Multiple sequence alignment - TraesCS4B01G008500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G008500 chr4B 100.000 2651 0 0 1 2651 5521539 5524189 0.000000e+00 4896.0
1 TraesCS4B01G008500 chr4B 81.818 341 52 8 78 413 5530462 5530797 7.230000e-71 278.0
2 TraesCS4B01G008500 chr4A 90.517 2668 175 39 1 2642 601155459 601158074 0.000000e+00 3454.0
3 TraesCS4B01G008500 chr4A 84.830 824 121 4 1131 1950 601170062 601170885 0.000000e+00 826.0
4 TraesCS4B01G008500 chr4A 84.302 172 20 3 927 1092 601161179 601161349 7.590000e-36 161.0
5 TraesCS4B01G008500 chr4A 91.045 67 6 0 15 81 601177028 601177094 1.010000e-14 91.6
6 TraesCS4B01G008500 chr4A 73.897 272 50 18 58 317 601194427 601194689 3.630000e-14 89.8
7 TraesCS4B01G008500 chrUn 93.315 1466 85 9 727 2185 60928432 60929891 0.000000e+00 2152.0
8 TraesCS4B01G008500 chrUn 82.992 1564 214 35 571 2109 60935264 60936800 0.000000e+00 1367.0
9 TraesCS4B01G008500 chrUn 89.509 753 46 20 1 724 60927512 60928260 0.000000e+00 922.0
10 TraesCS4B01G008500 chrUn 82.493 337 54 3 78 413 60942336 60942668 9.280000e-75 291.0
11 TraesCS4B01G008500 chrUn 80.069 291 37 5 43 333 60934666 60934935 2.080000e-46 196.0
12 TraesCS4B01G008500 chrUn 89.706 68 6 1 14 81 60942158 60942224 4.700000e-13 86.1
13 TraesCS4B01G008500 chr5D 79.034 787 136 16 895 1656 412448700 412449482 1.820000e-141 512.0
14 TraesCS4B01G008500 chr5B 77.998 859 149 19 895 1717 496549618 496550472 1.100000e-138 503.0
15 TraesCS4B01G008500 chr3D 94.286 35 2 0 1305 1339 157549526 157549492 1.000000e-03 54.7
16 TraesCS4B01G008500 chr3B 94.286 35 2 0 1305 1339 228807337 228807303 1.000000e-03 54.7
17 TraesCS4B01G008500 chr3A 100.000 29 0 0 1305 1333 170649402 170649430 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G008500 chr4B 5521539 5524189 2650 False 4896.0 4896 100.0000 1 2651 1 chr4B.!!$F1 2650
1 TraesCS4B01G008500 chr4A 601155459 601161349 5890 False 1807.5 3454 87.4095 1 2642 2 chr4A.!!$F4 2641
2 TraesCS4B01G008500 chr4A 601170062 601170885 823 False 826.0 826 84.8300 1131 1950 1 chr4A.!!$F1 819
3 TraesCS4B01G008500 chrUn 60927512 60929891 2379 False 1537.0 2152 91.4120 1 2185 2 chrUn.!!$F1 2184
4 TraesCS4B01G008500 chrUn 60934666 60936800 2134 False 781.5 1367 81.5305 43 2109 2 chrUn.!!$F2 2066
5 TraesCS4B01G008500 chr5D 412448700 412449482 782 False 512.0 512 79.0340 895 1656 1 chr5D.!!$F1 761
6 TraesCS4B01G008500 chr5B 496549618 496550472 854 False 503.0 503 77.9980 895 1717 1 chr5B.!!$F1 822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 757 0.666374 GGGTTTTGGTGGACAAGTCG 59.334 55.000 0.0 0.0 40.82 4.18 F
