Multiple sequence alignment - TraesCS4B01G006600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G006600 chr4B 100.000 5445 0 0 1 5445 4515943 4521387 0.000000e+00 10056.0
1 TraesCS4B01G006600 chr4B 90.373 1475 98 22 2995 4446 4709749 4708296 0.000000e+00 1897.0
2 TraesCS4B01G006600 chr4B 81.874 651 44 34 2308 2902 4710391 4709759 1.060000e-131 481.0
3 TraesCS4B01G006600 chr4B 84.134 479 37 21 954 1425 4711577 4711131 1.400000e-115 427.0
4 TraesCS4B01G006600 chr4B 96.098 205 8 0 1425 1629 69428090 69428294 8.740000e-88 335.0
5 TraesCS4B01G006600 chr4B 78.788 396 36 27 1628 2008 4711140 4710778 7.100000e-54 222.0
6 TraesCS4B01G006600 chr4B 93.496 123 8 0 1 123 4713285 4713163 3.350000e-42 183.0
7 TraesCS4B01G006600 chr4B 90.588 85 8 0 5154 5238 4521054 4521138 4.460000e-21 113.0
8 TraesCS4B01G006600 chr4B 90.588 85 8 0 5112 5196 4521096 4521180 4.460000e-21 113.0
9 TraesCS4B01G006600 chr4D 90.804 2164 127 44 3316 5445 4135704 4133579 0.000000e+00 2828.0
10 TraesCS4B01G006600 chr4D 88.575 1663 132 34 3180 4798 3858469 3860117 0.000000e+00 1965.0
11 TraesCS4B01G006600 chr4D 86.996 669 70 12 3353 4012 3930242 3930902 0.000000e+00 737.0
12 TraesCS4B01G006600 chr4D 85.150 734 60 29 2184 2914 4137442 4136755 0.000000e+00 706.0
13 TraesCS4B01G006600 chr4D 80.957 982 61 48 342 1298 4139078 4138198 0.000000e+00 662.0
14 TraesCS4B01G006600 chr4D 82.997 794 65 32 664 1425 3856017 3856772 0.000000e+00 654.0
15 TraesCS4B01G006600 chr4D 84.211 608 46 25 2313 2883 3857588 3858182 3.710000e-151 545.0
16 TraesCS4B01G006600 chr4D 92.949 312 19 1 4135 4446 3949725 3950033 8.320000e-123 451.0
17 TraesCS4B01G006600 chr4D 89.020 255 7 9 342 589 3847800 3848040 4.120000e-76 296.0
18 TraesCS4B01G006600 chr4D 83.146 267 25 10 6 257 3847097 3847358 5.490000e-55 226.0
19 TraesCS4B01G006600 chr4D 94.203 138 8 0 1628 1765 4138119 4137982 1.540000e-50 211.0
20 TraesCS4B01G006600 chr4D 91.781 146 6 4 1628 1767 3856763 3856908 1.200000e-46 198.0
21 TraesCS4B01G006600 chr4D 80.800 250 15 14 1 227 4139657 4139418 1.210000e-36 165.0
22 TraesCS4B01G006600 chr4D 84.118 170 15 6 1840 2009 3857064 3857221 2.630000e-33 154.0
23 TraesCS4B01G006600 chr4D 92.045 88 7 0 5112 5199 4133869 4133782 2.060000e-24 124.0
24 TraesCS4B01G006600 chr4D 97.260 73 2 0 1353 1425 4138182 4138110 2.060000e-24 124.0
25 TraesCS4B01G006600 chr4D 92.647 68 5 0 5174 5241 4133891 4133824 1.250000e-16 99.0
26 TraesCS4B01G006600 chr4D 80.986 142 9 7 1842 1979 4137851 4137724 4.490000e-16 97.1
27 TraesCS4B01G006600 chr4A 90.224 2005 121 46 3477 5445 599894257 599892292 0.000000e+00 2547.0
28 TraesCS4B01G006600 chr4A 92.060 932 41 8 3555 4456 600387932 600387004 0.000000e+00 1280.0
29 TraesCS4B01G006600 chr4A 91.026 936 51 18 3534 4439 599732057 599732989 0.000000e+00 1232.0
30 TraesCS4B01G006600 chr4A 82.815 675 64 36 764 1425 599897755 599897120 1.710000e-154 556.0
31 TraesCS4B01G006600 chr4A 85.145 552 51 16 887 1425 599729565 599730098 2.230000e-148 536.0
32 TraesCS4B01G006600 chr4A 81.271 598 39 33 2313 2876 599730734 599731292 3.030000e-112 416.0
33 TraesCS4B01G006600 chr4A 94.203 207 1 1 1423 1629 731617243 731617048 6.850000e-79 305.0
34 TraesCS4B01G006600 chr4A 87.562 201 13 5 2669 2868 599895049 599894860 7.100000e-54 222.0
35 TraesCS4B01G006600 chr4A 92.857 140 7 3 1628 1765 599730089 599730227 3.330000e-47 200.0
36 TraesCS4B01G006600 chr4A 81.413 269 21 15 335 597 599729044 599729289 5.570000e-45 193.0
37 TraesCS4B01G006600 chr4A 83.495 206 19 8 6 200 599728493 599728694 1.560000e-40 178.0
38 TraesCS4B01G006600 chr4A 89.922 129 5 4 333 458 599898482 599898359 5.650000e-35 159.0
39 TraesCS4B01G006600 chr4A 89.655 116 8 1 1650 1765 600461100 600460989 1.580000e-30 145.0
40 TraesCS4B01G006600 chr4A 88.793 116 8 2 9 120 599899519 599899405 2.650000e-28 137.0
41 TraesCS4B01G006600 chr4A 92.045 88 7 0 5112 5199 599892583 599892496 2.060000e-24 124.0
42 TraesCS4B01G006600 chr4A 85.271 129 9 4 3360 3478 599894415 599894287 2.060000e-24 124.0
43 TraesCS4B01G006600 chr4A 81.250 176 14 10 1842 2012 600460863 600460702 2.060000e-24 124.0
44 TraesCS4B01G006600 chr4A 88.608 79 9 0 2918 2996 440873052 440872974 4.490000e-16 97.1
45 TraesCS4B01G006600 chr4A 88.525 61 6 1 199 258 599728799 599728859 7.570000e-09 73.1
46 TraesCS4B01G006600 chr4A 95.556 45 1 1 2135 2179 599896346 599896303 2.720000e-08 71.3
47 TraesCS4B01G006600 chr5B 88.589 999 54 21 3477 4452 641333732 641332771 0.000000e+00 1158.0
48 TraesCS4B01G006600 chr5B 82.961 493 44 17 2998 3472 641334958 641334488 5.080000e-110 409.0
49 TraesCS4B01G006600 chr5B 88.053 226 12 4 2314 2539 641338349 641338139 2.520000e-63 254.0
50 TraesCS4B01G006600 chr5B 84.000 175 19 5 1670 1843 641339043 641338877 5.650000e-35 159.0
51 TraesCS4B01G006600 chr7B 93.333 210 3 1 1421 1630 1757393 1757591 3.190000e-77 300.0
52 TraesCS4B01G006600 chr7B 94.118 204 1 1 1425 1628 540430393 540430201 3.190000e-77 300.0
53 TraesCS4B01G006600 chr7B 93.237 207 3 1 1423 1629 732975728 732975923 1.480000e-75 294.0
54 TraesCS4B01G006600 chr7B 92.754 207 4 1 1422 1628 618450285 618450480 6.900000e-74 289.0
55 TraesCS4B01G006600 chr7B 92.118 203 5 6 1428 1630 696615626 696615435 5.370000e-70 276.0
56 TraesCS4B01G006600 chr7B 88.571 140 4 2 1425 1563 717532440 717532312 5.650000e-35 159.0
57 TraesCS4B01G006600 chr7B 89.412 85 9 0 2912 2996 144701019 144700935 2.070000e-19 108.0
58 TraesCS4B01G006600 chr2B 92.891 211 3 2 1420 1629 49690523 49690722 4.120000e-76 296.0
59 TraesCS4B01G006600 chr2B 93.237 207 3 1 1422 1628 77943599 77943794 1.480000e-75 294.0
60 TraesCS4B01G006600 chr3B 93.237 207 3 1 1423 1629 141816201 141816006 1.480000e-75 294.0
61 TraesCS4B01G006600 chr3B 92.130 216 4 3 1416 1629 764366280 764366484 5.330000e-75 292.0
62 TraesCS4B01G006600 chr3B 89.655 87 9 0 2910 2996 796016712 796016798 1.600000e-20 111.0
63 TraesCS4B01G006600 chr3B 84.848 99 10 5 2904 2999 781369883 781369787 1.610000e-15 95.3
64 TraesCS4B01G006600 chrUn 91.705 217 6 2 1413 1628 159075953 159076158 1.920000e-74 291.0
65 TraesCS4B01G006600 chr1B 93.171 205 3 1 1425 1629 588495260 588495067 1.920000e-74 291.0
66 TraesCS4B01G006600 chr1A 93.171 205 3 1 1425 1629 6671690 6671497 1.920000e-74 291.0
67 TraesCS4B01G006600 chr1A 86.667 60 8 0 2910 2969 558541949 558541890 3.520000e-07 67.6
68 TraesCS4B01G006600 chr7A 90.868 219 9 1 1419 1637 2045666 2045459 3.210000e-72 283.0
69 TraesCS4B01G006600 chr7A 94.595 37 2 0 2940 2976 47616959 47616995 2.120000e-04 58.4
70 TraesCS4B01G006600 chr3D 88.172 93 11 0 2911 3003 321876085 321876177 1.600000e-20 111.0
71 TraesCS4B01G006600 chr1D 97.222 36 1 0 2875 2910 470502594 470502629 1.640000e-05 62.1
72 TraesCS4B01G006600 chr6A 100.000 28 0 0 2874 2901 49851464 49851437 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G006600 chr4B 4515943 4521387 5444 False 3427.333333 10056 93.725333 1 5445 3 chr4B.!!$F2 5444
1 TraesCS4B01G006600 chr4B 4708296 4713285 4989 True 642.000000 1897 85.733000 1 4446 5 chr4B.!!$R1 4445
2 TraesCS4B01G006600 chr4D 3930242 3930902 660 False 737.000000 737 86.996000 3353 4012 1 chr4D.!!$F1 659
3 TraesCS4B01G006600 chr4D 3856017 3860117 4100 False 703.200000 1965 86.336400 664 4798 5 chr4D.!!$F4 4134
4 TraesCS4B01G006600 chr4D 4133579 4139657 6078 True 557.344444 2828 88.316889 1 5445 9 chr4D.!!$R1 5444
5 TraesCS4B01G006600 chr4D 3847097 3848040 943 False 261.000000 296 86.083000 6 589 2 chr4D.!!$F3 583
6 TraesCS4B01G006600 chr4A 600387004 600387932 928 True 1280.000000 1280 92.060000 3555 4456 1 chr4A.!!$R2 901
7 TraesCS4B01G006600 chr4A 599892292 599899519 7227 True 492.537500 2547 89.023500 9 5445 8 chr4A.!!$R4 5436
8 TraesCS4B01G006600 chr4A 599728493 599732989 4496 False 404.014286 1232 86.247429 6 4439 7 chr4A.!!$F1 4433
9 TraesCS4B01G006600 chr5B 641332771 641339043 6272 True 495.000000 1158 85.900750 1670 4452 4 chr5B.!!$R1 2782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 1840 0.037790 GTCCTGACCAGAGCAGACAC 60.038 60.0 0.00 0.00 35.39 3.67 F
851 2666 0.107703 TGTATGGCCTACAGCTGCAC 60.108 55.0 15.27 0.00 43.05 4.57 F
1462 3383 0.032130 CTAAGCATCTTAGCGCCGGA 59.968 55.0 5.05 0.00 40.15 5.14 F
1935 3983 0.033796 AGGTCCGTCCGTCCAATAGA 60.034 55.0 0.00 0.00 41.99 1.98 F
2214 4834 0.246635 ACACGACATGGGAGTACTGC 59.753 55.0 5.70 5.70 0.00 4.40 F
2228 4848 0.315886 TACTGCACGTACACCACAGG 59.684 55.0 0.00 0.00 32.60 4.00 F
2232 4852 0.320073 GCACGTACACCACAGGCTTA 60.320 55.0 0.00 0.00 0.00 3.09 F
