59 6.268847 ACACTTATATTTAGGAGCAGAGGGAG 59.731 42.308 0.00 0.00 0.00 4.30
59 60 6.143915 ACACTTATATTTAGGAGCAGAGGGA 58.856 40.000 0.00 0.00 0.00 4.20
60 61 6.426646 ACACTTATATTTAGGAGCAGAGGG 57.573 41.667 0.00 0.00 0.00 4.30
61 62 8.738645 AAAACACTTATATTTAGGAGCAGAGG 57.261 34.615 0.00 0.00 0.00 3.69
91 92 8.517878 GCTCCATATGTAGTTCATATTGCAATT 58.482 33.333 18.75 0.21 44.49 2.32
92 93 7.666804 TGCTCCATATGTAGTTCATATTGCAAT 59.333 33.333 17.56 17.56 44.49 3.56
93 94 6.997476 TGCTCCATATGTAGTTCATATTGCAA 59.003 34.615 0.00 0.00 44.49 4.08
94 95 6.532826 TGCTCCATATGTAGTTCATATTGCA 58.467 36.000 13.09 13.09 44.49 4.08
95 96 7.439157 TTGCTCCATATGTAGTTCATATTGC 57.561 36.000 1.24 6.06 44.49 3.56
98 99 9.797642 TCATTTTGCTCCATATGTAGTTCATAT 57.202 29.630 1.24 0.00 46.85 1.78
99 100 9.276590 CTCATTTTGCTCCATATGTAGTTCATA 57.723 33.333 1.24 0.00 42.30 2.15
100 101 7.776969 ACTCATTTTGCTCCATATGTAGTTCAT 59.223 33.333 1.24 0.00 40.25 2.57
101 102 7.066163 CACTCATTTTGCTCCATATGTAGTTCA 59.934 37.037 1.24 0.00 0.00 3.18
102 103 7.280876 TCACTCATTTTGCTCCATATGTAGTTC 59.719 37.037 1.24 0.00 0.00 3.01
103 104 7.112122 TCACTCATTTTGCTCCATATGTAGTT 58.888 34.615 1.24 0.00 0.00 2.24
104 105 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
105 106 7.412853 GTTCACTCATTTTGCTCCATATGTAG 58.587 38.462 1.24 0.00 0.00 2.74
106 107 6.318648 GGTTCACTCATTTTGCTCCATATGTA 59.681 38.462 1.24 0.00 0.00 2.29
107 108 5.126061 GGTTCACTCATTTTGCTCCATATGT 59.874 40.000 1.24 0.00 0.00 2.29
108 109 5.359009 AGGTTCACTCATTTTGCTCCATATG 59.641 40.000 0.00 0.00 0.00 1.78
109 110 5.513233 AGGTTCACTCATTTTGCTCCATAT 58.487 37.500 0.00 0.00 0.00 1.78
110 111 4.922206 AGGTTCACTCATTTTGCTCCATA 58.078 39.130 0.00 0.00 0.00 2.74
111 112 3.771216 AGGTTCACTCATTTTGCTCCAT 58.229 40.909 0.00 0.00 0.00 3.41
112 113 3.228188 AGGTTCACTCATTTTGCTCCA 57.772 42.857 0.00 0.00 0.00 3.86
113 114 4.072131 TGTAGGTTCACTCATTTTGCTCC 58.928 43.478 0.00 0.00 0.00 4.70
114 115 4.757149 AGTGTAGGTTCACTCATTTTGCTC 59.243 41.667 0.00 0.00 44.07 4.26
115 116 4.718961 AGTGTAGGTTCACTCATTTTGCT 58.281 39.130 0.00 0.00 44.07 3.91
124 125 5.767168 ACGTAGTTTAGAGTGTAGGTTCACT 59.233 40.000 0.00 0.00 45.46 3.41
125 126 6.006759 ACGTAGTTTAGAGTGTAGGTTCAC 57.993 41.667 0.00 0.00 37.78 3.18
145 146 8.454106 GGACTACATACGGACATATATAAACGT 58.546 37.037 11.02 11.02 38.23 3.99
146 147 8.453320 TGGACTACATACGGACATATATAAACG 58.547 37.037 0.00 0.00 0.00 3.60
152 153 9.338622 CAGATATGGACTACATACGGACATATA 57.661 37.037 0.00 0.00 44.41 0.86
153 154 7.834681 ACAGATATGGACTACATACGGACATAT 59.165 37.037 0.00 0.00 44.41 1.78