1353 1708 1.002033 GCTGAGTTGCTGTTTGTCCAG 60.002 52.381 0.0 0.0 35.49 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 1924 0.746204 TGAACGACTTGGCAAGCACA 60.746 50.000 26.45 15.62 0.0 4.57 R
2553 2942 2.857483 TGCGAGTGGGATTTTCTTTGA 58.143 42.857 0.00 0.00 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.394712 GTCGACCAGGCCCACCAG 62.395 72.222 3.51 0.00 39.06 4.00
205 206 2.671963 GGTGAACTTGGCCGGGTC 60.672 66.667 2.18 6.63 0.00 4.46
343 344 2.427245 CGAAGGCCACGGAGAGGAT 61.427 63.158 5.01 0.00 42.26 3.24
353 354 1.380403 CGGAGAGGATGACGAGCAGT 61.380 60.000 0.00 0.00 0.00 4.40
367 368 2.784380 CGAGCAGTGTAATAAGAGACGC 59.216 50.000 0.00 0.00 0.00 5.19
392 393 2.095853 CGCCATTTTCGCTGAGTTGTAT 59.904 45.455 0.00 0.00 0.00 2.29
397 398 5.460646 CATTTTCGCTGAGTTGTATGGTTT 58.539 37.500 0.00 0.00 0.00 3.27
586 713 9.686683 AAGCTTTGATAATACTAAATCCAGTGT 57.313 29.630 0.00 0.00 0.00 3.55
626 757 0.666374 GGGTTTTGGTGGACAAGTCG 59.334 55.000 0.00 0.00 40.82 4.18
649 780 5.063060 CGTACAGCTGTAATTTACCAAGTCC 59.937 44.000 27.61 9.79 31.52 3.85
693 827 8.370182 ACCAAAGTTTTGATCAGAATGCTAATT 58.630 29.630 1.53 0.00 40.55 1.40
694 828 8.866956 CCAAAGTTTTGATCAGAATGCTAATTC 58.133 33.333 1.53 0.00 40.26 2.17
715 849 8.570068 AATTCTTTTTCCTAATTTGCATGCAT 57.430 26.923 23.37 9.62 0.00 3.96
724 858 5.010314 CCTAATTTGCATGCATGTATGTCCT 59.990 40.000 26.79 9.06 0.00 3.85
725 859 3.786516 TTTGCATGCATGTATGTCCTG 57.213 42.857 26.79 0.85 0.00 3.86
726 860 2.713863 TGCATGCATGTATGTCCTGA 57.286 45.000 26.79 2.44 0.00 3.86
727 861 3.217681 TGCATGCATGTATGTCCTGAT 57.782 42.857 26.79 0.00 0.00 2.90
728 862 2.882137 TGCATGCATGTATGTCCTGATG 59.118 45.455 26.79 0.00 0.00 3.07
729 863 2.882761 GCATGCATGTATGTCCTGATGT 59.117 45.455 26.79 0.00 0.00 3.06
730 864 3.058432 GCATGCATGTATGTCCTGATGTC 60.058 47.826 26.79 2.16 0.00 3.06
731 865 3.198409 TGCATGTATGTCCTGATGTCC 57.802 47.619 0.00 0.00 0.00 4.02
740 874 3.746940 TGTCCTGATGTCCATATGCATG 58.253 45.455 10.16 0.00 0.00 4.06
749 1060 2.314071 CCATATGCATGGTTGGGGAT 57.686 50.000 10.16 0.00 45.92 3.85
769 1080 4.142600 GGATACCAAAGAGTTGCATGACAC 60.143 45.833 0.00 0.00 33.01 3.67
775 1086 1.915614 GAGTTGCATGACACTGGCCG 61.916 60.000 0.00 0.00 0.00 6.13
793 1104 3.198872 GCCGGTTAATTCTTCCTCAGAG 58.801 50.000 1.90 0.00 31.12 3.35
794 1105 3.118738 GCCGGTTAATTCTTCCTCAGAGA 60.119 47.826 1.90 0.00 31.12 3.10
821 1136 4.508128 TAGCCCTAGCGTGCGTGC 62.508 66.667 0.00 0.00 46.67 5.34