2813 8968 0.597072 GTAAGATACTCCCGGCTCCG 59.403 60.0 0.00 0.48 39.44 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1443 3364 0.032130 TCCGGCGCTAAGATGCTTAG 59.968 55.000 7.64 9.30 0.00 2.18 R
2837 8998 0.033920 CTTTTGTGCTGGAAAGGGCC 59.966 55.000 0.00 0.00 30.99 5.80 R
3236 9535 0.319900 CACCCCGATCAATAGCTCCG 60.320 60.000 0.00 0.00 0.00 4.63 R
3531 11614 0.034198 TCCCGCGTCAGATCAAAACA 59.966 50.000 4.92 0.00 0.00 2.83 R
3538 11621 0.610174 ATGCATATCCCGCGTCAGAT 59.390 50.000 4.92 7.07 0.00 2.90 R
3927 12097 1.304713 ACCACCGTCGGGATGTACT 60.305 57.895 17.28 0.00 36.97 2.73 R
4223 12393 4.320057 GCTCTTGAACCTCTTGTTGTCATG 60.320 45.833 0.00 0.00 37.29 3.07 R
4697 12878 0.940126 CAATGCTCGGCTTCGCTTAT 59.060 50.000 0.00 0.00 0.00 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 111 6.125029 CCACAGGAATGGAATCATCTTAACT 58.875 40.000 0.00 0.00 43.02 2.24
103 112 7.282585 CCACAGGAATGGAATCATCTTAACTA 58.717 38.462 0.00 0.00 43.02 2.24
130 139 8.846943 TCTTGAGAGTATTTTTATGTTGCTCA 57.153 30.769 0.00 0.00 0.00 4.26
135 163 8.261492 AGAGTATTTTTATGTTGCTCAGAGTG 57.739 34.615 0.00 0.00 0.00 3.51
145 275 2.309613 TGCTCAGAGTGGCACAAATTT 58.690 42.857 21.41 0.00 44.16 1.82
174 304 5.049336 GGGAGAAACTGCTAGAGAAAACAAC 60.049 44.000 0.00 0.00 0.00 3.32
176 306 6.205658 GGAGAAACTGCTAGAGAAAACAACAT 59.794 38.462 0.00 0.00 0.00 2.71
177 307 7.387948 GGAGAAACTGCTAGAGAAAACAACATA 59.612 37.037 0.00 0.00 0.00 2.29
178 308 8.316640 AGAAACTGCTAGAGAAAACAACATAG 57.683 34.615 0.00 0.00 0.00 2.23
247 988 8.776376 AACAATTGTTTTTGAACTGAACTGAT 57.224 26.923 18.13 0.00 33.93 2.90
259 1000 8.870160 TGAACTGAACTGATAAACAAATTTGG 57.130 30.769 21.74 5.11 0.00 3.28
265 1006 7.505585 TGAACTGATAAACAAATTTGGAGGACT 59.494 33.333 21.74 2.01 0.00 3.85
267 1008 6.024552 TGATAAACAAATTTGGAGGACTGC 57.975 37.500 21.74 4.74 0.00 4.40
268 1009 3.369546 AAACAAATTTGGAGGACTGCG 57.630 42.857 21.74 0.00 0.00 5.18
271 1012 2.034558 ACAAATTTGGAGGACTGCGTTG 59.965 45.455 21.74 0.00 0.00 4.10
275 1016 0.534203 TTGGAGGACTGCGTTGGAAC 60.534 55.000 0.00 0.00 0.00 3.62
281 1022 0.951558 GACTGCGTTGGAACCACAAT 59.048 50.000 0.00 0.00 32.24 2.71
282 1023 2.147958 GACTGCGTTGGAACCACAATA 58.852 47.619 0.00 0.00 32.24 1.90
284 1025 0.878416 TGCGTTGGAACCACAATAGC 59.122 50.000 0.00 0.00 37.37 2.97
285 1026 1.165270 GCGTTGGAACCACAATAGCT 58.835 50.000 0.00 0.00 35.47 3.32
286 1027 1.135689 GCGTTGGAACCACAATAGCTG 60.136 52.381 0.00 0.00 35.47 4.24
287 1028 1.468520 CGTTGGAACCACAATAGCTGG 59.531 52.381 0.00 0.00 32.24 4.85
288 1029 2.514803 GTTGGAACCACAATAGCTGGT 58.485 47.619 0.00 0.00 44.39 4.00
289 1030 2.198827 TGGAACCACAATAGCTGGTG 57.801 50.000 0.00 1.94 41.45 4.17
296 1037 1.278985 CACAATAGCTGGTGGAGGTCA 59.721 52.381 0.00 0.00 33.31 4.02
301 1042 3.476386 CTGGTGGAGGTCAGCTGT 58.524 61.111 14.67 0.00 43.76 4.40
302 1043 2.671145 CTGGTGGAGGTCAGCTGTA 58.329 57.895 14.67 0.00 43.76 2.74
306 1634 1.279271 GGTGGAGGTCAGCTGTATGTT 59.721 52.381 14.67 0.00 40.48 2.71
315 1643 3.739300 GTCAGCTGTATGTTTGTGTACGT 59.261 43.478 14.67 0.00 0.00 3.57
316 1644 3.738791 TCAGCTGTATGTTTGTGTACGTG 59.261 43.478 14.67 0.00 0.00 4.49
317 1645 2.478894 AGCTGTATGTTTGTGTACGTGC 59.521 45.455 0.00 0.00 0.00 5.34
318 1646 2.478894 GCTGTATGTTTGTGTACGTGCT 59.521 45.455 4.97 0.00 0.00 4.40
319 1647 3.676172 GCTGTATGTTTGTGTACGTGCTA 59.324 43.478 4.97 0.00 0.00 3.49
321 1649 4.239304 TGTATGTTTGTGTACGTGCTAGG 58.761 43.478 4.97 0.00 0.00 3.02
322 1650 2.157834 TGTTTGTGTACGTGCTAGGG 57.842 50.000 4.97 0.00 0.00 3.53
324 1652 0.682852 TTTGTGTACGTGCTAGGGCT 59.317 50.000 4.97 0.00 39.59 5.19
325 1653 1.548081 TTGTGTACGTGCTAGGGCTA 58.452 50.000 4.97 0.00 39.59 3.93
326 1654 1.100510 TGTGTACGTGCTAGGGCTAG 58.899 55.000 4.97 0.00 39.59 3.42
337 1665 4.862823 GGGCTAGCTCCCCGTCCT 62.863 72.222 15.72 0.00 40.51 3.85
497 1840 0.037790 GTCCTGACCAGAGCAGACAC 60.038 60.000 0.00 0.00 35.39 3.67
499 1842 0.320247 CCTGACCAGAGCAGACACAC 60.320 60.000 0.00 0.00 35.39 3.82
500 1843 0.665670 CTGACCAGAGCAGACACACG 60.666 60.000 0.00 0.00 35.39 4.49
501 1844 1.373497 GACCAGAGCAGACACACGG 60.373 63.158 0.00 0.00 0.00 4.94
502 1845 2.740055 CCAGAGCAGACACACGGC 60.740 66.667 0.00 0.00 39.85 5.68
503 1846 2.740055 CAGAGCAGACACACGGCC 60.740 66.667 0.00 0.00 40.39 6.13
504 1847 4.363990 AGAGCAGACACACGGCCG 62.364 66.667 26.86 26.86 40.39 6.13
606 1973 4.032900 CCTGAGTCAAATATACACACACGC 59.967 45.833 0.00 0.00 0.00 5.34
651 2414 8.443937 AGAAGAATGTATTAAAAACAGCGTCTC 58.556 33.333 1.21 0.00 0.00 3.36
673 2436 6.692681 TCTCGTAATACGTAAATTGTACCAGC 59.307 38.462 12.78 0.00 43.14 4.85
713 2486 3.214123 CACGCATGCATGGAGGGG 61.214 66.667 27.34 14.14 0.00 4.79
715 2488 3.214123 CGCATGCATGGAGGGGTG 61.214 66.667 27.34 3.69 0.00 4.61
722 2495 0.536006 GCATGGAGGGGTGCAGATAC 60.536 60.000 0.00 0.00 40.94 2.24
725 2498 2.109181 GAGGGGTGCAGATACGGC 59.891 66.667 0.00 0.00 0.00 5.68
746 2547 3.803082 CTGACATGGGCGCCGTTG 61.803 66.667 22.54 22.04 0.00 4.10
748 2549 4.101790 GACATGGGCGCCGTTGTG 62.102 66.667 30.45 22.53 0.00 3.33
761 2562 0.382636 CGTTGTGCGGTTTCGAGAAC 60.383 55.000 0.00 0.00 39.00 3.01
827 2632 0.390340 GTGTTCTCATCGCAGCCAGA 60.390 55.000 0.00 0.00 0.00 3.86
849 2664 1.517242 GATGTATGGCCTACAGCTGC 58.483 55.000 15.27 0.00 43.44 5.25
850 2665 0.839277 ATGTATGGCCTACAGCTGCA 59.161 50.000 15.27 3.14 43.44 4.41
851 2666 0.107703 TGTATGGCCTACAGCTGCAC 60.108 55.000 15.27 0.00 43.05 4.57
852 2667 0.815615 GTATGGCCTACAGCTGCACC 60.816 60.000 15.27 10.73 43.05 5.01
1077 2973 0.872021 GTAAGCAGCCAGTCGATCCG 60.872 60.000 0.00 0.00 0.00 4.18
1081 2977 3.518998 AGCCAGTCGATCCGTCCG 61.519 66.667 0.00 0.00 0.00 4.79
1106 3008 6.323739 GGGCCATAAAAGAGACCATTTATTGA 59.676 38.462 4.39 0.00 31.17 2.57
1142 3046 1.129998 CGCTGGCTCACTTCAATTCTG 59.870 52.381 0.00 0.00 0.00 3.02
1143 3047 1.135460 GCTGGCTCACTTCAATTCTGC 60.135 52.381 0.00 0.00 0.00 4.26
1144 3048 1.471684 CTGGCTCACTTCAATTCTGCC 59.528 52.381 0.00 0.00 39.33 4.85
1145 3049 1.074405 TGGCTCACTTCAATTCTGCCT 59.926 47.619 0.00 0.00 39.57 4.75
1153 3057 0.176680 TCAATTCTGCCTCGCTCTCC 59.823 55.000 0.00 0.00 0.00 3.71
1193 3109 2.775911 TTGATTGCCCTCTGTCTCTG 57.224 50.000 0.00 0.00 0.00 3.35
1203 3121 3.119173 CCCTCTGTCTCTGTGATGAACTC 60.119 52.174 0.00 0.00 0.00 3.01
1204 3122 3.763360 CCTCTGTCTCTGTGATGAACTCT 59.237 47.826 0.00 0.00 0.00 3.24
1216 3137 1.142097 GAACTCTAGGCCTGGCGAC 59.858 63.158 17.99 3.92 0.00 5.19
1323 3244 1.293498 CAGGGGAGAAGTCGTGGTG 59.707 63.158 0.00 0.00 0.00 4.17
1331 3252 1.902508 AGAAGTCGTGGTGGTCATCAT 59.097 47.619 0.00 0.00 0.00 2.45
1332 3253 2.093973 AGAAGTCGTGGTGGTCATCATC 60.094 50.000 0.00 0.00 0.00 2.92
1333 3254 1.266178 AGTCGTGGTGGTCATCATCA 58.734 50.000 0.00 0.00 33.36 3.07
1430 3351 4.800554 CGGGAGCTGACCAAAGTT 57.199 55.556 0.00 0.00 0.00 2.66
1431 3352 3.021451 CGGGAGCTGACCAAAGTTT 57.979 52.632 0.00 0.00 0.00 2.66
1432 3353 1.318576 CGGGAGCTGACCAAAGTTTT 58.681 50.000 0.00 0.00 0.00 2.43
1433 3354 2.500229 CGGGAGCTGACCAAAGTTTTA 58.500 47.619 0.00 0.00 0.00 1.52
1434 3355 2.882137 CGGGAGCTGACCAAAGTTTTAA 59.118 45.455 0.00 0.00 0.00 1.52
1435 3356 3.316868 CGGGAGCTGACCAAAGTTTTAAA 59.683 43.478 0.00 0.00 0.00 1.52
1436 3357 4.022329 CGGGAGCTGACCAAAGTTTTAAAT 60.022 41.667 0.00 0.00 0.00 1.40
1437 3358 5.182380 CGGGAGCTGACCAAAGTTTTAAATA 59.818 40.000 0.00 0.00 0.00 1.40
1438 3359 6.294286 CGGGAGCTGACCAAAGTTTTAAATAA 60.294 38.462 0.00 0.00 0.00 1.40
1439 3360 6.866770 GGGAGCTGACCAAAGTTTTAAATAAC 59.133 38.462 0.00 0.00 0.00 1.89
1440 3361 6.581166 GGAGCTGACCAAAGTTTTAAATAACG 59.419 38.462 0.00 0.00 33.26 3.18
1441 3362 5.918576 AGCTGACCAAAGTTTTAAATAACGC 59.081 36.000 0.00 0.00 33.26 4.84
1442 3363 5.164225 GCTGACCAAAGTTTTAAATAACGCG 60.164 40.000 3.53 3.53 33.26 6.01
1443 3364 4.676018 TGACCAAAGTTTTAAATAACGCGC 59.324 37.500 5.73 0.00 33.26 6.86
1444 3365 4.862350 ACCAAAGTTTTAAATAACGCGCT 58.138 34.783 5.73 0.00 33.26 5.92
1445 3366 5.999721 ACCAAAGTTTTAAATAACGCGCTA 58.000 33.333 5.73 0.00 33.26 4.26
1446 3367 6.437094 ACCAAAGTTTTAAATAACGCGCTAA 58.563 32.000 5.73 0.00 33.26 3.09
1447 3368 6.579666 ACCAAAGTTTTAAATAACGCGCTAAG 59.420 34.615 5.73 0.00 33.26 2.18
1448 3369 6.447009 CAAAGTTTTAAATAACGCGCTAAGC 58.553 36.000 5.73 0.00 43.95 3.09
1460 3381 1.856012 GCTAAGCATCTTAGCGCCG 59.144 57.895 18.95 0.00 38.12 6.46
1461 3382 1.560860 GCTAAGCATCTTAGCGCCGG 61.561 60.000 18.95 0.00 38.12 6.13
1462 3383 0.032130 CTAAGCATCTTAGCGCCGGA 59.968 55.000 5.05 0.00 40.15 5.14
1463 3384 0.249322 TAAGCATCTTAGCGCCGGAC 60.249 55.000 5.05 0.00 40.15 4.79
