Multiple sequence alignment - TraesCS4B01G004200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G004200 chr4B 100.000 3011 0 0 1 3011 2712624 2709614 0 5561
1 TraesCS4B01G004200 chr4B 93.761 1779 102 6 765 2540 97792390 97790618 0 2662
2 TraesCS4B01G004200 chr4B 98.208 1116 17 3 764 1877 535059230 535060344 0 1947
3 TraesCS4B01G004200 chr4B 99.218 767 6 0 1 767 2728713 2727947 0 1384
4 TraesCS4B01G004200 chr7A 97.865 1780 36 2 764 2541 606193441 606195220 0 3075
5 TraesCS4B01G004200 chr7A 99.481 771 4 0 1 771 89172099 89171329 0 1402
6 TraesCS4B01G004200 chr7A 99.478 767 4 0 1 767 609423291 609422525 0 1395
7 TraesCS4B01G004200 chr7A 99.476 764 4 0 1 764 609414515 609413752 0 1389
8 TraesCS4B01G004200 chr7A 99.476 763 4 0 1 763 460603211 460603973 0 1387
9 TraesCS4B01G004200 chrUn 97.754 1781 37 3 764 2541 122646978 122648758 0 3064
10 TraesCS4B01G004200 chrUn 94.027 452 22 5 2562 3010 346948658 346949107 0 680
11 TraesCS4B01G004200 chr3D 95.340 1781 79 4 772 2549 384008839 384010618 0 2826
12 TraesCS4B01G004200 chr7B 97.886 1561 31 2 980 2538 51266276 51267836 0 2699
13 TraesCS4B01G004200 chr5B 96.225 1563 30 5 979 2538 474614615 474613079 0 2532
14 TraesCS4B01G004200 chr6B 95.704 1513 55 8 1039 2543 690878403 690876893 0 2425
15 TraesCS4B01G004200 chr2A 92.527 1405 78 7 764 2143 173514670 173513268 0 1988
16 TraesCS4B01G004200 chr6A 92.390 1406 70 15 764 2143 511525946 511527340 0 1969
17 TraesCS4B01G004200 chr6A 99.607 763 3 0 1 763 551797535 551796773 0 1393
18 TraesCS4B01G004200 chr6A 99.218 767 6 0 1 767 551805374 551804608 0 1384
19 TraesCS4B01G004200 chr3A 99.738 763 2 0 1 763 620690929 620690167 0 1399
20 TraesCS4B01G004200 chr5A 99.476 763 4 0 1 763 509801158 509800396 0 1387


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G004200 chr4B 2709614 2712624 3010 True 5561 5561 100.000 1 3011 1 chr4B.!!$R1 3010
1 TraesCS4B01G004200 chr4B 97790618 97792390 1772 True 2662 2662 93.761 765 2540 1 chr4B.!!$R3 1775
2 TraesCS4B01G004200 chr4B 535059230 535060344 1114 False 1947 1947 98.208 764 1877 1 chr4B.!!$F1 1113
3 TraesCS4B01G004200 chr4B 2727947 2728713 766 True 1384 1384 99.218 1 767 1 chr4B.!!$R2 766
4 TraesCS4B01G004200 chr7A 606193441 606195220 1779 False 3075 3075 97.865 764 2541 1 chr7A.!!$F2 1777
5 TraesCS4B01G004200 chr7A 89171329 89172099 770 True 1402 1402 99.481 1 771 1 chr7A.!!$R1 770
6 TraesCS4B01G004200 chr7A 609422525 609423291 766 True 1395 1395 99.478 1 767 1 chr7A.!!$R3 766
7 TraesCS4B01G004200 chr7A 609413752 609414515 763 True 1389 1389 99.476 1 764 1 chr7A.!!$R2 763
8 TraesCS4B01G004200 chr7A 460603211 460603973 762 False 1387 1387 99.476 1 763 1 chr7A.!!$F1 762
9 TraesCS4B01G004200 chrUn 122646978 122648758 1780 False 3064 3064 97.754 764 2541 1 chrUn.!!$F1 1777
10 TraesCS4B01G004200 chr3D 384008839 384010618 1779 False 2826 2826 95.340 772 2549 1 chr3D.!!$F1 1777
11 TraesCS4B01G004200 chr7B 51266276 51267836 1560 False 2699 2699 97.886 980 2538 1 chr7B.!!$F1 1558
12 TraesCS4B01G004200 chr5B 474613079 474614615 1536 True 2532 2532 96.225 979 2538 1 chr5B.!!$R1 1559
13 TraesCS4B01G004200 chr6B 690876893 690878403 1510 True 2425 2425 95.704 1039 2543 1 chr6B.!!$R1 1504
14 TraesCS4B01G004200 chr2A 173513268 173514670 1402 True 1988 1988 92.527 764 2143 1 chr2A.!!$R1 1379
15 TraesCS4B01G004200 chr6A 511525946 511527340 1394 False 1969 1969 92.390 764 2143 1 chr6A.!!$F1 1379
16 TraesCS4B01G004200 chr6A 551796773 551797535 762 True 1393 1393 99.607 1 763 1 chr6A.!!$R1 762
17 TraesCS4B01G004200 chr6A 551804608 551805374 766 True 1384 1384 99.218 1 767 1 chr6A.!!$R2 766
18 TraesCS4B01G004200 chr3A 620690167 620690929 762 True 1399 1399 99.738 1 763 1 chr3A.!!$R1 762
19 TraesCS4B01G004200 chr5A 509800396 509801158 762 True 1387 1387 99.476 1 763 1 chr5A.!!$R1 762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 794 3.057736 GCTGAAACATGATTGTGAGCTGT 60.058 43.478 0.0 0.0 35.83 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2591 2695 0.109913 GATCCATGCTGCTCCCATCA 59.89 55.0 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 5.197451 TGGAGGACTTCAATCTACTCTCTC 58.803 45.833 0.00 0.00 0.00 3.20
793 794 3.057736 GCTGAAACATGATTGTGAGCTGT 60.058 43.478 0.00 0.00 35.83 4.40
853 854 5.124457 GTGTGCTGGACTTCATGTTTATGAT 59.876 40.000 0.00 0.00 42.60 2.45
856 857 6.763135 GTGCTGGACTTCATGTTTATGATCTA 59.237 38.462 0.00 0.00 42.60 1.98
931 974 9.109393 TGTTATTAACTTCTGGATTGTCTATGC 57.891 33.333 7.99 0.00 0.00 3.14
1132 1175 6.371548 AGTTGCAAAGCGTATATCTTCTTTCA 59.628 34.615 0.00 0.00 0.00 2.69
1581 1627 0.035036 GCCCCTAGGAACGCCTATTC 59.965 60.000 11.48 0.00 45.54 1.75
1734 1781 7.177878 TCAAATAAGAAGAGAAAGAGGGCATT 58.822 34.615 0.00 0.00 0.00 3.56
2544 2648 0.536460 ACCAAACACACCCTAAGGCG 60.536 55.000 0.00 0.00 36.11 5.52
2549 2653 2.681064 ACACCCTAAGGCGCCGTA 60.681 61.111 23.20 22.03 36.11 4.02
2550 2654 2.106332 CACCCTAAGGCGCCGTAG 59.894 66.667 34.26 34.26 36.11 3.51
2551 2655 2.043652 ACCCTAAGGCGCCGTAGA 60.044 61.111 40.00 16.96 36.11 2.59
2552 2656 2.125961 ACCCTAAGGCGCCGTAGAG 61.126 63.158 40.00 32.91 36.11 2.43
2553 2657 2.728817 CCTAAGGCGCCGTAGAGG 59.271 66.667 40.00 28.67 44.97 3.69
2554 2658 1.826921 CCTAAGGCGCCGTAGAGGA 60.827 63.158 40.00 15.50 45.00 3.71
2555 2659 1.655329 CTAAGGCGCCGTAGAGGAG 59.345 63.158 36.85 17.98 45.00 3.69
2560 2664 2.885861 CGCCGTAGAGGAGCACTT 59.114 61.111 0.00 0.00 45.00 3.16
2561 2665 1.517257 CGCCGTAGAGGAGCACTTG 60.517 63.158 0.00 0.00 45.00 3.16
2562 2666 1.153549 GCCGTAGAGGAGCACTTGG 60.154 63.158 0.00 0.00 45.00 3.61
2563 2667 1.153549 CCGTAGAGGAGCACTTGGC 60.154 63.158 0.00 0.00 45.00 4.52
2572 2676 3.730761 GCACTTGGCTGCGGACTG 61.731 66.667 0.00 0.00 40.25 3.51
2573 2677 3.052082 CACTTGGCTGCGGACTGG 61.052 66.667 0.00 0.00 0.00 4.00
2574 2678 3.560251 ACTTGGCTGCGGACTGGT 61.560 61.111 0.00 0.00 0.00 4.00
2575 2679 3.052082 CTTGGCTGCGGACTGGTG 61.052 66.667 0.00 0.00 0.00 4.17
2576 2680 4.641645 TTGGCTGCGGACTGGTGG 62.642 66.667 0.00 0.00 0.00 4.61
2578 2682 4.767255 GGCTGCGGACTGGTGGAG 62.767 72.222 0.00 0.00 0.00 3.86
2579 2683 4.767255 GCTGCGGACTGGTGGAGG 62.767 72.222 0.00 0.00 0.00 4.30
2580 2684 4.087892 CTGCGGACTGGTGGAGGG 62.088 72.222 0.00 0.00 0.00 4.30
2592 2696 3.775654 GGAGGGCCACGTCTCCTG 61.776 72.222 16.30 0.00 44.54 3.86
2593 2697 2.680352 GAGGGCCACGTCTCCTGA 60.680 66.667 6.18 0.00 0.00 3.86
2594 2698 2.039624 AGGGCCACGTCTCCTGAT 59.960 61.111 6.18 0.00 0.00 2.90
2595 2699 2.187946 GGGCCACGTCTCCTGATG 59.812 66.667 4.39 0.00 35.43 3.07
2596 2700 2.187946 GGCCACGTCTCCTGATGG 59.812 66.667 0.00 0.00 33.67 3.51