154 155 7.173032 ACAGATATGGACTACATACGGACATA 58.827 38.462 0.00 0.00 44.41 2.29
155 156 6.010850 ACAGATATGGACTACATACGGACAT 58.989 40.000 0.00 0.00 44.41 3.06
156 157 5.382616 ACAGATATGGACTACATACGGACA 58.617 41.667 0.00 0.00 44.41 4.02
157 158 5.961396 ACAGATATGGACTACATACGGAC 57.039 43.478 0.00 0.00 44.41 4.79
158 159 8.645814 AAATACAGATATGGACTACATACGGA 57.354 34.615 0.00 0.00 44.41 4.69
159 160 9.140286 CAAAATACAGATATGGACTACATACGG 57.860 37.037 0.00 0.00 44.41 4.02
160 161 9.908152 TCAAAATACAGATATGGACTACATACG 57.092 33.333 0.00 0.00 44.41 3.06
167 168 8.840321 CCGAAATTCAAAATACAGATATGGACT 58.160 33.333 0.00 0.00 0.00 3.85
168 169 7.591426 GCCGAAATTCAAAATACAGATATGGAC 59.409 37.037 0.00 0.00 0.00 4.02
169 170 7.255451 GGCCGAAATTCAAAATACAGATATGGA 60.255 37.037 0.00 0.00 0.00 3.41
170 171 6.863126 GGCCGAAATTCAAAATACAGATATGG 59.137 38.462 0.00 0.00 0.00 2.74
171 172 6.578545 CGGCCGAAATTCAAAATACAGATATG 59.421 38.462 24.07 0.00 0.00 1.78
172 173 6.485313 TCGGCCGAAATTCAAAATACAGATAT 59.515 34.615 28.99 0.00 0.00 1.63
173 174 5.818336 TCGGCCGAAATTCAAAATACAGATA 59.182 36.000 28.99 0.00 0.00 1.98
174 175 4.638421 TCGGCCGAAATTCAAAATACAGAT 59.362 37.500 28.99 0.00 0.00 2.90
175 176 4.004314 TCGGCCGAAATTCAAAATACAGA 58.996 39.130 28.99 0.00 0.00 3.41
176 177 4.349663 TCGGCCGAAATTCAAAATACAG 57.650 40.909 28.99 0.00 0.00 2.74
177 178 4.768130 TTCGGCCGAAATTCAAAATACA 57.232 36.364 37.13 10.94 0.00 2.29
178 179 6.505732 CGAAATTCGGCCGAAATTCAAAATAC 60.506 38.462 43.90 28.47 41.53 1.89
179 180 5.513495 CGAAATTCGGCCGAAATTCAAAATA 59.487 36.000 43.90 25.01 41.53 1.40
180 181 4.326009 CGAAATTCGGCCGAAATTCAAAAT 59.674 37.500 43.90 27.62 41.53 1.82
181 182 3.670991 CGAAATTCGGCCGAAATTCAAAA 59.329 39.130 43.90 26.27 41.53 2.44
182 183 3.238441 CGAAATTCGGCCGAAATTCAAA 58.762 40.909 43.90 26.91 41.53 2.69
183 184 2.857618 CGAAATTCGGCCGAAATTCAA 58.142 42.857 43.90 27.55 41.53 2.69
184 185 2.535934 CGAAATTCGGCCGAAATTCA 57.464 45.000 43.90 28.18 41.53 2.57
195 196 1.934463 CCGAGATGGCCGAAATTCG 59.066 57.895 8.62 8.62 40.07 3.34
214 215 2.880890 CGAAGATAGATTTTGCCCCAGG 59.119 50.000 0.00 0.00 0.00 4.45
215 216 3.561725 GTCGAAGATAGATTTTGCCCCAG 59.438 47.826 0.00 0.00 40.67 4.45
216 217 3.541632 GTCGAAGATAGATTTTGCCCCA 58.458 45.455 0.00 0.00 40.67 4.96
217 218 2.879026 GGTCGAAGATAGATTTTGCCCC 59.121 50.000 0.00 0.00 40.67 5.80
218 219 2.544267 CGGTCGAAGATAGATTTTGCCC 59.456 50.000 0.00 0.00 40.67 5.36
219 220 3.454375 TCGGTCGAAGATAGATTTTGCC 58.546 45.455 0.00 0.00 40.67 4.52
220 221 5.464965 TTTCGGTCGAAGATAGATTTTGC 57.535 39.130 5.93 0.00 40.67 3.68