850 1165 4.973055 GGTACGTGCGTGGGTGCA 62.973 66.667 7.55 0.00 43.95 4.57
870 1186 1.658409 GCGTGTTGCAGCTTTGGTC 60.658 57.895 1.17 0.00 45.45 4.02
883 1199 5.505324 GCAGCTTTGGTCTTCATCATATGTC 60.505 44.000 1.90 0.00 0.00 3.06
1104 1450 4.330250 CAGACATCCTTGGTGACTTCATT 58.670 43.478 0.00 0.00 0.00 2.57
1146 1492 2.126071 CCGCCGACGAACATCACT 60.126 61.111 0.00 0.00 43.93 3.41
1216 1571 3.853104 TGGCCTCCACAGTATTTCG 57.147 52.632 3.32 0.00 0.00 3.46
1269 1624 1.292223 GCTCAACGGGCAGAGTGTA 59.708 57.895 0.00 0.00 34.39 2.90
1353 1708 1.002033 GCTGAGTTGCTGTTTGTCCAG 60.002 52.381 0.00 0.00 35.49 3.86
1414 1769 1.203063 AGCTCTACACACAGGACCTCA 60.203 52.381 0.00 0.00 0.00 3.86
1690 2053 2.219674 GCTCTTGTTCTTCGTCACTGTG 59.780 50.000 0.17 0.17 0.00 3.66
1901 2265 5.696270 CACTTGTGTCTGTTATGCAACTCTA 59.304 40.000 0.00 0.00 35.56 2.43
2004 2374 3.199071 AGTTGAGTAGTGTTGTGGTTCCA 59.801 43.478 0.00 0.00 0.00 3.53
2023 2393 6.413818 GGTTCCATTTCGTTATTATTTCAGCG 59.586 38.462 0.00 0.00 0.00 5.18
2043 2420 1.668419 CCAAAGATGGCCTAACTCCG 58.332 55.000 3.32 0.00 40.58 4.63
2084 2461 1.401539 GCTTTTGACGCTTCACCATCC 60.402 52.381 0.00 0.00 0.00 3.51
2093 2470 1.068541 GCTTCACCATCCCGTGTTTTC 60.069 52.381 0.00 0.00 35.18 2.29
2103 2480 3.008330 TCCCGTGTTTTCGAGTTTTTGA 58.992 40.909 0.00 0.00 0.00 2.69
2147 2525 1.946768 CGAGGTGCTTTTGGAGTTTGA 59.053 47.619 0.00 0.00 0.00 2.69
2152 2530 0.664466 GCTTTTGGAGTTTGAGGCGC 60.664 55.000 0.00 0.00 0.00 6.53
2204 2589 4.403752 TGTGAGAGAGAGAGAGAGAGAGAG 59.596 50.000 0.00 0.00 0.00 3.20
2205 2590 4.646945 GTGAGAGAGAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
2206 2591 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
2207 2592 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2208 2593 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2209 2594 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2210 2595 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2211 2596 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2212 2597 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2213 2598 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2214 2599 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2228 2613 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2229 2614 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2252 2637 9.547753 GAGAGGTGTAGAATATATTTTTCTGCA 57.452 33.333 12.00 12.00 41.52 4.41
2253 2638 9.553064 AGAGGTGTAGAATATATTTTTCTGCAG 57.447 33.333 7.63 7.63 43.42 4.41