1464 3385 2.925162 AAGCATCTTAGCGCCGGACC 62.925 60.000 5.05 0.00 40.15 4.46
1465 3386 2.815308 CATCTTAGCGCCGGACCT 59.185 61.111 5.05 1.80 0.00 3.85
1466 3387 1.300233 CATCTTAGCGCCGGACCTC 60.300 63.158 5.05 0.00 0.00 3.85
1467 3388 1.455959 ATCTTAGCGCCGGACCTCT 60.456 57.895 5.05 0.00 0.00 3.69
1468 3389 1.043673 ATCTTAGCGCCGGACCTCTT 61.044 55.000 5.05 0.00 0.00 2.85
1469 3390 1.218316 CTTAGCGCCGGACCTCTTT 59.782 57.895 5.05 0.00 0.00 2.52
1470 3391 0.806492 CTTAGCGCCGGACCTCTTTC 60.806 60.000 5.05 0.00 0.00 2.62
1471 3392 1.537814 TTAGCGCCGGACCTCTTTCA 61.538 55.000 5.05 0.00 0.00 2.69
1472 3393 1.537814 TAGCGCCGGACCTCTTTCAA 61.538 55.000 5.05 0.00 0.00 2.69
1473 3394 1.964373 GCGCCGGACCTCTTTCAAA 60.964 57.895 5.05 0.00 0.00 2.69
1474 3395 1.305930 GCGCCGGACCTCTTTCAAAT 61.306 55.000 5.05 0.00 0.00 2.32
1475 3396 0.447801 CGCCGGACCTCTTTCAAATG 59.552 55.000 5.05 0.00 0.00 2.32
1476 3397 0.171231 GCCGGACCTCTTTCAAATGC 59.829 55.000 5.05 0.00 0.00 3.56
1477 3398 1.826385 CCGGACCTCTTTCAAATGCT 58.174 50.000 0.00 0.00 0.00 3.79
1478 3399 2.939640 GCCGGACCTCTTTCAAATGCTA 60.940 50.000 5.05 0.00 0.00 3.49
1479 3400 3.545703 CCGGACCTCTTTCAAATGCTAT 58.454 45.455 0.00 0.00 0.00 2.97
1480 3401 4.703897 CCGGACCTCTTTCAAATGCTATA 58.296 43.478 0.00 0.00 0.00 1.31
1481 3402 4.752101 CCGGACCTCTTTCAAATGCTATAG 59.248 45.833 0.00 0.00 0.00 1.31
1482 3403 4.212214 CGGACCTCTTTCAAATGCTATAGC 59.788 45.833 18.18 18.18 42.50 2.97
1483 3404 4.212214 GGACCTCTTTCAAATGCTATAGCG 59.788 45.833 19.55 5.67 45.83 4.26
1484 3405 4.770795 ACCTCTTTCAAATGCTATAGCGT 58.229 39.130 19.55 16.84 45.83 5.07
1485 3406 4.572389 ACCTCTTTCAAATGCTATAGCGTG 59.428 41.667 20.02 16.47 45.83 5.34
1486 3407 4.521943 CTCTTTCAAATGCTATAGCGTGC 58.478 43.478 20.02 0.00 45.83 5.34
1487 3408 4.191544 TCTTTCAAATGCTATAGCGTGCT 58.808 39.130 20.02 7.98 45.83 4.40
1488 3409 5.356426 TCTTTCAAATGCTATAGCGTGCTA 58.644 37.500 20.02 3.73 45.83 3.49
1489 3410 5.991606 TCTTTCAAATGCTATAGCGTGCTAT 59.008 36.000 20.02 17.65 45.83 2.97
1490 3411 7.151976 TCTTTCAAATGCTATAGCGTGCTATA 58.848 34.615 20.02 17.96 45.83 1.31
1496 3417 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
1497 3418 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
1530 3451 5.618561 GCTATAGCGCGCTATTTAAAATGT 58.381 37.500 46.76 28.88 39.65 2.71
1531 3452 6.077838 GCTATAGCGCGCTATTTAAAATGTT 58.922 36.000 46.76 28.22 39.65 2.71
1532 3453 6.577427 GCTATAGCGCGCTATTTAAAATGTTT 59.423 34.615 46.76 27.75 39.65 2.83
1533 3454 6.732181 ATAGCGCGCTATTTAAAATGTTTG 57.268 33.333 40.32 0.00 35.92 2.93
1534 3455 4.481463 AGCGCGCTATTTAAAATGTTTGT 58.519 34.783 35.79 0.63 0.00 2.83
1535 3456 4.920927 AGCGCGCTATTTAAAATGTTTGTT 59.079 33.333 35.79 0.18 0.00 2.83
1536 3457 5.060446 AGCGCGCTATTTAAAATGTTTGTTC 59.940 36.000 35.79 0.00 0.00 3.18
1537 3458 5.164138 GCGCGCTATTTAAAATGTTTGTTCA 60.164 36.000 26.67 0.00 0.00 3.18
1538 3459 6.453659 GCGCGCTATTTAAAATGTTTGTTCAT 60.454 34.615 26.67 0.00 0.00 2.57
1539 3460 7.444245 CGCGCTATTTAAAATGTTTGTTCATT 58.556 30.769 5.56 0.00 39.35 2.57
1540 3461 7.949428 CGCGCTATTTAAAATGTTTGTTCATTT 59.051 29.630 5.56 0.00 45.94 2.32
1541 3462 9.039500 GCGCTATTTAAAATGTTTGTTCATTTG 57.961 29.630 0.00 0.00 44.10 2.32
1549 3470 6.676237 AATGTTTGTTCATTTGTTTGGACC 57.324 33.333 0.00 0.00 34.86 4.46
1550 3471 4.177026 TGTTTGTTCATTTGTTTGGACCG 58.823 39.130 0.00 0.00 0.00 4.79
1551 3472 4.082190 TGTTTGTTCATTTGTTTGGACCGA 60.082 37.500 0.00 0.00 0.00 4.69
1552 3473 4.720649 TTGTTCATTTGTTTGGACCGAA 57.279 36.364 0.00 0.00 0.00 4.30
1553 3474 4.300189 TGTTCATTTGTTTGGACCGAAG 57.700 40.909 0.00 0.00 0.00 3.79
1554 3475 3.697045 TGTTCATTTGTTTGGACCGAAGT 59.303 39.130 0.00 0.00 0.00 3.01
1555 3476 4.201970 TGTTCATTTGTTTGGACCGAAGTC 60.202 41.667 0.00 0.00 42.73 3.01
1556 3477 3.815809 TCATTTGTTTGGACCGAAGTCT 58.184 40.909 0.00 0.00 43.05 3.24
1557 3478 3.813166 TCATTTGTTTGGACCGAAGTCTC 59.187 43.478 0.00 0.00 43.05 3.36
1558 3479 3.553828 TTTGTTTGGACCGAAGTCTCT 57.446 42.857 0.00 0.00 43.05 3.10
1559 3480 3.553828 TTGTTTGGACCGAAGTCTCTT 57.446 42.857 0.00 0.00 43.05 2.85
1560 3481 4.675976 TTGTTTGGACCGAAGTCTCTTA 57.324 40.909 0.00 0.00 43.05 2.10
1561 3482 4.252971 TGTTTGGACCGAAGTCTCTTAG 57.747 45.455 0.00 0.00 43.05 2.18
1562 3483 2.994578 GTTTGGACCGAAGTCTCTTAGC 59.005 50.000 0.00 0.00 43.05 3.09
1563 3484 0.809385 TGGACCGAAGTCTCTTAGCG 59.191 55.000 0.00 0.00 43.05 4.26
1564 3485 0.525882 GGACCGAAGTCTCTTAGCGC 60.526 60.000 0.00 0.00 43.05 5.92
1565 3486 0.170561 GACCGAAGTCTCTTAGCGCA 59.829 55.000 11.47 0.00 40.10 6.09
1566 3487 0.601558 ACCGAAGTCTCTTAGCGCAA 59.398 50.000 11.47 0.50 0.00 4.85
1567 3488 1.272781 CCGAAGTCTCTTAGCGCAAG 58.727 55.000 11.47 11.67 35.38 4.01
1568 3489 1.135373 CCGAAGTCTCTTAGCGCAAGA 60.135 52.381 11.47 15.40 41.10 3.02
1569 3490 1.914700 CGAAGTCTCTTAGCGCAAGAC 59.085 52.381 11.47 16.26 38.39 3.01
1570 3491 2.263945 GAAGTCTCTTAGCGCAAGACC 58.736 52.381 21.13 13.52 40.21 3.85
1571 3492 1.551452 AGTCTCTTAGCGCAAGACCT 58.449 50.000 21.13 14.93 40.21 3.85
1572 3493 1.896465 AGTCTCTTAGCGCAAGACCTT 59.104 47.619 21.13 7.87 40.21 3.50
1573 3494 2.300437 AGTCTCTTAGCGCAAGACCTTT 59.700 45.455 21.13 7.34 40.21 3.11
1574 3495 3.067833 GTCTCTTAGCGCAAGACCTTTT 58.932 45.455 11.47 0.00 38.39 2.27
1575 3496 3.067106 TCTCTTAGCGCAAGACCTTTTG 58.933 45.455 11.47 4.34 38.39 2.44
1576 3497 2.808543 CTCTTAGCGCAAGACCTTTTGT 59.191 45.455 11.47 0.00 38.39 2.83
1577 3498 3.994392 CTCTTAGCGCAAGACCTTTTGTA 59.006 43.478 11.47 0.00 38.39 2.41
1578 3499 4.382291 TCTTAGCGCAAGACCTTTTGTAA 58.618 39.130 11.47 0.00 38.39 2.41
1579 3500 4.817464 TCTTAGCGCAAGACCTTTTGTAAA 59.183 37.500 11.47 0.00 38.39 2.01
1580 3501 3.349488 AGCGCAAGACCTTTTGTAAAC 57.651 42.857 11.47 0.00 43.02 2.01
1581 3502 2.041244 GCGCAAGACCTTTTGTAAACG 58.959 47.619 0.30 0.00 43.02 3.60
1582 3503 2.041244 CGCAAGACCTTTTGTAAACGC 58.959 47.619 0.00 0.00 43.02 4.84
1583 3504 2.286772 CGCAAGACCTTTTGTAAACGCT 60.287 45.455 0.00 0.00 43.02 5.07
1584 3505 3.059461 CGCAAGACCTTTTGTAAACGCTA 60.059 43.478 0.00 0.00 43.02 4.26
1585 3506 4.378046 CGCAAGACCTTTTGTAAACGCTAT 60.378 41.667 0.00 0.00 43.02 2.97
1586 3507 5.163933 CGCAAGACCTTTTGTAAACGCTATA 60.164 40.000 0.00 0.00 43.02 1.31
1587 3508 6.248631 GCAAGACCTTTTGTAAACGCTATAG 58.751 40.000 0.00 0.00 0.00 1.31
1588 3509 6.248631 CAAGACCTTTTGTAAACGCTATAGC 58.751 40.000 15.09 15.09 37.78 2.97
1602 3523 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
1603 3524 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
1623 3544 4.406001 GCTATAGCGGGCTATTTGAAAC 57.594 45.455 17.49 0.05 39.65 2.78
1624 3545 3.813166 GCTATAGCGGGCTATTTGAAACA 59.187 43.478 17.49 0.00 39.65 2.83
1625 3546 4.083802 GCTATAGCGGGCTATTTGAAACAG 60.084 45.833 17.49 8.76 39.65 3.16
1626 3547 2.200373 AGCGGGCTATTTGAAACAGT 57.800 45.000 0.00 0.00 0.00 3.55
1627 3548 1.812571 AGCGGGCTATTTGAAACAGTG 59.187 47.619 0.00 0.00 0.00 3.66
1628 3549 1.135402 GCGGGCTATTTGAAACAGTGG 60.135 52.381 0.00 0.00 0.00 4.00
1629 3550 2.432444 CGGGCTATTTGAAACAGTGGA 58.568 47.619 0.00 0.00 0.00 4.02
1630 3551 2.420022 CGGGCTATTTGAAACAGTGGAG 59.580 50.000 0.00 0.00 0.00 3.86
1631 3552 2.164422 GGGCTATTTGAAACAGTGGAGC 59.836 50.000 0.00 0.00 0.00 4.70
1632 3553 3.084786 GGCTATTTGAAACAGTGGAGCT 58.915 45.455 0.00 0.00 0.00 4.09
1672 3593 1.550130 CCTACGGCAAGACCTTCCCA 61.550 60.000 0.00 0.00 35.61 4.37
1767 3697 2.292257 TGCTCCTCCTTTGCTAGTCCTA 60.292 50.000 0.00 0.00 0.00 2.94
1769 3699 3.637769 CTCCTCCTTTGCTAGTCCTAGT 58.362 50.000 3.45 0.00 35.65 2.57
1771 3701 3.269906 TCCTCCTTTGCTAGTCCTAGTCT 59.730 47.826 3.45 0.00 35.65 3.24
1775 3705 3.440228 CTTTGCTAGTCCTAGTCTTCGC 58.560 50.000 3.45 0.00 35.65 4.70
1776 3706 2.421751 TGCTAGTCCTAGTCTTCGCT 57.578 50.000 3.45 0.00 35.65 4.93
1777 3707 2.017782 TGCTAGTCCTAGTCTTCGCTG 58.982 52.381 3.45 0.00 35.65 5.18
1778 3708 2.018515 GCTAGTCCTAGTCTTCGCTGT 58.981 52.381 3.45 0.00 35.65 4.40
1779 3709 2.424246 GCTAGTCCTAGTCTTCGCTGTT 59.576 50.000 3.45 0.00 35.65 3.16
1780 3710 3.626670 GCTAGTCCTAGTCTTCGCTGTTA 59.373 47.826 3.45 0.00 35.65 2.41
1786 3732 3.791887 CCTAGTCTTCGCTGTTAATCACG 59.208 47.826 0.00 0.00 0.00 4.35
1797 3743 4.499758 GCTGTTAATCACGACTAGTAGCAC 59.500 45.833 2.52 0.00 0.00 4.40
1799 3745 2.846039 AATCACGACTAGTAGCACGG 57.154 50.000 17.37 9.42 0.00 4.94
1800 3746 0.381089 ATCACGACTAGTAGCACGGC 59.619 55.000 17.37 0.00 0.00 5.68
1802 3748 2.024305 CGACTAGTAGCACGGCGG 59.976 66.667 13.24 0.66 0.00 6.13
1803 3749 2.278661 GACTAGTAGCACGGCGGC 60.279 66.667 13.24 12.27 0.00 6.53