221 222 6.907212 CCAATTTCGGTCGAAGATAGATTTTG 59.093 38.462 5.93 3.05 40.67 2.44
222 223 6.598064 ACCAATTTCGGTCGAAGATAGATTTT 59.402 34.615 5.93 0.00 40.67 1.82
223 224 6.113411 ACCAATTTCGGTCGAAGATAGATTT 58.887 36.000 5.93 0.00 40.67 2.17
224 225 5.671493 ACCAATTTCGGTCGAAGATAGATT 58.329 37.500 5.93 0.94 40.67 2.40
225 226 5.277857 ACCAATTTCGGTCGAAGATAGAT 57.722 39.130 5.93 0.00 40.67 1.98
226 227 4.679662 GACCAATTTCGGTCGAAGATAGA 58.320 43.478 5.93 0.00 45.77 1.98
263 264 8.821894 CCAAAATTTTGACCGAAATTTGACTAA 58.178 29.630 28.44 0.00 44.26 2.24
264 265 7.042389 GCCAAAATTTTGACCGAAATTTGACTA 60.042 33.333 28.44 0.00 44.26 2.59
265 266 6.238347 GCCAAAATTTTGACCGAAATTTGACT 60.238 34.615 28.44 4.22 44.26 3.41
266 267 5.906838 GCCAAAATTTTGACCGAAATTTGAC 59.093 36.000 28.44 9.12 44.26 3.18
267 268 5.008118 GGCCAAAATTTTGACCGAAATTTGA 59.992 36.000 28.44 0.00 44.26 2.69
268 269 5.211454 GGCCAAAATTTTGACCGAAATTTG 58.789 37.500 28.44 11.21 44.26 2.32
269 270 5.431420 GGCCAAAATTTTGACCGAAATTT 57.569 34.783 28.44 12.55 45.95 1.82
276 277 5.431420 AAATTTCGGCCAAAATTTTGACC 57.569 34.783 28.44 25.36 43.05 4.02
281 282 8.815189 CATTTTCAAAAATTTCGGCCAAAATTT 58.185 25.926 19.32 19.32 45.90 1.82
282 283 8.193438 TCATTTTCAAAAATTTCGGCCAAAATT 58.807 25.926 8.64 8.64 39.83 1.82
283 284 7.647318 GTCATTTTCAAAAATTTCGGCCAAAAT 59.353 29.630 2.24 0.00 36.52 1.82
284 285 6.969473 GTCATTTTCAAAAATTTCGGCCAAAA 59.031 30.769 2.24 0.00 36.52 2.44
285 286 6.458888 GGTCATTTTCAAAAATTTCGGCCAAA 60.459 34.615 2.24 2.92 36.52 3.28
286 287 5.008118 GGTCATTTTCAAAAATTTCGGCCAA 59.992 36.000 2.24 0.00 36.52 4.52
287 288 4.513318 GGTCATTTTCAAAAATTTCGGCCA 59.487 37.500 2.24 0.00 36.52 5.36
288 289 4.376920 CGGTCATTTTCAAAAATTTCGGCC 60.377 41.667 0.00 0.00 36.52 6.13
289 290 4.446051 TCGGTCATTTTCAAAAATTTCGGC 59.554 37.500 0.00 0.00 36.52 5.54
290 291 6.517914 TTCGGTCATTTTCAAAAATTTCGG 57.482 33.333 0.00 1.19 36.52 4.30
291 292 8.986039 AATTTCGGTCATTTTCAAAAATTTCG 57.014 26.923 0.00 3.97 36.52 3.46
292 293 9.091255 CGAATTTCGGTCATTTTCAAAAATTTC 57.909 29.630 10.95 0.00 34.90 2.17
293 294 8.986039 CGAATTTCGGTCATTTTCAAAAATTT 57.014 26.923 10.95 0.00 34.90 1.82
310 311 3.924238 CCAAGATGGCCGAATTTCG 57.076 52.632 11.81 11.81 40.07 3.46
343 344 9.838975 GTGTTTTGATTTTTGGTTTGAGATTTT 57.161 25.926 0.00 0.00 0.00 1.82
344 345 9.007901 TGTGTTTTGATTTTTGGTTTGAGATTT 57.992 25.926 0.00 0.00 0.00 2.17
345 346 8.558973 TGTGTTTTGATTTTTGGTTTGAGATT 57.441 26.923 0.00 0.00 0.00 2.40
346 347 7.280652 CCTGTGTTTTGATTTTTGGTTTGAGAT 59.719 33.333 0.00 0.00 0.00 2.75
347 348 6.593382 CCTGTGTTTTGATTTTTGGTTTGAGA 59.407 34.615 0.00 0.00 0.00 3.27