2254 2639 8.682936 AGGTGTAGAATATATTTTTCTGCAGG 57.317 34.615 15.13 0.00 43.42 4.85
2255 2640 8.275040 AGGTGTAGAATATATTTTTCTGCAGGT 58.725 33.333 15.13 0.00 43.42 4.00
2296 2682 9.941991 CTTCATATAGTGTTTTGCAATTTTTCG 57.058 29.630 0.00 0.00 0.00 3.46
2303 2689 4.749099 TGTTTTGCAATTTTTCGGGATCAG 59.251 37.500 0.00 0.00 0.00 2.90
2310 2696 7.382110 TGCAATTTTTCGGGATCAGATTTTAA 58.618 30.769 0.00 0.00 0.00 1.52
2317 2703 8.752005 TTTCGGGATCAGATTTTAAGATTCAT 57.248 30.769 0.00 0.00 0.00 2.57
2318 2704 7.734924 TCGGGATCAGATTTTAAGATTCATG 57.265 36.000 0.00 0.00 0.00 3.07
2342 2728 7.088905 TGCAAACAAAAAGTGATGCAAAAATT 58.911 26.923 0.00 0.00 44.62 1.82
2456 2845 5.041940 CCAATGCCAACCATTTTTGTTTTG 58.958 37.500 0.00 0.00 42.15 2.44
2502 2891 7.850935 TTCCTAGTTTAGGGTATATGACAGG 57.149 40.000 2.49 0.00 46.24 4.00
2508 2897 8.159229 AGTTTAGGGTATATGACAGGAAAGTT 57.841 34.615 0.00 0.00 0.00 2.66
2511 2900 9.816787 TTTAGGGTATATGACAGGAAAGTTTTT 57.183 29.630 0.00 0.00 0.00 1.94
2588 2977 2.287788 ACTCGCAAAAATGAGCACCAAG 60.288 45.455 0.00 0.00 35.61 3.61
2593 2982 4.033817 CGCAAAAATGAGCACCAAGAAAAA 59.966 37.500 0.00 0.00 0.00 1.94
2620 3009 8.887264 ACTACAATAATGTTCCCCACAAAATA 57.113 30.769 0.00 0.00 39.50 1.40
2625 3014 9.889128 CAATAATGTTCCCCACAAAATAGAAAT 57.111 29.630 0.00 0.00 39.50 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.056749 ACGAGACCAAAAACGAGCTCTAT 60.057 43.478 12.85 0.00 0.00 1.98
5 6 1.456165 GACGAGACCAAAAACGAGCTC 59.544 52.381 2.73 2.73 0.00 4.09
172 173 4.263572 CCGTGTCCAAGGCCACCA 62.264 66.667 5.01 0.00 0.00 4.17
286 287 0.895530 GGACATCCTCACCGACTTCA 59.104 55.000 0.00 0.00 0.00 3.02
293 294 2.901042 GACCCGGACATCCTCACC 59.099 66.667 0.73 0.00 0.00 4.02
335 336 0.102120 CACTGCTCGTCATCCTCTCC 59.898 60.000 0.00 0.00 0.00 3.71
336 337 0.814457 ACACTGCTCGTCATCCTCTC 59.186 55.000 0.00 0.00 0.00 3.20
337 338 2.130272 TACACTGCTCGTCATCCTCT 57.870 50.000 0.00 0.00 0.00 3.69
343 344 4.436986 CGTCTCTTATTACACTGCTCGTCA 60.437 45.833 0.00 0.00 0.00 4.35
353 354 1.801395 GCGCCAGCGTCTCTTATTACA 60.801 52.381 14.22 0.00 42.09 2.41
392 393 1.544537 CCTCCACCGATCACAAAACCA 60.545 52.381 0.00 0.00 0.00 3.67
397 398 1.589630 CGACCTCCACCGATCACAA 59.410 57.895 0.00 0.00 0.00 3.33
423 427 2.474816 GCGACTCCTACAAATAGCCTG 58.525 52.381 0.00 0.00 0.00 4.85
474 479 3.056607 GCTAAATTTGCTCCAGCTGGAAA 60.057 43.478 34.30 25.96 44.91 3.13
476 481 2.094675 GCTAAATTTGCTCCAGCTGGA 58.905 47.619 33.04 33.04 43.08 3.86
499 508 2.224475 TGGAAACAACAATGGCAATGGG 60.224 45.455 7.57 1.32 37.44 4.00