1862 3898 1.812571 GTGCAGTGGTGGGAGTAAATG 59.187 52.381 0.00 0.00 0.00 2.32
1865 3901 1.812571 CAGTGGTGGGAGTAAATGCAC 59.187 52.381 0.00 0.00 0.00 4.57
1873 3914 0.648958 GAGTAAATGCACGGGCGTAC 59.351 55.000 3.93 7.37 45.35 3.67
1927 3975 2.679287 GAGGGAAGGTCCGTCCGT 60.679 66.667 17.64 17.64 43.63 4.69
1928 3976 2.679287 AGGGAAGGTCCGTCCGTC 60.679 66.667 16.65 5.04 42.57 4.79
1931 3979 3.053828 GAAGGTCCGTCCGTCCAA 58.946 61.111 0.00 0.00 41.99 3.53
1932 3980 1.595357 GAAGGTCCGTCCGTCCAAT 59.405 57.895 0.00 0.00 41.99 3.16
1934 3982 0.822164 AAGGTCCGTCCGTCCAATAG 59.178 55.000 0.00 0.00 41.99 1.73
1935 3983 0.033796 AGGTCCGTCCGTCCAATAGA 60.034 55.000 0.00 0.00 41.99 1.98
1936 3984 1.038280 GGTCCGTCCGTCCAATAGAT 58.962 55.000 0.00 0.00 0.00 1.98
1937 3985 2.158564 AGGTCCGTCCGTCCAATAGATA 60.159 50.000 0.00 0.00 41.99 1.98
1938 3986 2.228343 GGTCCGTCCGTCCAATAGATAG 59.772 54.545 0.00 0.00 0.00 2.08
1939 3987 3.144506 GTCCGTCCGTCCAATAGATAGA 58.855 50.000 0.00 0.00 0.00 1.98
1940 3988 3.757493 GTCCGTCCGTCCAATAGATAGAT 59.243 47.826 0.00 0.00 0.00 1.98
1941 3989 4.940046 GTCCGTCCGTCCAATAGATAGATA 59.060 45.833 0.00 0.00 0.00 1.98
1942 3990 5.064962 GTCCGTCCGTCCAATAGATAGATAG 59.935 48.000 0.00 0.00 0.00 2.08
1972 4020 0.597568 TTGGCCGAATTGAAGCTGTG 59.402 50.000 0.00 0.00 0.00 3.66
1979 4027 2.947652 CGAATTGAAGCTGTGGATGGAT 59.052 45.455 0.00 0.00 0.00 3.41
1987 4035 1.893544 CTGTGGATGGATGGATGAGC 58.106 55.000 0.00 0.00 0.00 4.26
2017 4065 3.187022 TCGCGCATTCATTGATTGATAGG 59.813 43.478 8.75 0.83 33.34 2.57
2018 4066 3.240069 GCGCATTCATTGATTGATAGGC 58.760 45.455 0.30 5.92 33.34 3.93
2019 4067 3.057736 GCGCATTCATTGATTGATAGGCT 60.058 43.478 0.30 0.00 33.34 4.58
2020 4068 4.473199 CGCATTCATTGATTGATAGGCTG 58.527 43.478 11.71 0.00 33.34 4.85
2021 4069 4.235360 GCATTCATTGATTGATAGGCTGC 58.765 43.478 11.71 0.00 33.34 5.25
2023 4071 2.497138 TCATTGATTGATAGGCTGCCG 58.503 47.619 13.96 0.00 0.00 5.69
2024 4072 1.538512 CATTGATTGATAGGCTGCCGG 59.461 52.381 13.96 0.00 0.00 6.13
2041 4394 2.343101 CCGGCATTCGTTGAGTTCTAA 58.657 47.619 0.00 0.00 37.11 2.10
2042 4395 2.093783 CCGGCATTCGTTGAGTTCTAAC 59.906 50.000 0.00 0.00 37.11 2.34
2043 4396 2.993899 CGGCATTCGTTGAGTTCTAACT 59.006 45.455 0.00 0.00 43.16 2.24
2044 4397 4.171005 CGGCATTCGTTGAGTTCTAACTA 58.829 43.478 0.00 0.00 39.88 2.24
2045 4398 4.265556 CGGCATTCGTTGAGTTCTAACTAG 59.734 45.833 0.00 0.00 39.88 2.57
2046 4399 5.169295 GGCATTCGTTGAGTTCTAACTAGT 58.831 41.667 0.00 0.00 39.88 2.57
2073 4432 2.470821 CCGGTAACTAATCCTCTTGCG 58.529 52.381 0.00 0.00 0.00 4.85
2074 4433 2.470821 CGGTAACTAATCCTCTTGCGG 58.529 52.381 0.00 0.00 0.00 5.69
2078 4437 4.698780 GGTAACTAATCCTCTTGCGGTTTT 59.301 41.667 0.00 0.00 0.00 2.43
2079 4438 5.163784 GGTAACTAATCCTCTTGCGGTTTTC 60.164 44.000 0.00 0.00 0.00 2.29
2094 4483 4.202121 GCGGTTTTCCTTCTTCTTTTCCTT 60.202 41.667 0.00 0.00 37.95 3.36
2098 4487 7.327975 GGTTTTCCTTCTTCTTTTCCTTTTGA 58.672 34.615 0.00 0.00 36.94 2.69
2115 4504 2.865119 TGAGTGCAACATGATCACCT 57.135 45.000 0.00 0.00 41.43 4.00
2117 4506 3.599343 TGAGTGCAACATGATCACCTAC 58.401 45.455 0.00 0.00 41.43 3.18
2119 4508 2.017049 GTGCAACATGATCACCTACCC 58.983 52.381 0.00 0.00 36.32 3.69
2121 4510 2.092968 TGCAACATGATCACCTACCCTC 60.093 50.000 0.00 0.00 0.00 4.30
2123 4512 2.160721 ACATGATCACCTACCCTCGT 57.839 50.000 0.00 0.00 0.00 4.18
2124 4513 1.757118 ACATGATCACCTACCCTCGTG 59.243 52.381 0.00 0.00 0.00 4.35
2125 4514 0.753262 ATGATCACCTACCCTCGTGC 59.247 55.000 0.00 0.00 0.00 5.34
2126 4515 0.613572 TGATCACCTACCCTCGTGCA 60.614 55.000 0.00 0.00 0.00 4.57
2127 4516 0.753262 GATCACCTACCCTCGTGCAT 59.247 55.000 0.00 0.00 0.00 3.96
2129 4518 1.144057 CACCTACCCTCGTGCATCC 59.856 63.158 0.00 0.00 0.00 3.51
2130 4519 2.417516 CCTACCCTCGTGCATCCG 59.582 66.667 0.00 0.00 0.00 4.18
2131 4520 2.417516 CTACCCTCGTGCATCCGG 59.582 66.667 0.00 0.00 0.00 5.14
2132 4521 3.792053 CTACCCTCGTGCATCCGGC 62.792 68.421 0.00 0.00 45.13 6.13
2214 4834 0.246635 ACACGACATGGGAGTACTGC 59.753 55.000 5.70 5.70 0.00 4.40
2218 4838 0.246635 GACATGGGAGTACTGCACGT 59.753 55.000 16.81 9.29 0.00 4.49
2219 4839 1.475280 GACATGGGAGTACTGCACGTA 59.525 52.381 16.81 0.00 0.00 3.57
2226 4846 3.573569 GTACTGCACGTACACCACA 57.426 52.632 16.65 0.00 46.21 4.17
2227 4847 1.415374 GTACTGCACGTACACCACAG 58.585 55.000 16.65 0.00 46.21 3.66
2228 4848 0.315886 TACTGCACGTACACCACAGG 59.684 55.000 0.00 0.00 32.60 4.00
2232 4852 0.320073 GCACGTACACCACAGGCTTA 60.320 55.000 0.00 0.00 0.00 3.09
2233 4853 1.674817 GCACGTACACCACAGGCTTAT 60.675 52.381 0.00 0.00 0.00 1.73
2243 4989 5.104109 ACACCACAGGCTTATTACACCATAT 60.104 40.000 0.00 0.00 0.00 1.78
2266 5012 3.683802 AGGTCTCTGCTCAATCAAAAGG 58.316 45.455 0.00 0.00 0.00 3.11
2273 5019 6.765036 TCTCTGCTCAATCAAAAGGCTAATAG 59.235 38.462 0.00 0.00 0.00 1.73
2280 5026 6.606796 TCAATCAAAAGGCTAATAGCATGGAA 59.393 34.615 14.76 0.00 44.75 3.53
2330 5082 1.658686 CTCTTCCGGTCAGAGTCCCG 61.659 65.000 19.63 0.00 43.82 5.14
2344 5096 4.586235 CCCGGGGATGGATGGCAC 62.586 72.222 14.71 0.00 0.00 5.01
2396 5155 4.135153 CGGCAGGTCCTCTCACCG 62.135 72.222 5.12 5.12 41.90 4.94
2425 5184 4.050553 CAGACCGACATTTTTGTTGCAAT 58.949 39.130 0.59 0.00 0.00 3.56
2531 8137 7.531871 GCGTTGCTCATCATAATATAAACACAG 59.468 37.037 0.00 0.00 0.00 3.66
2554 8164 5.879223 AGCTATAGCATTGCATATTCCTCAC 59.121 40.000 26.07 0.00 45.16 3.51
2558 8168 2.603892 GCATTGCATATTCCTCACGCAG 60.604 50.000 3.15 0.00 33.48 5.18
2572 8205 1.202568 CGCAGTGCTCTGTTTCGTG 59.797 57.895 14.33 0.00 43.05 4.35
2573 8206 1.571460 GCAGTGCTCTGTTTCGTGG 59.429 57.895 16.59 0.00 43.05 4.94
2631 8388 2.416680 AGCAAGCCAGATCTTTCTCC 57.583 50.000 0.00 0.00 0.00 3.71
2743 8896 4.871993 AGCAAATCTGAATCTGCTAACG 57.128 40.909 9.05 0.00 43.17 3.18
2813 8968 0.597072 GTAAGATACTCCCGGCTCCG 59.403 60.000 0.00 0.48 39.44 4.63
2835 8996 0.962356 CACACCACCTGGCATCTTCC 60.962 60.000 0.00 0.00 39.32 3.46
2836 8997 1.379044 CACCACCTGGCATCTTCCC 60.379 63.158 0.00 0.00 39.32 3.97
2837 8998 2.124570 CCACCTGGCATCTTCCCG 60.125 66.667 0.00 0.00 0.00 5.14
2838 8999 2.124570 CACCTGGCATCTTCCCGG 60.125 66.667 0.00 0.00 0.00 5.73
2863 9028 4.943705 CCTTTCCAGCACAAAAGCTAGATA 59.056 41.667 0.00 0.00 44.54 1.98
2898 9064 4.157289 ACTCGCTCCGTCTCAAAATAAGTA 59.843 41.667 0.00 0.00 0.00 2.24
2905 9071 9.095065 GCTCCGTCTCAAAATAAGTATCTTTAA 57.905 33.333 0.00 0.00 0.00 1.52
2925 9091 9.280456 TCTTTAATTTACTACTCCCTTCATCCT 57.720 33.333 0.00 0.00 0.00 3.24
2932 9098 9.670442 TTTACTACTCCCTTCATCCTATAATGT 57.330 33.333 0.00 0.00 0.00 2.71
2935 9101 9.670442 ACTACTCCCTTCATCCTATAATGTAAA 57.330 33.333 0.00 0.00 0.00 2.01
2938 9104 9.628500 ACTCCCTTCATCCTATAATGTAAAAAC 57.372 33.333 0.00 0.00 0.00 2.43
2939 9105 8.671384 TCCCTTCATCCTATAATGTAAAAACG 57.329 34.615 0.00 0.00 0.00 3.60
2954 9120 7.647780 TGTAAAAACGTTTTTAACACTAGCG 57.352 32.000 35.39 0.00 42.33 4.26
2958 9124 6.588348 AAACGTTTTTAACACTAGCGTAGT 57.412 33.333 7.96 0.00 40.28 2.73
2986 9231 5.838531 AAACGTTCTTATGTTTTGGGACA 57.161 34.783 0.00 0.00 39.81 4.02
2991 9236 5.313712 GTTCTTATGTTTTGGGACAGAGGA 58.686 41.667 0.00 0.00 42.39 3.71
3026 9287 4.812626 ACACTAAACTCGGTACAAAGTTGG 59.187 41.667 11.53 10.25 34.78 3.77
3038 9299 6.128472 CGGTACAAAGTTGGGACACTTATTAC 60.128 42.308 0.00 0.00 39.29 1.89
3092 9353 0.931005 CGGATACTTTCTGCTTCGCC 59.069 55.000 0.00 0.00 0.00 5.54
3108 9369 1.228552 GCCTGAGGCCAAAGGTGAA 60.229 57.895 13.77 0.00 44.06 3.18
3160 9427 1.220206 CAAGGCTGAGGCGTGATCT 59.780 57.895 16.35 0.00 39.58 2.75
3174 9473 2.101415 CGTGATCTAATGGGAGCTGACA 59.899 50.000 0.00 0.00 0.00 3.58
3209 9508 0.605589 GGGTCTGAAACTTGACGGGG 60.606 60.000 0.00 0.00 34.31 5.73
3324 10621 4.095400 GAGGGGAGGGCAGAGGGA 62.095 72.222 0.00 0.00 0.00 4.20
3332 10649 4.021925 GGCAGAGGGACCGCTGTT 62.022 66.667 20.63 0.00 43.99 3.16
3337 10654 2.203788 AGGGACCGCTGTTGGAGA 60.204 61.111 0.00 0.00 0.00 3.71
3449 10779 7.568199 AACTGACATATAGGCAAATGGTTAC 57.432 36.000 0.00 0.00 32.28 2.50
3521 11604 4.134563 ACTGTCACCAACATAGTGTTTCC 58.865 43.478 0.00 0.00 38.77 3.13
3549 11633 1.086696 ATGTTTTGATCTGACGCGGG 58.913 50.000 12.47 0.00 0.00 6.13
3869 11996 4.351938 CCGGCCGTCGTTGTCTGA 62.352 66.667 26.12 0.00 37.11 3.27
3877 12004 1.071239 CGTCGTTGTCTGACAAAGCTG 60.071 52.381 25.17 17.66 40.15 4.24
4223 12393 0.511221 CGACGACAACAATGGTGACC 59.489 55.000 4.82 0.00 0.00 4.02
4465 12639 2.705127 ACAAGACATGGCCATGGTTTTT 59.295 40.909 41.25 27.65 42.91 1.94
4466 12640 3.244181 ACAAGACATGGCCATGGTTTTTC 60.244 43.478 41.25 30.51 42.91 2.29
