Multiple sequence alignment - TraesCS4B01G003100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G003100 chr4B 100.000 5853 0 0 1 5853 1780032 1785884 0.000000e+00 10809.0
1 TraesCS4B01G003100 chr4D 91.856 4322 219 56 234 4473 1375049 1370779 0.000000e+00 5908.0
2 TraesCS4B01G003100 chr4D 93.718 589 22 8 4493 5075 1370714 1370135 0.000000e+00 869.0
3 TraesCS4B01G003100 chr4D 89.831 177 13 5 58 230 1375348 1375173 7.630000e-54 222.0
4 TraesCS4B01G003100 chr4D 88.827 179 6 3 5177 5355 1370138 1369974 2.140000e-49 207.0
5 TraesCS4B01G003100 chr4A 89.650 2947 157 66 777 3654 603455666 603452799 0.000000e+00 3616.0
6 TraesCS4B01G003100 chr4A 92.178 652 40 9 3829 4473 603452622 603451975 0.000000e+00 911.0
7 TraesCS4B01G003100 chr4A 93.750 592 17 8 4491 5075 603451871 603451293 0.000000e+00 870.0
8 TraesCS4B01G003100 chr4A 85.897 468 41 13 5177 5637 603451296 603450847 5.310000e-130 475.0
9 TraesCS4B01G003100 chr4A 86.047 344 37 9 454 794 603456058 603455723 5.580000e-95 359.0
10 TraesCS4B01G003100 chr4A 90.000 230 16 6 1 226 603456584 603456358 2.060000e-74 291.0
11 TraesCS4B01G003100 chr4A 93.548 124 6 1 5071 5192 655433730 655433853 3.600000e-42 183.0
12 TraesCS4B01G003100 chr4A 100.000 29 0 0 3776 3804 603452656 603452628 3.000000e-03 54.7
13 TraesCS4B01G003100 chr3D 88.037 326 18 8 1183 1493 581540951 581540632 3.330000e-97 366.0
14 TraesCS4B01G003100 chr3D 93.651 126 6 2 5060 5184 551006393 551006269 2.780000e-43 187.0
15 TraesCS4B01G003100 chr3D 92.941 85 5 1 945 1028 581541045 581540961 7.970000e-24 122.0
16 TraesCS4B01G003100 chr5B 96.396 111 4 0 5073 5183 394273072 394272962 3.600000e-42 183.0
17 TraesCS4B01G003100 chr2B 95.652 115 4 1 5074 5188 171459975 171460088 3.600000e-42 183.0
18 TraesCS4B01G003100 chr6D 94.068 118 7 0 5071 5188 457694100 457693983 4.660000e-41 180.0
19 TraesCS4B01G003100 chr6D 84.545 110 17 0 4732 4841 464833161 464833052 6.200000e-20 110.0
20 TraesCS4B01G003100 chr6A 94.118 119 6 1 5068 5185 158088030 158087912 4.660000e-41 180.0
21 TraesCS4B01G003100 chr6A 85.470 117 16 1 4726 4841 611410797 611410681 2.860000e-23 121.0
22 TraesCS4B01G003100 chr3B 93.388 121 8 0 5060 5180 454671369 454671489 4.660000e-41 180.0
23 TraesCS4B01G003100 chr3B 94.068 118 7 0 5074 5191 779534329 779534212 4.660000e-41 180.0
24 TraesCS4B01G003100 chr3B 90.299 134 7 6 5053 5185 577429190 577429318 2.800000e-38 171.0
25 TraesCS4B01G003100 chr1B 94.681 94 3 1 4771 4864 500627978 500628069 1.700000e-30 145.0
26 TraesCS4B01G003100 chr6B 85.455 110 16 0 4732 4841 708781604 708781495 1.330000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G003100 chr4B 1780032 1785884 5852 False 10809.000000 10809 100.000000 1 5853 1 chr4B.!!$F1 5852
1 TraesCS4B01G003100 chr4D 1369974 1375348 5374 True 1801.500000 5908 91.058000 58 5355 4 chr4D.!!$R1 5297
2 TraesCS4B01G003100 chr4A 603450847 603456584 5737 True 939.528571 3616 91.074571 1 5637 7 chr4A.!!$R1 5636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
935 1202 0.033504 TGACTTGCTTCGACTCCACC 59.966 55.000 0.00 0.0 0.00 4.61 F
936 1203 0.318762 GACTTGCTTCGACTCCACCT 59.681 55.000 0.00 0.0 0.00 4.00 F
937 1204 0.318762 ACTTGCTTCGACTCCACCTC 59.681 55.000 0.00 0.0 0.00 3.85 F
1703 2007 1.078567 CCTCAGGTCAGCAAGCTCC 60.079 63.158 0.00 0.0 31.91 4.70 F
2907 3263 1.293963 CGTGATGAGTGGCACAGTGG 61.294 60.000 21.41 0.0 45.14 4.00 F
3417 3780 0.525668 GCGATGACGACGAGGAACAT 60.526 55.000 0.00 0.0 42.66 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 2129 0.025001 CCGACAATGACGCGTCAATC 59.975 55.000 41.74 33.69 43.58 2.67 R
2458 2814 1.404391 CCTGTTGCTGCATCTCCAATC 59.596 52.381 1.84 0.00 0.00 2.67 R
2848 3204 1.608717 CCTCCCTGTTCCACTCTCCG 61.609 65.000 0.00 0.00 0.00 4.63 R
3126 3489 0.035881 TTGGTGCTGAGCTCCTCTTG 59.964 55.000 24.05 0.00 42.02 3.02 R
3759 4199 0.173708 CTAAGTCTCAGTCCCCGCAC 59.826 60.000 0.00 0.00 0.00 5.34 R
5366 5917 0.663568 GCGCGCTTATAGGACGATGT 60.664 55.000 26.67 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 4.141688 GGAAAACGATACTCCCTCCAATCT 60.142 45.833 0.00 0.00 0.00 2.40
35 37 4.585162 ACGATACTCCCTCCAATCTACAAG 59.415 45.833 0.00 0.00 0.00 3.16
39 41 4.695606 ACTCCCTCCAATCTACAAGGTTA 58.304 43.478 0.00 0.00 0.00 2.85
42 44 6.326843 ACTCCCTCCAATCTACAAGGTTATAC 59.673 42.308 0.00 0.00 0.00 1.47
46 48 8.368668 CCCTCCAATCTACAAGGTTATACTAAG 58.631 40.741 0.00 0.00 0.00 2.18
47 49 8.925338 CCTCCAATCTACAAGGTTATACTAAGT 58.075 37.037 0.00 0.00 0.00 2.24
50 52 9.751542 CCAATCTACAAGGTTATACTAAGTCTG 57.248 37.037 0.00 0.00 0.00 3.51
60 62 6.911511 GGTTATACTAAGTCTGCGACAAGTAG 59.088 42.308 18.67 14.50 37.02 2.57
111 115 6.152661 TGCAACATTTAAGTTTCCCTCCATAG 59.847 38.462 0.00 0.00 0.00 2.23
221 228 3.938963 GCCATTCTCAAACTAATGACCGA 59.061 43.478 0.00 0.00 35.53 4.69
226 233 2.276201 TCAAACTAATGACCGATGGCG 58.724 47.619 0.00 0.00 37.24 5.69
230 237 1.068127 ACTAATGACCGATGGCGTACC 59.932 52.381 0.00 0.00 35.23 3.34
232 239 0.539986 AATGACCGATGGCGTACCTT 59.460 50.000 0.00 0.00 36.63 3.50
233 240 0.539986 ATGACCGATGGCGTACCTTT 59.460 50.000 0.00 0.00 36.63 3.11
234 241 0.322322 TGACCGATGGCGTACCTTTT 59.678 50.000 0.00 0.00 36.63 2.27
264 392 3.307762 GGTCAGAATAGTTCTTGCCCACT 60.308 47.826 0.00 0.00 38.11 4.00
276 404 1.803334 TGCCCACTGATGACGTAAAC 58.197 50.000 0.00 0.00 0.00 2.01
284 412 4.909305 CACTGATGACGTAAACGCAATTTT 59.091 37.500 1.74 0.00 44.43 1.82
288 416 7.806014 ACTGATGACGTAAACGCAATTTTAAAT 59.194 29.630 1.74 0.00 44.43 1.40
290 418 9.268255 TGATGACGTAAACGCAATTTTAAATAG 57.732 29.630 1.74 0.00 44.43 1.73
296 424 9.391794 CGTAAACGCAATTTTAAATAGAAATGC 57.608 29.630 2.29 2.29 0.00 3.56
320 448 0.743345 TGATACAGCAGCAGCAGCAG 60.743 55.000 12.92 6.60 45.49 4.24
373 529 6.757026 ACAACAACAACAACAACAAAGTAC 57.243 33.333 0.00 0.00 0.00 2.73
412 568 8.748582 TCGTTATACATTGAATGATCAACGTAC 58.251 33.333 25.52 10.32 44.26 3.67
437 593 3.419943 TGCACATGGATGCTTTGAACTA 58.580 40.909 9.44 0.00 46.28 2.24
439 595 5.192176 TGCACATGGATGCTTTGAACTATA 58.808 37.500 9.44 0.00 46.28 1.31
489 672 3.004752 GGCCATGAGGTCTACAAACAT 57.995 47.619 0.00 0.00 36.28 2.71
490 673 2.684881 GGCCATGAGGTCTACAAACATG 59.315 50.000 0.00 0.00 36.28 3.21
515 698 9.399797 TGTCATATTTTCATCTTCTTATGTGCT 57.600 29.630 0.00 0.00 0.00 4.40
520 703 5.378230 TTCATCTTCTTATGTGCTGGGAT 57.622 39.130 0.00 0.00 0.00 3.85
538 721 0.923358 ATCCGGCCATGGGTAGAAAA 59.077 50.000 15.13 0.00 0.00 2.29
610 799 1.379309 GCATTTTGTAGCCGGGGGA 60.379 57.895 2.18 0.00 0.00 4.81
624 813 2.141448 GGGGAGCTACCTACCAGGC 61.141 68.421 16.60 0.00 44.68 4.85
650 839 2.133281 TCGAGTAATCGGTCCCTTCA 57.867 50.000 13.19 0.00 0.00 3.02
664 853 1.328680 CCCTTCATCGCAATCTTGTCG 59.671 52.381 0.00 0.00 0.00 4.35
665 854 2.270923 CCTTCATCGCAATCTTGTCGA 58.729 47.619 10.31 10.31 39.56 4.20
666 855 2.868583 CCTTCATCGCAATCTTGTCGAT 59.131 45.455 12.96 12.96 43.11 3.59
683 872 3.935203 GTCGATGAAGATGTCAATGTGGT 59.065 43.478 0.00 0.00 40.50 4.16
684 873 3.934579 TCGATGAAGATGTCAATGTGGTG 59.065 43.478 0.00 0.00 40.50 4.17
685 874 3.064408 CGATGAAGATGTCAATGTGGTGG 59.936 47.826 0.00 0.00 40.50 4.61
689 878 5.281533 TGAAGATGTCAATGTGGTGGACAC 61.282 45.833 0.00 0.00 43.58 3.67
704 893 4.394729 GTGGACACCCAGAGAAAACAATA 58.605 43.478 0.00 0.00 44.55 1.90
729 918 2.346099 ATTTTGTTTCCGCGGACATG 57.654 45.000 31.19 0.00 0.00 3.21
799 1062 7.295201 CACATTGCCATTTCTTTTGAATGAAG 58.705 34.615 0.00 0.00 38.37 3.02
811 1074 9.221933 TTCTTTTGAATGAAGCATTATTGCATT 57.778 25.926 11.88 3.38 41.54 3.56
826 1089 7.921786 TTATTGCATTGCATATACTCCTACC 57.078 36.000 12.95 0.00 38.76 3.18
827 1090 4.972751 TGCATTGCATATACTCCTACCA 57.027 40.909 7.38 0.00 31.71 3.25
828 1091 5.303259 TGCATTGCATATACTCCTACCAA 57.697 39.130 7.38 0.00 31.71 3.67
846 1109 7.466746 CTACCAAGGAAGGAAATGAAATGAA 57.533 36.000 0.00 0.00 0.00 2.57
847 1110 6.745794 ACCAAGGAAGGAAATGAAATGAAA 57.254 33.333 0.00 0.00 0.00 2.69