2597 2701 2.187946 GCCACGTCTCCTGATGGG 59.812 66.667 0.00 0.00 33.67 4.00
2598 2702 2.359169 GCCACGTCTCCTGATGGGA 61.359 63.158 0.00 0.00 42.77 4.37
2605 2709 4.078167 TCCTGATGGGAGCAGCAT 57.922 55.556 0.00 0.00 39.58 3.79
2606 2710 1.530283 TCCTGATGGGAGCAGCATG 59.470 57.895 0.00 0.00 39.58 4.06
2607 2711 1.528542 CCTGATGGGAGCAGCATGG 60.529 63.158 0.00 0.00 37.23 3.66
2608 2712 1.530283 CTGATGGGAGCAGCATGGA 59.470 57.895 0.00 0.00 35.86 3.41
2609 2713 0.110678 CTGATGGGAGCAGCATGGAT 59.889 55.000 0.00 0.00 35.86 3.41
2610 2714 0.109913 TGATGGGAGCAGCATGGATC 59.890 55.000 0.00 0.00 35.86 3.36
2611 2715 0.109913 GATGGGAGCAGCATGGATCA 59.890 55.000 0.00 0.00 35.86 2.92
2612 2716 0.178998 ATGGGAGCAGCATGGATCAC 60.179 55.000 0.00 0.00 35.86 3.06
2613 2717 1.890979 GGGAGCAGCATGGATCACG 60.891 63.158 0.00 0.00 35.86 4.35
2614 2718 1.144716 GGAGCAGCATGGATCACGA 59.855 57.895 0.00 0.00 35.86 4.35
2615 2719 0.879400 GGAGCAGCATGGATCACGAG 60.879 60.000 0.00 0.00 35.86 4.18
2616 2720 1.497223 GAGCAGCATGGATCACGAGC 61.497 60.000 0.00 0.00 35.86 5.03
2617 2721 2.879070 GCAGCATGGATCACGAGCG 61.879 63.158 0.00 0.00 35.86 5.03
2618 2722 1.227060 CAGCATGGATCACGAGCGA 60.227 57.895 0.00 0.00 0.00 4.93
2619 2723 0.807275 CAGCATGGATCACGAGCGAA 60.807 55.000 0.00 0.00 0.00 4.70
2620 2724 0.529337 AGCATGGATCACGAGCGAAG 60.529 55.000 0.00 0.00 0.00 3.79
2621 2725 0.528466 GCATGGATCACGAGCGAAGA 60.528 55.000 0.00 0.00 0.00 2.87
2622 2726 1.871408 GCATGGATCACGAGCGAAGAT 60.871 52.381 0.00 0.00 0.00 2.40
2623 2727 1.791204 CATGGATCACGAGCGAAGATG 59.209 52.381 0.00 0.00 0.00 2.90
2624 2728 0.817654 TGGATCACGAGCGAAGATGT 59.182 50.000 0.00 0.00 0.00 3.06
2625 2729 2.021457 TGGATCACGAGCGAAGATGTA 58.979 47.619 0.00 0.00 0.00 2.29
2626 2730 2.033424 TGGATCACGAGCGAAGATGTAG 59.967 50.000 0.00 0.00 0.00 2.74
2627 2731 2.033550 GGATCACGAGCGAAGATGTAGT 59.966 50.000 0.00 0.00 0.00 2.73
2628 2732 3.250280 GGATCACGAGCGAAGATGTAGTA 59.750 47.826 0.00 0.00 0.00 1.82
2629 2733 4.261072 GGATCACGAGCGAAGATGTAGTAA 60.261 45.833 0.00 0.00 0.00 2.24
2630 2734 4.895224 TCACGAGCGAAGATGTAGTAAT 57.105 40.909 0.00 0.00 0.00 1.89
2631 2735 5.244785 TCACGAGCGAAGATGTAGTAATT 57.755 39.130 0.00 0.00 0.00 1.40
2632 2736 5.034797 TCACGAGCGAAGATGTAGTAATTG 58.965 41.667 0.00 0.00 0.00 2.32
2633 2737 5.034797 CACGAGCGAAGATGTAGTAATTGA 58.965 41.667 0.00 0.00 0.00 2.57
2634 2738 5.035443 ACGAGCGAAGATGTAGTAATTGAC 58.965 41.667 0.00 0.00 0.00 3.18
2635 2739 4.441415 CGAGCGAAGATGTAGTAATTGACC 59.559 45.833 0.00 0.00 0.00 4.02
2636 2740 5.339008 AGCGAAGATGTAGTAATTGACCA 57.661 39.130 0.00 0.00 0.00 4.02
2637 2741 5.352284 AGCGAAGATGTAGTAATTGACCAG 58.648 41.667 0.00 0.00 0.00 4.00
2638 2742 4.508124 GCGAAGATGTAGTAATTGACCAGG 59.492 45.833 0.00 0.00 0.00 4.45
2639 2743 5.681437 GCGAAGATGTAGTAATTGACCAGGA 60.681 44.000 0.00 0.00 0.00 3.86
2640 2744 5.749109 CGAAGATGTAGTAATTGACCAGGAC 59.251 44.000 0.00 0.00 0.00 3.85
2641 2745 6.620877 AAGATGTAGTAATTGACCAGGACA 57.379 37.500 0.00 0.00 0.00 4.02
2642 2746 6.620877 AGATGTAGTAATTGACCAGGACAA 57.379 37.500 6.82 6.82 0.00 3.18
2643 2747 7.016153 AGATGTAGTAATTGACCAGGACAAA 57.984 36.000 8.50 0.00 0.00 2.83
2644 2748 7.458397 AGATGTAGTAATTGACCAGGACAAAA 58.542 34.615 8.50 0.00 0.00 2.44
2645 2749 6.870971 TGTAGTAATTGACCAGGACAAAAC 57.129 37.500 8.50 9.76 0.00 2.43
2646 2750 6.358178 TGTAGTAATTGACCAGGACAAAACA 58.642 36.000 8.50 5.93 0.00 2.83
2647 2751 7.001674 TGTAGTAATTGACCAGGACAAAACAT 58.998 34.615 8.50 0.00 0.00 2.71
2648 2752 8.158132 TGTAGTAATTGACCAGGACAAAACATA 58.842 33.333 8.50 0.00 0.00 2.29
2649 2753 9.005777 GTAGTAATTGACCAGGACAAAACATAA 57.994 33.333 8.50 0.00 0.00 1.90
2650 2754 8.472007 AGTAATTGACCAGGACAAAACATAAA 57.528 30.769 8.50 0.00 0.00 1.40
2651 2755 9.088987 AGTAATTGACCAGGACAAAACATAAAT 57.911 29.630 8.50 0.00 0.00 1.40
2652 2756 9.353999 GTAATTGACCAGGACAAAACATAAATC 57.646 33.333 8.50 0.00 0.00 2.17
2653 2757 6.968263 TTGACCAGGACAAAACATAAATCA 57.032 33.333 1.38 0.00 0.00 2.57
2654 2758 6.325919 TGACCAGGACAAAACATAAATCAC 57.674 37.500 0.00 0.00 0.00 3.06
2655 2759 5.830457 TGACCAGGACAAAACATAAATCACA 59.170 36.000 0.00 0.00 0.00 3.58
2656 2760 6.322456 TGACCAGGACAAAACATAAATCACAA 59.678 34.615 0.00 0.00 0.00 3.33
2657 2761 6.748132 ACCAGGACAAAACATAAATCACAAG 58.252 36.000 0.00 0.00 0.00 3.16
2658 2762 6.158598 CCAGGACAAAACATAAATCACAAGG 58.841 40.000 0.00 0.00 0.00 3.61
2659 2763 6.015519 CCAGGACAAAACATAAATCACAAGGA 60.016 38.462 0.00 0.00 0.00 3.36
2660 2764 7.309990 CCAGGACAAAACATAAATCACAAGGAT 60.310 37.037 0.00 0.00 38.05 3.24
2661 2765 8.739039 CAGGACAAAACATAAATCACAAGGATA 58.261 33.333 0.00 0.00 34.28 2.59
2662 2766 9.479549 AGGACAAAACATAAATCACAAGGATAT 57.520 29.630 0.00 0.00 34.28 1.63
2673 2777 7.516198 AATCACAAGGATATAATGTCTTGCC 57.484 36.000 0.00 0.00 39.92 4.52
2674 2778 6.252599 TCACAAGGATATAATGTCTTGCCT 57.747 37.500 0.00 0.00 39.92 4.75
2675 2779 7.373617 TCACAAGGATATAATGTCTTGCCTA 57.626 36.000 0.00 0.00 39.92 3.93
2676 2780 7.801104 TCACAAGGATATAATGTCTTGCCTAA 58.199 34.615 0.00 0.00 39.92 2.69
2677 2781 8.271458 TCACAAGGATATAATGTCTTGCCTAAA 58.729 33.333 0.00 0.00 39.92 1.85
2678 2782 8.902806 CACAAGGATATAATGTCTTGCCTAAAA 58.097 33.333 0.00 0.00 39.92 1.52
2679 2783 8.903820 ACAAGGATATAATGTCTTGCCTAAAAC 58.096 33.333 0.00 0.00 39.92 2.43
2680 2784 8.352942 CAAGGATATAATGTCTTGCCTAAAACC 58.647 37.037 0.00 0.00 31.73 3.27
2681 2785 7.582719 AGGATATAATGTCTTGCCTAAAACCA 58.417 34.615 0.00 0.00 0.00 3.67
2682 2786 7.721399 AGGATATAATGTCTTGCCTAAAACCAG 59.279 37.037 0.00 0.00 0.00 4.00
2683 2787 7.719633 GGATATAATGTCTTGCCTAAAACCAGA 59.280 37.037 0.00 0.00 0.00 3.86
2684 2788 9.289782 GATATAATGTCTTGCCTAAAACCAGAT 57.710 33.333 0.00 0.00 0.00 2.90
2686 2790 6.759497 AATGTCTTGCCTAAAACCAGATAC 57.241 37.500 0.00 0.00 0.00 2.24
2687 2791 5.235850 TGTCTTGCCTAAAACCAGATACA 57.764 39.130 0.00 0.00 0.00 2.29
2688 2792 5.001232 TGTCTTGCCTAAAACCAGATACAC 58.999 41.667 0.00 0.00 0.00 2.90
2689 2793 5.221843 TGTCTTGCCTAAAACCAGATACACT 60.222 40.000 0.00 0.00 0.00 3.55
2690 2794 6.014070 TGTCTTGCCTAAAACCAGATACACTA 60.014 38.462 0.00 0.00 0.00 2.74
2691 2795 6.313164 GTCTTGCCTAAAACCAGATACACTAC 59.687 42.308 0.00 0.00 0.00 2.73
2692 2796 5.748670 TGCCTAAAACCAGATACACTACA 57.251 39.130 0.00 0.00 0.00 2.74
2693 2797 5.484715 TGCCTAAAACCAGATACACTACAC 58.515 41.667 0.00 0.00 0.00 2.90
2694 2798 5.012251 TGCCTAAAACCAGATACACTACACA 59.988 40.000 0.00 0.00 0.00 3.72
2695 2799 5.935789 GCCTAAAACCAGATACACTACACAA 59.064 40.000 0.00 0.00 0.00 3.33