596 723 5.046950 GTCCACCAAAACCCTGCAAATAATA 60.047 40.000 0.00 0.00 0.00 0.98
597 724 3.906846 TCCACCAAAACCCTGCAAATAAT 59.093 39.130 0.00 0.00 0.00 1.28
598 725 3.070302 GTCCACCAAAACCCTGCAAATAA 59.930 43.478 0.00 0.00 0.00 1.40
626 757 5.935789 TGGACTTGGTAAATTACAGCTGTAC 59.064 40.000 26.02 16.48 0.00 2.90
649 780 4.322080 TGGTACTTTGTGTCTCACTCTG 57.678 45.455 0.00 0.00 35.11 3.35
693 827 6.465948 ACATGCATGCAAATTAGGAAAAAGA 58.534 32.000 26.68 0.00 0.00 2.52
694 828 6.730960 ACATGCATGCAAATTAGGAAAAAG 57.269 33.333 26.68 4.04 0.00 2.27
715 849 4.347583 TGCATATGGACATCAGGACATACA 59.652 41.667 4.56 0.00 0.00 2.29
731 865 3.091545 GGTATCCCCAACCATGCATATG 58.908 50.000 0.00 0.00 36.96 1.78
743 877 1.707989 TGCAACTCTTTGGTATCCCCA 59.292 47.619 0.00 0.00 43.27 4.96
746 1057 4.009675 TGTCATGCAACTCTTTGGTATCC 58.990 43.478 0.00 0.00 32.81 2.59
749 1060 3.814842 CAGTGTCATGCAACTCTTTGGTA 59.185 43.478 0.00 0.00 32.81 3.25
769 1080 2.289565 GAGGAAGAATTAACCGGCCAG 58.710 52.381 0.00 0.00 0.00 4.85
775 1086 5.295540 GCACATCTCTGAGGAAGAATTAACC 59.704 44.000 4.59 0.00 33.37 2.85
793 1104 1.882623 GCTAGGGCTAATTGGCACATC 59.117 52.381 19.02 2.77 43.83 3.06
794 1105 1.815408 CGCTAGGGCTAATTGGCACAT 60.815 52.381 19.02 6.73 43.83 3.21
821 1136 3.848830 CGTACCCACGCATGCACG 61.849 66.667 19.57 14.77 42.05 5.34
870 1186 7.809226 AAATCGATCGAGACATATGATGAAG 57.191 36.000 23.84 0.00 0.00 3.02
1216 1571 3.068590 CCCATATTGGCCTTGATCACAAC 59.931 47.826 3.32 0.00 35.79 3.32
1269 1624 0.761187 ACACGAGCATGGCATAGGAT 59.239 50.000 0.00 0.00 0.00 3.24
1414 1769 0.393808 ACAAATAAGTCGCCGGCCAT 60.394 50.000 23.46 7.03 0.00 4.40
1565 1920 1.658409 GACTTGGCAAGCACAACGC 60.658 57.895 26.45 4.48 42.91 4.84
1569 1924 0.746204 TGAACGACTTGGCAAGCACA 60.746 50.000 26.45 15.62 0.00 4.57
1708 2071 2.310538 GCTAGCATGGTGGCCTTATTT 58.689 47.619 21.29 0.00 0.00 1.40
1740 2103 6.488769 ACTAACAATACAACCGGGATATGA 57.511 37.500 6.32 0.00 0.00 2.15
1801 2165 6.977502 CACAATATCAACTCACAAACCACAAA 59.022 34.615 0.00 0.00 0.00 2.83
1901 2265 7.933033 ACATGTAACAATGCAAGGAAAAAGAAT 59.067 29.630 0.00 0.00 0.00 2.40
1983 2351 3.537580 TGGAACCACAACACTACTCAAC 58.462 45.455 0.00 0.00 0.00 3.18
2004 2374 5.493133 TGGCGCTGAAATAATAACGAAAT 57.507 34.783 7.64 0.00 0.00 2.17
2043 2420 2.511600 ACCAGCTTATCGCACGGC 60.512 61.111 0.00 0.00 42.61 5.68
2084 2461 3.179599 GCATCAAAAACTCGAAAACACGG 59.820 43.478 0.00 0.00 0.00 4.94
2103 2480 6.073222 CGTGGAGTTTTTAGTTTAGTGAGCAT 60.073 38.462 0.00 0.00 0.00 3.79