348 349 6.371271 ACCTGTGTTTTGATTTTTGGTTTGAG 59.629 34.615 0.00 0.00 0.00 3.02
349 350 6.234177 ACCTGTGTTTTGATTTTTGGTTTGA 58.766 32.000 0.00 0.00 0.00 2.69
350 351 6.403092 GGACCTGTGTTTTGATTTTTGGTTTG 60.403 38.462 0.00 0.00 0.00 2.93
351 352 5.645929 GGACCTGTGTTTTGATTTTTGGTTT 59.354 36.000 0.00 0.00 0.00 3.27
352 353 5.182487 GGACCTGTGTTTTGATTTTTGGTT 58.818 37.500 0.00 0.00 0.00 3.67
353 354 4.223923 TGGACCTGTGTTTTGATTTTTGGT 59.776 37.500 0.00 0.00 0.00 3.67
354 355 4.764172 TGGACCTGTGTTTTGATTTTTGG 58.236 39.130 0.00 0.00 0.00 3.28
355 356 8.497554 CAATATGGACCTGTGTTTTGATTTTTG 58.502 33.333 0.00 0.00 0.00 2.44
356 357 8.428063 TCAATATGGACCTGTGTTTTGATTTTT 58.572 29.630 0.00 0.00 0.00 1.94
357 358 7.961351 TCAATATGGACCTGTGTTTTGATTTT 58.039 30.769 0.00 0.00 0.00 1.82
358 359 7.537596 TCAATATGGACCTGTGTTTTGATTT 57.462 32.000 0.00 0.00 0.00 2.17
359 360 7.537596 TTCAATATGGACCTGTGTTTTGATT 57.462 32.000 0.00 0.00 0.00 2.57
360 361 7.537596 TTTCAATATGGACCTGTGTTTTGAT 57.462 32.000 0.00 0.00 0.00 2.57
361 362 6.968263 TTTCAATATGGACCTGTGTTTTGA 57.032 33.333 0.00 0.00 0.00 2.69
362 363 7.605449 AGATTTCAATATGGACCTGTGTTTTG 58.395 34.615 0.00 0.00 0.00 2.44
363 364 7.671398 AGAGATTTCAATATGGACCTGTGTTTT 59.329 33.333 0.00 0.00 0.00 2.43
364 365 7.177878 AGAGATTTCAATATGGACCTGTGTTT 58.822 34.615 0.00 0.00 0.00 2.83
365 366 6.725364 AGAGATTTCAATATGGACCTGTGTT 58.275 36.000 0.00 0.00 0.00 3.32
366 367 6.319048 AGAGATTTCAATATGGACCTGTGT 57.681 37.500 0.00 0.00 0.00 3.72
367 368 8.737168 TTTAGAGATTTCAATATGGACCTGTG 57.263 34.615 0.00 0.00 0.00 3.66
368 369 9.753674 TTTTTAGAGATTTCAATATGGACCTGT 57.246 29.630 0.00 0.00 0.00 4.00
390 391 7.999545 GGCCCTCTCCTAAATATAAGTCTTTTT 59.000 37.037 0.00 0.00 0.00 1.94
391 392 7.351187 AGGCCCTCTCCTAAATATAAGTCTTTT 59.649 37.037 0.00 0.00 33.95 2.27
392 393 6.852372 AGGCCCTCTCCTAAATATAAGTCTTT 59.148 38.462 0.00 0.00 33.95 2.52
393 394 6.394747 AGGCCCTCTCCTAAATATAAGTCTT 58.605 40.000 0.00 0.00 33.95 3.01
394 395 5.983608 AGGCCCTCTCCTAAATATAAGTCT 58.016 41.667 0.00 0.00 33.95 3.24
395 396 6.288941 GAGGCCCTCTCCTAAATATAAGTC 57.711 45.833 2.64 0.00 36.38 3.01
414 415 3.959991 GAACAGAGGGCACGGAGGC 62.960 68.421 0.00 0.00 43.27 4.70
415 416 2.266055 GAACAGAGGGCACGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
416 417 0.970937 TAGGAACAGAGGGCACGGAG 60.971 60.000 0.00 0.00 0.00 4.63
417 418 0.543410 TTAGGAACAGAGGGCACGGA 60.543 55.000 0.00 0.00 0.00 4.69
418 419 0.323629 TTTAGGAACAGAGGGCACGG 59.676 55.000 0.00 0.00 0.00 4.94
419 420 2.403252 ATTTAGGAACAGAGGGCACG 57.597 50.000 0.00 0.00 0.00 5.34