2696 2800 6.598064 GCCTAAAACCAGATACACTACACAAT 59.402 38.462 0.00 0.00 0.00 2.71
2697 2801 7.767198 GCCTAAAACCAGATACACTACACAATA 59.233 37.037 0.00 0.00 0.00 1.90
2698 2802 9.832445 CCTAAAACCAGATACACTACACAATAT 57.168 33.333 0.00 0.00 0.00 1.28
2701 2805 9.905713 AAAACCAGATACACTACACAATATGAT 57.094 29.630 0.00 0.00 0.00 2.45
2702 2806 9.547753 AAACCAGATACACTACACAATATGATC 57.452 33.333 0.00 0.00 0.00 2.92
2703 2807 8.250143 ACCAGATACACTACACAATATGATCA 57.750 34.615 0.00 0.00 0.00 2.92
2704 2808 8.144478 ACCAGATACACTACACAATATGATCAC 58.856 37.037 0.00 0.00 0.00 3.06
2705 2809 8.143835 CCAGATACACTACACAATATGATCACA 58.856 37.037 0.00 0.00 0.00 3.58
2706 2810 8.972349 CAGATACACTACACAATATGATCACAC 58.028 37.037 0.00 0.00 0.00 3.82
2707 2811 8.695456 AGATACACTACACAATATGATCACACA 58.305 33.333 0.00 0.00 0.00 3.72
2708 2812 9.313118 GATACACTACACAATATGATCACACAA 57.687 33.333 0.00 0.00 0.00 3.33
2709 2813 7.977789 ACACTACACAATATGATCACACAAA 57.022 32.000 0.00 0.00 0.00 2.83
2710 2814 8.565896 ACACTACACAATATGATCACACAAAT 57.434 30.769 0.00 0.00 0.00 2.32
2711 2815 9.665719 ACACTACACAATATGATCACACAAATA 57.334 29.630 0.00 0.00 0.00 1.40
2721 2825 6.000891 TGATCACACAAATAACTTCAGTGC 57.999 37.500 0.00 0.00 33.69 4.40
2722 2826 5.530543 TGATCACACAAATAACTTCAGTGCA 59.469 36.000 0.00 0.00 33.69 4.57
2723 2827 5.826601 TCACACAAATAACTTCAGTGCAA 57.173 34.783 0.00 0.00 33.69 4.08
2724 2828 5.577835 TCACACAAATAACTTCAGTGCAAC 58.422 37.500 0.00 0.00 33.69 4.17
2725 2829 5.124617 TCACACAAATAACTTCAGTGCAACA 59.875 36.000 0.00 0.00 41.43 3.33
2726 2830 5.804473 CACACAAATAACTTCAGTGCAACAA 59.196 36.000 0.00 0.00 41.43 2.83
2727 2831 6.309980 CACACAAATAACTTCAGTGCAACAAA 59.690 34.615 0.00 0.00 41.43 2.83
2728 2832 6.310224 ACACAAATAACTTCAGTGCAACAAAC 59.690 34.615 0.00 0.00 41.43 2.93
2729 2833 6.309980 CACAAATAACTTCAGTGCAACAAACA 59.690 34.615 0.00 0.00 41.43 2.83
2730 2834 6.531240 ACAAATAACTTCAGTGCAACAAACAG 59.469 34.615 0.00 0.00 41.43 3.16
2731 2835 6.449635 AATAACTTCAGTGCAACAAACAGA 57.550 33.333 0.00 0.00 41.43 3.41
2732 2836 4.361451 AACTTCAGTGCAACAAACAGAG 57.639 40.909 0.00 0.00 41.43 3.35
2733 2837 3.347216 ACTTCAGTGCAACAAACAGAGT 58.653 40.909 0.00 0.00 41.43 3.24
2734 2838 4.513442 ACTTCAGTGCAACAAACAGAGTA 58.487 39.130 0.00 0.00 41.43 2.59
2735 2839 4.572389 ACTTCAGTGCAACAAACAGAGTAG 59.428 41.667 0.00 0.00 41.43 2.57
2736 2840 4.400529 TCAGTGCAACAAACAGAGTAGA 57.599 40.909 0.00 0.00 41.43 2.59
2737 2841 4.960938 TCAGTGCAACAAACAGAGTAGAT 58.039 39.130 0.00 0.00 41.43 1.98
2738 2842 6.096673 TCAGTGCAACAAACAGAGTAGATA 57.903 37.500 0.00 0.00 41.43 1.98
2739 2843 6.701340 TCAGTGCAACAAACAGAGTAGATAT 58.299 36.000 0.00 0.00 41.43 1.63
2740 2844 7.836842 TCAGTGCAACAAACAGAGTAGATATA 58.163 34.615 0.00 0.00 41.43 0.86
2741 2845 8.478066 TCAGTGCAACAAACAGAGTAGATATAT 58.522 33.333 0.00 0.00 41.43 0.86
2742 2846 8.546244 CAGTGCAACAAACAGAGTAGATATATG 58.454 37.037 0.00 0.00 41.43 1.78
2743 2847 8.478066 AGTGCAACAAACAGAGTAGATATATGA 58.522 33.333 0.00 0.00 41.43 2.15
2744 2848 8.543774 GTGCAACAAACAGAGTAGATATATGAC 58.456 37.037 0.00 0.00 36.32 3.06
2745 2849 7.710907 TGCAACAAACAGAGTAGATATATGACC 59.289 37.037 0.00 0.00 0.00 4.02
2746 2850 7.928706 GCAACAAACAGAGTAGATATATGACCT 59.071 37.037 0.00 0.00 0.00 3.85
2747 2851 9.823647 CAACAAACAGAGTAGATATATGACCTT 57.176 33.333 0.00 0.00 0.00 3.50
2749 2853 9.201989 ACAAACAGAGTAGATATATGACCTTCA 57.798 33.333 0.00 0.00 0.00 3.02
2775 2879 6.817765 TTTTAGTGGAGCAAGGTTAGAATG 57.182 37.500 0.00 0.00 0.00 2.67
2776 2880 5.755409 TTAGTGGAGCAAGGTTAGAATGA 57.245 39.130 0.00 0.00 0.00 2.57
2777 2881 3.944087 AGTGGAGCAAGGTTAGAATGAC 58.056 45.455 0.00 0.00 0.00 3.06
2778 2882 3.327757 AGTGGAGCAAGGTTAGAATGACA 59.672 43.478 0.00 0.00 0.00 3.58
2779 2883 4.018960 AGTGGAGCAAGGTTAGAATGACAT 60.019 41.667 0.00 0.00 0.00 3.06
2780 2884 4.702131 GTGGAGCAAGGTTAGAATGACATT 59.298 41.667 0.00 0.00 0.00 2.71
2781 2885 5.880332 GTGGAGCAAGGTTAGAATGACATTA 59.120 40.000 0.00 0.00 0.00 1.90
2782 2886 6.374333 GTGGAGCAAGGTTAGAATGACATTAA 59.626 38.462 0.00 0.00 0.00 1.40
2783 2887 7.067494 GTGGAGCAAGGTTAGAATGACATTAAT 59.933 37.037 0.00 0.00 0.00 1.40
2784 2888 7.615365 TGGAGCAAGGTTAGAATGACATTAATT 59.385 33.333 0.00 0.00 0.00 1.40
2785 2889 8.470002 GGAGCAAGGTTAGAATGACATTAATTT 58.530 33.333 0.00 0.00 0.00 1.82
2786 2890 9.508567 GAGCAAGGTTAGAATGACATTAATTTC 57.491 33.333 0.00 0.00 0.00 2.17
2787 2891 8.184192 AGCAAGGTTAGAATGACATTAATTTCG 58.816 33.333 0.00 0.00 0.00 3.46
2788 2892 7.968405 GCAAGGTTAGAATGACATTAATTTCGT 59.032 33.333 0.00 0.00 0.00 3.85
2789 2893 9.277565 CAAGGTTAGAATGACATTAATTTCGTG 57.722 33.333 0.00 0.00 0.00 4.35
2790 2894 8.786826 AGGTTAGAATGACATTAATTTCGTGA 57.213 30.769 0.00 0.00 0.00 4.35
2791 2895 8.665685 AGGTTAGAATGACATTAATTTCGTGAC 58.334 33.333 0.00 0.00 0.00 3.67
2792 2896 8.447833 GGTTAGAATGACATTAATTTCGTGACA 58.552 33.333 0.00 0.00 0.00 3.58
2793 2897 9.478019 GTTAGAATGACATTAATTTCGTGACAG 57.522 33.333 0.00 0.00 0.00 3.51
2794 2898 7.672983 AGAATGACATTAATTTCGTGACAGT 57.327 32.000 0.00 0.00 0.00 3.55
2795 2899 8.771920 AGAATGACATTAATTTCGTGACAGTA 57.228 30.769 0.00 0.00 0.00 2.74
2796 2900 8.656849 AGAATGACATTAATTTCGTGACAGTAC 58.343 33.333 0.00 0.00 0.00 2.73
2797 2901 8.547967 AATGACATTAATTTCGTGACAGTACT 57.452 30.769 0.00 0.00 0.00 2.73
2798 2902 9.647797 AATGACATTAATTTCGTGACAGTACTA 57.352 29.630 0.00 0.00 0.00 1.82
2799 2903 9.647797 ATGACATTAATTTCGTGACAGTACTAA 57.352 29.630 0.00 0.00 0.00 2.24
2800 2904 9.478768 TGACATTAATTTCGTGACAGTACTAAA 57.521 29.630 0.00 0.00 0.00 1.85
2842 2946 9.775854 CATATTAGCTCTATCATCATAAAGGGG 57.224 37.037 0.00 0.00 0.00 4.79
2843 2947 4.566426 AGCTCTATCATCATAAAGGGGC 57.434 45.455 0.00 0.00 0.00 5.80
2844 2948 3.912528 AGCTCTATCATCATAAAGGGGCA 59.087 43.478 0.00 0.00 0.00 5.36
2845 2949 4.539293 AGCTCTATCATCATAAAGGGGCAT 59.461 41.667 0.00 0.00 0.00 4.40
2846 2950 5.014966 AGCTCTATCATCATAAAGGGGCATT 59.985 40.000 0.00 0.00 0.00 3.56
2847 2951 5.125097 GCTCTATCATCATAAAGGGGCATTG 59.875 44.000 0.00 0.00 0.00 2.82
2848 2952 5.012239 TCTATCATCATAAAGGGGCATTGC 58.988 41.667 0.00 0.00 0.00 3.56
2849 2953 3.029483 TCATCATAAAGGGGCATTGCA 57.971 42.857 11.39 0.00 0.00 4.08
2850 2954 2.694628 TCATCATAAAGGGGCATTGCAC 59.305 45.455 11.39 6.67 0.00 4.57
2851 2955 2.530460 TCATAAAGGGGCATTGCACT 57.470 45.000 11.32 5.05 29.71 4.40
2852 2956 2.101783 TCATAAAGGGGCATTGCACTG 58.898 47.619 11.32 0.00 29.71 3.66
2853 2957 1.826720 CATAAAGGGGCATTGCACTGT 59.173 47.619 11.32 5.73 29.71 3.55
2854 2958 1.255882 TAAAGGGGCATTGCACTGTG 58.744 50.000 11.32 2.76 29.71 3.66
2855 2959 0.760189 AAAGGGGCATTGCACTGTGT 60.760 50.000 11.32 0.00 29.71 3.72