848 1111 7.135591 ACCAAGGAAGGAAATGAAATGAAAA 57.864 32.000 0.00 0.00 0.00 2.29
849 1112 7.572814 ACCAAGGAAGGAAATGAAATGAAAAA 58.427 30.769 0.00 0.00 0.00 1.94
850 1113 7.716560 ACCAAGGAAGGAAATGAAATGAAAAAG 59.283 33.333 0.00 0.00 0.00 2.27
851 1114 7.173735 CCAAGGAAGGAAATGAAATGAAAAAGG 59.826 37.037 0.00 0.00 0.00 3.11
881 1144 4.470602 AGGGGAGAAAAATCGTGTCTTTT 58.529 39.130 0.00 0.00 0.00 2.27
883 1146 4.037565 GGGGAGAAAAATCGTGTCTTTTGT 59.962 41.667 0.00 0.00 0.00 2.83
884 1147 4.976116 GGGAGAAAAATCGTGTCTTTTGTG 59.024 41.667 0.00 0.00 0.00 3.33
885 1148 4.441087 GGAGAAAAATCGTGTCTTTTGTGC 59.559 41.667 0.00 0.00 0.00 4.57
887 1150 5.036737 AGAAAAATCGTGTCTTTTGTGCAG 58.963 37.500 0.00 0.00 0.00 4.41
891 1154 0.040958 CGTGTCTTTTGTGCAGCTCC 60.041 55.000 0.00 0.00 0.00 4.70
892 1155 0.040958 GTGTCTTTTGTGCAGCTCCG 60.041 55.000 0.00 0.00 0.00 4.63
897 1160 2.933878 TTTTGTGCAGCTCCGTCCGT 62.934 55.000 0.00 0.00 0.00 4.69
912 1175 1.605232 GTCCGTCCAACCAAAATCGTT 59.395 47.619 0.00 0.00 0.00 3.85
913 1176 1.604755 TCCGTCCAACCAAAATCGTTG 59.395 47.619 0.00 0.00 40.25 4.10
931 1198 1.502231 TGCTTGACTTGCTTCGACTC 58.498 50.000 0.00 0.00 0.00 3.36
932 1199 0.793250 GCTTGACTTGCTTCGACTCC 59.207 55.000 0.00 0.00 0.00 3.85
933 1200 1.873903 GCTTGACTTGCTTCGACTCCA 60.874 52.381 0.00 0.00 0.00 3.86
934 1201 1.795286 CTTGACTTGCTTCGACTCCAC 59.205 52.381 0.00 0.00 0.00 4.02
935 1202 0.033504 TGACTTGCTTCGACTCCACC 59.966 55.000 0.00 0.00 0.00 4.61
936 1203 0.318762 GACTTGCTTCGACTCCACCT 59.681 55.000 0.00 0.00 0.00 4.00
937 1204 0.318762 ACTTGCTTCGACTCCACCTC 59.681 55.000 0.00 0.00 0.00 3.85
1269 1542 3.450115 CTCGTCCGGGACTGGGTC 61.450 72.222 23.86 0.00 0.00 4.46
1564 1868 7.166167 TCTTACTAGAGATTTTTCCAACCACC 58.834 38.462 0.00 0.00 0.00 4.61
1565 1869 5.319043 ACTAGAGATTTTTCCAACCACCA 57.681 39.130 0.00 0.00 0.00 4.17
1566 1870 5.892348 ACTAGAGATTTTTCCAACCACCAT 58.108 37.500 0.00 0.00 0.00 3.55
1703 2007 1.078567 CCTCAGGTCAGCAAGCTCC 60.079 63.158 0.00 0.00 31.91 4.70
1705 2009 1.537397 TCAGGTCAGCAAGCTCCCT 60.537 57.895 4.41 4.41 31.91 4.20
1748 2058 2.880890 CTGCCCATGCTTAGTGGATAAC 59.119 50.000 0.00 0.00 39.12 1.89
1805 2115 7.864379 AGGATTTATGCAAGCGAAATTATTGAG 59.136 33.333 0.00 0.00 0.00 3.02
1819 2129 9.329913 CGAAATTATTGAGTTTTTGGACTACTG 57.670 33.333 0.00 0.00 0.00 2.74
1825 2135 6.861065 TGAGTTTTTGGACTACTGATTGAC 57.139 37.500 0.00 0.00 0.00 3.18
1827 2137 4.213482 AGTTTTTGGACTACTGATTGACGC 59.787 41.667 0.00 0.00 0.00 5.19
1939 2252 6.255887 GTGGTTAGTTGTACTGATGCTGATAC 59.744 42.308 0.00 0.00 0.00 2.24
1968 2281 5.049680 ACAGTTCGATCATTTTGTTTACGCT 60.050 36.000 0.00 0.00 0.00 5.07
1971 2284 3.061563 TCGATCATTTTGTTTACGCTCCG 59.938 43.478 0.00 0.00 0.00 4.63
1985 2298 3.527533 ACGCTCCGTTTTGCTGATATTA 58.472 40.909 0.00 0.00 36.35 0.98
2060 2381 7.537596 AATGAATGACAAGGTTCCAATAACA 57.462 32.000 0.00 0.00 0.00 2.41
2124 2451 6.934083 ACTCACAAATTTTGTTTTTGTCCTGT 59.066 30.769 12.02 0.00 43.51 4.00
2141 2482 5.943416 TGTCCTGTTTCATAATGGTTACCTG 59.057 40.000 2.07 0.00 0.00 4.00
2142 2483 5.357032 GTCCTGTTTCATAATGGTTACCTGG 59.643 44.000 2.07 0.00 0.00 4.45
2154 2495 7.931015 AATGGTTACCTGGAGATACAATCTA 57.069 36.000 0.00 0.00 40.38 1.98
2164 2505 7.041508 CCTGGAGATACAATCTAAATGAAGTGC 60.042 40.741 0.00 0.00 40.38 4.40
2167 2508 7.239166 AGATACAATCTAAATGAAGTGCGTG 57.761 36.000 0.00 0.00 38.00 5.34
2208 2550 8.201554 TGAAGTGAAATGCTGTAATCTCATAC 57.798 34.615 0.00 0.00 0.00 2.39
2458 2814 2.285220 CGATAATGTTGGTCTTCAGCGG 59.715 50.000 0.00 0.00 0.00 5.52
2503 2859 3.058432 CAGATTATGGAAGCAATGCTCCG 60.058 47.826 8.71 0.00 38.25 4.63
2623 2979 5.084519 TCCCATGCTATTACTACTACTGGG 58.915 45.833 0.00 0.00 41.77 4.45
2626 2982 5.542635 CCATGCTATTACTACTACTGGGGAA 59.457 44.000 0.00 0.00 0.00 3.97
2634 2990 3.532232 ACTACTACTGGGGAAGGATCTGA 59.468 47.826 0.00 0.00 0.00 3.27
2635 2991 3.491766 ACTACTGGGGAAGGATCTGAA 57.508 47.619 0.00 0.00 0.00 3.02
2746 3102 4.008074 TCTGGAAACAAGTGATGAGTCC 57.992 45.455 0.00 0.00 42.06 3.85
2845 3201 4.581824 GGCAATAATCATCTCCAAGAAGCA 59.418 41.667 0.00 0.00 0.00 3.91
2848 3204 1.661341 ATCATCTCCAAGAAGCACGC 58.339 50.000 0.00 0.00 0.00 5.34
2907 3263 1.293963 CGTGATGAGTGGCACAGTGG 61.294 60.000 21.41 0.00 45.14 4.00
2941 3297 4.460382 CCAGAAGTAAATGAAGTGTGGCAT 59.540 41.667 0.00 0.00 0.00 4.40
3067 3423 3.133691 CCCTGGTGATGACGATAATGTG 58.866 50.000 0.00 0.00 0.00 3.21
3123 3486 9.208022 CAGGTTTTTCTTTCTTTTCTTTCTTGT 57.792 29.630 0.00 0.00 0.00 3.16
3132 3495 7.568199 TTCTTTTCTTTCTTGTACCAAGAGG 57.432 36.000 6.76 5.19 42.21 3.69
3166 3529 8.612619 CACCAAAAGCGACTTATTATTCAGTAT 58.387 33.333 0.00 0.00 0.00 2.12
3174 3537 8.835160 GCGACTTATTATTCAGTATGTACGTAC 58.165 37.037 18.90 18.90 37.40 3.67
3228 3591 6.240894 TGTTCAATAATTCTGCAGAAGGAGT 58.759 36.000 31.14 18.93 37.48 3.85
3399 3762 1.313812 AAGAAGAGCAGCAGCATGGC 61.314 55.000 3.17 0.00 45.49 4.40
3417 3780 0.525668 GCGATGACGACGAGGAACAT 60.526 55.000 0.00 0.00 42.66 2.71
3440 3803 1.802960 ACTTCTTCGTGATGCTGCAAG 59.197 47.619 6.36 0.00 0.00 4.01
3668 4094 4.572007 GGGGAAGTTCCAACTATCCCAAAT 60.572 45.833 23.33 0.79 46.65 2.32
3753 4193 5.759059 ACTTGGGCAGAGATAAATGATTGA 58.241 37.500 0.00 0.00 0.00 2.57
3759 4199 6.427547 GGGCAGAGATAAATGATTGAGAGAAG 59.572 42.308 0.00 0.00 0.00 2.85
4009 4452 4.047125 CCTTGGATGCGGGTGGGT 62.047 66.667 0.00 0.00 0.00 4.51
4016 4459 3.925630 ATGCGGGTGGGTGAGCTTG 62.926 63.158 0.00 0.00 0.00 4.01
4024 4467 1.077501 GGGTGAGCTTGCAGGCATA 60.078 57.895 23.85 8.28 34.17 3.14
4039 4482 1.742146 CATACGCTCTAGCCAGCCA 59.258 57.895 0.00 0.00 35.84 4.75
4060 4503 0.948678 GCACCGCTTGGTTCTTGTTA 59.051 50.000 0.00 0.00 46.51 2.41
4131 4574 6.151817 ACTTCCCTTCTTTGTAAGATTGATGC 59.848 38.462 0.00 0.00 37.38 3.91
4204 4648 9.807649 AAAGCTAAAGGCATATAATGTTTCTTG 57.192 29.630 0.00 0.00 44.79 3.02
4237 4681 2.373169 TGCAGGAATGGGAGGCTATTAG 59.627 50.000 0.00 0.00 0.00 1.73
4376 4820 0.734889 CGGCCTTGAATCGCTTCATT 59.265 50.000 2.02 0.00 40.95 2.57
4421 4875 5.104109 CCTGTTTTCCTTATGGTGGATCCTA 60.104 44.000 14.23 0.00 37.07 2.94
4432 4886 9.167311 CTTATGGTGGATCCTATGCTAATTTAC 57.833 37.037 14.23 0.00 37.07 2.01
4433 4887 6.763715 TGGTGGATCCTATGCTAATTTACT 57.236 37.500 14.23 0.00 37.07 2.24
4434 4888 7.865530 TGGTGGATCCTATGCTAATTTACTA 57.134 36.000 14.23 0.00 37.07 1.82
4435 4889 8.270137 TGGTGGATCCTATGCTAATTTACTAA 57.730 34.615 14.23 0.00 37.07 2.24
4436 4890 8.890472 TGGTGGATCCTATGCTAATTTACTAAT 58.110 33.333 14.23 0.00 37.07 1.73
4437 4891 9.740710 GGTGGATCCTATGCTAATTTACTAATT 57.259 33.333 14.23 0.00 37.68 1.40
4473 4927 2.439701 CTGGGCATGCTGGGTCTG 60.440 66.667 18.92 3.33 0.00 3.51
4474 4928 4.746309 TGGGCATGCTGGGTCTGC 62.746 66.667 18.92 0.00 35.16 4.26
4475 4929 4.437587 GGGCATGCTGGGTCTGCT 62.438 66.667 18.92 0.00 36.18 4.24
4479 4933 1.654954 GCATGCTGGGTCTGCTCTTG 61.655 60.000 11.37 0.00 33.15 3.02
4480 4934 0.322277 CATGCTGGGTCTGCTCTTGT 60.322 55.000 0.00 0.00 0.00 3.16
4482 4936 0.321671 TGCTGGGTCTGCTCTTGTAC 59.678 55.000 0.00 0.00 0.00 2.90
4483 4937 0.610687 GCTGGGTCTGCTCTTGTACT 59.389 55.000 0.00 0.00 0.00 2.73
4484 4938 1.002544 GCTGGGTCTGCTCTTGTACTT 59.997 52.381 0.00 0.00 0.00 2.24
4487 4941 4.802918 GCTGGGTCTGCTCTTGTACTTAAA 60.803 45.833 0.00 0.00 0.00 1.52
4488 4942 4.638304 TGGGTCTGCTCTTGTACTTAAAC 58.362 43.478 0.00 0.00 0.00 2.01
4489 4943 3.678548 GGGTCTGCTCTTGTACTTAAACG 59.321 47.826 0.00 0.00 0.00 3.60
4517 5057 0.179084 ACCCTGAATGCCGATGTACG 60.179 55.000 0.00 0.00 42.18 3.67
4653 5193 8.664669 ACAGGTTGGTTTTCTATCCATTATTT 57.335 30.769 0.00 0.00 33.50 1.40
4669 5210 2.243602 ATTTTTGGGTGCAAGCTGTG 57.756 45.000 0.00 0.00 0.00 3.66
4675 5216 1.363807 GGTGCAAGCTGTGGAAACC 59.636 57.895 0.00 0.00 0.00 3.27
4684 5225 3.624777 AGCTGTGGAAACCTATGATTGG 58.375 45.455 0.00 0.00 0.00 3.16
4685 5226 3.010584 AGCTGTGGAAACCTATGATTGGT 59.989 43.478 0.00 0.00 39.91 3.67