4504 12681 6.267928 CAGAAGCTACCATTACTAGTACCCAT 59.732 42.308 0.91 0.00 0.00 4.00
4515 12692 2.409948 AGTACCCATCAGAAAGCAGC 57.590 50.000 0.00 0.00 0.00 5.25
4529 12706 0.537371 AGCAGCACTAACCAACACCC 60.537 55.000 0.00 0.00 0.00 4.61
4565 12742 2.687935 GTTCTGCTCCACCTGAAACAAA 59.312 45.455 0.00 0.00 0.00 2.83
4570 12747 1.338020 CTCCACCTGAAACAAACAGCC 59.662 52.381 0.00 0.00 34.47 4.85
4584 12764 4.892934 ACAAACAGCCTCCAAAATACAAGA 59.107 37.500 0.00 0.00 0.00 3.02
4585 12765 5.362430 ACAAACAGCCTCCAAAATACAAGAA 59.638 36.000 0.00 0.00 0.00 2.52
4586 12766 5.712152 AACAGCCTCCAAAATACAAGAAG 57.288 39.130 0.00 0.00 0.00 2.85
4618 12798 4.541973 ATTTGTTCCATTTGCTTCTCCC 57.458 40.909 0.00 0.00 0.00 4.30
4624 12804 1.180029 CATTTGCTTCTCCCCCAGTG 58.820 55.000 0.00 0.00 0.00 3.66
4643 12824 2.293399 GTGGCCTCGACAACTGAAATTT 59.707 45.455 3.32 0.00 0.00 1.82
4648 12829 4.142600 GCCTCGACAACTGAAATTTGCTAT 60.143 41.667 0.00 0.00 0.00 2.97
4659 12840 8.682936 ACTGAAATTTGCTATTCTATTCCGAT 57.317 30.769 0.00 0.00 0.00 4.18
4678 12859 9.923143 ATTCCGATTAAACATCGATATAAGTGA 57.077 29.630 0.00 0.00 43.59 3.41
4679 12860 9.752961 TTCCGATTAAACATCGATATAAGTGAA 57.247 29.630 0.00 1.32 43.59 3.18
4680 12861 9.406828 TCCGATTAAACATCGATATAAGTGAAG 57.593 33.333 0.00 0.00 43.59 3.02
4681 12862 8.162880 CCGATTAAACATCGATATAAGTGAAGC 58.837 37.037 0.00 0.00 43.59 3.86
4682 12863 8.162880 CGATTAAACATCGATATAAGTGAAGCC 58.837 37.037 0.00 0.00 43.59 4.35
4683 12864 5.907197 AAACATCGATATAAGTGAAGCCG 57.093 39.130 0.00 0.00 0.00 5.52
4684 12865 4.848562 ACATCGATATAAGTGAAGCCGA 57.151 40.909 0.00 0.00 0.00 5.54
4685 12866 5.392767 ACATCGATATAAGTGAAGCCGAT 57.607 39.130 0.00 0.00 35.95 4.18
4686 12867 5.784177 ACATCGATATAAGTGAAGCCGATT 58.216 37.500 0.00 0.00 33.72 3.34
4687 12868 6.920817 ACATCGATATAAGTGAAGCCGATTA 58.079 36.000 0.00 0.00 33.72 1.75
4688 12869 7.375834 ACATCGATATAAGTGAAGCCGATTAA 58.624 34.615 0.00 0.00 33.72 1.40
4689 12870 7.870954 ACATCGATATAAGTGAAGCCGATTAAA 59.129 33.333 0.00 0.00 33.72 1.52
4690 12871 7.869016 TCGATATAAGTGAAGCCGATTAAAG 57.131 36.000 0.00 0.00 0.00 1.85
4691 12872 7.654568 TCGATATAAGTGAAGCCGATTAAAGA 58.345 34.615 0.00 0.00 0.00 2.52
4692 12873 8.304596 TCGATATAAGTGAAGCCGATTAAAGAT 58.695 33.333 0.00 0.00 0.00 2.40
4693 12874 8.587950 CGATATAAGTGAAGCCGATTAAAGATC 58.412 37.037 0.00 0.00 0.00 2.75
4694 12875 6.771188 ATAAGTGAAGCCGATTAAAGATCG 57.229 37.500 1.66 1.66 40.86 3.69
4695 12876 4.386867 AGTGAAGCCGATTAAAGATCGA 57.613 40.909 9.74 0.00 43.59 3.59
4696 12877 4.950050 AGTGAAGCCGATTAAAGATCGAT 58.050 39.130 9.74 0.00 43.59 3.59
4697 12878 6.085555 AGTGAAGCCGATTAAAGATCGATA 57.914 37.500 9.74 0.00 43.59 2.92
4773 12979 1.589716 AAAGGAAGCAGATGCACCGC 61.590 55.000 7.68 0.00 45.16 5.68
4816 13023 1.823470 GCATTGCGCCTATGGACCA 60.823 57.895 17.88 0.00 32.94 4.02
4818 13025 0.664761 CATTGCGCCTATGGACCAAG 59.335 55.000 4.18 0.00 0.00 3.61
4821 13028 0.107703 TGCGCCTATGGACCAAGAAG 60.108 55.000 4.18 0.00 0.00 2.85
4822 13029 0.107654 GCGCCTATGGACCAAGAAGT 60.108 55.000 0.00 0.00 0.00 3.01
4824 13031 2.280628 CGCCTATGGACCAAGAAGTTC 58.719 52.381 0.00 0.00 0.00 3.01
4826 13033 2.239907 GCCTATGGACCAAGAAGTTCCT 59.760 50.000 0.00 0.00 0.00 3.36
4827 13034 3.682999 GCCTATGGACCAAGAAGTTCCTC 60.683 52.174 0.00 0.00 0.00 3.71
4828 13035 2.770164 ATGGACCAAGAAGTTCCTCG 57.230 50.000 0.00 0.00 0.00 4.63
4870 13081 1.262417 TACAGAACCATCAGGCGACA 58.738 50.000 0.00 0.00 39.06 4.35
4918 13129 1.917273 GCGATACAGCGAACAGGTTA 58.083 50.000 0.00 0.00 0.00 2.85
4995 13206 7.524717 ACTACAAGCAGAATAAAACAACCAT 57.475 32.000 0.00 0.00 0.00 3.55
4996 13207 7.593825 ACTACAAGCAGAATAAAACAACCATC 58.406 34.615 0.00 0.00 0.00 3.51
5079 13291 1.309499 TAAATCGCCAGCAAACCGGG 61.309 55.000 6.32 0.00 0.00 5.73
5207 13419 3.695830 TTTATCGACCTTGGCTTCTGT 57.304 42.857 0.00 0.00 0.00 3.41
5316 13528 0.594796 GCTGGACTTTGCGGTTTGTG 60.595 55.000 0.00 0.00 0.00 3.33
5385 13597 1.327303 CCTGCAAAAGTAGCCACCAA 58.673 50.000 0.00 0.00 0.00 3.67
5422 13636 2.721231 GCGCAAAGCTGACACCAA 59.279 55.556 0.30 0.00 44.04 3.67
5437 13651 6.567701 GCTGACACCAAGTTGAAATCGAATAA 60.568 38.462 3.87 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.686052 GATCCCTCTGACACAGCCTAG 59.314 57.143 0.00 0.00 0.00 3.02
110 119 7.335422 CCACTCTGAGCAACATAAAAATACTCT 59.665 37.037 4.19 0.00 0.00 3.24
123 132 1.024271 TTTGTGCCACTCTGAGCAAC 58.976 50.000 4.19 0.00 41.48 4.17
126 135 2.035066 ACAAATTTGTGCCACTCTGAGC 59.965 45.455 22.71 0.00 40.49 4.26
127 136 3.996150 ACAAATTTGTGCCACTCTGAG 57.004 42.857 22.71 2.45 40.49 3.35
129 138 3.125316 CCAACAAATTTGTGCCACTCTG 58.875 45.455 23.93 15.56 41.31 3.35
130 139 2.102925 CCCAACAAATTTGTGCCACTCT 59.897 45.455 23.93 4.12 41.31 3.24
135 163 1.691434 TCTCCCCAACAAATTTGTGCC 59.309 47.619 23.93 0.00 41.31 5.01
145 275 2.303022 CTCTAGCAGTTTCTCCCCAACA 59.697 50.000 0.00 0.00 0.00 3.33
247 988 3.886505 ACGCAGTCCTCCAAATTTGTTTA 59.113 39.130 16.73 1.71 29.74 2.01
255 996 0.181587 TTCCAACGCAGTCCTCCAAA 59.818 50.000 0.00 0.00 45.00 3.28
258 999 1.671379 GGTTCCAACGCAGTCCTCC 60.671 63.158 0.00 0.00 45.00 4.30
259 1000 1.070786 TGGTTCCAACGCAGTCCTC 59.929 57.895 0.00 0.00 45.00 3.71
265 1006 0.878416 GCTATTGTGGTTCCAACGCA 59.122 50.000 0.00 0.00 0.00 5.24
267 1008 1.468520 CCAGCTATTGTGGTTCCAACG 59.531 52.381 0.00 0.00 0.00 4.10
268 1009 2.228822 CACCAGCTATTGTGGTTCCAAC 59.771 50.000 0.00 0.00 46.73 3.77
271 1012 1.004277 TCCACCAGCTATTGTGGTTCC 59.996 52.381 21.87 0.00 46.73 3.62
284 1025 1.134580 CATACAGCTGACCTCCACCAG 60.135 57.143 23.35 0.00 0.00 4.00
285 1026 0.904649 CATACAGCTGACCTCCACCA 59.095 55.000 23.35 0.00 0.00 4.17
286 1027 0.905357 ACATACAGCTGACCTCCACC 59.095 55.000 23.35 0.00 0.00 4.61
287 1028 2.744202 CAAACATACAGCTGACCTCCAC 59.256 50.000 23.35 0.00 0.00 4.02
288 1029 2.371841 ACAAACATACAGCTGACCTCCA 59.628 45.455 23.35 0.00 0.00 3.86
289 1030 2.744202 CACAAACATACAGCTGACCTCC 59.256 50.000 23.35 0.00 0.00 4.30
290 1031 3.403038 ACACAAACATACAGCTGACCTC 58.597 45.455 23.35 0.00 0.00 3.85
291 1032 3.492102 ACACAAACATACAGCTGACCT 57.508 42.857 23.35 0.00 0.00 3.85
292 1033 3.122948 CGTACACAAACATACAGCTGACC 59.877 47.826 23.35 0.00 0.00 4.02
293 1034 3.739300 ACGTACACAAACATACAGCTGAC 59.261 43.478 23.35 1.91 0.00 3.51
294 1035 3.738791 CACGTACACAAACATACAGCTGA 59.261 43.478 23.35 4.31 0.00 4.26
296 1037 2.478894 GCACGTACACAAACATACAGCT 59.521 45.455 0.00 0.00 0.00 4.24
298 1039 4.326278 CCTAGCACGTACACAAACATACAG 59.674 45.833 0.00 0.00 0.00 2.74
299 1040 4.239304 CCTAGCACGTACACAAACATACA 58.761 43.478 0.00 0.00 0.00 2.29
300 1041 3.615496 CCCTAGCACGTACACAAACATAC 59.385 47.826 0.00 0.00 0.00 2.39
301 1042 3.852286 CCCTAGCACGTACACAAACATA 58.148 45.455 0.00 0.00 0.00 2.29
302 1043 2.695359 CCCTAGCACGTACACAAACAT 58.305 47.619 0.00 0.00 0.00 2.71
306 1634 1.475280 CTAGCCCTAGCACGTACACAA 59.525 52.381 0.00 0.00 43.56 3.33
321 1649 2.197875 TAGGACGGGGAGCTAGCC 59.802 66.667 12.13 2.59 0.00 3.93
322 1650 2.201708 GGTAGGACGGGGAGCTAGC 61.202 68.421 6.62 6.62 0.00 3.42
324 1652 2.194056 CGGTAGGACGGGGAGCTA 59.806 66.667 0.00 0.00 0.00 3.32
325 1653 4.057943 ACGGTAGGACGGGGAGCT 62.058 66.667 0.00 0.00 38.39 4.09
326 1654 3.834799 CACGGTAGGACGGGGAGC 61.835 72.222 0.00 0.00 38.39 4.70
330 1658 4.143333 CAGCCACGGTAGGACGGG 62.143 72.222 1.50 0.00 38.39 5.28
331 1659 3.066190 TCAGCCACGGTAGGACGG 61.066 66.667 1.50 0.00 38.39 4.79
508 1851 4.569180 ATAATGGCCGCCGCTGCT 62.569 61.111 4.58 0.00 34.43 4.24
629 2392 6.531439 ACGAGACGCTGTTTTTAATACATTC 58.469 36.000 0.00 0.00 0.00 2.67
632 2395 7.585286 ATTACGAGACGCTGTTTTTAATACA 57.415 32.000 0.00 0.00 0.00 2.29
633 2396 7.780260 CGTATTACGAGACGCTGTTTTTAATAC 59.220 37.037 10.70 0.00 46.05 1.89
651 2414 6.034790 TGTGCTGGTACAATTTACGTATTACG 59.965 38.462 14.41 14.41 43.68 3.18
746 2547 2.664436 CCCGTTCTCGAAACCGCAC 61.664 63.158 0.00 0.00 39.71 5.34
748 2549 1.623973 CTTCCCGTTCTCGAAACCGC 61.624 60.000 0.00 0.00 39.71 5.68
761 2562 1.515521 GCCGCCATTATTCCTTCCCG 61.516 60.000 0.00 0.00 0.00 5.14
827 2632 2.632028 CAGCTGTAGGCCATACATCTCT 59.368 50.000 5.01 5.95 43.44 3.10
848 2663 3.761445 TATAGACGGCGTGCGGTGC 62.761 63.158 21.19 0.44 0.00 5.01
849 2664 0.802994 TTTATAGACGGCGTGCGGTG 60.803 55.000 21.19 0.00 0.00 4.94
850 2665 0.103572 ATTTATAGACGGCGTGCGGT 59.896 50.000 21.19 4.63 0.00 5.68
851 2666 1.717645 GTATTTATAGACGGCGTGCGG 59.282 52.381 21.19 0.00 0.00 5.69
852 2667 1.717645 GGTATTTATAGACGGCGTGCG 59.282 52.381 21.19 0.00 0.00 5.34
1077 2973 1.664873 GTCTCTTTTATGGCCCGGAC 58.335 55.000 0.73 0.00 0.00 4.79