2856 2960 0.760189 AAGGGGCATTGCACTGTGTT 60.760 50.000 11.32 0.00 29.71 3.32
2857 2961 1.005867 GGGGCATTGCACTGTGTTG 60.006 57.895 11.32 6.43 29.71 3.33
2858 2962 1.005867 GGGCATTGCACTGTGTTGG 60.006 57.895 11.39 0.00 0.00 3.77
2859 2963 1.462731 GGGCATTGCACTGTGTTGGA 61.463 55.000 11.39 0.00 0.00 3.53
2860 2964 0.604578 GGCATTGCACTGTGTTGGAT 59.395 50.000 11.39 0.00 0.00 3.41
2861 2965 1.670674 GGCATTGCACTGTGTTGGATG 60.671 52.381 11.39 9.37 0.00 3.51
2862 2966 1.270274 GCATTGCACTGTGTTGGATGA 59.730 47.619 9.86 0.00 0.00 2.92
2863 2967 2.288334 GCATTGCACTGTGTTGGATGAA 60.288 45.455 9.86 0.00 0.00 2.57
2864 2968 3.615592 GCATTGCACTGTGTTGGATGAAT 60.616 43.478 9.86 0.00 0.00 2.57
2865 2969 3.646611 TTGCACTGTGTTGGATGAATG 57.353 42.857 9.86 0.00 0.00 2.67
2866 2970 1.887854 TGCACTGTGTTGGATGAATGG 59.112 47.619 9.86 0.00 0.00 3.16
2867 2971 2.161855 GCACTGTGTTGGATGAATGGA 58.838 47.619 9.86 0.00 0.00 3.41
2868 2972 2.557924 GCACTGTGTTGGATGAATGGAA 59.442 45.455 9.86 0.00 0.00 3.53
2869 2973 3.005684 GCACTGTGTTGGATGAATGGAAA 59.994 43.478 9.86 0.00 0.00 3.13
2870 2974 4.801891 CACTGTGTTGGATGAATGGAAAG 58.198 43.478 0.00 0.00 0.00 2.62
2871 2975 3.828451 ACTGTGTTGGATGAATGGAAAGG 59.172 43.478 0.00 0.00 0.00 3.11
2872 2976 4.081406 CTGTGTTGGATGAATGGAAAGGA 58.919 43.478 0.00 0.00 0.00 3.36
2873 2977 4.081406 TGTGTTGGATGAATGGAAAGGAG 58.919 43.478 0.00 0.00 0.00 3.69
2874 2978 3.091545 TGTTGGATGAATGGAAAGGAGC 58.908 45.455 0.00 0.00 0.00 4.70
2875 2979 3.245371 TGTTGGATGAATGGAAAGGAGCT 60.245 43.478 0.00 0.00 0.00 4.09
2876 2980 3.287867 TGGATGAATGGAAAGGAGCTC 57.712 47.619 4.71 4.71 0.00 4.09
2877 2981 2.848694 TGGATGAATGGAAAGGAGCTCT 59.151 45.455 14.64 0.00 0.00 4.09
2878 2982 4.040047 TGGATGAATGGAAAGGAGCTCTA 58.960 43.478 14.64 0.00 0.00 2.43
2879 2983 4.102210 TGGATGAATGGAAAGGAGCTCTAG 59.898 45.833 14.64 0.00 0.00 2.43
2880 2984 4.346418 GGATGAATGGAAAGGAGCTCTAGA 59.654 45.833 14.64 0.00 0.00 2.43
2881 2985 5.012975 GGATGAATGGAAAGGAGCTCTAGAT 59.987 44.000 14.64 0.00 0.00 1.98
2882 2986 6.212388 GGATGAATGGAAAGGAGCTCTAGATA 59.788 42.308 14.64 0.00 0.00 1.98
2883 2987 6.412362 TGAATGGAAAGGAGCTCTAGATAC 57.588 41.667 14.64 0.00 0.00 2.24
2884 2988 6.139671 TGAATGGAAAGGAGCTCTAGATACT 58.860 40.000 14.64 0.00 0.00 2.12
2885 2989 7.298374 TGAATGGAAAGGAGCTCTAGATACTA 58.702 38.462 14.64 0.00 0.00 1.82
2886 2990 7.231722 TGAATGGAAAGGAGCTCTAGATACTAC 59.768 40.741 14.64 0.00 0.00 2.73
2887 2991 5.386924 TGGAAAGGAGCTCTAGATACTACC 58.613 45.833 14.64 8.67 0.00 3.18
2888 2992 4.768448 GGAAAGGAGCTCTAGATACTACCC 59.232 50.000 14.64 2.52 0.00 3.69
2889 2993 5.458508 GGAAAGGAGCTCTAGATACTACCCT 60.459 48.000 14.64 0.00 0.00 4.34
2890 2994 5.673130 AAGGAGCTCTAGATACTACCCTT 57.327 43.478 14.64 1.14 0.00 3.95
2891 2995 4.993028 AGGAGCTCTAGATACTACCCTTG 58.007 47.826 14.64 0.00 0.00 3.61
2892 2996 4.665957 AGGAGCTCTAGATACTACCCTTGA 59.334 45.833 14.64 0.00 0.00 3.02
2893 2997 5.007682 GGAGCTCTAGATACTACCCTTGAG 58.992 50.000 14.64 0.00 36.06 3.02
2894 2998 5.221966 GGAGCTCTAGATACTACCCTTGAGA 60.222 48.000 14.64 0.00 35.35 3.27
2895 2999 6.463053 AGCTCTAGATACTACCCTTGAGAT 57.537 41.667 0.00 0.00 35.35 2.75
2896 3000 6.858941 AGCTCTAGATACTACCCTTGAGATT 58.141 40.000 0.00 0.00 35.35 2.40
2897 3001 7.302184 AGCTCTAGATACTACCCTTGAGATTT 58.698 38.462 0.00 0.00 35.35 2.17
2898 3002 7.232534 AGCTCTAGATACTACCCTTGAGATTTG 59.767 40.741 0.00 0.00 35.35 2.32
2899 3003 7.291411 TCTAGATACTACCCTTGAGATTTGC 57.709 40.000 0.00 0.00 0.00 3.68
2900 3004 7.069986 TCTAGATACTACCCTTGAGATTTGCT 58.930 38.462 0.00 0.00 0.00 3.91
2901 3005 8.225416 TCTAGATACTACCCTTGAGATTTGCTA 58.775 37.037 0.00 0.00 0.00 3.49
2902 3006 7.296628 AGATACTACCCTTGAGATTTGCTAG 57.703 40.000 0.00 0.00 0.00 3.42
2903 3007 7.069986 AGATACTACCCTTGAGATTTGCTAGA 58.930 38.462 0.00 0.00 0.00 2.43
2904 3008 7.565398 AGATACTACCCTTGAGATTTGCTAGAA 59.435 37.037 0.00 0.00 0.00 2.10
2905 3009 6.567602 ACTACCCTTGAGATTTGCTAGAAT 57.432 37.500 0.00 0.00 0.00 2.40
2906 3010 6.352516 ACTACCCTTGAGATTTGCTAGAATG 58.647 40.000 0.00 0.00 0.00 2.67
2907 3011 5.441718 ACCCTTGAGATTTGCTAGAATGA 57.558 39.130 0.00 0.00 0.00 2.57
2908 3012 5.819991 ACCCTTGAGATTTGCTAGAATGAA 58.180 37.500 0.00 0.00 0.00 2.57
2909 3013 5.649831 ACCCTTGAGATTTGCTAGAATGAAC 59.350 40.000 0.00 0.00 0.00 3.18
2910 3014 5.649395 CCCTTGAGATTTGCTAGAATGAACA 59.351 40.000 0.00 0.00 0.00 3.18
2911 3015 6.183360 CCCTTGAGATTTGCTAGAATGAACAG 60.183 42.308 0.00 0.00 0.00 3.16
2912 3016 5.808042 TGAGATTTGCTAGAATGAACAGC 57.192 39.130 0.00 0.00 35.82 4.40
2913 3017 5.247862 TGAGATTTGCTAGAATGAACAGCA 58.752 37.500 0.00 0.00 43.28 4.41
2918 3022 4.754372 TGCTAGAATGAACAGCAAGTTG 57.246 40.909 0.00 0.00 42.09 3.16
2919 3023 3.503363 TGCTAGAATGAACAGCAAGTTGG 59.497 43.478 4.75 0.00 42.09 3.77
2920 3024 3.753272 GCTAGAATGAACAGCAAGTTGGA 59.247 43.478 4.75 0.00 41.51 3.53
2921 3025 4.142730 GCTAGAATGAACAGCAAGTTGGAG 60.143 45.833 4.75 0.00 41.51 3.86
2922 3026 3.825328 AGAATGAACAGCAAGTTGGAGT 58.175 40.909 4.75 0.00 41.51 3.85
2923 3027 4.973168 AGAATGAACAGCAAGTTGGAGTA 58.027 39.130 4.75 0.00 41.51 2.59
2924 3028 5.376625 AGAATGAACAGCAAGTTGGAGTAA 58.623 37.500 4.75 0.00 41.51 2.24
2925 3029 6.006449 AGAATGAACAGCAAGTTGGAGTAAT 58.994 36.000 4.75 0.00 41.51 1.89
2926 3030 5.633830 ATGAACAGCAAGTTGGAGTAATG 57.366 39.130 4.75 0.00 41.51 1.90
2927 3031 4.713553 TGAACAGCAAGTTGGAGTAATGA 58.286 39.130 4.75 0.00 41.51 2.57
2928 3032 4.756642 TGAACAGCAAGTTGGAGTAATGAG 59.243 41.667 4.75 0.00 41.51 2.90
2929 3033 4.623932 ACAGCAAGTTGGAGTAATGAGA 57.376 40.909 4.75 0.00 0.00 3.27
2930 3034 4.573900 ACAGCAAGTTGGAGTAATGAGAG 58.426 43.478 4.75 0.00 0.00 3.20
2931 3035 4.284490 ACAGCAAGTTGGAGTAATGAGAGA 59.716 41.667 4.75 0.00 0.00 3.10
2932 3036 5.221722 ACAGCAAGTTGGAGTAATGAGAGAA 60.222 40.000 4.75 0.00 0.00 2.87
2933 3037 5.702670 CAGCAAGTTGGAGTAATGAGAGAAA 59.297 40.000 4.75 0.00 0.00 2.52
2934 3038 6.205464 CAGCAAGTTGGAGTAATGAGAGAAAA 59.795 38.462 4.75 0.00 0.00 2.29
2935 3039 6.772716 AGCAAGTTGGAGTAATGAGAGAAAAA 59.227 34.615 4.75 0.00 0.00 1.94
2970 3074 6.494666 TCCCTAACTTCACATAATAGTGGG 57.505 41.667 0.00 0.00 39.93 4.61
2971 3075 5.968167 TCCCTAACTTCACATAATAGTGGGT 59.032 40.000 0.00 0.00 39.93 4.51
2972 3076 6.055588 CCCTAACTTCACATAATAGTGGGTG 58.944 44.000 0.00 0.00 39.93 4.61
2973 3077 6.126883 CCCTAACTTCACATAATAGTGGGTGA 60.127 42.308 0.00 0.00 39.93 4.02
2974 3078 6.986817 CCTAACTTCACATAATAGTGGGTGAG 59.013 42.308 0.00 0.00 40.90 3.51
2975 3079 6.620877 AACTTCACATAATAGTGGGTGAGA 57.379 37.500 0.00 0.00 40.90 3.27