4891 5433 6.492087 AGAATATACGAGGAGGAAAGGAAGAG 59.508 42.308 0.00 0.00 0.00 2.85
4969 5514 9.614792 ATGATATGATGATGATGATTGTTCGAT 57.385 29.630 0.00 0.00 0.00 3.59
5043 5592 1.751563 TGGTCTCGCCAATGTGTCA 59.248 52.632 0.00 0.00 45.94 3.58
5075 5625 5.299782 CCCTCCTCTGATGTAGTGTAAGTAC 59.700 48.000 0.00 0.00 43.11 2.73
5076 5626 6.123651 CCTCCTCTGATGTAGTGTAAGTACT 58.876 44.000 0.00 0.00 43.21 2.73
5077 5627 6.261381 CCTCCTCTGATGTAGTGTAAGTACTC 59.739 46.154 0.00 0.00 43.21 2.59
5078 5628 6.120905 TCCTCTGATGTAGTGTAAGTACTCC 58.879 44.000 0.00 0.00 43.21 3.85
5079 5629 5.299782 CCTCTGATGTAGTGTAAGTACTCCC 59.700 48.000 0.00 0.00 43.21 4.30
5080 5630 6.075949 TCTGATGTAGTGTAAGTACTCCCT 57.924 41.667 0.00 0.00 43.21 4.20
5081 5631 6.120905 TCTGATGTAGTGTAAGTACTCCCTC 58.879 44.000 0.00 0.00 43.21 4.30
5082 5632 5.198965 TGATGTAGTGTAAGTACTCCCTCC 58.801 45.833 0.00 0.00 43.21 4.30
5083 5633 3.614092 TGTAGTGTAAGTACTCCCTCCG 58.386 50.000 0.00 0.00 43.21 4.63
5084 5634 2.895242 AGTGTAAGTACTCCCTCCGT 57.105 50.000 0.00 0.00 0.00 4.69
5085 5635 3.166560 AGTGTAAGTACTCCCTCCGTT 57.833 47.619 0.00 0.00 0.00 4.44
5086 5636 3.087781 AGTGTAAGTACTCCCTCCGTTC 58.912 50.000 0.00 0.00 0.00 3.95
5087 5637 2.086869 TGTAAGTACTCCCTCCGTTCG 58.913 52.381 0.00 0.00 0.00 3.95
5088 5638 1.403323 GTAAGTACTCCCTCCGTTCGG 59.597 57.143 4.74 4.74 0.00 4.30
5089 5639 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
5090 5640 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
5091 5641 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
5092 5642 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
5093 5643 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
5094 5644 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
5095 5645 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
5096 5646 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
5097 5647 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
5098 5648 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
5099 5649 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
5100 5650 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
5101 5651 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
5102 5652 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
5103 5653 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
5104 5654 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
5105 5655 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
5106 5656 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
5107 5657 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
5108 5658 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
5109 5659 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
5110 5660 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
5111 5661 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
5112 5662 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
5113 5663 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
5114 5664 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
5115 5665 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
5116 5666 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
5117 5667 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
5118 5668 4.122046 TGTCGCAGAAATGGATGTATCTG 58.878 43.478 0.00 0.00 39.69 2.90
5119 5669 3.496130 GTCGCAGAAATGGATGTATCTGG 59.504 47.826 4.06 0.00 39.69 3.86
5120 5670 3.387699 TCGCAGAAATGGATGTATCTGGA 59.612 43.478 4.06 0.00 39.69 3.86
5121 5671 3.496130 CGCAGAAATGGATGTATCTGGAC 59.504 47.826 4.06 0.00 39.69 4.02
5122 5672 3.496130 GCAGAAATGGATGTATCTGGACG 59.504 47.826 4.06 0.00 39.69 4.79
5123 5673 4.697514 CAGAAATGGATGTATCTGGACGT 58.302 43.478 0.00 0.00 36.50 4.34
5124 5674 5.739070 GCAGAAATGGATGTATCTGGACGTA 60.739 44.000 0.00 0.00 39.69 3.57
5125 5675 6.459066 CAGAAATGGATGTATCTGGACGTAT 58.541 40.000 0.00 0.00 36.50 3.06
5126 5676 6.931281 CAGAAATGGATGTATCTGGACGTATT 59.069 38.462 0.00 0.00 36.50 1.89
5127 5677 7.442364 CAGAAATGGATGTATCTGGACGTATTT 59.558 37.037 0.00 0.00 36.50 1.40
5128 5678 7.993183 AGAAATGGATGTATCTGGACGTATTTT 59.007 33.333 0.00 0.00 0.00 1.82
5129 5679 9.268268 GAAATGGATGTATCTGGACGTATTTTA 57.732 33.333 0.00 0.00 0.00 1.52
5130 5680 8.833231 AATGGATGTATCTGGACGTATTTTAG 57.167 34.615 0.00 0.00 0.00 1.85
5131 5681 7.356089 TGGATGTATCTGGACGTATTTTAGT 57.644 36.000 0.00 0.00 0.00 2.24
5132 5682 7.788026 TGGATGTATCTGGACGTATTTTAGTT 58.212 34.615 0.00 0.00 0.00 2.24
5133 5683 7.924412 TGGATGTATCTGGACGTATTTTAGTTC 59.076 37.037 0.00 0.00 0.00 3.01
5134 5684 8.142551 GGATGTATCTGGACGTATTTTAGTTCT 58.857 37.037 0.00 0.00 0.00 3.01
5137 5687 9.399797 TGTATCTGGACGTATTTTAGTTCTAGA 57.600 33.333 0.00 0.00 0.00 2.43
5155 5705 8.962679 AGTTCTAGATATATCCATTTCCGAGAC 58.037 37.037 9.18 0.00 0.00 3.36
5156 5706 8.740906 GTTCTAGATATATCCATTTCCGAGACA 58.259 37.037 9.18 0.00 0.00 3.41
5157 5707 8.879427 TCTAGATATATCCATTTCCGAGACAA 57.121 34.615 9.18 0.00 0.00 3.18
5158 5708 8.740906 TCTAGATATATCCATTTCCGAGACAAC 58.259 37.037 9.18 0.00 0.00 3.32
5159 5709 7.546250 AGATATATCCATTTCCGAGACAACT 57.454 36.000 9.18 0.00 0.00 3.16
5160 5710 8.651589 AGATATATCCATTTCCGAGACAACTA 57.348 34.615 9.18 0.00 0.00 2.24
5161 5711 9.090103 AGATATATCCATTTCCGAGACAACTAA 57.910 33.333 9.18 0.00 0.00 2.24
5162 5712 9.877178 GATATATCCATTTCCGAGACAACTAAT 57.123 33.333 0.81 0.00 0.00 1.73
5164 5714 6.927294 ATCCATTTCCGAGACAACTAATTC 57.073 37.500 0.00 0.00 0.00 2.17
5165 5715 5.183228 TCCATTTCCGAGACAACTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
5166 5716 5.045869 TCCATTTCCGAGACAACTAATTCCT 60.046 40.000 0.00 0.00 0.00 3.36
5167 5717 6.155565 TCCATTTCCGAGACAACTAATTCCTA 59.844 38.462 0.00 0.00 0.00 2.94
5168 5718 6.821665 CCATTTCCGAGACAACTAATTCCTAA 59.178 38.462 0.00 0.00 0.00 2.69
5169 5719 7.201617 CCATTTCCGAGACAACTAATTCCTAAC 60.202 40.741 0.00 0.00 0.00 2.34
5170 5720 4.990257 TCCGAGACAACTAATTCCTAACG 58.010 43.478 0.00 0.00 0.00 3.18
5171 5721 4.110482 CCGAGACAACTAATTCCTAACGG 58.890 47.826 0.00 0.00 0.00 4.44
5172 5722 4.142315 CCGAGACAACTAATTCCTAACGGA 60.142 45.833 0.00 0.00 38.09 4.69
5173 5723 5.035443 CGAGACAACTAATTCCTAACGGAG 58.965 45.833 0.00 0.00 41.25 4.63
5175 5725 4.161754 AGACAACTAATTCCTAACGGAGGG 59.838 45.833 5.85 0.00 46.70 4.30
5176 5726 4.098894 ACAACTAATTCCTAACGGAGGGA 58.901 43.478 5.85 0.00 46.70 4.20
5177 5727 4.161754 ACAACTAATTCCTAACGGAGGGAG 59.838 45.833 5.85 2.32 46.70 4.30
5178 5728 3.991683 ACTAATTCCTAACGGAGGGAGT 58.008 45.455 5.85 0.00 46.70 3.85
5179 5729 5.134725 ACTAATTCCTAACGGAGGGAGTA 57.865 43.478 5.85 0.51 46.70 2.59
5211 5761 3.593442 TGGGTGGTCTTCACTGATTTT 57.407 42.857 0.00 0.00 45.38 1.82
5291 5842 2.072298 GCTCAGCACTCTCGAAACAAT 58.928 47.619 0.00 0.00 0.00 2.71
5292 5843 2.481952 GCTCAGCACTCTCGAAACAATT 59.518 45.455 0.00 0.00 0.00 2.32
5293 5844 3.679980 GCTCAGCACTCTCGAAACAATTA 59.320 43.478 0.00 0.00 0.00 1.40
5294 5845 4.331168 GCTCAGCACTCTCGAAACAATTAT 59.669 41.667 0.00 0.00 0.00 1.28
5313 5864 9.970395 ACAATTATTGATGCCTTACATAACATG 57.030 29.630 12.28 0.00 39.84 3.21
5333 5884 4.322080 TGGTCCTAATAATCGTGCTGAG 57.678 45.455 0.00 0.00 0.00 3.35
5342 5893 5.936686 ATAATCGTGCTGAGATGAAATGG 57.063 39.130 0.00 0.00 0.00 3.16
5366 5917 3.874383 TCATGTTTGGGTGGAGAAGAA 57.126 42.857 0.00 0.00 0.00 2.52
5371 5922 2.472695 TTGGGTGGAGAAGAACATCG 57.527 50.000 0.00 0.00 0.00 3.84
5380 5931 6.210078 GTGGAGAAGAACATCGTCCTATAAG 58.790 44.000 0.00 0.00 0.00 1.73
5381 5932 5.221263 TGGAGAAGAACATCGTCCTATAAGC 60.221 44.000 0.00 0.00 0.00 3.09
5383 5934 3.014604 AGAACATCGTCCTATAAGCGC 57.985 47.619 0.00 0.00 0.00 5.92
5386 5937 0.387367 CATCGTCCTATAAGCGCGCT 60.387 55.000 31.32 31.32 0.00 5.92
5413 5964 6.455360 TCAGGATGAATAATTCTTGGTTGC 57.545 37.500 0.00 0.00 45.97 4.17
5427 5978 3.451141 TGGTTGCCTGACATTTTTCAC 57.549 42.857 0.00 0.00 0.00 3.18