1081 2977 6.323739 TCAATAAATGGTCTCTTTTATGGCCC 59.676 38.462 0.00 0.00 35.07 5.80
1106 3008 1.479709 AGCGTGGTTAGCTGAGAGAT 58.520 50.000 0.00 0.00 44.22 2.75
1153 3057 0.809241 GAGTGGATGGCAGAGAAGCG 60.809 60.000 0.00 0.00 34.64 4.68
1193 3109 1.474143 GCCAGGCCTAGAGTTCATCAC 60.474 57.143 3.98 0.00 0.00 3.06
1203 3121 4.880537 CAGCGTCGCCAGGCCTAG 62.881 72.222 14.86 0.00 33.60 3.02
1313 3234 1.623311 TGATGATGACCACCACGACTT 59.377 47.619 0.00 0.00 0.00 3.01
1323 3244 0.107703 TGCTTCCGGTGATGATGACC 60.108 55.000 0.00 0.00 0.00 4.02
1348 3269 3.465403 CCCACAGCTCCTCCTCCG 61.465 72.222 0.00 0.00 0.00 4.63
1425 3346 6.144175 TGCTTAGCGCGTTATTTAAAACTTT 58.856 32.000 8.43 0.00 43.27 2.66
1426 3347 5.691815 TGCTTAGCGCGTTATTTAAAACTT 58.308 33.333 8.43 0.00 43.27 2.66
1427 3348 5.285798 TGCTTAGCGCGTTATTTAAAACT 57.714 34.783 8.43 0.00 43.27 2.66
1428 3349 5.963586 AGATGCTTAGCGCGTTATTTAAAAC 59.036 36.000 8.43 0.00 43.27 2.43
1429 3350 6.114221 AGATGCTTAGCGCGTTATTTAAAA 57.886 33.333 8.43 0.00 43.27 1.52
1430 3351 5.728351 AGATGCTTAGCGCGTTATTTAAA 57.272 34.783 8.43 0.00 43.27 1.52
1431 3352 5.728351 AAGATGCTTAGCGCGTTATTTAA 57.272 34.783 8.43 0.00 43.27 1.52
1432 3353 5.107607 GCTAAGATGCTTAGCGCGTTATTTA 60.108 40.000 19.61 0.00 43.27 1.40
1433 3354 4.318831 GCTAAGATGCTTAGCGCGTTATTT 60.319 41.667 19.61 0.00 43.27 1.40
1434 3355 3.184581 GCTAAGATGCTTAGCGCGTTATT 59.815 43.478 19.61 0.00 43.27 1.40
1435 3356 2.731976 GCTAAGATGCTTAGCGCGTTAT 59.268 45.455 19.61 0.00 43.27 1.89
1436 3357 2.124903 GCTAAGATGCTTAGCGCGTTA 58.875 47.619 19.61 2.16 43.27 3.18
1437 3358 0.931005 GCTAAGATGCTTAGCGCGTT 59.069 50.000 19.61 3.54 43.27 4.84
1438 3359 2.594541 GCTAAGATGCTTAGCGCGT 58.405 52.632 19.61 0.00 43.27 6.01
1442 3363 1.560860 CCGGCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
1443 3364 0.032130 TCCGGCGCTAAGATGCTTAG 59.968 55.000 7.64 9.30 0.00 2.18
1444 3365 0.249322 GTCCGGCGCTAAGATGCTTA 60.249 55.000 7.64 0.00 0.00 3.09
1445 3366 1.521681 GTCCGGCGCTAAGATGCTT 60.522 57.895 7.64 0.00 0.00 3.91
1446 3367 2.107141 GTCCGGCGCTAAGATGCT 59.893 61.111 7.64 0.00 0.00 3.79
1447 3368 2.967615 GGTCCGGCGCTAAGATGC 60.968 66.667 7.64 0.00 0.00 3.91
1448 3369 1.300233 GAGGTCCGGCGCTAAGATG 60.300 63.158 7.64 0.00 0.00 2.90
1449 3370 1.043673 AAGAGGTCCGGCGCTAAGAT 61.044 55.000 7.64 0.00 0.00 2.40
1450 3371 1.255667 AAAGAGGTCCGGCGCTAAGA 61.256 55.000 7.64 0.00 0.00 2.10
1451 3372 0.806492 GAAAGAGGTCCGGCGCTAAG 60.806 60.000 7.64 0.00 0.00 2.18
1452 3373 1.217244 GAAAGAGGTCCGGCGCTAA 59.783 57.895 7.64 0.00 0.00 3.09
1453 3374 1.537814 TTGAAAGAGGTCCGGCGCTA 61.538 55.000 7.64 0.00 0.00 4.26
1454 3375 2.391724 TTTGAAAGAGGTCCGGCGCT 62.392 55.000 7.64 0.00 0.00 5.92
1455 3376 1.305930 ATTTGAAAGAGGTCCGGCGC 61.306 55.000 0.00 0.00 0.00 6.53
1456 3377 0.447801 CATTTGAAAGAGGTCCGGCG 59.552 55.000 0.00 0.00 0.00 6.46
1457 3378 0.171231 GCATTTGAAAGAGGTCCGGC 59.829 55.000 0.00 0.00 0.00 6.13
1458 3379 1.826385 AGCATTTGAAAGAGGTCCGG 58.174 50.000 0.00 0.00 0.00 5.14
1459 3380 4.212214 GCTATAGCATTTGAAAGAGGTCCG 59.788 45.833 20.01 0.00 41.59 4.79
1460 3381 4.212214 CGCTATAGCATTTGAAAGAGGTCC 59.788 45.833 23.99 0.00 42.21 4.46
1461 3382 4.811557 ACGCTATAGCATTTGAAAGAGGTC 59.188 41.667 23.99 0.00 42.21 3.85
1462 3383 4.572389 CACGCTATAGCATTTGAAAGAGGT 59.428 41.667 23.99 6.60 42.21 3.85
1463 3384 4.553547 GCACGCTATAGCATTTGAAAGAGG 60.554 45.833 23.99 5.98 42.21 3.69
1464 3385 4.272018 AGCACGCTATAGCATTTGAAAGAG 59.728 41.667 23.99 6.48 42.21 2.85
1465 3386 4.191544 AGCACGCTATAGCATTTGAAAGA 58.808 39.130 23.99 0.00 42.21 2.52
1466 3387 4.542662 AGCACGCTATAGCATTTGAAAG 57.457 40.909 23.99 7.87 42.21 2.62
1467 3388 7.351414 CTATAGCACGCTATAGCATTTGAAA 57.649 36.000 25.42 9.51 46.26 2.69
1468 3389 6.951256 CTATAGCACGCTATAGCATTTGAA 57.049 37.500 25.42 9.81 46.26 2.69
1477 3398 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
1478 3399 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
1479 3400 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
1480 3401 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
1481 3402 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
1489 3410 1.306642 GCTCCGCTATAGCTCCGCTA 61.307 60.000 21.98 0.00 45.55 4.26
1490 3411 2.631580 GCTCCGCTATAGCTCCGCT 61.632 63.158 21.98 0.00 43.41 5.52
1491 3412 2.126267 GCTCCGCTATAGCTCCGC 60.126 66.667 21.98 16.10 39.32 5.54
1500 3421 2.868196 CGCGCTATAGCTCCGCTA 59.132 61.111 21.98 0.00 45.55 4.26
1503 3424 0.179161 AATAGCGCGCTATAGCTCCG 60.179 55.000 43.81 22.32 43.44 4.63
1504 3425 1.997669 AAATAGCGCGCTATAGCTCC 58.002 50.000 43.81 10.26 43.44 4.70
1505 3426 5.511088 TTTTAAATAGCGCGCTATAGCTC 57.489 39.130 43.81 13.77 43.44 4.09
1506 3427 5.408604 ACATTTTAAATAGCGCGCTATAGCT 59.591 36.000 43.81 33.17 46.53 3.32
1507 3428 5.618561 ACATTTTAAATAGCGCGCTATAGC 58.381 37.500 43.81 15.09 38.20 2.97
1508 3429 7.586300 ACAAACATTTTAAATAGCGCGCTATAG 59.414 33.333 43.81 29.40 38.20 1.31
1509 3430 7.411274 ACAAACATTTTAAATAGCGCGCTATA 58.589 30.769 43.81 31.73 38.20 1.31
1510 3431 6.262601 ACAAACATTTTAAATAGCGCGCTAT 58.737 32.000 40.32 40.32 40.63 2.97
1511 3432 5.632959 ACAAACATTTTAAATAGCGCGCTA 58.367 33.333 39.72 39.72 0.00 4.26
1512 3433 4.481463 ACAAACATTTTAAATAGCGCGCT 58.519 34.783 38.01 38.01 0.00 5.92
1513 3434 4.816277 ACAAACATTTTAAATAGCGCGC 57.184 36.364 26.66 26.66 0.00 6.86
1514 3435 6.369326 TGAACAAACATTTTAAATAGCGCG 57.631 33.333 0.00 0.00 0.00 6.86
1515 3436 9.039500 CAAATGAACAAACATTTTAAATAGCGC 57.961 29.630 0.00 0.00 44.63 5.92
1523 3444 8.669243 GGTCCAAACAAATGAACAAACATTTTA 58.331 29.630 0.00 0.00 44.63 1.52
1524 3445 7.534282 GGTCCAAACAAATGAACAAACATTTT 58.466 30.769 0.00 0.00 44.63 1.82
1525 3446 6.183360 CGGTCCAAACAAATGAACAAACATTT 60.183 34.615 0.00 0.00 46.85 2.32
1526 3447 5.293079 CGGTCCAAACAAATGAACAAACATT 59.707 36.000 0.00 0.00 41.43 2.71
1527 3448 4.808364 CGGTCCAAACAAATGAACAAACAT 59.192 37.500 0.00 0.00 0.00 2.71
1528 3449 4.082190 TCGGTCCAAACAAATGAACAAACA 60.082 37.500 0.00 0.00 0.00 2.83
1529 3450 4.425520 TCGGTCCAAACAAATGAACAAAC 58.574 39.130 0.00 0.00 0.00 2.93
1530 3451 4.720649 TCGGTCCAAACAAATGAACAAA 57.279 36.364 0.00 0.00 0.00 2.83
1531 3452 4.158764 ACTTCGGTCCAAACAAATGAACAA 59.841 37.500 0.00 0.00 0.00 2.83
1532 3453 3.697045 ACTTCGGTCCAAACAAATGAACA 59.303 39.130 0.00 0.00 0.00 3.18
1533 3454 4.036380 AGACTTCGGTCCAAACAAATGAAC 59.964 41.667 0.00 0.00 45.49 3.18
1534 3455 4.204012 AGACTTCGGTCCAAACAAATGAA 58.796 39.130 0.00 0.00 45.49 2.57
1535 3456 3.813166 GAGACTTCGGTCCAAACAAATGA 59.187 43.478 0.00 0.00 45.49 2.57
1536 3457 3.815401 AGAGACTTCGGTCCAAACAAATG 59.185 43.478 0.00 0.00 45.49 2.32
1537 3458 4.086706 AGAGACTTCGGTCCAAACAAAT 57.913 40.909 0.00 0.00 45.49 2.32
1538 3459 3.553828 AGAGACTTCGGTCCAAACAAA 57.446 42.857 0.00 0.00 45.49 2.83
1539 3460 3.553828 AAGAGACTTCGGTCCAAACAA 57.446 42.857 0.00 0.00 45.49 2.83
1540 3461 3.554337 GCTAAGAGACTTCGGTCCAAACA 60.554 47.826 0.00 0.00 45.49 2.83
1541 3462 2.994578 GCTAAGAGACTTCGGTCCAAAC 59.005 50.000 0.00 0.00 45.49 2.93
1542 3463 2.352421 CGCTAAGAGACTTCGGTCCAAA 60.352 50.000 0.00 0.00 45.49 3.28
1543 3464 1.201647 CGCTAAGAGACTTCGGTCCAA 59.798 52.381 0.00 0.00 45.49 3.53
1544 3465 0.809385 CGCTAAGAGACTTCGGTCCA 59.191 55.000 0.00 0.00 45.49 4.02
1545 3466 0.525882 GCGCTAAGAGACTTCGGTCC 60.526 60.000 0.00 0.00 45.49 4.46
1546 3467 0.170561 TGCGCTAAGAGACTTCGGTC 59.829 55.000 9.73 0.00 44.75 4.79
1547 3468 0.601558 TTGCGCTAAGAGACTTCGGT 59.398 50.000 9.73 0.00 0.00 4.69
1548 3469 1.135373 TCTTGCGCTAAGAGACTTCGG 60.135 52.381 9.73 0.00 40.43 4.30
1549 3470 1.914700 GTCTTGCGCTAAGAGACTTCG 59.085 52.381 18.44 0.00 45.71 3.79
1550 3471 2.094442 AGGTCTTGCGCTAAGAGACTTC 60.094 50.000 22.91 13.46 45.71 3.01
1551 3472 1.896465 AGGTCTTGCGCTAAGAGACTT 59.104 47.619 22.91 17.23 45.71 3.01
1552 3473 1.551452 AGGTCTTGCGCTAAGAGACT 58.449 50.000 22.91 18.83 45.71 3.24
1553 3474 2.371910 AAGGTCTTGCGCTAAGAGAC 57.628 50.000 18.44 18.59 45.71 3.36
1554 3475 3.067106 CAAAAGGTCTTGCGCTAAGAGA 58.933 45.455 18.44 9.99 45.71 3.10
1555 3476 2.808543 ACAAAAGGTCTTGCGCTAAGAG 59.191 45.455 18.44 10.73 45.71 2.85
1556 3477 2.846193 ACAAAAGGTCTTGCGCTAAGA 58.154 42.857 9.73 13.31 43.01 2.10
1557 3478 4.742438 TTACAAAAGGTCTTGCGCTAAG 57.258 40.909 9.73 11.02 37.76 2.18
1558 3479 4.553156 CGTTTACAAAAGGTCTTGCGCTAA 60.553 41.667 9.73 0.00 0.00 3.09
1559 3480 3.059461 CGTTTACAAAAGGTCTTGCGCTA 60.059 43.478 9.73 0.00 0.00 4.26
1560 3481 2.286772 CGTTTACAAAAGGTCTTGCGCT 60.287 45.455 9.73 0.00 0.00 5.92
1561 3482 2.041244 CGTTTACAAAAGGTCTTGCGC 58.959 47.619 0.00 0.00 0.00 6.09