420 421 6.483640 CACTTATATTTAGGAACAGAGGGCAC 59.516 42.308 0.00 0.00 0.00 5.01
421 422 6.157994 ACACTTATATTTAGGAACAGAGGGCA 59.842 38.462 0.00 0.00 0.00 5.36
422 423 6.592870 ACACTTATATTTAGGAACAGAGGGC 58.407 40.000 0.00 0.00 0.00 5.19
423 424 9.462606 AAAACACTTATATTTAGGAACAGAGGG 57.537 33.333 0.00 0.00 0.00 4.30
447 448 7.015098 TGCAGTCCCTTATTGAAATCTCAAAAA 59.985 33.333 0.00 0.00 44.64 1.94
448 449 6.493115 TGCAGTCCCTTATTGAAATCTCAAAA 59.507 34.615 0.00 0.00 44.64 2.44
449 450 6.009589 TGCAGTCCCTTATTGAAATCTCAAA 58.990 36.000 0.00 0.00 44.64 2.69
450 451 5.569355 TGCAGTCCCTTATTGAAATCTCAA 58.431 37.500 0.00 0.00 45.53 3.02
451 452 5.178096 TGCAGTCCCTTATTGAAATCTCA 57.822 39.130 0.00 0.00 0.00 3.27
452 453 7.220030 TCTATGCAGTCCCTTATTGAAATCTC 58.780 38.462 0.00 0.00 0.00 2.75
453 454 7.071698 TCTCTATGCAGTCCCTTATTGAAATCT 59.928 37.037 0.00 0.00 0.00 2.40
454 455 7.220030 TCTCTATGCAGTCCCTTATTGAAATC 58.780 38.462 0.00 0.00 0.00 2.17
455 456 7.141758 TCTCTATGCAGTCCCTTATTGAAAT 57.858 36.000 0.00 0.00 0.00 2.17
456 457 6.560003 TCTCTATGCAGTCCCTTATTGAAA 57.440 37.500 0.00 0.00 0.00 2.69
457 458 5.453903 GCTCTCTATGCAGTCCCTTATTGAA 60.454 44.000 0.00 0.00 0.00 2.69
458 459 4.039730 GCTCTCTATGCAGTCCCTTATTGA 59.960 45.833 0.00 0.00 0.00 2.57
459 460 4.202295 TGCTCTCTATGCAGTCCCTTATTG 60.202 45.833 0.00 0.00 35.31 1.90
460 461 3.969976 TGCTCTCTATGCAGTCCCTTATT 59.030 43.478 0.00 0.00 35.31 1.40
461 462 3.581101 TGCTCTCTATGCAGTCCCTTAT 58.419 45.455 0.00 0.00 35.31 1.73
462 463 3.032265 TGCTCTCTATGCAGTCCCTTA 57.968 47.619 0.00 0.00 35.31 2.69
463 464 1.871418 TGCTCTCTATGCAGTCCCTT 58.129 50.000 0.00 0.00 35.31 3.95
464 465 1.871418 TTGCTCTCTATGCAGTCCCT 58.129 50.000 0.00 0.00 41.71 4.20
465 466 2.698855 TTTGCTCTCTATGCAGTCCC 57.301 50.000 0.00 0.00 41.71 4.46
466 467 4.194640 TCATTTTGCTCTCTATGCAGTCC 58.805 43.478 0.00 0.00 41.71 3.85
467 468 4.874966 ACTCATTTTGCTCTCTATGCAGTC 59.125 41.667 0.00 0.00 41.71 3.51
468 469 4.841422 ACTCATTTTGCTCTCTATGCAGT 58.159 39.130 0.00 0.00 41.71 4.40
469 470 4.874396 TGACTCATTTTGCTCTCTATGCAG 59.126 41.667 0.00 0.00 41.71 4.41
470 471 4.835678 TGACTCATTTTGCTCTCTATGCA 58.164 39.130 0.00 0.00 38.80 3.96
471 472 5.448360 GGTTGACTCATTTTGCTCTCTATGC 60.448 44.000 0.00 0.00 0.00 3.14
472 473 5.879223 AGGTTGACTCATTTTGCTCTCTATG 59.121 40.000 0.00 0.00 0.00 2.23
473 474 6.059787 AGGTTGACTCATTTTGCTCTCTAT 57.940 37.500 0.00 0.00 0.00 1.98
474 475 5.489792 AGGTTGACTCATTTTGCTCTCTA 57.510 39.130 0.00 0.00 0.00 2.43
475 476 4.363991 AGGTTGACTCATTTTGCTCTCT 57.636 40.909 0.00 0.00 0.00 3.10