5432 5983 4.044336 TGCCTGACATTTTTCACACAAG 57.956 40.909 0.00 0.00 0.00 3.16
5452 6003 1.758862 GCAATTTGCATAAGAGGGCCT 59.241 47.619 16.35 5.25 44.26 5.19
5461 6012 0.642156 TAAGAGGGCCTGAGGATCCA 59.358 55.000 12.95 0.00 0.00 3.41
5467 6018 1.777272 GGGCCTGAGGATCCATTTACT 59.223 52.381 15.82 0.00 0.00 2.24
5477 6028 7.432869 TGAGGATCCATTTACTTGTTTGTTTG 58.567 34.615 15.82 0.00 0.00 2.93
5491 6042 8.508062 ACTTGTTTGTTTGTTAAATTGGAAACC 58.492 29.630 0.00 0.00 0.00 3.27
5492 6043 7.979444 TGTTTGTTTGTTAAATTGGAAACCA 57.021 28.000 0.00 0.00 0.00 3.67
5493 6044 8.567285 TGTTTGTTTGTTAAATTGGAAACCAT 57.433 26.923 0.00 0.00 31.53 3.55
5494 6045 9.014297 TGTTTGTTTGTTAAATTGGAAACCATT 57.986 25.926 0.00 0.00 31.53 3.16
5563 6114 9.936759 TTTATAAAACTGGAAACCATTTGGATC 57.063 29.630 3.01 1.45 38.94 3.36
5600 6151 7.801716 TCTACTGTACTTTGCAAGTGATTTT 57.198 32.000 0.00 0.00 42.84 1.82
5616 6183 7.595819 AGTGATTTTGAAGGACCAACATAAA 57.404 32.000 0.00 0.00 0.00 1.40
5618 6185 8.143835 AGTGATTTTGAAGGACCAACATAAAAG 58.856 33.333 0.00 0.00 0.00 2.27
5627 6194 7.050970 AGGACCAACATAAAAGTTTCCTTTC 57.949 36.000 0.00 0.00 40.01 2.62
5628 6195 6.041637 AGGACCAACATAAAAGTTTCCTTTCC 59.958 38.462 0.00 0.00 40.01 3.13
5629 6196 6.041637 GGACCAACATAAAAGTTTCCTTTCCT 59.958 38.462 0.00 0.00 40.01 3.36
5630 6197 6.816136 ACCAACATAAAAGTTTCCTTTCCTG 58.184 36.000 0.00 0.00 40.01 3.86
5631 6198 6.382859 ACCAACATAAAAGTTTCCTTTCCTGT 59.617 34.615 0.00 0.00 40.01 4.00
5632 6199 6.701400 CCAACATAAAAGTTTCCTTTCCTGTG 59.299 38.462 0.00 0.00 40.01 3.66
5633 6200 7.417342 CCAACATAAAAGTTTCCTTTCCTGTGA 60.417 37.037 0.00 0.00 40.01 3.58
5634 6201 7.039313 ACATAAAAGTTTCCTTTCCTGTGAC 57.961 36.000 0.00 0.00 40.01 3.67
5635 6202 6.605594 ACATAAAAGTTTCCTTTCCTGTGACA 59.394 34.615 0.00 0.00 40.01 3.58
5637 6204 5.582689 AAAGTTTCCTTTCCTGTGACAAG 57.417 39.130 0.00 0.00 36.08 3.16
5638 6205 2.952310 AGTTTCCTTTCCTGTGACAAGC 59.048 45.455 0.00 0.00 0.00 4.01
5639 6206 2.687935 GTTTCCTTTCCTGTGACAAGCA 59.312 45.455 0.00 0.00 0.00 3.91
5640 6207 8.508555 AAAGTTTCCTTTCCTGTGACAAGCAC 62.509 42.308 0.00 0.00 41.21 4.40
5660 6227 5.733226 CACAATATGCAACTAATCGTCCA 57.267 39.130 0.00 0.00 0.00 4.02
5661 6228 5.741425 CACAATATGCAACTAATCGTCCAG 58.259 41.667 0.00 0.00 0.00 3.86
5662 6229 5.523552 CACAATATGCAACTAATCGTCCAGA 59.476 40.000 0.00 0.00 0.00 3.86
5663 6230 5.523916 ACAATATGCAACTAATCGTCCAGAC 59.476 40.000 0.00 0.00 0.00 3.51
5664 6231 3.895232 ATGCAACTAATCGTCCAGACT 57.105 42.857 0.00 0.00 0.00 3.24
5665 6232 3.678056 TGCAACTAATCGTCCAGACTT 57.322 42.857 0.00 0.00 0.00 3.01
5666 6233 4.002906 TGCAACTAATCGTCCAGACTTT 57.997 40.909 0.00 0.00 0.00 2.66
5667 6234 3.994392 TGCAACTAATCGTCCAGACTTTC 59.006 43.478 0.00 0.00 0.00 2.62
5668 6235 3.994392 GCAACTAATCGTCCAGACTTTCA 59.006 43.478 0.00 0.00 0.00 2.69
5669 6236 4.631813 GCAACTAATCGTCCAGACTTTCAT 59.368 41.667 0.00 0.00 0.00 2.57
5670 6237 5.220491 GCAACTAATCGTCCAGACTTTCATC 60.220 44.000 0.00 0.00 0.00 2.92
5671 6238 5.923733 ACTAATCGTCCAGACTTTCATCT 57.076 39.130 0.00 0.00 0.00 2.90
5672 6239 7.258441 CAACTAATCGTCCAGACTTTCATCTA 58.742 38.462 0.00 0.00 0.00 1.98
5673 6240 7.406031 ACTAATCGTCCAGACTTTCATCTAA 57.594 36.000 0.00 0.00 0.00 2.10
5674 6241 7.837863 ACTAATCGTCCAGACTTTCATCTAAA 58.162 34.615 0.00 0.00 0.00 1.85
5675 6242 6.969828 AATCGTCCAGACTTTCATCTAAAC 57.030 37.500 0.00 0.00 0.00 2.01
5676 6243 4.817517 TCGTCCAGACTTTCATCTAAACC 58.182 43.478 0.00 0.00 0.00 3.27
5677 6244 4.527038 TCGTCCAGACTTTCATCTAAACCT 59.473 41.667 0.00 0.00 0.00 3.50
5678 6245 4.865365 CGTCCAGACTTTCATCTAAACCTC 59.135 45.833 0.00 0.00 0.00 3.85
5679 6246 5.566826 CGTCCAGACTTTCATCTAAACCTCA 60.567 44.000 0.00 0.00 0.00 3.86
5680 6247 6.231211 GTCCAGACTTTCATCTAAACCTCAA 58.769 40.000 0.00 0.00 0.00 3.02
5681 6248 6.710744 GTCCAGACTTTCATCTAAACCTCAAA 59.289 38.462 0.00 0.00 0.00 2.69
5682 6249 7.391833 GTCCAGACTTTCATCTAAACCTCAAAT 59.608 37.037 0.00 0.00 0.00 2.32
5683 6250 8.602424 TCCAGACTTTCATCTAAACCTCAAATA 58.398 33.333 0.00 0.00 0.00 1.40
5684 6251 8.887717 CCAGACTTTCATCTAAACCTCAAATAG 58.112 37.037 0.00 0.00 0.00 1.73
5685 6252 9.658799 CAGACTTTCATCTAAACCTCAAATAGA 57.341 33.333 0.00 0.00 0.00 1.98
5699 6266 9.764363 AACCTCAAATAGATTCTTTGGAAAAAC 57.236 29.630 0.00 0.00 34.95 2.43
5700 6267 8.367911 ACCTCAAATAGATTCTTTGGAAAAACC 58.632 33.333 0.00 0.00 34.95 3.27
5709 6276 2.517609 TGGAAAAACCAAACCCCCG 58.482 52.632 0.00 0.00 46.75 5.73
5710 6277 1.070105 GGAAAAACCAAACCCCCGC 59.930 57.895 0.00 0.00 38.79 6.13
5711 6278 1.404479 GGAAAAACCAAACCCCCGCT 61.404 55.000 0.00 0.00 38.79 5.52
5712 6279 0.249699 GAAAAACCAAACCCCCGCTG 60.250 55.000 0.00 0.00 0.00 5.18
5713 6280 2.318519 AAAAACCAAACCCCCGCTGC 62.319 55.000 0.00 0.00 0.00 5.25
5714 6281 4.531426 AACCAAACCCCCGCTGCA 62.531 61.111 0.00 0.00 0.00 4.41
5715 6282 3.826265 AACCAAACCCCCGCTGCAT 62.826 57.895 0.00 0.00 0.00 3.96
5716 6283 3.762247 CCAAACCCCCGCTGCATG 61.762 66.667 0.00 0.00 0.00 4.06
5717 6284 4.440127 CAAACCCCCGCTGCATGC 62.440 66.667 11.82 11.82 38.57 4.06
5722 6289 4.809496 CCCCGCTGCATGCCTCTT 62.809 66.667 16.68 0.00 38.78 2.85
5723 6290 2.753043 CCCGCTGCATGCCTCTTT 60.753 61.111 16.68 0.00 38.78 2.52
5724 6291 2.768492 CCCGCTGCATGCCTCTTTC 61.768 63.158 16.68 0.00 38.78 2.62
5725 6292 1.748122 CCGCTGCATGCCTCTTTCT 60.748 57.895 16.68 0.00 38.78 2.52
5726 6293 1.712977 CCGCTGCATGCCTCTTTCTC 61.713 60.000 16.68 0.00 38.78 2.87
5727 6294 1.720301 GCTGCATGCCTCTTTCTCG 59.280 57.895 16.68 0.00 35.15 4.04
5728 6295 1.023513 GCTGCATGCCTCTTTCTCGT 61.024 55.000 16.68 0.00 35.15 4.18
5729 6296 0.725686 CTGCATGCCTCTTTCTCGTG 59.274 55.000 16.68 0.00 0.00 4.35
5730 6297 0.674581 TGCATGCCTCTTTCTCGTGG 60.675 55.000 16.68 0.00 0.00 4.94
5731 6298 1.986575 GCATGCCTCTTTCTCGTGGC 61.987 60.000 6.36 0.00 42.38 5.01
5732 6299 1.078143 ATGCCTCTTTCTCGTGGCC 60.078 57.895 0.00 0.00 41.60 5.36
5733 6300 2.815647 GCCTCTTTCTCGTGGCCG 60.816 66.667 0.00 0.00 37.54 6.13
5734 6301 2.815647 CCTCTTTCTCGTGGCCGC 60.816 66.667 6.11 6.11 0.00 6.53
5735 6302 2.815647 CTCTTTCTCGTGGCCGCC 60.816 66.667 11.56 1.04 0.00 6.13
5736 6303 4.388499 TCTTTCTCGTGGCCGCCC 62.388 66.667 11.56 0.00 0.00 6.13
5748 6315 4.016706 CCGCCCGAAACTCACCCT 62.017 66.667 0.00 0.00 0.00 4.34
5749 6316 2.434359 CGCCCGAAACTCACCCTC 60.434 66.667 0.00 0.00 0.00 4.30
5750 6317 2.747686 GCCCGAAACTCACCCTCA 59.252 61.111 0.00 0.00 0.00 3.86
5751 6318 1.671379 GCCCGAAACTCACCCTCAC 60.671 63.158 0.00 0.00 0.00 3.51
5752 6319 2.058675 CCCGAAACTCACCCTCACT 58.941 57.895 0.00 0.00 0.00 3.41
5753 6320 1.263356 CCCGAAACTCACCCTCACTA 58.737 55.000 0.00 0.00 0.00 2.74
5754 6321 1.831736 CCCGAAACTCACCCTCACTAT 59.168 52.381 0.00 0.00 0.00 2.12
5755 6322 3.028850 CCCGAAACTCACCCTCACTATA 58.971 50.000 0.00 0.00 0.00 1.31
5756 6323 3.641906 CCCGAAACTCACCCTCACTATAT 59.358 47.826 0.00 0.00 0.00 0.86
5757 6324 4.262079 CCCGAAACTCACCCTCACTATATC 60.262 50.000 0.00 0.00 0.00 1.63
5758 6325 4.585162 CCGAAACTCACCCTCACTATATCT 59.415 45.833 0.00 0.00 0.00 1.98
5759 6326 5.069251 CCGAAACTCACCCTCACTATATCTT 59.931 44.000 0.00 0.00 0.00 2.40
5760 6327 6.210078 CGAAACTCACCCTCACTATATCTTC 58.790 44.000 0.00 0.00 0.00 2.87
5761 6328 6.039941 CGAAACTCACCCTCACTATATCTTCT 59.960 42.308 0.00 0.00 0.00 2.85
5762 6329 7.228906 CGAAACTCACCCTCACTATATCTTCTA 59.771 40.741 0.00 0.00 0.00 2.10
5763 6330 8.472007 AAACTCACCCTCACTATATCTTCTAG 57.528 38.462 0.00 0.00 0.00 2.43
5764 6331 6.548321 ACTCACCCTCACTATATCTTCTAGG 58.452 44.000 0.00 0.00 0.00 3.02
5765 6332 5.326069 TCACCCTCACTATATCTTCTAGGC 58.674 45.833 0.00 0.00 0.00 3.93
5766 6333 5.080337 CACCCTCACTATATCTTCTAGGCA 58.920 45.833 0.00 0.00 0.00 4.75
5767 6334 5.540337 CACCCTCACTATATCTTCTAGGCAA 59.460 44.000 0.00 0.00 0.00 4.52
5768 6335 6.042093 CACCCTCACTATATCTTCTAGGCAAA 59.958 42.308 0.00 0.00 0.00 3.68
5769 6336 6.268847 ACCCTCACTATATCTTCTAGGCAAAG 59.731 42.308 0.00 0.00 0.00 2.77