2976 3080 6.814954 ACTTCACATAATAGTGGGTGAGAT 57.185 37.500 0.00 0.00 40.90 2.75
2977 3081 6.586344 ACTTCACATAATAGTGGGTGAGATG 58.414 40.000 0.00 0.00 40.90 2.90
2978 3082 5.551305 TCACATAATAGTGGGTGAGATGG 57.449 43.478 0.00 0.00 39.93 3.51
2979 3083 5.215845 TCACATAATAGTGGGTGAGATGGA 58.784 41.667 0.00 0.00 39.93 3.41
2980 3084 5.665360 TCACATAATAGTGGGTGAGATGGAA 59.335 40.000 0.00 0.00 39.93 3.53
2981 3085 6.157820 TCACATAATAGTGGGTGAGATGGAAA 59.842 38.462 0.00 0.00 39.93 3.13
2982 3086 6.828273 CACATAATAGTGGGTGAGATGGAAAA 59.172 38.462 0.00 0.00 35.88 2.29
2983 3087 6.828785 ACATAATAGTGGGTGAGATGGAAAAC 59.171 38.462 0.00 0.00 0.00 2.43
2984 3088 4.927267 ATAGTGGGTGAGATGGAAAACA 57.073 40.909 0.00 0.00 0.00 2.83
2985 3089 3.593442 AGTGGGTGAGATGGAAAACAA 57.407 42.857 0.00 0.00 0.00 2.83
2986 3090 3.909732 AGTGGGTGAGATGGAAAACAAA 58.090 40.909 0.00 0.00 0.00 2.83
2987 3091 3.636764 AGTGGGTGAGATGGAAAACAAAC 59.363 43.478 0.00 0.00 0.00 2.93
2988 3092 2.962421 TGGGTGAGATGGAAAACAAACC 59.038 45.455 0.00 0.00 0.00 3.27
2989 3093 3.230976 GGGTGAGATGGAAAACAAACCT 58.769 45.455 0.00 0.00 0.00 3.50
2990 3094 4.141135 TGGGTGAGATGGAAAACAAACCTA 60.141 41.667 0.00 0.00 0.00 3.08
2991 3095 4.217767 GGGTGAGATGGAAAACAAACCTAC 59.782 45.833 0.00 0.00 0.00 3.18
2992 3096 4.825085 GGTGAGATGGAAAACAAACCTACA 59.175 41.667 0.00 0.00 0.00 2.74
2993 3097 5.278315 GGTGAGATGGAAAACAAACCTACAC 60.278 44.000 0.00 0.00 0.00 2.90
2994 3098 5.298276 GTGAGATGGAAAACAAACCTACACA 59.702 40.000 0.00 0.00 0.00 3.72
2995 3099 5.530915 TGAGATGGAAAACAAACCTACACAG 59.469 40.000 0.00 0.00 0.00 3.66
2996 3100 4.278419 AGATGGAAAACAAACCTACACAGC 59.722 41.667 0.00 0.00 0.00 4.40
2997 3101 3.357203 TGGAAAACAAACCTACACAGCA 58.643 40.909 0.00 0.00 0.00 4.41
2998 3102 3.957497 TGGAAAACAAACCTACACAGCAT 59.043 39.130 0.00 0.00 0.00 3.79
2999 3103 4.037446 TGGAAAACAAACCTACACAGCATC 59.963 41.667 0.00 0.00 0.00 3.91
3000 3104 4.037446 GGAAAACAAACCTACACAGCATCA 59.963 41.667 0.00 0.00 0.00 3.07
3001 3105 5.451242 GGAAAACAAACCTACACAGCATCAA 60.451 40.000 0.00 0.00 0.00 2.57
3002 3106 4.568152 AACAAACCTACACAGCATCAAC 57.432 40.909 0.00 0.00 0.00 3.18
3003 3107 2.548057 ACAAACCTACACAGCATCAACG 59.452 45.455 0.00 0.00 0.00 4.10
3004 3108 2.805671 CAAACCTACACAGCATCAACGA 59.194 45.455 0.00 0.00 0.00 3.85
3005 3109 2.080286 ACCTACACAGCATCAACGAC 57.920 50.000 0.00 0.00 0.00 4.34
3006 3110 1.618837 ACCTACACAGCATCAACGACT 59.381 47.619 0.00 0.00 0.00 4.18
3007 3111 2.823747 ACCTACACAGCATCAACGACTA 59.176 45.455 0.00 0.00 0.00 2.59
3008 3112 3.257375 ACCTACACAGCATCAACGACTAA 59.743 43.478 0.00 0.00 0.00 2.24
3009 3113 4.081642 ACCTACACAGCATCAACGACTAAT 60.082 41.667 0.00 0.00 0.00 1.73
3010 3114 4.504461 CCTACACAGCATCAACGACTAATC 59.496 45.833 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 0.108186 TCCGTCTTGCAGCATGTAGG 60.108 55.000 8.09 11.77 39.31 3.18
793 794 9.486497 TTTCAGCACATAAAAAGCATATTTCAA 57.514 25.926 0.00 0.00 0.00 2.69
853 854 6.207221 TCAGCAGCTCAAAATCATGTTTTAGA 59.793 34.615 2.25 4.70 0.00 2.10
856 857 5.204409 TCAGCAGCTCAAAATCATGTTTT 57.796 34.783 0.00 0.00 0.00 2.43
931 974 3.070590 TGCACCTCATCATCCATCTACAG 59.929 47.826 0.00 0.00 0.00 2.74
1132 1175 5.461078 GCGTAATAGACACGTCATAACCAAT 59.539 40.000 0.00 0.00 41.41 3.16
1734 1781 0.687354 GTCCTCCTCTGTCAAGCCAA 59.313 55.000 0.00 0.00 0.00 4.52
2544 2648 1.153549 CCAAGTGCTCCTCTACGGC 60.154 63.158 0.00 0.00 0.00 5.68
2555 2659 3.730761 CAGTCCGCAGCCAAGTGC 61.731 66.667 0.00 0.00 40.29 4.40
2556 2660 3.052082 CCAGTCCGCAGCCAAGTG 61.052 66.667 0.00 0.00 0.00 3.16
2557 2661 3.560251 ACCAGTCCGCAGCCAAGT 61.560 61.111 0.00 0.00 0.00 3.16
2558 2662 3.052082 CACCAGTCCGCAGCCAAG 61.052 66.667 0.00 0.00 0.00 3.61
2559 2663 4.641645 CCACCAGTCCGCAGCCAA 62.642 66.667 0.00 0.00 0.00 4.52
2561 2665 4.767255 CTCCACCAGTCCGCAGCC 62.767 72.222 0.00 0.00 0.00 4.85
2562 2666 4.767255 CCTCCACCAGTCCGCAGC 62.767 72.222 0.00 0.00 0.00 5.25
2563 2667 4.087892 CCCTCCACCAGTCCGCAG 62.088 72.222 0.00 0.00 0.00 5.18
2576 2680 2.060980 ATCAGGAGACGTGGCCCTC 61.061 63.158 0.00 0.00 0.00 4.30
2577 2681 2.039624 ATCAGGAGACGTGGCCCT 59.960 61.111 0.00 0.00 0.00 5.19
2578 2682 2.187946 CATCAGGAGACGTGGCCC 59.812 66.667 0.00 0.00 0.00 5.80
2579 2683 2.187946 CCATCAGGAGACGTGGCC 59.812 66.667 0.00 0.00 36.89 5.36
2580 2684 2.187946 CCCATCAGGAGACGTGGC 59.812 66.667 0.00 0.00 38.24 5.01
2581 2685 4.034246 TCCCATCAGGAGACGTGG 57.966 61.111 0.00 0.00 40.93 4.94
2588 2692 1.530283 CATGCTGCTCCCATCAGGA 59.470 57.895 0.00 0.00 44.91 3.86
2589 2693 1.528542 CCATGCTGCTCCCATCAGG 60.529 63.158 0.00 0.00 32.41 3.86
2590 2694 0.110678 ATCCATGCTGCTCCCATCAG 59.889 55.000 0.00 0.00 34.79 2.90
2591 2695 0.109913 GATCCATGCTGCTCCCATCA 59.890 55.000 0.00 0.00 0.00 3.07
2592 2696 0.109913 TGATCCATGCTGCTCCCATC 59.890 55.000 0.00 0.00 0.00 3.51
2593 2697 0.178998 GTGATCCATGCTGCTCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
2594 2698 1.225426 GTGATCCATGCTGCTCCCA 59.775 57.895 0.00 0.00 0.00 4.37
2595 2699 1.890979 CGTGATCCATGCTGCTCCC 60.891 63.158 0.00 0.00 0.00 4.30
2596 2700 0.879400 CTCGTGATCCATGCTGCTCC 60.879 60.000 0.00 0.00 0.00 4.70
2597 2701 1.497223 GCTCGTGATCCATGCTGCTC 61.497 60.000 0.00 0.00 0.00 4.26
2598 2702 1.523258 GCTCGTGATCCATGCTGCT 60.523 57.895 0.00 0.00 0.00 4.24
2599 2703 2.879070 CGCTCGTGATCCATGCTGC 61.879 63.158 0.00 0.00 0.00 5.25
2600 2704 0.807275 TTCGCTCGTGATCCATGCTG 60.807 55.000 0.00 0.00 0.00 4.41
2601 2705 0.529337 CTTCGCTCGTGATCCATGCT 60.529 55.000 0.00 0.00 0.00 3.79
2602 2706 0.528466 TCTTCGCTCGTGATCCATGC 60.528 55.000 0.00 0.00 0.00 4.06
2603 2707 1.791204 CATCTTCGCTCGTGATCCATG 59.209 52.381 0.00 0.00 0.00 3.66
2604 2708 1.410517 ACATCTTCGCTCGTGATCCAT 59.589 47.619 0.00 0.00 0.00 3.41
2605 2709 0.817654 ACATCTTCGCTCGTGATCCA 59.182 50.000 0.00 0.00 0.00 3.41
2606 2710 2.033550 ACTACATCTTCGCTCGTGATCC 59.966 50.000 0.00 0.00 0.00 3.36
2607 2711 3.341857 ACTACATCTTCGCTCGTGATC 57.658 47.619 0.00 0.00 0.00 2.92
2608 2712 4.895224 TTACTACATCTTCGCTCGTGAT 57.105 40.909 0.00 0.00 0.00 3.06
2609 2713 4.895224 ATTACTACATCTTCGCTCGTGA 57.105 40.909 0.00 0.00 0.00 4.35
2610 2714 5.034797 TCAATTACTACATCTTCGCTCGTG 58.965 41.667 0.00 0.00 0.00 4.35
2611 2715 5.035443 GTCAATTACTACATCTTCGCTCGT 58.965 41.667 0.00 0.00 0.00 4.18
2612 2716 4.441415 GGTCAATTACTACATCTTCGCTCG 59.559 45.833 0.00 0.00 0.00 5.03
2613 2717 5.348986 TGGTCAATTACTACATCTTCGCTC 58.651 41.667 0.00 0.00 0.00 5.03
2614 2718 5.339008 TGGTCAATTACTACATCTTCGCT 57.661 39.130 0.00 0.00 0.00 4.93
2615 2719 4.508124 CCTGGTCAATTACTACATCTTCGC 59.492 45.833 0.00 0.00 0.00 4.70