2147 2525 2.896854 CACACACACACAGCGCCT 60.897 61.111 2.29 0.00 0.00 5.52
2152 2530 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
2204 2589 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2205 2590 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2206 2591 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2207 2592 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2208 2593 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
2209 2594 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
2210 2595 3.964031 ACCTCTCTCTCTCTCTCTCTCTC 59.036 52.174 0.00 0.00 0.00 3.20
2211 2596 3.708631 CACCTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
2212 2597 3.452627 ACACCTCTCTCTCTCTCTCTCTC 59.547 52.174 0.00 0.00 0.00 3.20
2213 2598 3.454858 ACACCTCTCTCTCTCTCTCTCT 58.545 50.000 0.00 0.00 0.00 3.10
2214 2599 3.914426 ACACCTCTCTCTCTCTCTCTC 57.086 52.381 0.00 0.00 0.00 3.20
2228 2613 8.778358 CCTGCAGAAAAATATATTCTACACCTC 58.222 37.037 17.39 0.00 35.43 3.85
2229 2614 8.275040 ACCTGCAGAAAAATATATTCTACACCT 58.725 33.333 17.39 0.00 35.43 4.00
2263 2648 7.885297 TGCAAAACACTATATGAAGAGCTTTT 58.115 30.769 0.00 0.00 0.00 2.27
2266 2652 7.636150 ATTGCAAAACACTATATGAAGAGCT 57.364 32.000 1.71 0.00 0.00 4.09
2277 2663 5.263968 TCCCGAAAAATTGCAAAACACTA 57.736 34.783 1.71 0.00 0.00 2.74
2296 2682 7.281040 TGCATGAATCTTAAAATCTGATCCC 57.719 36.000 0.00 0.00 0.00 3.85
2310 2696 6.073440 GCATCACTTTTTGTTTGCATGAATCT 60.073 34.615 0.00 0.00 36.23 2.40
2317 2703 5.618056 TTTTGCATCACTTTTTGTTTGCA 57.382 30.435 0.00 0.00 40.96 4.08
2318 2704 7.509050 AATTTTTGCATCACTTTTTGTTTGC 57.491 28.000 0.00 0.00 36.53 3.68
2377 2763 4.080243 TGTGGTTCAGTAGACCTGGAAAAA 60.080 41.667 0.00 0.00 41.83 1.94
2385 2774 4.868314 AGTAAGTGTGGTTCAGTAGACC 57.132 45.455 0.00 0.00 0.00 3.85
2545 2934 6.012113 AGTGGGATTTTCTTTGATGTCATGA 58.988 36.000 0.00 0.00 0.00 3.07
2550 2939 3.191371 GCGAGTGGGATTTTCTTTGATGT 59.809 43.478 0.00 0.00 0.00 3.06
2551 2940 3.191162 TGCGAGTGGGATTTTCTTTGATG 59.809 43.478 0.00 0.00 0.00 3.07
2553 2942 2.857483 TGCGAGTGGGATTTTCTTTGA 58.143 42.857 0.00 0.00 0.00 2.69
2593 2982 7.604657 TTTGTGGGGAACATTATTGTAGTTT 57.395 32.000 0.00 0.00 38.99 2.66
2599 2988 9.889128 ATTTCTATTTTGTGGGGAACATTATTG 57.111 29.630 0.00 0.00 38.99 1.90
2625 3014 8.749841 ACGCACTTGTGCATAATTTATTTTTA 57.250 26.923 22.97 0.00 34.41 1.52
2626 3015 7.650834 ACGCACTTGTGCATAATTTATTTTT 57.349 28.000 22.97 0.00 34.41 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.