5770 6337 6.495181 CCCTCACTATATCTTCTAGGCAAAGA 59.505 42.308 0.00 0.00 37.18 2.52
5771 6338 7.180051 CCCTCACTATATCTTCTAGGCAAAGAT 59.820 40.741 9.42 9.42 43.89 2.40
5772 6339 8.250332 CCTCACTATATCTTCTAGGCAAAGATC 58.750 40.741 8.10 0.00 41.42 2.75
5773 6340 7.821652 TCACTATATCTTCTAGGCAAAGATCG 58.178 38.462 8.10 3.18 41.42 3.69
5774 6341 7.665974 TCACTATATCTTCTAGGCAAAGATCGA 59.334 37.037 8.10 0.00 41.42 3.59
5775 6342 7.753132 CACTATATCTTCTAGGCAAAGATCGAC 59.247 40.741 8.10 0.00 41.42 4.20
5776 6343 3.422417 TCTTCTAGGCAAAGATCGACG 57.578 47.619 0.00 0.00 0.00 5.12
5777 6344 3.014623 TCTTCTAGGCAAAGATCGACGA 58.985 45.455 0.00 0.00 0.00 4.20
5778 6345 2.846039 TCTAGGCAAAGATCGACGAC 57.154 50.000 0.00 0.00 0.00 4.34
5779 6346 1.404391 TCTAGGCAAAGATCGACGACC 59.596 52.381 0.00 0.00 0.00 4.79
5780 6347 0.458669 TAGGCAAAGATCGACGACCC 59.541 55.000 0.00 0.00 0.00 4.46
5781 6348 1.079405 GGCAAAGATCGACGACCCA 60.079 57.895 0.00 0.00 0.00 4.51
5782 6349 0.462047 GGCAAAGATCGACGACCCAT 60.462 55.000 0.00 0.00 0.00 4.00
5783 6350 1.202486 GGCAAAGATCGACGACCCATA 60.202 52.381 0.00 0.00 0.00 2.74
5784 6351 2.548067 GGCAAAGATCGACGACCCATAT 60.548 50.000 0.00 0.00 0.00 1.78
5785 6352 3.131396 GCAAAGATCGACGACCCATATT 58.869 45.455 0.00 0.00 0.00 1.28
5786 6353 3.560068 GCAAAGATCGACGACCCATATTT 59.440 43.478 0.00 0.00 0.00 1.40
5787 6354 4.035208 GCAAAGATCGACGACCCATATTTT 59.965 41.667 0.00 0.00 0.00 1.82
5788 6355 5.448632 GCAAAGATCGACGACCCATATTTTT 60.449 40.000 0.00 0.00 0.00 1.94
5789 6356 5.986004 AAGATCGACGACCCATATTTTTC 57.014 39.130 0.00 0.00 0.00 2.29
5790 6357 4.377897 AGATCGACGACCCATATTTTTCC 58.622 43.478 0.00 0.00 0.00 3.13
5791 6358 3.899052 TCGACGACCCATATTTTTCCT 57.101 42.857 0.00 0.00 0.00 3.36
5792 6359 5.303589 AGATCGACGACCCATATTTTTCCTA 59.696 40.000 0.00 0.00 0.00 2.94
5793 6360 4.940463 TCGACGACCCATATTTTTCCTAG 58.060 43.478 0.00 0.00 0.00 3.02
5794 6361 4.403432 TCGACGACCCATATTTTTCCTAGT 59.597 41.667 0.00 0.00 0.00 2.57
5795 6362 4.743644 CGACGACCCATATTTTTCCTAGTC 59.256 45.833 0.00 0.00 0.00 2.59
5796 6363 5.032327 ACGACCCATATTTTTCCTAGTCC 57.968 43.478 0.00 0.00 0.00 3.85
5797 6364 4.472108 ACGACCCATATTTTTCCTAGTCCA 59.528 41.667 0.00 0.00 0.00 4.02
5798 6365 5.057149 CGACCCATATTTTTCCTAGTCCAG 58.943 45.833 0.00 0.00 0.00 3.86
5799 6366 5.163343 CGACCCATATTTTTCCTAGTCCAGA 60.163 44.000 0.00 0.00 0.00 3.86
5800 6367 6.253946 ACCCATATTTTTCCTAGTCCAGAG 57.746 41.667 0.00 0.00 0.00 3.35
5801 6368 5.132816 ACCCATATTTTTCCTAGTCCAGAGG 59.867 44.000 0.00 0.00 35.17 3.69
5802 6369 5.456763 CCCATATTTTTCCTAGTCCAGAGGG 60.457 48.000 0.00 0.00 34.56 4.30
5803 6370 3.653835 ATTTTTCCTAGTCCAGAGGGC 57.346 47.619 0.00 0.00 34.56 5.19
5804 6371 0.902531 TTTTCCTAGTCCAGAGGGCG 59.097 55.000 0.00 0.00 34.56 6.13
5805 6372 1.614241 TTTCCTAGTCCAGAGGGCGC 61.614 60.000 0.00 0.00 34.56 6.53
5806 6373 3.541713 CCTAGTCCAGAGGGCGCC 61.542 72.222 21.18 21.18 0.00 6.53
5807 6374 2.759973 CTAGTCCAGAGGGCGCCA 60.760 66.667 30.85 2.40 0.00 5.69
5808 6375 2.041922 TAGTCCAGAGGGCGCCAT 60.042 61.111 30.85 24.69 0.00 4.40
5809 6376 0.827925 CTAGTCCAGAGGGCGCCATA 60.828 60.000 30.85 1.95 0.00 2.74
5810 6377 0.178932 TAGTCCAGAGGGCGCCATAT 60.179 55.000 30.85 17.82 0.00 1.78
5811 6378 1.302033 GTCCAGAGGGCGCCATATG 60.302 63.158 27.68 27.68 0.00 1.78
5812 6379 2.670934 CCAGAGGGCGCCATATGC 60.671 66.667 29.04 10.38 0.00 3.14
5813 6380 2.111669 CAGAGGGCGCCATATGCA 59.888 61.111 30.85 0.00 41.33 3.96
5814 6381 1.526686 CAGAGGGCGCCATATGCAA 60.527 57.895 30.85 0.00 41.33 4.08
5815 6382 1.102809 CAGAGGGCGCCATATGCAAA 61.103 55.000 30.85 0.00 41.33 3.68
5816 6383 0.395586 AGAGGGCGCCATATGCAAAA 60.396 50.000 30.85 0.00 41.33 2.44
5817 6384 0.675633 GAGGGCGCCATATGCAAAAT 59.324 50.000 30.85 0.00 41.33 1.82
5818 6385 1.069049 GAGGGCGCCATATGCAAAATT 59.931 47.619 30.85 0.00 41.33 1.82
5819 6386 2.295909 GAGGGCGCCATATGCAAAATTA 59.704 45.455 30.85 0.00 41.33 1.40
5820 6387 2.297033 AGGGCGCCATATGCAAAATTAG 59.703 45.455 30.85 0.00 41.33 1.73
5821 6388 2.035832 GGGCGCCATATGCAAAATTAGT 59.964 45.455 30.85 0.00 41.33 2.24
5822 6389 3.308530 GGCGCCATATGCAAAATTAGTC 58.691 45.455 24.80 0.00 41.33 2.59
5823 6390 3.004734 GGCGCCATATGCAAAATTAGTCT 59.995 43.478 24.80 0.00 41.33 3.24
5824 6391 4.499696 GGCGCCATATGCAAAATTAGTCTT 60.500 41.667 24.80 0.00 41.33 3.01
5825 6392 4.676924 GCGCCATATGCAAAATTAGTCTTC 59.323 41.667 0.00 0.00 41.33 2.87
5826 6393 5.506317 GCGCCATATGCAAAATTAGTCTTCT 60.506 40.000 0.00 0.00 41.33 2.85
5827 6394 6.138761 CGCCATATGCAAAATTAGTCTTCTC 58.861 40.000 0.00 0.00 41.33 2.87
5828 6395 6.238456 CGCCATATGCAAAATTAGTCTTCTCA 60.238 38.462 0.00 0.00 41.33 3.27
5829 6396 7.521099 CGCCATATGCAAAATTAGTCTTCTCAT 60.521 37.037 0.00 0.00 41.33 2.90
5830 6397 7.594015 GCCATATGCAAAATTAGTCTTCTCATG 59.406 37.037 0.00 0.00 40.77 3.07
5831 6398 7.594015 CCATATGCAAAATTAGTCTTCTCATGC 59.406 37.037 0.00 0.00 0.00 4.06
5832 6399 5.963176 TGCAAAATTAGTCTTCTCATGCA 57.037 34.783 0.00 0.00 38.78 3.96
5833 6400 6.519679 TGCAAAATTAGTCTTCTCATGCAT 57.480 33.333 0.00 0.00 36.46 3.96
5834 6401 7.628769 TGCAAAATTAGTCTTCTCATGCATA 57.371 32.000 0.00 0.00 36.46 3.14
5835 6402 8.229253 TGCAAAATTAGTCTTCTCATGCATAT 57.771 30.769 0.00 0.00 36.46 1.78
5836 6403 9.341078 TGCAAAATTAGTCTTCTCATGCATATA 57.659 29.630 0.00 0.00 36.46 0.86
5837 6404 9.604626 GCAAAATTAGTCTTCTCATGCATATAC 57.395 33.333 0.00 0.00 0.00 1.47
5843 6410 7.789202 AGTCTTCTCATGCATATACATACCT 57.211 36.000 0.00 0.00 0.00 3.08
5844 6411 8.885693 AGTCTTCTCATGCATATACATACCTA 57.114 34.615 0.00 0.00 0.00 3.08
5845 6412 8.744652 AGTCTTCTCATGCATATACATACCTAC 58.255 37.037 0.00 0.00 0.00 3.18
5846 6413 7.976734 GTCTTCTCATGCATATACATACCTACC 59.023 40.741 0.00 0.00 0.00 3.18
5847 6414 7.673926 TCTTCTCATGCATATACATACCTACCA 59.326 37.037 0.00 0.00 0.00 3.25
5848 6415 7.410120 TCTCATGCATATACATACCTACCAG 57.590 40.000 0.00 0.00 0.00 4.00
5849 6416 6.381133 TCTCATGCATATACATACCTACCAGG 59.619 42.308 0.00 0.00 42.49 4.45
5850 6417 4.819105 TGCATATACATACCTACCAGGC 57.181 45.455 0.00 0.00 39.63 4.85
5851 6418 4.164204 TGCATATACATACCTACCAGGCA 58.836 43.478 0.00 0.00 39.63 4.75
5852 6419 4.782691 TGCATATACATACCTACCAGGCAT 59.217 41.667 0.00 0.00 39.63 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 16 4.902448 ACCTTGTAGATTGGAGGGAGTATC 59.098 45.833 0.00 0.00 33.51 2.24
47 49 3.003378 CGATCCATACTACTTGTCGCAGA 59.997 47.826 0.00 0.00 0.00 4.26
50 52 3.620929 TCGATCCATACTACTTGTCGC 57.379 47.619 0.00 0.00 0.00 5.19
60 62 8.608844 AAATGAATTACTCCTTCGATCCATAC 57.391 34.615 0.00 0.00 0.00 2.39
153 158 8.950007 TTAACATATGGTCTTCCTTTTCCTTT 57.050 30.769 7.80 0.00 34.23 3.11
221 228 3.506067 CCAGAAAAGAAAAGGTACGCCAT 59.494 43.478 0.00 0.00 37.19 4.40
226 233 6.937436 TTCTGACCAGAAAAGAAAAGGTAC 57.063 37.500 9.78 0.00 43.79 3.34
264 392 9.268255 CTATTTAAAATTGCGTTTACGTCATCA 57.732 29.630 0.00 0.00 42.22 3.07
288 416 6.767423 TGCTGCTGTATCATAAAGCATTTCTA 59.233 34.615 10.14 0.00 45.35 2.10
290 418 5.824429 TGCTGCTGTATCATAAAGCATTTC 58.176 37.500 10.14 3.90 45.35 2.17
294 422 2.615447 GCTGCTGCTGTATCATAAAGCA 59.385 45.455 9.32 9.32 44.36 3.91
296 424 3.303857 GCTGCTGCTGCTGTATCATAAAG 60.304 47.826 22.10 6.18 39.81 1.85
320 448 1.135141 TGTTGTTGTTGTTCCTGCTGC 60.135 47.619 0.00 0.00 0.00 5.25
327 455 5.643339 TGTTGTTGTTGTTGTTGTTGTTC 57.357 34.783 0.00 0.00 0.00 3.18
397 553 3.929610 TGCAATCGTACGTTGATCATTCA 59.070 39.130 24.77 14.06 0.00 2.57
407 563 1.933181 CATCCATGTGCAATCGTACGT 59.067 47.619 16.05 0.00 0.00 3.57
437 593 4.100529 CGTCTCACGTAACGGAACAATAT 58.899 43.478 8.85 0.00 36.74 1.28
439 595 2.322161 CGTCTCACGTAACGGAACAAT 58.678 47.619 8.85 0.00 36.74 2.71
464 647 1.985159 TGTAGACCTCATGGCCTTGTT 59.015 47.619 17.54 4.46 36.63 2.83
466 649 2.749621 GTTTGTAGACCTCATGGCCTTG 59.250 50.000 12.41 12.41 36.63 3.61
467 650 2.375174 TGTTTGTAGACCTCATGGCCTT 59.625 45.455 3.32 0.00 36.63 4.35