476 477 4.997395 TGTAGGTTGACTCATTTTGCTCTC 59.003 41.667 0.00 0.00 0.00 3.20
477 478 4.757149 GTGTAGGTTGACTCATTTTGCTCT 59.243 41.667 0.00 0.00 0.00 4.09
478 479 4.757149 AGTGTAGGTTGACTCATTTTGCTC 59.243 41.667 0.00 0.00 0.00 4.26
479 480 4.718961 AGTGTAGGTTGACTCATTTTGCT 58.281 39.130 0.00 0.00 0.00 3.91
480 481 6.743575 ATAGTGTAGGTTGACTCATTTTGC 57.256 37.500 0.00 0.00 0.00 3.68
486 487 9.305555 ACTTAGTTTATAGTGTAGGTTGACTCA 57.694 33.333 0.00 0.00 0.00 3.41
487 488 9.786105 GACTTAGTTTATAGTGTAGGTTGACTC 57.214 37.037 0.00 0.00 0.00 3.36
488 489 9.531158 AGACTTAGTTTATAGTGTAGGTTGACT 57.469 33.333 0.00 0.00 0.00 3.41
509 510 9.393512 GGACTACATACGGATGTATATAGACTT 57.606 37.037 20.64 0.00 45.42 3.01
510 511 8.546322 TGGACTACATACGGATGTATATAGACT 58.454 37.037 20.64 0.00 45.42 3.24
511 512 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
512 513 9.338622 CATGGACTACATACGGATGTATATAGA 57.661 37.037 20.64 5.22 45.42 1.98
513 514 8.568794 CCATGGACTACATACGGATGTATATAG 58.431 40.741 20.64 13.28 45.42 1.31
514 515 8.057011 ACCATGGACTACATACGGATGTATATA 58.943 37.037 20.64 8.47 45.42 0.86
515 516 6.895756 ACCATGGACTACATACGGATGTATAT 59.104 38.462 20.64 12.15 45.42 0.86
516 517 6.152154 CACCATGGACTACATACGGATGTATA 59.848 42.308 20.64 8.48 45.42 1.47
517 518 5.047306 CACCATGGACTACATACGGATGTAT 60.047 44.000 20.64 11.04 45.42 2.29
518 519 4.279922 CACCATGGACTACATACGGATGTA 59.720 45.833 21.47 19.32 44.77 2.29
520 521 3.320826 TCACCATGGACTACATACGGATG 59.679 47.826 21.47 5.94 37.84 3.51
521 522 3.572642 TCACCATGGACTACATACGGAT 58.427 45.455 21.47 0.00 37.84 4.18
522 523 3.021177 TCACCATGGACTACATACGGA 57.979 47.619 21.47 0.00 37.84 4.69
523 524 3.812156 TTCACCATGGACTACATACGG 57.188 47.619 21.47 0.00 37.84 4.02
524 525 7.378966 AGATATTTCACCATGGACTACATACG 58.621 38.462 21.47 0.00 37.84 3.06
525 526 9.862371 CTAGATATTTCACCATGGACTACATAC 57.138 37.037 21.47 4.24 37.84 2.39
526 527 9.822727 TCTAGATATTTCACCATGGACTACATA 57.177 33.333 21.47 8.17 37.84 2.29
527 528 8.727100 TCTAGATATTTCACCATGGACTACAT 57.273 34.615 21.47 6.11 41.57 2.29
528 529 8.547481 TTCTAGATATTTCACCATGGACTACA 57.453 34.615 21.47 0.00 0.00 2.74
529 530 9.482627 CTTTCTAGATATTTCACCATGGACTAC 57.517 37.037 21.47 1.35 0.00 2.73
530 531 9.434275 TCTTTCTAGATATTTCACCATGGACTA 57.566 33.333 21.47 0.00 0.00 2.59
531 532 8.207545 GTCTTTCTAGATATTTCACCATGGACT 58.792 37.037 21.47 0.00 31.86 3.85
532 533 8.207545 AGTCTTTCTAGATATTTCACCATGGAC 58.792 37.037 21.47 0.00 31.86 4.02
533 534 8.324191 AGTCTTTCTAGATATTTCACCATGGA 57.676 34.615 21.47 0.00 31.86 3.41