2616 2720 5.749109 GTCCTGGTCAATTACTACATCTTCG 59.251 44.000 0.00 0.00 0.00 3.79
2617 2721 6.640518 TGTCCTGGTCAATTACTACATCTTC 58.359 40.000 0.00 0.00 0.00 2.87
2618 2722 6.620877 TGTCCTGGTCAATTACTACATCTT 57.379 37.500 0.00 0.00 0.00 2.40
2619 2723 6.620877 TTGTCCTGGTCAATTACTACATCT 57.379 37.500 2.14 0.00 0.00 2.90
2620 2724 7.174253 TGTTTTGTCCTGGTCAATTACTACATC 59.826 37.037 7.19 0.00 0.00 3.06
2621 2725 7.001674 TGTTTTGTCCTGGTCAATTACTACAT 58.998 34.615 7.19 0.00 0.00 2.29
2622 2726 6.358178 TGTTTTGTCCTGGTCAATTACTACA 58.642 36.000 7.19 5.10 0.00 2.74
2623 2727 6.870971 TGTTTTGTCCTGGTCAATTACTAC 57.129 37.500 7.19 3.00 0.00 2.73
2624 2728 9.575868 TTTATGTTTTGTCCTGGTCAATTACTA 57.424 29.630 7.19 2.32 0.00 1.82
2625 2729 8.472007 TTTATGTTTTGTCCTGGTCAATTACT 57.528 30.769 7.19 3.36 0.00 2.24
2626 2730 9.353999 GATTTATGTTTTGTCCTGGTCAATTAC 57.646 33.333 7.19 9.10 0.00 1.89
2627 2731 9.083422 TGATTTATGTTTTGTCCTGGTCAATTA 57.917 29.630 7.19 0.00 0.00 1.40
2628 2732 7.872483 GTGATTTATGTTTTGTCCTGGTCAATT 59.128 33.333 7.19 0.00 0.00 2.32
2629 2733 7.015098 TGTGATTTATGTTTTGTCCTGGTCAAT 59.985 33.333 7.19 0.00 0.00 2.57
2630 2734 6.322456 TGTGATTTATGTTTTGTCCTGGTCAA 59.678 34.615 2.14 2.14 0.00 3.18
2631 2735 5.830457 TGTGATTTATGTTTTGTCCTGGTCA 59.170 36.000 0.00 0.00 0.00 4.02
2632 2736 6.325919 TGTGATTTATGTTTTGTCCTGGTC 57.674 37.500 0.00 0.00 0.00 4.02
2633 2737 6.239289 CCTTGTGATTTATGTTTTGTCCTGGT 60.239 38.462 0.00 0.00 0.00 4.00
2634 2738 6.015519 TCCTTGTGATTTATGTTTTGTCCTGG 60.016 38.462 0.00 0.00 0.00 4.45
2635 2739 6.980593 TCCTTGTGATTTATGTTTTGTCCTG 58.019 36.000 0.00 0.00 0.00 3.86
2636 2740 7.781324 ATCCTTGTGATTTATGTTTTGTCCT 57.219 32.000 0.00 0.00 0.00 3.85
2647 2751 9.066892 GGCAAGACATTATATCCTTGTGATTTA 57.933 33.333 0.00 0.00 38.50 1.40
2648 2752 7.781693 AGGCAAGACATTATATCCTTGTGATTT 59.218 33.333 0.00 0.00 38.50 2.17
2649 2753 7.293073 AGGCAAGACATTATATCCTTGTGATT 58.707 34.615 0.00 0.00 38.50 2.57
2650 2754 6.845908 AGGCAAGACATTATATCCTTGTGAT 58.154 36.000 0.00 0.00 38.50 3.06
2651 2755 6.252599 AGGCAAGACATTATATCCTTGTGA 57.747 37.500 0.00 0.00 38.50 3.58
2652 2756 8.450578 TTTAGGCAAGACATTATATCCTTGTG 57.549 34.615 0.00 0.00 38.50 3.33
2653 2757 8.903820 GTTTTAGGCAAGACATTATATCCTTGT 58.096 33.333 0.00 0.00 38.50 3.16
2654 2758 8.352942 GGTTTTAGGCAAGACATTATATCCTTG 58.647 37.037 0.00 0.00 39.06 3.61
2655 2759 8.058847 TGGTTTTAGGCAAGACATTATATCCTT 58.941 33.333 0.00 0.00 0.00 3.36
2656 2760 7.582719 TGGTTTTAGGCAAGACATTATATCCT 58.417 34.615 0.00 0.00 0.00 3.24
2657 2761 7.719633 TCTGGTTTTAGGCAAGACATTATATCC 59.280 37.037 0.00 0.00 0.00 2.59
2658 2762 8.677148 TCTGGTTTTAGGCAAGACATTATATC 57.323 34.615 0.00 0.00 0.00 1.63
2660 2764 9.555727 GTATCTGGTTTTAGGCAAGACATTATA 57.444 33.333 0.00 0.00 0.00 0.98
2661 2765 8.052748 TGTATCTGGTTTTAGGCAAGACATTAT 58.947 33.333 0.00 0.00 0.00 1.28
2662 2766 7.335924 GTGTATCTGGTTTTAGGCAAGACATTA 59.664 37.037 0.00 0.00 0.00 1.90
2663 2767 6.151144 GTGTATCTGGTTTTAGGCAAGACATT 59.849 38.462 0.00 0.00 0.00 2.71
2664 2768 5.648092 GTGTATCTGGTTTTAGGCAAGACAT 59.352 40.000 0.00 0.00 0.00 3.06
2665 2769 5.001232 GTGTATCTGGTTTTAGGCAAGACA 58.999 41.667 0.00 0.00 0.00 3.41
2666 2770 5.246307 AGTGTATCTGGTTTTAGGCAAGAC 58.754 41.667 0.00 0.00 0.00 3.01
2667 2771 5.499004 AGTGTATCTGGTTTTAGGCAAGA 57.501 39.130 0.00 0.00 0.00 3.02
2668 2772 6.092259 GTGTAGTGTATCTGGTTTTAGGCAAG 59.908 42.308 0.00 0.00 0.00 4.01
2669 2773 5.935789 GTGTAGTGTATCTGGTTTTAGGCAA 59.064 40.000 0.00 0.00 0.00 4.52
2670 2774 5.012251 TGTGTAGTGTATCTGGTTTTAGGCA 59.988 40.000 0.00 0.00 0.00 4.75
2671 2775 5.484715 TGTGTAGTGTATCTGGTTTTAGGC 58.515 41.667 0.00 0.00 0.00 3.93
2672 2776 9.832445 ATATTGTGTAGTGTATCTGGTTTTAGG 57.168 33.333 0.00 0.00 0.00 2.69
2675 2779 9.905713 ATCATATTGTGTAGTGTATCTGGTTTT 57.094 29.630 0.00 0.00 0.00 2.43
2676 2780 9.547753 GATCATATTGTGTAGTGTATCTGGTTT 57.452 33.333 0.00 0.00 0.00 3.27
2677 2781 8.704668 TGATCATATTGTGTAGTGTATCTGGTT 58.295 33.333 0.00 0.00 0.00 3.67
2678 2782 8.144478 GTGATCATATTGTGTAGTGTATCTGGT 58.856 37.037 0.00 0.00 0.00 4.00
2679 2783 8.143835 TGTGATCATATTGTGTAGTGTATCTGG 58.856 37.037 0.00 0.00 0.00 3.86
2680 2784 8.972349 GTGTGATCATATTGTGTAGTGTATCTG 58.028 37.037 0.00 0.00 0.00 2.90
2681 2785 8.695456 TGTGTGATCATATTGTGTAGTGTATCT 58.305 33.333 0.00 0.00 0.00 1.98
2682 2786 8.871686 TGTGTGATCATATTGTGTAGTGTATC 57.128 34.615 0.00 0.00 0.00 2.24
2683 2787 9.665719 TTTGTGTGATCATATTGTGTAGTGTAT 57.334 29.630 0.00 0.00 0.00 2.29
2684 2788 9.665719 ATTTGTGTGATCATATTGTGTAGTGTA 57.334 29.630 0.00 0.00 0.00 2.90
2685 2789 7.977789 TTTGTGTGATCATATTGTGTAGTGT 57.022 32.000 0.00 0.00 0.00 3.55
2695 2799 8.400947 GCACTGAAGTTATTTGTGTGATCATAT 58.599 33.333 0.00 0.00 0.00 1.78
2696 2800 7.390162 TGCACTGAAGTTATTTGTGTGATCATA 59.610 33.333 0.00 0.00 0.00 2.15
2697 2801 6.207221 TGCACTGAAGTTATTTGTGTGATCAT 59.793 34.615 0.00 0.00 0.00 2.45
2698 2802 5.530543 TGCACTGAAGTTATTTGTGTGATCA 59.469 36.000 0.00 0.00 0.00 2.92
2699 2803 6.000891 TGCACTGAAGTTATTTGTGTGATC 57.999 37.500 0.00 0.00 0.00 2.92
2700 2804 6.183360 TGTTGCACTGAAGTTATTTGTGTGAT 60.183 34.615 0.00 0.00 0.00 3.06
2701 2805 5.124617 TGTTGCACTGAAGTTATTTGTGTGA 59.875 36.000 0.00 0.00 0.00 3.58
2702 2806 5.339177 TGTTGCACTGAAGTTATTTGTGTG 58.661 37.500 0.00 0.00 0.00 3.82
2703 2807 5.574891 TGTTGCACTGAAGTTATTTGTGT 57.425 34.783 0.00 0.00 0.00 3.72
2704 2808 6.309980 TGTTTGTTGCACTGAAGTTATTTGTG 59.690 34.615 0.00 0.00 0.00 3.33
2705 2809 6.393990 TGTTTGTTGCACTGAAGTTATTTGT 58.606 32.000 0.00 0.00 0.00 2.83
2706 2810 6.751425 TCTGTTTGTTGCACTGAAGTTATTTG 59.249 34.615 0.00 0.00 0.00 2.32
2707 2811 6.862209 TCTGTTTGTTGCACTGAAGTTATTT 58.138 32.000 0.00 0.00 0.00 1.40
2708 2812 6.095440 ACTCTGTTTGTTGCACTGAAGTTATT 59.905 34.615 0.00 0.00 0.00 1.40
2709 2813 5.590259 ACTCTGTTTGTTGCACTGAAGTTAT 59.410 36.000 0.00 0.00 0.00 1.89
2710 2814 4.941263 ACTCTGTTTGTTGCACTGAAGTTA 59.059 37.500 0.00 0.00 0.00 2.24
2711 2815 3.758554 ACTCTGTTTGTTGCACTGAAGTT 59.241 39.130 0.00 0.00 0.00 2.66
2712 2816 3.347216 ACTCTGTTTGTTGCACTGAAGT 58.653 40.909 0.00 0.00 0.00 3.01
2713 2817 4.811024 TCTACTCTGTTTGTTGCACTGAAG 59.189 41.667 0.00 0.00 0.00 3.02
2714 2818 4.765273 TCTACTCTGTTTGTTGCACTGAA 58.235 39.130 0.00 0.00 0.00 3.02
2715 2819 4.400529 TCTACTCTGTTTGTTGCACTGA 57.599 40.909 0.00 0.00 0.00 3.41
2716 2820 6.974932 ATATCTACTCTGTTTGTTGCACTG 57.025 37.500 0.00 0.00 0.00 3.66
2717 2821 8.478066 TCATATATCTACTCTGTTTGTTGCACT 58.522 33.333 0.00 0.00 0.00 4.40
2718 2822 8.543774 GTCATATATCTACTCTGTTTGTTGCAC 58.456 37.037 0.00 0.00 0.00 4.57