489 672 9.399797 AGCACATAAGAAGATGAAAATATGACA 57.600 29.630 0.00 0.00 0.00 3.58
490 673 9.661187 CAGCACATAAGAAGATGAAAATATGAC 57.339 33.333 0.00 0.00 0.00 3.06
508 691 2.818169 GGCCGGATCCCAGCACATA 61.818 63.158 20.06 0.00 0.00 2.29
509 692 4.195334 GGCCGGATCCCAGCACAT 62.195 66.667 20.06 0.00 0.00 3.21
515 698 3.722951 TACCCATGGCCGGATCCCA 62.723 63.158 5.05 2.87 36.66 4.37
520 703 0.923358 ATTTTCTACCCATGGCCGGA 59.077 50.000 5.05 0.10 0.00 5.14
570 756 4.101119 GCCTCCCACTATAACAGAAGCTAA 59.899 45.833 0.00 0.00 0.00 3.09
574 760 4.696479 ATGCCTCCCACTATAACAGAAG 57.304 45.455 0.00 0.00 0.00 2.85
650 839 3.785486 TCTTCATCGACAAGATTGCGAT 58.215 40.909 14.69 14.69 43.11 4.58
664 853 4.095483 GTCCACCACATTGACATCTTCATC 59.905 45.833 0.00 0.00 32.84 2.92
665 854 4.012374 GTCCACCACATTGACATCTTCAT 58.988 43.478 0.00 0.00 32.84 2.57
666 855 3.181446 TGTCCACCACATTGACATCTTCA 60.181 43.478 0.00 0.00 34.28 3.02
683 872 3.593442 ATTGTTTTCTCTGGGTGTCCA 57.407 42.857 0.00 0.00 41.58 4.02
684 873 6.208599 TCATTTATTGTTTTCTCTGGGTGTCC 59.791 38.462 0.00 0.00 0.00 4.02
685 874 7.214467 TCATTTATTGTTTTCTCTGGGTGTC 57.786 36.000 0.00 0.00 0.00 3.67
704 893 3.738791 GTCCGCGGAAACAAAATTCATTT 59.261 39.130 32.93 0.00 0.00 2.32
729 918 6.458615 GCAAAATCCATTATTGGTTGCCATTC 60.459 38.462 14.84 0.00 42.46 2.67
821 1084 5.951747 TCATTTCATTTCCTTCCTTGGTAGG 59.048 40.000 6.04 6.04 43.46 3.18
822 1085 7.466746 TTCATTTCATTTCCTTCCTTGGTAG 57.533 36.000 0.00 0.00 0.00 3.18
823 1086 7.847711 TTTCATTTCATTTCCTTCCTTGGTA 57.152 32.000 0.00 0.00 0.00 3.25
824 1087 6.745794 TTTCATTTCATTTCCTTCCTTGGT 57.254 33.333 0.00 0.00 0.00 3.67
825 1088 7.173735 CCTTTTTCATTTCATTTCCTTCCTTGG 59.826 37.037 0.00 0.00 0.00 3.61
826 1089 7.933033 TCCTTTTTCATTTCATTTCCTTCCTTG 59.067 33.333 0.00 0.00 0.00 3.61
827 1090 8.033178 TCCTTTTTCATTTCATTTCCTTCCTT 57.967 30.769 0.00 0.00 0.00 3.36
828 1091 7.616528 TCCTTTTTCATTTCATTTCCTTCCT 57.383 32.000 0.00 0.00 0.00 3.36
838 1101 5.539955 CCCTCTCCTTTCCTTTTTCATTTCA 59.460 40.000 0.00 0.00 0.00 2.69
846 1109 3.005529 TCTCCCCTCTCCTTTCCTTTT 57.994 47.619 0.00 0.00 0.00 2.27
847 1110 2.743131 TCTCCCCTCTCCTTTCCTTT 57.257 50.000 0.00 0.00 0.00 3.11
848 1111 2.743131 TTCTCCCCTCTCCTTTCCTT 57.257 50.000 0.00 0.00 0.00 3.36
849 1112 2.743131 TTTCTCCCCTCTCCTTTCCT 57.257 50.000 0.00 0.00 0.00 3.36
850 1113 3.808834 TTTTTCTCCCCTCTCCTTTCC 57.191 47.619 0.00 0.00 0.00 3.13
851 1114 3.942115 CGATTTTTCTCCCCTCTCCTTTC 59.058 47.826 0.00 0.00 0.00 2.62
881 1144 4.357947 GACGGACGGAGCTGCACA 62.358 66.667 5.91 0.00 0.00 4.57
884 1147 4.373116 TTGGACGGACGGAGCTGC 62.373 66.667 0.00 0.00 0.00 5.25
885 1148 2.432628 GTTGGACGGACGGAGCTG 60.433 66.667 0.00 0.00 0.00 4.24
887 1150 2.999739 TTTGGTTGGACGGACGGAGC 63.000 60.000 0.00 0.00 0.00 4.70
891 1154 0.165079 CGATTTTGGTTGGACGGACG 59.835 55.000 0.00 0.00 0.00 4.79
892 1155 1.232119 ACGATTTTGGTTGGACGGAC 58.768 50.000 0.00 0.00 0.00 4.79
912 1175 1.502231 GAGTCGAAGCAAGTCAAGCA 58.498 50.000 0.00 0.00 0.00 3.91
913 1176 0.793250 GGAGTCGAAGCAAGTCAAGC 59.207 55.000 0.00 0.00 0.00 4.01
931 1198 2.928396 AACGGAGGTGGGAGGTGG 60.928 66.667 0.00 0.00 0.00 4.61
932 1199 2.347490 CAACGGAGGTGGGAGGTG 59.653 66.667 0.00 0.00 0.00 4.00
933 1200 2.928396 CCAACGGAGGTGGGAGGT 60.928 66.667 0.00 0.00 39.95 3.85
934 1201 2.526046 AACCAACGGAGGTGGGAGG 61.526 63.158 9.11 0.00 39.95 4.30
935 1202 1.302511 CAACCAACGGAGGTGGGAG 60.303 63.158 9.11 0.00 39.95 4.30
936 1203 2.833227 CAACCAACGGAGGTGGGA 59.167 61.111 9.11 0.00 39.95 4.37
937 1204 2.983592 GCAACCAACGGAGGTGGG 60.984 66.667 9.11 0.00 42.25 4.61
1266 1539 2.203938 TGGACCTGGACCTGGACC 60.204 66.667 25.42 25.42 37.66 4.46
1267 1540 0.618968 ATCTGGACCTGGACCTGGAC 60.619 60.000 23.36 16.79 0.00 4.02
1268 1541 0.618680 CATCTGGACCTGGACCTGGA 60.619 60.000 23.36 15.00 0.00 3.86
1269 1542 1.630126 CCATCTGGACCTGGACCTGG 61.630 65.000 18.68 15.59 37.39 4.45
1270 1543 0.618680 TCCATCTGGACCTGGACCTG 60.619 60.000 16.02 15.07 39.78 4.00
1271 1544 0.326048 CTCCATCTGGACCTGGACCT 60.326 60.000 16.02 0.00 39.78 3.85
1496 1784 2.327343 TGGAACAGTGCGCTGATGC 61.327 57.895 32.90 25.99 45.28 3.91
1504 1792 2.352960 GCTACAGCTAATGGAACAGTGC 59.647 50.000 0.00 0.00 37.11 4.40
1564 1868 4.976925 CCCGGAGCAGCGCCTATG 62.977 72.222 13.93 0.00 0.00 2.23
1682 1986 2.045536 CTTGCTGACCTGAGGCCC 60.046 66.667 0.00 0.00 0.00 5.80
1703 2007 2.098770 GCAGCAGCAAGGATAAAGAAGG 59.901 50.000 0.00 0.00 41.58 3.46
1705 2009 2.751259 CAGCAGCAGCAAGGATAAAGAA 59.249 45.455 3.17 0.00 45.49 2.52
1748 2058 7.929785 AGGAAAATAAATGGAATGCTATTGCTG 59.070 33.333 0.00 0.00 40.48 4.41
1805 2115 4.464112 GCGTCAATCAGTAGTCCAAAAAC 58.536 43.478 0.00 0.00 0.00 2.43
1819 2129 0.025001 CCGACAATGACGCGTCAATC 59.975 55.000 41.74 33.69 43.58 2.67
1825 2135 0.025001 GATGTTCCGACAATGACGCG 59.975 55.000 3.53 3.53 39.66 6.01
1827 2137 1.660607 CAGGATGTTCCGACAATGACG 59.339 52.381 0.00 0.00 42.75 4.35
1939 2252 3.370978 ACAAAATGATCGAACTGTAGCGG 59.629 43.478 0.00 0.00 0.00 5.52
1968 2281 5.972935 TGAGACTAATATCAGCAAAACGGA 58.027 37.500 0.00 0.00 0.00 4.69
1971 2284 9.495754 GTTGATTGAGACTAATATCAGCAAAAC 57.504 33.333 0.00 0.00 29.62 2.43
1985 2298 5.987953 CGACCATCATATGTTGATTGAGACT 59.012 40.000 14.19 0.00 42.62 3.24
2060 2381 4.445453 TGCTTAACATCATCGATTGCTCT 58.555 39.130 0.00 0.00 0.00 4.09
2124 2451 8.096621 TGTATCTCCAGGTAACCATTATGAAA 57.903 34.615 0.00 0.00 37.17 2.69
2130 2457 6.831664 AGATTGTATCTCCAGGTAACCATT 57.168 37.500 0.00 0.00 33.42 3.16
2131 2458 7.931015 TTAGATTGTATCTCCAGGTAACCAT 57.069 36.000 0.00 0.00 40.76 3.55
2141 2482 6.480320 ACGCACTTCATTTAGATTGTATCTCC 59.520 38.462 0.00 0.00 40.76 3.71
2142 2483 7.222805 TCACGCACTTCATTTAGATTGTATCTC 59.777 37.037 0.00 0.00 40.76 2.75
2179 2521 7.065443 TGAGATTACAGCATTTCACTTCAGATG 59.935 37.037 0.00 0.00 0.00 2.90
2208 2550 3.659089 AATCGGTCCCCAACTCGCG 62.659 63.158 0.00 0.00 0.00 5.87
2458 2814 1.404391 CCTGTTGCTGCATCTCCAATC 59.596 52.381 1.84 0.00 0.00 2.67
2503 2859 2.872858 GGACAATCCTTCGGCAATACTC 59.127 50.000 0.00 0.00 32.53 2.59
2623 2979 4.911390 TCCAGTTTCTTTCAGATCCTTCC 58.089 43.478 0.00 0.00 0.00 3.46
2626 2982 6.131972 TCAATCCAGTTTCTTTCAGATCCT 57.868 37.500 0.00 0.00 0.00 3.24
2634 2990 4.990426 CCGCAATTTCAATCCAGTTTCTTT 59.010 37.500 0.00 0.00 0.00 2.52
2635 2991 4.280677 TCCGCAATTTCAATCCAGTTTCTT 59.719 37.500 0.00 0.00 0.00 2.52
2845 3201 2.651361 CTGTTCCACTCTCCGCGT 59.349 61.111 4.92 0.00 0.00 6.01
2848 3204 1.608717 CCTCCCTGTTCCACTCTCCG 61.609 65.000 0.00 0.00 0.00 4.63
2907 3263 4.759516 TTTACTTCTGGAAAATGACCGC 57.240 40.909 0.00 0.00 0.00 5.68
2941 3297 1.135112 CCATTGGACTCATCGTCGTCA 60.135 52.381 0.00 0.00 43.79 4.35
3067 3423 3.851098 CTCCCTTAGTTCTGTGCTGTAC 58.149 50.000 0.00 0.00 0.00 2.90
3123 3486 0.898320 GTGCTGAGCTCCTCTTGGTA 59.102 55.000 12.15 0.00 34.23 3.25
3126 3489 0.035881 TTGGTGCTGAGCTCCTCTTG 59.964 55.000 24.05 0.00 42.02 3.02
3132 3495 1.208614 CGCTTTTGGTGCTGAGCTC 59.791 57.895 6.82 6.82 33.09 4.09
3166 3529 6.681178 GCGTTAATTTAGACTACGTACGTACA 59.319 38.462 23.60 7.39 34.89 2.90
3200 3563 6.255020 CCTTCTGCAGAATTATTGAACAATGC 59.745 38.462 28.57 6.07 33.01 3.56
3228 3591 6.341316 AGCGCTATCAAGAAGATTAGAAACA 58.659 36.000 8.99 0.00 38.19 2.83
3377 3740 1.130749 CATGCTGCTGCTCTTCTTGAC 59.869 52.381 17.00 0.00 40.48 3.18
3392 3755 2.583319 CGTCGTCATCGCCATGCT 60.583 61.111 0.00 0.00 36.96 3.79
3399 3762 1.202143 TGATGTTCCTCGTCGTCATCG 60.202 52.381 0.00 0.00 38.06 3.84
3417 3780 1.800586 GCAGCATCACGAAGAAGTTGA 59.199 47.619 0.00 0.00 29.03 3.18
3440 3803 1.203994 TCACTAAGCGAGGCCTAACAC 59.796 52.381 4.42 0.00 0.00 3.32
3615 3978 5.697633 ACCACATTTTCTAATGCAGCAAAAG 59.302 36.000 0.00 0.00 44.05 2.27
3668 4094 6.945636 TCTCCTCTTCCTAACAAATTGGTA 57.054 37.500 0.00 0.00 0.00 3.25
3738 4178 6.700960 CGCACTTCTCTCAATCATTTATCTCT 59.299 38.462 0.00 0.00 0.00 3.10
3753 4193 1.228894 TCAGTCCCCGCACTTCTCT 60.229 57.895 0.00 0.00 0.00 3.10