1562 3483 2.041244 GCGTTTACAAAAGGTCTTGCG 58.959 47.619 0.00 0.00 0.00 4.85
1563 3484 3.349488 AGCGTTTACAAAAGGTCTTGC 57.651 42.857 0.00 0.00 0.00 4.01
1564 3485 6.248631 GCTATAGCGTTTACAAAAGGTCTTG 58.751 40.000 9.40 0.00 31.10 3.02
1565 3486 6.418585 GCTATAGCGTTTACAAAAGGTCTT 57.581 37.500 9.40 0.00 31.10 3.01
1583 3504 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
1584 3505 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
1585 3506 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
1586 3507 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
1587 3508 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
1595 3516 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
1596 3517 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
1597 3518 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
1598 3519 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
1599 3520 2.233922 TCAAATAGCCCGCTATAGCTCC 59.766 50.000 21.98 10.06 40.56 4.70
1600 3521 3.594603 TCAAATAGCCCGCTATAGCTC 57.405 47.619 21.98 11.04 40.56 4.09
1601 3522 4.065789 GTTTCAAATAGCCCGCTATAGCT 58.934 43.478 21.98 6.31 43.20 3.32
1602 3523 3.813166 TGTTTCAAATAGCCCGCTATAGC 59.187 43.478 15.09 15.09 38.20 2.97
1603 3524 5.050091 CACTGTTTCAAATAGCCCGCTATAG 60.050 44.000 9.56 6.26 38.20 1.31
1604 3525 4.814234 CACTGTTTCAAATAGCCCGCTATA 59.186 41.667 9.56 0.00 38.20 1.31
1605 3526 3.627577 CACTGTTTCAAATAGCCCGCTAT 59.372 43.478 3.31 3.31 40.63 2.97
1606 3527 3.006940 CACTGTTTCAAATAGCCCGCTA 58.993 45.455 0.00 0.00 0.00 4.26
1607 3528 1.812571 CACTGTTTCAAATAGCCCGCT 59.187 47.619 0.00 0.00 0.00 5.52
1608 3529 1.135402 CCACTGTTTCAAATAGCCCGC 60.135 52.381 0.00 0.00 0.00 6.13
1609 3530 2.420022 CTCCACTGTTTCAAATAGCCCG 59.580 50.000 0.00 0.00 0.00 6.13
1610 3531 2.164422 GCTCCACTGTTTCAAATAGCCC 59.836 50.000 0.00 0.00 0.00 5.19
1611 3532 3.084786 AGCTCCACTGTTTCAAATAGCC 58.915 45.455 0.00 0.00 0.00 3.93
1612 3533 4.088823 CAGCTCCACTGTTTCAAATAGC 57.911 45.455 0.00 0.00 41.86 2.97
1627 3548 4.767255 CAGGCGTGGGTCAGCTCC 62.767 72.222 0.00 0.00 0.00 4.70
1628 3549 4.767255 CCAGGCGTGGGTCAGCTC 62.767 72.222 17.92 0.00 40.67 4.09
1767 3697 3.057456 AGTCGTGATTAACAGCGAAGACT 60.057 43.478 0.00 0.00 35.32 3.24
1769 3699 3.570926 AGTCGTGATTAACAGCGAAGA 57.429 42.857 0.00 0.00 35.32 2.87
1771 3701 4.430137 ACTAGTCGTGATTAACAGCGAA 57.570 40.909 0.00 0.00 35.32 4.70
1775 3705 4.729086 CGTGCTACTAGTCGTGATTAACAG 59.271 45.833 0.00 0.00 0.00 3.16
1776 3706 4.437794 CCGTGCTACTAGTCGTGATTAACA 60.438 45.833 0.00 0.00 0.00 2.41
1777 3707 4.033684 CCGTGCTACTAGTCGTGATTAAC 58.966 47.826 0.00 0.00 0.00 2.01
1778 3708 3.488047 GCCGTGCTACTAGTCGTGATTAA 60.488 47.826 0.00 0.00 0.00 1.40
1779 3709 2.032550 GCCGTGCTACTAGTCGTGATTA 59.967 50.000 0.00 0.00 0.00 1.75
1780 3710 1.202268 GCCGTGCTACTAGTCGTGATT 60.202 52.381 0.00 0.00 0.00 2.57
1786 3732 2.278661 GCCGCCGTGCTACTAGTC 60.279 66.667 0.00 0.00 0.00 2.59
1814 3793 4.856607 CGTCTTCTCCGGCGAGCC 62.857 72.222 9.30 3.59 35.94 4.70
1852 3888 2.469516 CGCCCGTGCATTTACTCCC 61.470 63.158 0.00 0.00 37.32 4.30
1873 3914 2.590575 ACCCAACGACCAACTGCG 60.591 61.111 0.00 0.00 0.00 5.18
1934 3982 7.934665 TCGGCCAACTATCTATCTCTATCTATC 59.065 40.741 2.24 0.00 0.00 2.08
1935 3983 7.807198 TCGGCCAACTATCTATCTCTATCTAT 58.193 38.462 2.24 0.00 0.00 1.98
1936 3984 7.196637 TCGGCCAACTATCTATCTCTATCTA 57.803 40.000 2.24 0.00 0.00 1.98
1937 3985 6.068461 TCGGCCAACTATCTATCTCTATCT 57.932 41.667 2.24 0.00 0.00 1.98
1938 3986 6.761099 TTCGGCCAACTATCTATCTCTATC 57.239 41.667 2.24 0.00 0.00 2.08
1939 3987 7.397476 TCAATTCGGCCAACTATCTATCTCTAT 59.603 37.037 2.24 0.00 0.00 1.98
1940 3988 6.719829 TCAATTCGGCCAACTATCTATCTCTA 59.280 38.462 2.24 0.00 0.00 2.43
1941 3989 5.540337 TCAATTCGGCCAACTATCTATCTCT 59.460 40.000 2.24 0.00 0.00 3.10
1942 3990 5.784177 TCAATTCGGCCAACTATCTATCTC 58.216 41.667 2.24 0.00 0.00 2.75
1972 4020 2.486982 CGAATTGCTCATCCATCCATCC 59.513 50.000 0.00 0.00 0.00 3.51
2017 4065 3.386867 CTCAACGAATGCCGGCAGC 62.387 63.158 35.36 26.43 43.93 5.25
2018 4066 1.577328 AACTCAACGAATGCCGGCAG 61.577 55.000 35.36 23.49 43.93 4.85
2019 4067 1.573829 GAACTCAACGAATGCCGGCA 61.574 55.000 34.80 34.80 43.93 5.69
2020 4068 1.134694 GAACTCAACGAATGCCGGC 59.865 57.895 22.73 22.73 43.93 6.13
2021 4069 2.004583 TAGAACTCAACGAATGCCGG 57.995 50.000 0.00 0.00 43.93 6.13
2023 4071 5.169295 ACTAGTTAGAACTCAACGAATGCC 58.831 41.667 0.00 0.00 40.37 4.40
2024 4072 6.805271 TGTACTAGTTAGAACTCAACGAATGC 59.195 38.462 0.00 0.00 40.37 3.56
2041 4394 2.743553 AGTTACCGGCCATGTACTAGT 58.256 47.619 0.00 0.00 0.00 2.57
2042 4395 4.924305 TTAGTTACCGGCCATGTACTAG 57.076 45.455 0.00 0.00 0.00 2.57
2043 4396 4.281688 GGATTAGTTACCGGCCATGTACTA 59.718 45.833 0.00 1.95 0.00 1.82
2044 4397 3.070590 GGATTAGTTACCGGCCATGTACT 59.929 47.826 0.00 3.02 0.00 2.73
2045 4398 3.070590 AGGATTAGTTACCGGCCATGTAC 59.929 47.826 0.00 0.00 0.00 2.90
2046 4399 3.311091 AGGATTAGTTACCGGCCATGTA 58.689 45.455 0.00 0.00 0.00 2.29
2073 4432 7.327975 TCAAAAGGAAAAGAAGAAGGAAAACC 58.672 34.615 0.00 0.00 0.00 3.27
2074 4433 8.035394 ACTCAAAAGGAAAAGAAGAAGGAAAAC 58.965 33.333 0.00 0.00 0.00 2.43
2078 4437 5.067805 GCACTCAAAAGGAAAAGAAGAAGGA 59.932 40.000 0.00 0.00 0.00 3.36
2079 4438 5.163519 TGCACTCAAAAGGAAAAGAAGAAGG 60.164 40.000 0.00 0.00 0.00 3.46
2094 4483 3.489355 AGGTGATCATGTTGCACTCAAA 58.511 40.909 0.00 0.00 33.37 2.69
2098 4487 2.356125 GGGTAGGTGATCATGTTGCACT 60.356 50.000 0.00 2.57 33.25 4.40
2115 4504 3.845259 GCCGGATGCACGAGGGTA 61.845 66.667 5.05 0.00 40.77 3.69
2136 4525 1.081892 GCATGCATCTAGCCGTATGG 58.918 55.000 14.21 0.00 44.83 2.74
2137 4526 0.717784 CGCATGCATCTAGCCGTATG 59.282 55.000 19.57 5.36 44.83 2.39
2138 4527 0.318441 ACGCATGCATCTAGCCGTAT 59.682 50.000 19.57 0.00 44.83 3.06
2139 4528 0.104120 AACGCATGCATCTAGCCGTA 59.896 50.000 19.57 0.00 44.83 4.02
2140 4529 1.153369 AACGCATGCATCTAGCCGT 60.153 52.632 19.57 1.22 44.83 5.68
2181 4570 2.034179 TGTCGTGTCAAGAGTAGTGGTG 59.966 50.000 0.00 0.00 0.00 4.17
2182 4571 2.304092 TGTCGTGTCAAGAGTAGTGGT 58.696 47.619 0.00 0.00 0.00 4.16
2190 4768 1.338107 ACTCCCATGTCGTGTCAAGA 58.662 50.000 0.00 0.00 0.00 3.02
2214 4834 2.380084 ATAAGCCTGTGGTGTACGTG 57.620 50.000 0.00 0.00 0.00 4.49
2218 4838 3.583526 TGGTGTAATAAGCCTGTGGTGTA 59.416 43.478 0.00 0.00 0.00 2.90
2219 4839 2.373836 TGGTGTAATAAGCCTGTGGTGT 59.626 45.455 0.00 0.00 0.00 4.16
2220 4840 3.066291 TGGTGTAATAAGCCTGTGGTG 57.934 47.619 0.00 0.00 0.00 4.17
2221 4841 5.131977 TCATATGGTGTAATAAGCCTGTGGT 59.868 40.000 2.13 0.00 0.00 4.16
2222 4842 5.620206 TCATATGGTGTAATAAGCCTGTGG 58.380 41.667 2.13 0.00 0.00 4.17
2223 4843 5.702670 CCTCATATGGTGTAATAAGCCTGTG 59.297 44.000 2.13 0.00 0.00 3.66
2225 4845 5.869579 ACCTCATATGGTGTAATAAGCCTG 58.130 41.667 2.13 0.00 39.17 4.85
2226 4846 5.846714 AGACCTCATATGGTGTAATAAGCCT 59.153 40.000 2.13 0.00 41.00 4.58
2227 4847 6.014156 AGAGACCTCATATGGTGTAATAAGCC 60.014 42.308 2.13 0.00 41.00 4.35
2228 4848 6.870965 CAGAGACCTCATATGGTGTAATAAGC 59.129 42.308 2.13 0.00 41.00 3.09
2232 4852 4.904251 AGCAGAGACCTCATATGGTGTAAT 59.096 41.667 2.13 0.00 41.00 1.89
2233 4853 4.290093 AGCAGAGACCTCATATGGTGTAA 58.710 43.478 2.13 0.00 41.00 2.41
2243 4989 4.321718 CTTTTGATTGAGCAGAGACCTCA 58.678 43.478 0.00 0.00 37.54 3.86
2266 5012 4.090642 CGTCGATCTTTCCATGCTATTAGC 59.909 45.833 8.80 8.80 42.82 3.09
2273 5019 0.940126 ATGCGTCGATCTTTCCATGC 59.060 50.000 0.00 0.00 0.00 4.06
2280 5026 0.807667 GCACTGGATGCGTCGATCTT 60.808 55.000 0.00 0.00 46.55 2.40
2305 5051 0.323451 TCTGACCGGAAGAGCTGCTA 60.323 55.000 9.46 0.00 0.00 3.49
2310 5062 1.513622 GGACTCTGACCGGAAGAGC 59.486 63.158 27.85 21.88 44.22 4.09
2330 5082 3.482232 CTCCGTGCCATCCATCCCC 62.482 68.421 0.00 0.00 0.00 4.81
2344 5096 1.448540 GACACACATGGCTCCTCCG 60.449 63.158 0.00 0.00 37.80 4.63
2396 5155 4.452455 ACAAAAATGTCGGTCTGATCTGAC 59.548 41.667 21.08 21.08 42.21 3.51
2471 5246 4.052159 CAGTTGATACTGGTAGCTGAGG 57.948 50.000 5.76 0.00 46.52 3.86
2531 8137 5.220548 CGTGAGGAATATGCAATGCTATAGC 60.221 44.000 18.18 18.18 42.50 2.97
2539 8149 2.615447 CACTGCGTGAGGAATATGCAAT 59.385 45.455 0.00 0.00 39.36 3.56
2554 8164 1.202568 CACGAAACAGAGCACTGCG 59.797 57.895 11.37 9.32 46.95 5.18
2558 8168 0.534203 TTCCCCACGAAACAGAGCAC 60.534 55.000 0.00 0.00 0.00 4.40
2572 8205 5.812127 GCACATATTCAAATCAAAGTTCCCC 59.188 40.000 0.00 0.00 0.00 4.81
2573 8206 6.397272 TGCACATATTCAAATCAAAGTTCCC 58.603 36.000 0.00 0.00 0.00 3.97
2631 8388 0.526211 TGGCAGCACGTAGTCAGTAG 59.474 55.000 0.00 0.00 41.61 2.57