2719 2823 7.710907 GGTCATATATCTACTCTGTTTGTTGCA 59.289 37.037 0.00 0.00 0.00 4.08
2720 2824 7.928706 AGGTCATATATCTACTCTGTTTGTTGC 59.071 37.037 0.00 0.00 0.00 4.17
2721 2825 9.823647 AAGGTCATATATCTACTCTGTTTGTTG 57.176 33.333 0.00 0.00 0.00 3.33
2723 2827 9.201989 TGAAGGTCATATATCTACTCTGTTTGT 57.798 33.333 0.00 0.00 0.00 2.83
2751 2855 7.001674 TCATTCTAACCTTGCTCCACTAAAAA 58.998 34.615 0.00 0.00 0.00 1.94
2752 2856 6.430000 GTCATTCTAACCTTGCTCCACTAAAA 59.570 38.462 0.00 0.00 0.00 1.52
2753 2857 5.938125 GTCATTCTAACCTTGCTCCACTAAA 59.062 40.000 0.00 0.00 0.00 1.85
2754 2858 5.012664 TGTCATTCTAACCTTGCTCCACTAA 59.987 40.000 0.00 0.00 0.00 2.24
2755 2859 4.530553 TGTCATTCTAACCTTGCTCCACTA 59.469 41.667 0.00 0.00 0.00 2.74
2756 2860 3.327757 TGTCATTCTAACCTTGCTCCACT 59.672 43.478 0.00 0.00 0.00 4.00
2757 2861 3.674997 TGTCATTCTAACCTTGCTCCAC 58.325 45.455 0.00 0.00 0.00 4.02
2758 2862 4.574674 ATGTCATTCTAACCTTGCTCCA 57.425 40.909 0.00 0.00 0.00 3.86
2759 2863 7.573968 ATTAATGTCATTCTAACCTTGCTCC 57.426 36.000 0.07 0.00 0.00 4.70
2760 2864 9.508567 GAAATTAATGTCATTCTAACCTTGCTC 57.491 33.333 0.07 0.00 0.00 4.26
2761 2865 8.184192 CGAAATTAATGTCATTCTAACCTTGCT 58.816 33.333 0.07 0.00 0.00 3.91
2762 2866 7.968405 ACGAAATTAATGTCATTCTAACCTTGC 59.032 33.333 0.07 0.00 0.00 4.01
2763 2867 9.277565 CACGAAATTAATGTCATTCTAACCTTG 57.722 33.333 0.07 0.00 0.00 3.61
2764 2868 9.226606 TCACGAAATTAATGTCATTCTAACCTT 57.773 29.630 0.07 0.00 0.00 3.50
2765 2869 8.665685 GTCACGAAATTAATGTCATTCTAACCT 58.334 33.333 0.07 0.00 0.00 3.50
2766 2870 8.447833 TGTCACGAAATTAATGTCATTCTAACC 58.552 33.333 0.07 0.00 0.00 2.85
2767 2871 9.478019 CTGTCACGAAATTAATGTCATTCTAAC 57.522 33.333 0.07 0.00 0.00 2.34
2768 2872 9.214957 ACTGTCACGAAATTAATGTCATTCTAA 57.785 29.630 0.07 0.00 0.00 2.10
2769 2873 8.771920 ACTGTCACGAAATTAATGTCATTCTA 57.228 30.769 0.07 0.00 0.00 2.10
2770 2874 7.672983 ACTGTCACGAAATTAATGTCATTCT 57.327 32.000 0.07 0.00 0.00 2.40
2771 2875 8.656849 AGTACTGTCACGAAATTAATGTCATTC 58.343 33.333 0.07 0.00 0.00 2.67
2772 2876 8.547967 AGTACTGTCACGAAATTAATGTCATT 57.452 30.769 6.45 3.06 0.00 2.57
2773 2877 9.647797 TTAGTACTGTCACGAAATTAATGTCAT 57.352 29.630 5.39 0.00 0.00 3.06
2774 2878 9.478768 TTTAGTACTGTCACGAAATTAATGTCA 57.521 29.630 5.39 0.00 0.00 3.58
2816 2920 9.775854 CCCCTTTATGATGATAGAGCTAATATG 57.224 37.037 0.00 0.00 0.00 1.78
2817 2921 8.435982 GCCCCTTTATGATGATAGAGCTAATAT 58.564 37.037 0.00 0.00 0.00 1.28
2818 2922 7.402941 TGCCCCTTTATGATGATAGAGCTAATA 59.597 37.037 0.00 0.00 0.00 0.98
2819 2923 6.216251 TGCCCCTTTATGATGATAGAGCTAAT 59.784 38.462 0.00 0.00 0.00 1.73
2820 2924 5.547666 TGCCCCTTTATGATGATAGAGCTAA 59.452 40.000 0.00 0.00 0.00 3.09
2821 2925 5.093677 TGCCCCTTTATGATGATAGAGCTA 58.906 41.667 0.00 0.00 0.00 3.32
2822 2926 3.912528 TGCCCCTTTATGATGATAGAGCT 59.087 43.478 0.00 0.00 0.00 4.09
2823 2927 4.292186 TGCCCCTTTATGATGATAGAGC 57.708 45.455 0.00 0.00 0.00 4.09
2824 2928 5.125097 GCAATGCCCCTTTATGATGATAGAG 59.875 44.000 0.00 0.00 0.00 2.43
2825 2929 5.012239 GCAATGCCCCTTTATGATGATAGA 58.988 41.667 0.00 0.00 0.00 1.98
2826 2930 4.768448 TGCAATGCCCCTTTATGATGATAG 59.232 41.667 1.53 0.00 0.00 2.08
2827 2931 4.523943 GTGCAATGCCCCTTTATGATGATA 59.476 41.667 1.53 0.00 0.00 2.15
2828 2932 3.322828 GTGCAATGCCCCTTTATGATGAT 59.677 43.478 1.53 0.00 0.00 2.45
2829 2933 2.694628 GTGCAATGCCCCTTTATGATGA 59.305 45.455 1.53 0.00 0.00 2.92
2830 2934 2.696707 AGTGCAATGCCCCTTTATGATG 59.303 45.455 1.53 0.00 0.00 3.07
2831 2935 2.696707 CAGTGCAATGCCCCTTTATGAT 59.303 45.455 0.00 0.00 0.00 2.45
2832 2936 2.101783 CAGTGCAATGCCCCTTTATGA 58.898 47.619 0.00 0.00 0.00 2.15
2833 2937 1.826720 ACAGTGCAATGCCCCTTTATG 59.173 47.619 15.18 0.00 0.00 1.90
2834 2938 1.826720 CACAGTGCAATGCCCCTTTAT 59.173 47.619 15.18 0.00 0.00 1.40
2835 2939 1.255882 CACAGTGCAATGCCCCTTTA 58.744 50.000 15.18 0.00 0.00 1.85
2836 2940 0.760189 ACACAGTGCAATGCCCCTTT 60.760 50.000 15.18 0.00 0.00 3.11
2837 2941 0.760189 AACACAGTGCAATGCCCCTT 60.760 50.000 15.18 0.00 0.00 3.95
2838 2942 1.152483 AACACAGTGCAATGCCCCT 60.152 52.632 15.18 0.00 0.00 4.79
2839 2943 1.005867 CAACACAGTGCAATGCCCC 60.006 57.895 15.18 0.00 0.00 5.80
2840 2944 1.005867 CCAACACAGTGCAATGCCC 60.006 57.895 15.18 0.00 0.00 5.36
2841 2945 0.604578 ATCCAACACAGTGCAATGCC 59.395 50.000 15.18 0.00 0.00 4.40
2842 2946 1.270274 TCATCCAACACAGTGCAATGC 59.730 47.619 15.18 0.00 0.00 3.56
2843 2947 3.646611 TTCATCCAACACAGTGCAATG 57.353 42.857 13.51 13.51 0.00 2.82
2844 2948 3.056393 CCATTCATCCAACACAGTGCAAT 60.056 43.478 0.00 0.00 0.00 3.56
2845 2949 2.296752 CCATTCATCCAACACAGTGCAA 59.703 45.455 0.00 0.00 0.00 4.08
2846 2950 1.887854 CCATTCATCCAACACAGTGCA 59.112 47.619 0.00 0.00 0.00 4.57
2847 2951 2.161855 TCCATTCATCCAACACAGTGC 58.838 47.619 0.00 0.00 0.00 4.40
2848 2952 4.321452 CCTTTCCATTCATCCAACACAGTG 60.321 45.833 0.00 0.00 0.00 3.66
2849 2953 3.828451 CCTTTCCATTCATCCAACACAGT 59.172 43.478 0.00 0.00 0.00 3.55
2850 2954 4.081406 TCCTTTCCATTCATCCAACACAG 58.919 43.478 0.00 0.00 0.00 3.66
2851 2955 4.081406 CTCCTTTCCATTCATCCAACACA 58.919 43.478 0.00 0.00 0.00 3.72
2852 2956 3.119352 GCTCCTTTCCATTCATCCAACAC 60.119 47.826 0.00 0.00 0.00 3.32
2853 2957 3.091545 GCTCCTTTCCATTCATCCAACA 58.908 45.455 0.00 0.00 0.00 3.33
2854 2958 3.359950 AGCTCCTTTCCATTCATCCAAC 58.640 45.455 0.00 0.00 0.00 3.77
2855 2959 3.267812 AGAGCTCCTTTCCATTCATCCAA 59.732 43.478 10.93 0.00 0.00 3.53
2856 2960 2.848694 AGAGCTCCTTTCCATTCATCCA 59.151 45.455 10.93 0.00 0.00 3.41
2857 2961 3.574354 AGAGCTCCTTTCCATTCATCC 57.426 47.619 10.93 0.00 0.00 3.51
2858 2962 5.543507 TCTAGAGCTCCTTTCCATTCATC 57.456 43.478 10.93 0.00 0.00 2.92
2859 2963 6.786959 AGTATCTAGAGCTCCTTTCCATTCAT 59.213 38.462 10.93 0.00 0.00 2.57
2860 2964 6.139671 AGTATCTAGAGCTCCTTTCCATTCA 58.860 40.000 10.93 0.00 0.00 2.57
2861 2965 6.664428 AGTATCTAGAGCTCCTTTCCATTC 57.336 41.667 10.93 0.00 0.00 2.67
2862 2966 6.495526 GGTAGTATCTAGAGCTCCTTTCCATT 59.504 42.308 10.93 0.00 0.00 3.16
2863 2967 6.014012 GGTAGTATCTAGAGCTCCTTTCCAT 58.986 44.000 10.93 0.00 0.00 3.41
2864 2968 5.386924 GGTAGTATCTAGAGCTCCTTTCCA 58.613 45.833 10.93 0.00 0.00 3.53
2865 2969 4.768448 GGGTAGTATCTAGAGCTCCTTTCC 59.232 50.000 10.93 5.63 0.00 3.13
2866 2970 5.637127 AGGGTAGTATCTAGAGCTCCTTTC 58.363 45.833 10.93 0.00 0.00 2.62
2867 2971 5.673130 AGGGTAGTATCTAGAGCTCCTTT 57.327 43.478 10.93 0.00 0.00 3.11
2868 2972 5.134679 TCAAGGGTAGTATCTAGAGCTCCTT 59.865 44.000 10.93 6.46 32.94 3.36
2869 2973 4.665957 TCAAGGGTAGTATCTAGAGCTCCT 59.334 45.833 10.93 1.27 0.00 3.69