3759 4199 0.173708 CTAAGTCTCAGTCCCCGCAC 59.826 60.000 0.00 0.00 0.00 5.34
3864 4305 5.010112 TCCAAATTAATGCAAACGAGAACCA 59.990 36.000 0.00 0.00 0.00 3.67
3901 4342 6.074034 CCTTTAACCACGTTTTTAAATGCCAG 60.074 38.462 10.19 1.56 0.00 4.85
3999 4442 4.641645 CAAGCTCACCCACCCGCA 62.642 66.667 0.00 0.00 0.00 5.69
4009 4452 2.108514 GCGTATGCCTGCAAGCTCA 61.109 57.895 9.08 0.00 33.98 4.26
4016 4459 1.666234 GGCTAGAGCGTATGCCTGC 60.666 63.158 2.51 3.09 44.31 4.85
4024 4467 2.581354 CTTGGCTGGCTAGAGCGT 59.419 61.111 0.00 0.00 43.26 5.07
4103 4546 6.710744 TCAATCTTACAAAGAAGGGAAGTCAC 59.289 38.462 0.00 0.00 41.63 3.67
4105 4548 7.627300 GCATCAATCTTACAAAGAAGGGAAGTC 60.627 40.741 0.00 0.00 41.63 3.01
4155 4599 8.518430 TTTTGATATATAGCCTGCAAAACTGA 57.482 30.769 0.00 0.00 32.33 3.41
4156 4600 7.380602 GCTTTTGATATATAGCCTGCAAAACTG 59.619 37.037 0.00 0.00 33.36 3.16
4237 4681 2.555757 GCCATATCAGCCCTCAAATCAC 59.444 50.000 0.00 0.00 0.00 3.06
4376 4820 2.570302 GAGTTACTAACCTTGCTCCCCA 59.430 50.000 0.00 0.00 0.00 4.96
4432 4886 6.830838 AGGCCATGTCTTCCTTTCTAAATTAG 59.169 38.462 5.01 0.00 0.00 1.73
4433 4887 6.603201 CAGGCCATGTCTTCCTTTCTAAATTA 59.397 38.462 5.01 0.00 0.00 1.40
4434 4888 5.420104 CAGGCCATGTCTTCCTTTCTAAATT 59.580 40.000 5.01 0.00 0.00 1.82
4435 4889 4.952335 CAGGCCATGTCTTCCTTTCTAAAT 59.048 41.667 5.01 0.00 0.00 1.40
4436 4890 4.335416 CAGGCCATGTCTTCCTTTCTAAA 58.665 43.478 5.01 0.00 0.00 1.85
4437 4891 3.308402 CCAGGCCATGTCTTCCTTTCTAA 60.308 47.826 5.01 0.00 0.00 2.10
4438 4892 2.239654 CCAGGCCATGTCTTCCTTTCTA 59.760 50.000 5.01 0.00 0.00 2.10
4439 4893 1.005215 CCAGGCCATGTCTTCCTTTCT 59.995 52.381 5.01 0.00 0.00 2.52
4467 4921 3.678548 CGTTTAAGTACAAGAGCAGACCC 59.321 47.826 0.00 0.00 0.00 4.46
4473 4927 5.118203 ACAATCGTCGTTTAAGTACAAGAGC 59.882 40.000 0.00 0.00 0.00 4.09
4474 4928 6.686130 ACAATCGTCGTTTAAGTACAAGAG 57.314 37.500 0.00 0.00 0.00 2.85
4475 4929 6.582295 GGTACAATCGTCGTTTAAGTACAAGA 59.418 38.462 13.97 0.00 33.82 3.02
4479 4933 5.287035 CAGGGTACAATCGTCGTTTAAGTAC 59.713 44.000 0.00 7.59 0.00 2.73
4480 4934 5.182950 TCAGGGTACAATCGTCGTTTAAGTA 59.817 40.000 0.00 0.00 0.00 2.24
4482 4936 4.487948 TCAGGGTACAATCGTCGTTTAAG 58.512 43.478 0.00 0.00 0.00 1.85
4483 4937 4.517952 TCAGGGTACAATCGTCGTTTAA 57.482 40.909 0.00 0.00 0.00 1.52
4484 4938 4.517952 TTCAGGGTACAATCGTCGTTTA 57.482 40.909 0.00 0.00 0.00 2.01
4487 4941 2.888594 CATTCAGGGTACAATCGTCGT 58.111 47.619 0.00 0.00 0.00 4.34
4488 4942 1.593006 GCATTCAGGGTACAATCGTCG 59.407 52.381 0.00 0.00 0.00 5.12
4489 4943 1.940613 GGCATTCAGGGTACAATCGTC 59.059 52.381 0.00 0.00 0.00 4.20
4517 5057 1.375326 GGTTCCCCTGAGACACCAC 59.625 63.158 0.00 0.00 0.00 4.16
4653 5193 0.685785 TTCCACAGCTTGCACCCAAA 60.686 50.000 0.00 0.00 0.00 3.28
4703 5244 2.161012 CACGAAAATCATGCTCAGCACT 59.839 45.455 0.00 0.00 43.04 4.40
4875 5417 3.054728 CCTTTCCTCTTCCTTTCCTCCTC 60.055 52.174 0.00 0.00 0.00 3.71
4891 5433 1.133216 GAAAGCTTCCATCGCCTTTCC 59.867 52.381 0.00 0.00 0.00 3.13
5075 5625 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
5076 5626 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
5077 5627 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
5078 5628 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
5079 5629 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
5080 5630 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
5081 5631 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
5082 5632 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
5083 5633 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
5084 5634 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
5085 5635 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
5086 5636 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
5087 5637 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
5088 5638 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
5089 5639 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
5090 5640 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
5091 5641 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
5092 5642 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
5093 5643 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
5094 5644 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
5095 5645 4.571984 CAGATACATCCATTTCTGCGACAA 59.428 41.667 0.00 0.00 30.23 3.18
5096 5646 4.122046 CAGATACATCCATTTCTGCGACA 58.878 43.478 0.00 0.00 30.23 4.35
5097 5647 3.496130 CCAGATACATCCATTTCTGCGAC 59.504 47.826 0.00 0.00 35.38 5.19
5098 5648 3.387699 TCCAGATACATCCATTTCTGCGA 59.612 43.478 0.00 0.00 35.38 5.10
5099 5649 3.496130 GTCCAGATACATCCATTTCTGCG 59.504 47.826 0.00 0.00 35.38 5.18
5100 5650 3.496130 CGTCCAGATACATCCATTTCTGC 59.504 47.826 0.00 0.00 35.38 4.26
5101 5651 4.697514 ACGTCCAGATACATCCATTTCTG 58.302 43.478 0.00 0.00 36.26 3.02
5102 5652 6.672266 ATACGTCCAGATACATCCATTTCT 57.328 37.500 0.00 0.00 0.00 2.52
5103 5653 7.730364 AAATACGTCCAGATACATCCATTTC 57.270 36.000 0.00 0.00 0.00 2.17
5104 5654 9.273016 CTAAAATACGTCCAGATACATCCATTT 57.727 33.333 0.00 0.00 0.00 2.32
5105 5655 8.429641 ACTAAAATACGTCCAGATACATCCATT 58.570 33.333 0.00 0.00 0.00 3.16
5106 5656 7.963532 ACTAAAATACGTCCAGATACATCCAT 58.036 34.615 0.00 0.00 0.00 3.41
5107 5657 7.356089 ACTAAAATACGTCCAGATACATCCA 57.644 36.000 0.00 0.00 0.00 3.41
5108 5658 8.142551 AGAACTAAAATACGTCCAGATACATCC 58.857 37.037 0.00 0.00 0.00 3.51
5111 5661 9.399797 TCTAGAACTAAAATACGTCCAGATACA 57.600 33.333 0.00 0.00 0.00 2.29
5129 5679 8.962679 GTCTCGGAAATGGATATATCTAGAACT 58.037 37.037 12.42 0.00 0.00 3.01
5130 5680 8.740906 TGTCTCGGAAATGGATATATCTAGAAC 58.259 37.037 12.42 2.51 0.00 3.01
5131 5681 8.879427 TGTCTCGGAAATGGATATATCTAGAA 57.121 34.615 12.42 0.00 0.00 2.10
5132 5682 8.740906 GTTGTCTCGGAAATGGATATATCTAGA 58.259 37.037 12.42 0.00 0.00 2.43
5133 5683 8.744652 AGTTGTCTCGGAAATGGATATATCTAG 58.255 37.037 12.42 0.00 0.00 2.43
5134 5684 8.651589 AGTTGTCTCGGAAATGGATATATCTA 57.348 34.615 12.42 6.97 0.00 1.98
5135 5685 7.546250 AGTTGTCTCGGAAATGGATATATCT 57.454 36.000 12.42 0.00 0.00 1.98
5136 5686 9.877178 ATTAGTTGTCTCGGAAATGGATATATC 57.123 33.333 3.96 3.96 0.00 1.63
5138 5688 9.706691 GAATTAGTTGTCTCGGAAATGGATATA 57.293 33.333 0.00 0.00 0.00 0.86
5139 5689 7.661847 GGAATTAGTTGTCTCGGAAATGGATAT 59.338 37.037 0.00 0.00 0.00 1.63
5140 5690 6.990349 GGAATTAGTTGTCTCGGAAATGGATA 59.010 38.462 0.00 0.00 0.00 2.59
5141 5691 5.823045 GGAATTAGTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
5142 5692 5.045869 AGGAATTAGTTGTCTCGGAAATGGA 60.046 40.000 0.00 0.00 0.00 3.41
5143 5693 5.186198 AGGAATTAGTTGTCTCGGAAATGG 58.814 41.667 0.00 0.00 0.00 3.16
5144 5694 7.464178 CGTTAGGAATTAGTTGTCTCGGAAATG 60.464 40.741 0.00 0.00 0.00 2.32
5145 5695 6.534079 CGTTAGGAATTAGTTGTCTCGGAAAT 59.466 38.462 0.00 0.00 0.00 2.17
5146 5696 5.865552 CGTTAGGAATTAGTTGTCTCGGAAA 59.134 40.000 0.00 0.00 0.00 3.13
5147 5697 5.404946 CGTTAGGAATTAGTTGTCTCGGAA 58.595 41.667 0.00 0.00 0.00 4.30
5148 5698 4.142315 CCGTTAGGAATTAGTTGTCTCGGA 60.142 45.833 0.00 0.00 41.02 4.55
5149 5699 4.110482 CCGTTAGGAATTAGTTGTCTCGG 58.890 47.826 0.00 0.00 41.02 4.63
5150 5700 4.990257 TCCGTTAGGAATTAGTTGTCTCG 58.010 43.478 0.00 0.00 45.12 4.04
5164 5714 4.150359 ACACATATACTCCCTCCGTTAGG 58.850 47.826 0.00 0.00 46.09 2.69
5165 5715 5.786264 AACACATATACTCCCTCCGTTAG 57.214 43.478 0.00 0.00 0.00 2.34
5166 5716 5.895534 AGAAACACATATACTCCCTCCGTTA 59.104 40.000 0.00 0.00 0.00 3.18
5167 5717 4.715297 AGAAACACATATACTCCCTCCGTT 59.285 41.667 0.00 0.00 0.00 4.44
5168 5718 4.287552 AGAAACACATATACTCCCTCCGT 58.712 43.478 0.00 0.00 0.00 4.69
5169 5719 4.939052 AGAAACACATATACTCCCTCCG 57.061 45.455 0.00 0.00 0.00 4.63
5170 5720 5.368989 CCAAGAAACACATATACTCCCTCC 58.631 45.833 0.00 0.00 0.00 4.30
5171 5721 5.104485 ACCCAAGAAACACATATACTCCCTC 60.104 44.000 0.00 0.00 0.00 4.30