2697 8835 4.907879 AGCTTTTGAGACTTTTCTGGTG 57.092 40.909 0.00 0.00 29.47 4.17
2702 8846 6.787085 TGCTACTAGCTTTTGAGACTTTTC 57.213 37.500 9.49 0.00 42.97 2.29
2822 8977 4.115199 GCCGGGAAGATGCCAGGT 62.115 66.667 2.18 0.00 44.14 4.00
2835 8996 4.659172 TGTGCTGGAAAGGGCCGG 62.659 66.667 0.00 0.00 37.37 6.13
2836 8997 1.743321 TTTTGTGCTGGAAAGGGCCG 61.743 55.000 0.00 0.00 0.00 6.13
2837 8998 0.033920 CTTTTGTGCTGGAAAGGGCC 59.966 55.000 0.00 0.00 30.99 5.80
2838 8999 0.601046 GCTTTTGTGCTGGAAAGGGC 60.601 55.000 7.87 0.00 34.30 5.19
2906 9072 9.670442 ACATTATAGGATGAAGGGAGTAGTAAA 57.330 33.333 0.00 0.00 0.00 2.01
2913 9079 8.774586 CGTTTTTACATTATAGGATGAAGGGAG 58.225 37.037 0.00 0.00 0.00 4.30
2914 9080 8.269317 ACGTTTTTACATTATAGGATGAAGGGA 58.731 33.333 0.00 0.00 0.00 4.20
2915 9081 8.446599 ACGTTTTTACATTATAGGATGAAGGG 57.553 34.615 0.00 0.00 0.00 3.95
2928 9094 8.735837 CGCTAGTGTTAAAAACGTTTTTACATT 58.264 29.630 34.39 29.72 40.99 2.71
2929 9095 7.909641 ACGCTAGTGTTAAAAACGTTTTTACAT 59.090 29.630 34.39 24.45 40.99 2.29
2930 9096 7.239972 ACGCTAGTGTTAAAAACGTTTTTACA 58.760 30.769 34.39 29.98 40.99 2.41
2931 9097 7.649214 ACGCTAGTGTTAAAAACGTTTTTAC 57.351 32.000 34.39 27.89 40.99 2.01
2932 9098 8.599774 ACTACGCTAGTGTTAAAAACGTTTTTA 58.400 29.630 32.10 32.10 38.24 1.52
2933 9099 7.463544 ACTACGCTAGTGTTAAAAACGTTTTT 58.536 30.769 33.94 33.94 39.44 1.94
2934 9100 7.003939 ACTACGCTAGTGTTAAAAACGTTTT 57.996 32.000 20.26 20.26 37.69 2.43
2935 9101 6.588348 ACTACGCTAGTGTTAAAAACGTTT 57.412 33.333 15.28 7.96 37.69 3.60
2953 9119 8.976715 AACATAAGAACGTTTTTAACACTACG 57.023 30.769 14.41 0.00 39.71 3.51
2958 9124 8.248945 TCCCAAAACATAAGAACGTTTTTAACA 58.751 29.630 14.41 0.00 42.00 2.41
2964 9130 5.591067 TCTGTCCCAAAACATAAGAACGTTT 59.409 36.000 0.46 0.00 36.92 3.60
2967 9212 4.154195 CCTCTGTCCCAAAACATAAGAACG 59.846 45.833 0.00 0.00 0.00 3.95
2968 9213 5.313712 TCCTCTGTCCCAAAACATAAGAAC 58.686 41.667 0.00 0.00 0.00 3.01
2969 9214 5.576563 TCCTCTGTCCCAAAACATAAGAA 57.423 39.130 0.00 0.00 0.00 2.52
3026 9287 1.750778 TCCGTCCCGTAATAAGTGTCC 59.249 52.381 0.00 0.00 0.00 4.02
3092 9353 1.528129 GTCTTCACCTTTGGCCTCAG 58.472 55.000 3.32 0.00 0.00 3.35
3148 9415 1.688735 CTCCCATTAGATCACGCCTCA 59.311 52.381 0.00 0.00 0.00 3.86
3152 9419 1.069204 TCAGCTCCCATTAGATCACGC 59.931 52.381 0.00 0.00 0.00 5.34
3160 9427 2.224281 CGGCTATTGTCAGCTCCCATTA 60.224 50.000 0.00 0.00 41.50 1.90
3236 9535 0.319900 CACCCCGATCAATAGCTCCG 60.320 60.000 0.00 0.00 0.00 4.63
3295 10577 1.850755 TCCCCTCAACCTTCCCCAC 60.851 63.158 0.00 0.00 0.00 4.61
3324 10621 2.922740 TTACTTTCTCCAACAGCGGT 57.077 45.000 0.00 0.00 0.00 5.68
3332 10649 8.062065 AGAAAACACACATTTTACTTTCTCCA 57.938 30.769 0.00 0.00 31.90 3.86
3449 10779 5.273674 AGTGATGATCTCATGGTGTAGTG 57.726 43.478 0.00 0.00 36.57 2.74
3521 11604 6.955963 GCGTCAGATCAAAACATAGTTAAGTG 59.044 38.462 0.00 0.00 0.00 3.16
3531 11614 0.034198 TCCCGCGTCAGATCAAAACA 59.966 50.000 4.92 0.00 0.00 2.83
3532 11615 1.369625 ATCCCGCGTCAGATCAAAAC 58.630 50.000 4.92 0.00 0.00 2.43
3538 11621 0.610174 ATGCATATCCCGCGTCAGAT 59.390 50.000 4.92 7.07 0.00 2.90
3683 11775 3.294493 TTGCGCTGGAAGTTGCCC 61.294 61.111 9.73 0.00 36.77 5.36
3869 11996 3.194116 CAGTTATGGATTGGCAGCTTTGT 59.806 43.478 0.00 0.00 0.00 2.83
3877 12004 1.940613 GTCCGTCAGTTATGGATTGGC 59.059 52.381 0.00 0.00 45.27 4.52
3927 12097 1.304713 ACCACCGTCGGGATGTACT 60.305 57.895 17.28 0.00 36.97 2.73
4223 12393 4.320057 GCTCTTGAACCTCTTGTTGTCATG 60.320 45.833 0.00 0.00 37.29 3.07
4465 12639 6.070824 TGGTAGCTTCTGTCTATCACAAATGA 60.071 38.462 0.00 0.00 39.83 2.57
4466 12640 6.108687 TGGTAGCTTCTGTCTATCACAAATG 58.891 40.000 0.00 0.00 33.31 2.32
4504 12681 2.878406 GTTGGTTAGTGCTGCTTTCTGA 59.122 45.455 0.00 0.00 0.00 3.27
4529 12706 2.498167 CAGAACACAGGGGAGAACAAG 58.502 52.381 0.00 0.00 0.00 3.16
4565 12742 3.507622 GCTTCTTGTATTTTGGAGGCTGT 59.492 43.478 0.00 0.00 0.00 4.40
4570 12747 4.919754 GCACTTGCTTCTTGTATTTTGGAG 59.080 41.667 0.00 0.00 38.21 3.86
4584 12764 4.260170 TGGAACAAATTTTGCACTTGCTT 58.740 34.783 9.04 0.00 37.40 3.91
4585 12765 3.871485 TGGAACAAATTTTGCACTTGCT 58.129 36.364 9.04 0.00 37.40 3.91
4618 12798 2.358737 GTTGTCGAGGCCACTGGG 60.359 66.667 5.01 0.00 37.18 4.45
4624 12804 2.922335 GCAAATTTCAGTTGTCGAGGCC 60.922 50.000 0.00 0.00 0.00 5.19
4630 12811 9.508567 GGAATAGAATAGCAAATTTCAGTTGTC 57.491 33.333 0.00 0.00 0.00 3.18
4643 12824 8.085909 TCGATGTTTAATCGGAATAGAATAGCA 58.914 33.333 7.78 0.00 41.45 3.49
4659 12840 7.204604 TCGGCTTCACTTATATCGATGTTTAA 58.795 34.615 8.54 2.96 0.00 1.52
4664 12845 7.812309 TTAATCGGCTTCACTTATATCGATG 57.188 36.000 8.54 0.00 36.27 3.84
4671 12852 6.513180 TCGATCTTTAATCGGCTTCACTTAT 58.487 36.000 7.50 0.00 41.45 1.73
4672 12853 5.898174 TCGATCTTTAATCGGCTTCACTTA 58.102 37.500 7.50 0.00 41.45 2.24
4673 12854 4.755411 TCGATCTTTAATCGGCTTCACTT 58.245 39.130 7.50 0.00 41.45 3.16
4674 12855 4.386867 TCGATCTTTAATCGGCTTCACT 57.613 40.909 7.50 0.00 41.45 3.41
4675 12856 6.952935 ATATCGATCTTTAATCGGCTTCAC 57.047 37.500 0.00 0.00 41.45 3.18
4676 12857 7.275779 GCTTATATCGATCTTTAATCGGCTTCA 59.724 37.037 0.00 0.00 41.45 3.02
4677 12858 7.513814 CGCTTATATCGATCTTTAATCGGCTTC 60.514 40.741 0.00 0.00 41.45 3.86
4678 12859 6.253727 CGCTTATATCGATCTTTAATCGGCTT 59.746 38.462 0.00 0.00 41.45 4.35
4679 12860 5.744345 CGCTTATATCGATCTTTAATCGGCT 59.256 40.000 0.00 0.00 41.45 5.52
4680 12861 5.742453 TCGCTTATATCGATCTTTAATCGGC 59.258 40.000 0.00 0.00 41.45 5.54
4681 12862 7.513814 GCTTCGCTTATATCGATCTTTAATCGG 60.514 40.741 0.00 0.00 41.45 4.18
4682 12863 7.323719 GCTTCGCTTATATCGATCTTTAATCG 58.676 38.462 0.00 6.85 42.38 3.34
4683 12864 7.513814 CGGCTTCGCTTATATCGATCTTTAATC 60.514 40.741 0.00 0.00 35.75 1.75
4684 12865 6.253727 CGGCTTCGCTTATATCGATCTTTAAT 59.746 38.462 0.00 0.00 35.75 1.40
4685 12866 5.571741 CGGCTTCGCTTATATCGATCTTTAA 59.428 40.000 0.00 0.00 35.75 1.52
4686 12867 5.093457 CGGCTTCGCTTATATCGATCTTTA 58.907 41.667 0.00 0.00 35.75 1.85
4687 12868 3.921021 CGGCTTCGCTTATATCGATCTTT 59.079 43.478 0.00 0.00 35.75 2.52
4688 12869 3.190744 TCGGCTTCGCTTATATCGATCTT 59.809 43.478 0.00 0.00 35.75 2.40
4689 12870 2.747989 TCGGCTTCGCTTATATCGATCT 59.252 45.455 0.00 0.00 35.75 2.75
4690 12871 3.102276 CTCGGCTTCGCTTATATCGATC 58.898 50.000 0.00 0.00 35.75 3.69
4691 12872 2.732597 GCTCGGCTTCGCTTATATCGAT 60.733 50.000 2.16 2.16 35.75 3.59
4692 12873 1.401148 GCTCGGCTTCGCTTATATCGA 60.401 52.381 0.00 0.00 0.00 3.59
4693 12874 0.985549 GCTCGGCTTCGCTTATATCG 59.014 55.000 0.00 0.00 0.00 2.92
4694 12875 2.065993 TGCTCGGCTTCGCTTATATC 57.934 50.000 0.00 0.00 0.00 1.63
4695 12876 2.738846 CAATGCTCGGCTTCGCTTATAT 59.261 45.455 0.00 0.00 0.00 0.86
4696 12877 2.135139 CAATGCTCGGCTTCGCTTATA 58.865 47.619 0.00 0.00 0.00 0.98
4697 12878 0.940126 CAATGCTCGGCTTCGCTTAT 59.060 50.000 0.00 0.00 0.00 1.73
4715 12896 3.128259 GCTCATGCGTCAGAGTTCA 57.872 52.632 0.00 0.00 34.39 3.18
4777 12983 2.864343 CCGTTTCTTATTACGAGCAGGG 59.136 50.000 0.00 0.00 40.03 4.45
4786 12992 3.059634 GCGCAATGCCGTTTCTTATTA 57.940 42.857 0.30 0.00 37.76 0.98
4821 13028 0.455005 CCGTAGAAGGTCCGAGGAAC 59.545 60.000 0.00 0.00 0.00 3.62
4822 13029 0.329261 TCCGTAGAAGGTCCGAGGAA 59.671 55.000 0.00 0.00 0.00 3.36
4824 13031 2.267174 TATCCGTAGAAGGTCCGAGG 57.733 55.000 0.00 0.00 0.00 4.63
4826 13033 4.019174 AGTTTTATCCGTAGAAGGTCCGA 58.981 43.478 0.00 0.00 0.00 4.55
4827 13034 4.110482 CAGTTTTATCCGTAGAAGGTCCG 58.890 47.826 0.00 0.00 0.00 4.79
4828 13035 5.082251 ACAGTTTTATCCGTAGAAGGTCC 57.918 43.478 0.00 0.00 0.00 4.46
4870 13081 6.704493 TGTAACAACAGTAGAAAGAAAGCGAT 59.296 34.615 0.00 0.00 0.00 4.58
4918 13129 0.036306 ACCTCGGCGGAATGACTTTT 59.964 50.000 7.21 0.00 36.31 2.27
4954 13165 3.072468 TTCCTAGTGTCCCCCGCG 61.072 66.667 0.00 0.00 0.00 6.46
4995 13206 6.173339 AGCATCTATTTTGAGAACTTTCCGA 58.827 36.000 0.00 0.00 0.00 4.55
4996 13207 6.428385 AGCATCTATTTTGAGAACTTTCCG 57.572 37.500 0.00 0.00 0.00 4.30
5079 13291 1.300620 GCAAACAAACCCTTCCGCC 60.301 57.895 0.00 0.00 0.00 6.13
5080 13292 0.955905 TAGCAAACAAACCCTTCCGC 59.044 50.000 0.00 0.00 0.00 5.54
5207 13419 3.858868 GACGTGACGCCTCCAGCAA 62.859 63.158 4.25 0.00 44.04 3.91
5316 13528 2.103263 AGACATACTTCCTTCGATGGCC 59.897 50.000 12.42 0.00 0.00 5.36
5385 13597 4.201724 GCGCTCTTCGATCAATAAACTTGT 60.202 41.667 0.00 0.00 41.67 3.16
5411 13624 2.549754 CGATTTCAACTTGGTGTCAGCT 59.450 45.455 3.30 0.00 0.00 4.24
5412 13625 2.548057 TCGATTTCAACTTGGTGTCAGC 59.452 45.455 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.