534 535 8.970859 AAGTCTTTCTAGATATTTCACCATGG 57.029 34.615 11.19 11.19 31.86 3.66
550 551 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
551 552 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
552 553 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
553 554 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
554 555 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
555 556 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
556 557 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
557 558 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
558 559 7.731688 ACATACTCCCTCCGTTCCTAAATATAA 59.268 37.037 0.00 0.00 0.00 0.98
559 560 7.243824 ACATACTCCCTCCGTTCCTAAATATA 58.756 38.462 0.00 0.00 0.00 0.86
560 561 6.082707 ACATACTCCCTCCGTTCCTAAATAT 58.917 40.000 0.00 0.00 0.00 1.28
561 562 5.461327 ACATACTCCCTCCGTTCCTAAATA 58.539 41.667 0.00 0.00 0.00 1.40
562 563 4.296056 ACATACTCCCTCCGTTCCTAAAT 58.704 43.478 0.00 0.00 0.00 1.40
563 564 3.716431 ACATACTCCCTCCGTTCCTAAA 58.284 45.455 0.00 0.00 0.00 1.85
564 565 3.393426 ACATACTCCCTCCGTTCCTAA 57.607 47.619 0.00 0.00 0.00 2.69
565 566 3.461085 AGTACATACTCCCTCCGTTCCTA 59.539 47.826 0.00 0.00 0.00 2.94
566 567 2.244252 AGTACATACTCCCTCCGTTCCT 59.756 50.000 0.00 0.00 0.00 3.36
567 568 2.664015 AGTACATACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
568 569 4.202441 TGTAGTACATACTCCCTCCGTTC 58.798 47.826 0.00 0.00 37.73 3.95
569 570 4.240881 TGTAGTACATACTCCCTCCGTT 57.759 45.455 0.00 0.00 37.73 4.44
570 571 3.939740 TGTAGTACATACTCCCTCCGT 57.060 47.619 0.00 0.00 37.73 4.69
571 572 5.766670 TGTAATGTAGTACATACTCCCTCCG 59.233 44.000 16.08 0.00 37.97 4.63
572 573 7.778185 ATGTAATGTAGTACATACTCCCTCC 57.222 40.000 16.08 0.29 41.79 4.30
585 586 5.693769 ACCCTGCAAGTATGTAATGTAGT 57.306 39.130 0.00 0.00 0.00 2.73
616 617 7.470079 CCTCAACTTGACAAATATGATCTGTG 58.530 38.462 0.00 0.00 0.00 3.66
617 618 6.094603 GCCTCAACTTGACAAATATGATCTGT 59.905 38.462 0.00 0.00 0.00 3.41
807 867 4.163427 TGATAAACCAAGGGCCATGAAAA 58.837 39.130 10.97 0.00 0.00 2.29
810 870 2.580322 TCTGATAAACCAAGGGCCATGA 59.420 45.455 10.97 0.00 0.00 3.07
846 906 3.258123 AAGAGGCAATCTAGCTAGCTAGC 59.742 47.826 36.81 33.96 44.10 3.42
851 911 4.399004 ACACAAGAGGCAATCTAGCTAG 57.601 45.455 15.01 15.01 37.23 3.42
852 912 7.782897 ATATACACAAGAGGCAATCTAGCTA 57.217 36.000 0.00 0.00 37.23 3.32
853 913 6.678568 ATATACACAAGAGGCAATCTAGCT 57.321 37.500 0.00 0.00 37.23 3.32
854 914 8.833231 TTTATATACACAAGAGGCAATCTAGC 57.167 34.615 0.00 0.00 37.23 3.42
921 984 0.027586 GTGAACGCTGTGGTTGTGAC 59.972 55.000 0.00 0.00 0.00 3.67