2870 2974 4.988029 TCAAGGGTAGTATCTAGAGCTCC 58.012 47.826 10.93 0.00 0.00 4.70
2871 2975 5.871834 TCTCAAGGGTAGTATCTAGAGCTC 58.128 45.833 5.27 5.27 0.00 4.09
2872 2976 5.915744 TCTCAAGGGTAGTATCTAGAGCT 57.084 43.478 0.00 1.70 0.00 4.09
2873 2977 7.375053 CAAATCTCAAGGGTAGTATCTAGAGC 58.625 42.308 0.00 0.00 0.00 4.09
2874 2978 7.232534 AGCAAATCTCAAGGGTAGTATCTAGAG 59.767 40.741 0.00 0.00 0.00 2.43
2875 2979 7.069986 AGCAAATCTCAAGGGTAGTATCTAGA 58.930 38.462 0.00 0.00 0.00 2.43
2876 2980 7.296628 AGCAAATCTCAAGGGTAGTATCTAG 57.703 40.000 0.00 0.00 0.00 2.43
2877 2981 8.225416 TCTAGCAAATCTCAAGGGTAGTATCTA 58.775 37.037 0.00 0.00 34.07 1.98
2878 2982 7.069986 TCTAGCAAATCTCAAGGGTAGTATCT 58.930 38.462 0.00 0.00 34.07 1.98
2879 2983 7.291411 TCTAGCAAATCTCAAGGGTAGTATC 57.709 40.000 0.00 0.00 34.07 2.24
2880 2984 7.676683 TTCTAGCAAATCTCAAGGGTAGTAT 57.323 36.000 0.00 0.00 34.07 2.12
2881 2985 7.344612 TCATTCTAGCAAATCTCAAGGGTAGTA 59.655 37.037 0.00 0.00 34.07 1.82
2882 2986 6.156949 TCATTCTAGCAAATCTCAAGGGTAGT 59.843 38.462 0.00 0.00 34.07 2.73
2883 2987 6.586344 TCATTCTAGCAAATCTCAAGGGTAG 58.414 40.000 0.00 0.00 33.77 3.18
2884 2988 6.560003 TCATTCTAGCAAATCTCAAGGGTA 57.440 37.500 0.00 0.00 0.00 3.69
2885 2989 5.441718 TCATTCTAGCAAATCTCAAGGGT 57.558 39.130 0.00 0.00 0.00 4.34
2886 2990 5.649395 TGTTCATTCTAGCAAATCTCAAGGG 59.351 40.000 0.00 0.00 0.00 3.95
2887 2991 6.677431 GCTGTTCATTCTAGCAAATCTCAAGG 60.677 42.308 0.00 0.00 37.40 3.61
2888 2992 6.128090 TGCTGTTCATTCTAGCAAATCTCAAG 60.128 38.462 0.00 0.00 43.77 3.02
2889 2993 5.706833 TGCTGTTCATTCTAGCAAATCTCAA 59.293 36.000 0.00 0.00 43.77 3.02
2890 2994 5.247862 TGCTGTTCATTCTAGCAAATCTCA 58.752 37.500 0.00 0.00 43.77 3.27
2891 2995 5.808042 TGCTGTTCATTCTAGCAAATCTC 57.192 39.130 0.00 0.00 43.77 2.75
2897 3001 3.503363 CCAACTTGCTGTTCATTCTAGCA 59.497 43.478 0.00 0.00 44.92 3.49
2898 3002 3.753272 TCCAACTTGCTGTTCATTCTAGC 59.247 43.478 0.00 0.00 36.63 3.42
2899 3003 4.999950 ACTCCAACTTGCTGTTCATTCTAG 59.000 41.667 0.00 0.00 36.63 2.43
2900 3004 4.973168 ACTCCAACTTGCTGTTCATTCTA 58.027 39.130 0.00 0.00 36.63 2.10
2901 3005 3.825328 ACTCCAACTTGCTGTTCATTCT 58.175 40.909 0.00 0.00 36.63 2.40
2902 3006 5.689383 TTACTCCAACTTGCTGTTCATTC 57.311 39.130 0.00 0.00 36.63 2.67
2903 3007 5.769662 TCATTACTCCAACTTGCTGTTCATT 59.230 36.000 0.00 0.00 36.63 2.57
2904 3008 5.316167 TCATTACTCCAACTTGCTGTTCAT 58.684 37.500 0.00 0.00 36.63 2.57
2905 3009 4.713553 TCATTACTCCAACTTGCTGTTCA 58.286 39.130 0.00 0.00 36.63 3.18
2906 3010 4.997395 TCTCATTACTCCAACTTGCTGTTC 59.003 41.667 0.00 0.00 36.63 3.18
2907 3011 4.973168 TCTCATTACTCCAACTTGCTGTT 58.027 39.130 0.00 0.00 39.92 3.16
2908 3012 4.284490 TCTCTCATTACTCCAACTTGCTGT 59.716 41.667 0.00 0.00 0.00 4.40
2909 3013 4.825422 TCTCTCATTACTCCAACTTGCTG 58.175 43.478 0.00 0.00 0.00 4.41
2910 3014 5.489792 TTCTCTCATTACTCCAACTTGCT 57.510 39.130 0.00 0.00 0.00 3.91
2911 3015 6.560253 TTTTCTCTCATTACTCCAACTTGC 57.440 37.500 0.00 0.00 0.00 4.01
2944 3048 8.656806 CCCACTATTATGTGAAGTTAGGGATTA 58.343 37.037 0.00 0.00 40.12 1.75
2945 3049 7.128883 ACCCACTATTATGTGAAGTTAGGGATT 59.871 37.037 0.00 0.00 40.12 3.01
2946 3050 6.619852 ACCCACTATTATGTGAAGTTAGGGAT 59.380 38.462 0.00 0.00 40.12 3.85
2947 3051 5.968167 ACCCACTATTATGTGAAGTTAGGGA 59.032 40.000 0.00 0.00 40.12 4.20
2948 3052 6.055588 CACCCACTATTATGTGAAGTTAGGG 58.944 44.000 0.00 0.00 40.12 3.53
2949 3053 6.884832 TCACCCACTATTATGTGAAGTTAGG 58.115 40.000 0.00 0.00 40.12 2.69
2950 3054 7.782049 TCTCACCCACTATTATGTGAAGTTAG 58.218 38.462 0.00 0.00 40.12 2.34
2951 3055 7.727578 TCTCACCCACTATTATGTGAAGTTA 57.272 36.000 0.00 0.00 40.12 2.24
2952 3056 6.620877 TCTCACCCACTATTATGTGAAGTT 57.379 37.500 0.00 0.00 40.12 2.66
2953 3057 6.408548 CCATCTCACCCACTATTATGTGAAGT 60.409 42.308 0.00 0.00 40.12 3.01
2954 3058 5.994054 CCATCTCACCCACTATTATGTGAAG 59.006 44.000 0.00 0.00 40.12 3.02
2955 3059 5.665360 TCCATCTCACCCACTATTATGTGAA 59.335 40.000 0.00 0.00 40.12 3.18
2956 3060 5.215845 TCCATCTCACCCACTATTATGTGA 58.784 41.667 0.00 0.00 40.12 3.58
2957 3061 5.551305 TCCATCTCACCCACTATTATGTG 57.449 43.478 0.00 0.00 37.66 3.21
2958 3062 6.575244 TTTCCATCTCACCCACTATTATGT 57.425 37.500 0.00 0.00 0.00 2.29
2959 3063 6.828273 TGTTTTCCATCTCACCCACTATTATG 59.172 38.462 0.00 0.00 0.00 1.90
2960 3064 6.969043 TGTTTTCCATCTCACCCACTATTAT 58.031 36.000 0.00 0.00 0.00 1.28
2961 3065 6.381498 TGTTTTCCATCTCACCCACTATTA 57.619 37.500 0.00 0.00 0.00 0.98
2962 3066 5.255397 TGTTTTCCATCTCACCCACTATT 57.745 39.130 0.00 0.00 0.00 1.73
2963 3067 4.927267 TGTTTTCCATCTCACCCACTAT 57.073 40.909 0.00 0.00 0.00 2.12
2964 3068 4.715534 TTGTTTTCCATCTCACCCACTA 57.284 40.909 0.00 0.00 0.00 2.74
2965 3069 3.593442 TTGTTTTCCATCTCACCCACT 57.407 42.857 0.00 0.00 0.00 4.00
2966 3070 3.243737 GGTTTGTTTTCCATCTCACCCAC 60.244 47.826 0.00 0.00 0.00 4.61
2967 3071 2.962421 GGTTTGTTTTCCATCTCACCCA 59.038 45.455 0.00 0.00 0.00 4.51
2968 3072 3.230976 AGGTTTGTTTTCCATCTCACCC 58.769 45.455 0.00 0.00 0.00 4.61
2969 3073 4.825085 TGTAGGTTTGTTTTCCATCTCACC 59.175 41.667 0.00 0.00 0.00 4.02
2970 3074 5.298276 TGTGTAGGTTTGTTTTCCATCTCAC 59.702 40.000 0.00 0.00 0.00 3.51
2971 3075 5.441500 TGTGTAGGTTTGTTTTCCATCTCA 58.558 37.500 0.00 0.00 0.00 3.27
2972 3076 5.562890 GCTGTGTAGGTTTGTTTTCCATCTC 60.563 44.000 0.00 0.00 0.00 2.75
2973 3077 4.278419 GCTGTGTAGGTTTGTTTTCCATCT 59.722 41.667 0.00 0.00 0.00 2.90
2974 3078 4.037446 TGCTGTGTAGGTTTGTTTTCCATC 59.963 41.667 0.00 0.00 0.00 3.51
2975 3079 3.957497 TGCTGTGTAGGTTTGTTTTCCAT 59.043 39.130 0.00 0.00 0.00 3.41
2976 3080 3.357203 TGCTGTGTAGGTTTGTTTTCCA 58.643 40.909 0.00 0.00 0.00 3.53
2977 3081 4.037446 TGATGCTGTGTAGGTTTGTTTTCC 59.963 41.667 0.00 0.00 0.00 3.13
2978 3082 5.181690 TGATGCTGTGTAGGTTTGTTTTC 57.818 39.130 0.00 0.00 0.00 2.29
2979 3083 5.348164 GTTGATGCTGTGTAGGTTTGTTTT 58.652 37.500 0.00 0.00 0.00 2.43
2980 3084 4.497340 CGTTGATGCTGTGTAGGTTTGTTT 60.497 41.667 0.00 0.00 0.00 2.83
2981 3085 3.003275 CGTTGATGCTGTGTAGGTTTGTT 59.997 43.478 0.00 0.00 0.00 2.83
2982 3086 2.548057 CGTTGATGCTGTGTAGGTTTGT 59.452 45.455 0.00 0.00 0.00 2.83
2983 3087 2.805671 TCGTTGATGCTGTGTAGGTTTG 59.194 45.455 0.00 0.00 0.00 2.93
2984 3088 2.806244 GTCGTTGATGCTGTGTAGGTTT 59.194 45.455 0.00 0.00 0.00 3.27
2985 3089 2.037251 AGTCGTTGATGCTGTGTAGGTT 59.963 45.455 0.00 0.00 0.00 3.50
2986 3090 1.618837 AGTCGTTGATGCTGTGTAGGT 59.381 47.619 0.00 0.00 0.00 3.08
2987 3091 2.370281 AGTCGTTGATGCTGTGTAGG 57.630 50.000 0.00 0.00 0.00 3.18
2988 3092 5.627802 GATTAGTCGTTGATGCTGTGTAG 57.372 43.478 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.