922 985 1.092921 GGTGAACGCTGTGGTTGTGA 61.093 55.000 0.00 0.00 0.00 3.58
923 986 1.355210 GGTGAACGCTGTGGTTGTG 59.645 57.895 0.00 0.00 0.00 3.33
924 987 0.678366 TTGGTGAACGCTGTGGTTGT 60.678 50.000 0.00 0.00 0.00 3.32
925 988 0.667993 ATTGGTGAACGCTGTGGTTG 59.332 50.000 0.00 0.00 0.00 3.77
926 989 0.951558 GATTGGTGAACGCTGTGGTT 59.048 50.000 0.00 0.00 0.00 3.67
927 990 0.179032 TGATTGGTGAACGCTGTGGT 60.179 50.000 0.00 0.00 0.00 4.16
977 3066 6.801539 TTGAAGTTGAATGTAGCTACAAGG 57.198 37.500 29.26 0.00 39.99 3.61
982 3071 4.332543 CGCCATTGAAGTTGAATGTAGCTA 59.667 41.667 13.09 0.00 0.00 3.32
1009 3098 4.926238 CAGTAACAAGGAGTAGCAGTTGAG 59.074 45.833 0.00 0.00 0.00 3.02
1027 3119 1.959985 CAATGCAACCACCACCAGTAA 59.040 47.619 0.00 0.00 0.00 2.24
1114 3206 1.411246 TGGTGCTATCCCGTACATGTC 59.589 52.381 0.00 0.00 0.00 3.06
1173 3265 2.046411 ATGTTCATGGTGGCGCGA 60.046 55.556 12.10 0.00 0.00 5.87
1245 3361 2.027625 GTTGAGTGCCGGGAACTCG 61.028 63.158 26.45 0.00 45.81 4.18
1645 3761 3.163594 CACCGACGAATCATTTCTTTGC 58.836 45.455 0.00 0.00 0.00 3.68
1647 3763 6.148811 ACAATACACCGACGAATCATTTCTTT 59.851 34.615 0.00 0.00 0.00 2.52
1694 3812 3.739810 CCATCATTCACTAGCTCGATGTG 59.260 47.826 0.00 0.00 0.00 3.21
1695 3813 3.386078 ACCATCATTCACTAGCTCGATGT 59.614 43.478 0.00 0.00 0.00 3.06
1776 3894 5.048782 TGAGTCACCATAACAATTCACAAGC 60.049 40.000 0.00 0.00 0.00 4.01
1849 3967 5.207768 CAAGAGTTGCATAACAGACACAAC 58.792 41.667 0.00 0.00 40.65 3.32
1940 4804 5.648092 GGGACACTTGCTTTATGTTATGACT 59.352 40.000 0.00 0.00 0.00 3.41
1945 4809 5.248477 AGAGAGGGACACTTGCTTTATGTTA 59.752 40.000 0.00 0.00 0.00 2.41
1953 6346 3.396685 AGATAGAGAGGGACACTTGCT 57.603 47.619 0.00 0.00 0.00 3.91
1954 6347 3.704061 AGAAGATAGAGAGGGACACTTGC 59.296 47.826 0.00 0.00 0.00 4.01
1997 6390 9.944376 TCCATAGTGTTATTTAGAATGATAGGC 57.056 33.333 0.00 0.00 0.00 3.93
2116 6510 9.770097 TTCTATCCATTTCAAGATTGTAGCTAG 57.230 33.333 0.00 0.00 0.00 3.42
2227 6635 3.735237 CTTGGCGATTAGAGCTAAGGA 57.265 47.619 6.43 0.00 45.48 3.36
2398 6820 1.670811 GAAGGCACCGATGTTGTATGG 59.329 52.381 0.00 0.00 0.00 2.74
2524 6948 3.927142 GTCGTCTTGATTTGGATCGAACT 59.073 43.478 0.00 0.00 34.91 3.01
2556 6980 7.276218 GTGGTGAAATGATGTTGAATTATGTGG 59.724 37.037 0.00 0.00 0.00 4.17
2562 6986 5.804944 TGGTGGTGAAATGATGTTGAATT 57.195 34.783 0.00 0.00 0.00 2.17
2588 7013 1.491754 TGCATGCACATGGTAGGAGAT 59.508 47.619 18.46 0.00 39.16 2.75
2589 7014 0.911053 TGCATGCACATGGTAGGAGA 59.089 50.000 18.46 0.00 39.16 3.71
2625 7050 0.605589 AAACCTACCTGCCGAGCAAC 60.606 55.000 0.35 0.00 38.41 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.