5172 5722 4.788617 ACCCAAGAAACACATATACTCCCT 59.211 41.667 0.00 0.00 0.00 4.20
5173 5723 4.881850 CACCCAAGAAACACATATACTCCC 59.118 45.833 0.00 0.00 0.00 4.30
5174 5724 4.881850 CCACCCAAGAAACACATATACTCC 59.118 45.833 0.00 0.00 0.00 3.85
5175 5725 5.497474 ACCACCCAAGAAACACATATACTC 58.503 41.667 0.00 0.00 0.00 2.59
5176 5726 5.250774 AGACCACCCAAGAAACACATATACT 59.749 40.000 0.00 0.00 0.00 2.12
5177 5727 5.497474 AGACCACCCAAGAAACACATATAC 58.503 41.667 0.00 0.00 0.00 1.47
5178 5728 5.772393 AGACCACCCAAGAAACACATATA 57.228 39.130 0.00 0.00 0.00 0.86
5179 5729 4.657814 AGACCACCCAAGAAACACATAT 57.342 40.909 0.00 0.00 0.00 1.78
5227 5777 6.789262 TGTTTGCAAGAAGAAGAAGAAGAAG 58.211 36.000 0.00 0.00 0.00 2.85
5228 5778 6.757897 TGTTTGCAAGAAGAAGAAGAAGAA 57.242 33.333 0.00 0.00 0.00 2.52
5229 5779 6.757897 TTGTTTGCAAGAAGAAGAAGAAGA 57.242 33.333 0.00 0.00 0.00 2.87
5230 5780 7.031975 ACTTTGTTTGCAAGAAGAAGAAGAAG 58.968 34.615 19.67 6.72 35.82 2.85
5231 5781 6.924111 ACTTTGTTTGCAAGAAGAAGAAGAA 58.076 32.000 19.67 0.00 35.82 2.52
5232 5782 6.515272 ACTTTGTTTGCAAGAAGAAGAAGA 57.485 33.333 19.67 0.00 35.82 2.87
5233 5783 6.808212 TCAACTTTGTTTGCAAGAAGAAGAAG 59.192 34.615 19.67 11.98 35.82 2.85
5234 5784 6.586082 GTCAACTTTGTTTGCAAGAAGAAGAA 59.414 34.615 19.67 0.93 35.82 2.52
5245 5795 2.165437 TCACCAGGTCAACTTTGTTTGC 59.835 45.455 0.00 0.00 0.00 3.68
5278 5828 5.882557 AGGCATCAATAATTGTTTCGAGAGT 59.117 36.000 0.00 0.00 0.00 3.24
5291 5842 7.230510 GGACCATGTTATGTAAGGCATCAATAA 59.769 37.037 0.00 0.00 38.94 1.40
5292 5843 6.714810 GGACCATGTTATGTAAGGCATCAATA 59.285 38.462 0.00 0.00 38.94 1.90
5293 5844 5.536161 GGACCATGTTATGTAAGGCATCAAT 59.464 40.000 0.00 0.00 38.94 2.57
5294 5845 4.887071 GGACCATGTTATGTAAGGCATCAA 59.113 41.667 0.00 0.00 38.94 2.57
5313 5864 4.585955 TCTCAGCACGATTATTAGGACC 57.414 45.455 0.00 0.00 0.00 4.46
5333 5884 6.314400 CACCCAAACATGAATTCCATTTCATC 59.686 38.462 0.00 0.00 42.90 2.92
5342 5893 4.766891 TCTTCTCCACCCAAACATGAATTC 59.233 41.667 0.00 0.00 0.00 2.17
5350 5901 2.484264 CGATGTTCTTCTCCACCCAAAC 59.516 50.000 0.00 0.00 0.00 2.93
5356 5907 4.657436 ATAGGACGATGTTCTTCTCCAC 57.343 45.455 0.00 0.00 0.00 4.02
5366 5917 0.663568 GCGCGCTTATAGGACGATGT 60.664 55.000 26.67 0.00 0.00 3.06
5371 5922 1.258197 GACAAAGCGCGCTTATAGGAC 59.742 52.381 42.98 27.29 34.84 3.85
5380 5931 1.911293 TTCATCCTGACAAAGCGCGC 61.911 55.000 26.66 26.66 0.00 6.86
5381 5932 0.729116 ATTCATCCTGACAAAGCGCG 59.271 50.000 0.00 0.00 0.00 6.86
5383 5934 6.369059 AGAATTATTCATCCTGACAAAGCG 57.631 37.500 7.74 0.00 0.00 4.68
5386 5937 8.306038 CAACCAAGAATTATTCATCCTGACAAA 58.694 33.333 7.74 0.00 0.00 2.83
5413 5964 4.044336 TGCTTGTGTGAAAAATGTCAGG 57.956 40.909 0.00 0.00 0.00 3.86
5427 5978 4.178540 CCCTCTTATGCAAATTGCTTGTG 58.821 43.478 19.34 9.84 45.31 3.33
5432 5983 1.758862 AGGCCCTCTTATGCAAATTGC 59.241 47.619 11.58 11.58 45.29 3.56
5452 6003 7.069331 ACAAACAAACAAGTAAATGGATCCTCA 59.931 33.333 14.23 0.00 0.00 3.86
5467 6018 8.391075 TGGTTTCCAATTTAACAAACAAACAA 57.609 26.923 0.00 0.00 31.52 2.83
5477 6028 8.614469 TCCAAATGAATGGTTTCCAATTTAAC 57.386 30.769 0.00 0.00 41.46 2.01
5491 6042 9.123902 TCCTGTGTAAATAGATCCAAATGAATG 57.876 33.333 0.00 0.00 0.00 2.67
5492 6043 9.347240 CTCCTGTGTAAATAGATCCAAATGAAT 57.653 33.333 0.00 0.00 0.00 2.57
5493 6044 7.775093 CCTCCTGTGTAAATAGATCCAAATGAA 59.225 37.037 0.00 0.00 0.00 2.57
5494 6045 7.127186 TCCTCCTGTGTAAATAGATCCAAATGA 59.873 37.037 0.00 0.00 0.00 2.57
5600 6151 6.133356 AGGAAACTTTTATGTTGGTCCTTCA 58.867 36.000 0.00 0.00 35.03 3.02
5618 6185 2.687935 TGCTTGTCACAGGAAAGGAAAC 59.312 45.455 0.00 0.00 0.00 2.78
5638 6205 5.523552 TCTGGACGATTAGTTGCATATTGTG 59.476 40.000 0.00 0.00 0.00 3.33
5639 6206 5.523916 GTCTGGACGATTAGTTGCATATTGT 59.476 40.000 0.00 0.00 0.00 2.71
5640 6207 5.755375 AGTCTGGACGATTAGTTGCATATTG 59.245 40.000 0.00 0.00 36.20 1.90
5641 6208 5.918608 AGTCTGGACGATTAGTTGCATATT 58.081 37.500 0.00 0.00 36.20 1.28
5642 6209 5.537300 AGTCTGGACGATTAGTTGCATAT 57.463 39.130 0.00 0.00 36.20 1.78
5643 6210 5.339008 AAGTCTGGACGATTAGTTGCATA 57.661 39.130 0.00 0.00 36.20 3.14
5644 6211 3.895232 AGTCTGGACGATTAGTTGCAT 57.105 42.857 0.00 0.00 36.20 3.96
5645 6212 3.678056 AAGTCTGGACGATTAGTTGCA 57.322 42.857 0.00 0.00 36.20 4.08
5646 6213 3.994392 TGAAAGTCTGGACGATTAGTTGC 59.006 43.478 0.00 0.00 36.20 4.17
5647 6214 6.102663 AGATGAAAGTCTGGACGATTAGTTG 58.897 40.000 0.00 0.00 36.20 3.16
5648 6215 6.287589 AGATGAAAGTCTGGACGATTAGTT 57.712 37.500 0.00 0.00 36.20 2.24
5649 6216 5.923733 AGATGAAAGTCTGGACGATTAGT 57.076 39.130 0.00 0.00 36.20 2.24
5650 6217 7.222999 GGTTTAGATGAAAGTCTGGACGATTAG 59.777 40.741 0.00 0.00 36.20 1.73
5651 6218 7.039882 GGTTTAGATGAAAGTCTGGACGATTA 58.960 38.462 0.00 0.00 36.20 1.75
5652 6219 5.875359 GGTTTAGATGAAAGTCTGGACGATT 59.125 40.000 0.00 0.00 36.20 3.34
5653 6220 5.187967 AGGTTTAGATGAAAGTCTGGACGAT 59.812 40.000 0.00 0.00 36.20 3.73
5654 6221 4.527038 AGGTTTAGATGAAAGTCTGGACGA 59.473 41.667 0.00 0.00 36.20 4.20
5655 6222 4.822026 AGGTTTAGATGAAAGTCTGGACG 58.178 43.478 0.00 0.00 36.20 4.79
5656 6223 5.794894 TGAGGTTTAGATGAAAGTCTGGAC 58.205 41.667 0.00 0.00 0.00 4.02
5657 6224 6.433847 TTGAGGTTTAGATGAAAGTCTGGA 57.566 37.500 0.00 0.00 0.00 3.86
5658 6225 7.693969 ATTTGAGGTTTAGATGAAAGTCTGG 57.306 36.000 0.00 0.00 0.00 3.86
5659 6226 9.658799 TCTATTTGAGGTTTAGATGAAAGTCTG 57.341 33.333 0.00 0.00 0.00 3.51
5673 6240 9.764363 GTTTTTCCAAAGAATCTATTTGAGGTT 57.236 29.630 0.18 0.00 39.50 3.50
5674 6241 8.367911 GGTTTTTCCAAAGAATCTATTTGAGGT 58.632 33.333 0.18 0.00 39.50 3.85
5675 6242 8.367156 TGGTTTTTCCAAAGAATCTATTTGAGG 58.633 33.333 0.18 0.00 44.12 3.86
5691 6258 1.687297 GCGGGGGTTTGGTTTTTCCA 61.687 55.000 0.00 0.00 45.60 3.53
5692 6259 1.070105 GCGGGGGTTTGGTTTTTCC 59.930 57.895 0.00 0.00 0.00 3.13
5693 6260 0.249699 CAGCGGGGGTTTGGTTTTTC 60.250 55.000 0.00 0.00 0.00 2.29
5694 6261 1.826709 CAGCGGGGGTTTGGTTTTT 59.173 52.632 0.00 0.00 0.00 1.94
5695 6262 2.802724 GCAGCGGGGGTTTGGTTTT 61.803 57.895 0.00 0.00 0.00 2.43
5696 6263 3.230990 GCAGCGGGGGTTTGGTTT 61.231 61.111 0.00 0.00 0.00 3.27
5697 6264 3.826265 ATGCAGCGGGGGTTTGGTT 62.826 57.895 0.00 0.00 0.00 3.67
5698 6265 4.299796 ATGCAGCGGGGGTTTGGT 62.300 61.111 0.00 0.00 0.00 3.67
5699 6266 3.762247 CATGCAGCGGGGGTTTGG 61.762 66.667 0.00 0.00 0.00 3.28
5700 6267 4.440127 GCATGCAGCGGGGGTTTG 62.440 66.667 14.21 0.00 0.00 2.93
5709 6276 1.023513 ACGAGAAAGAGGCATGCAGC 61.024 55.000 21.36 10.57 44.65 5.25
5710 6277 0.725686 CACGAGAAAGAGGCATGCAG 59.274 55.000 21.36 1.31 0.00 4.41
5711 6278 0.674581 CCACGAGAAAGAGGCATGCA 60.675 55.000 21.36 0.00 0.00 3.96
5712 6279 1.986575 GCCACGAGAAAGAGGCATGC 61.987 60.000 9.90 9.90 45.33 4.06
5713 6280 2.093216 GCCACGAGAAAGAGGCATG 58.907 57.895 0.00 0.00 45.33 4.06
5714 6281 4.625800 GCCACGAGAAAGAGGCAT 57.374 55.556 0.00 0.00 45.33 4.40
5716 6283 2.815647 CGGCCACGAGAAAGAGGC 60.816 66.667 2.24 0.00 45.28 4.70
5717 6284 2.815647 GCGGCCACGAGAAAGAGG 60.816 66.667 2.24 0.00 44.60 3.69
5718 6285 2.815647 GGCGGCCACGAGAAAGAG 60.816 66.667 15.62 0.00 44.60 2.85
5719 6286 4.388499 GGGCGGCCACGAGAAAGA 62.388 66.667 25.33 0.00 44.60 2.52
5731 6298 3.952628 GAGGGTGAGTTTCGGGCGG 62.953 68.421 0.00 0.00 0.00 6.13
5732 6299 2.434359 GAGGGTGAGTTTCGGGCG 60.434 66.667 0.00 0.00 0.00 6.13
5733 6300 1.671379 GTGAGGGTGAGTTTCGGGC 60.671 63.158 0.00 0.00 0.00 6.13
5734 6301 1.263356 TAGTGAGGGTGAGTTTCGGG 58.737 55.000 0.00 0.00 0.00 5.14
5735 6302 4.585162 AGATATAGTGAGGGTGAGTTTCGG 59.415 45.833 0.00 0.00 0.00 4.30
5736 6303 5.776173 AGATATAGTGAGGGTGAGTTTCG 57.224 43.478 0.00 0.00 0.00 3.46
5737 6304 7.354751 AGAAGATATAGTGAGGGTGAGTTTC 57.645 40.000 0.00 0.00 0.00 2.78
5738 6305 7.507616 CCTAGAAGATATAGTGAGGGTGAGTTT 59.492 40.741 0.00 0.00 0.00 2.66
5739 6306 7.007723 CCTAGAAGATATAGTGAGGGTGAGTT 58.992 42.308 0.00 0.00 0.00 3.01
5740 6307 6.548321 CCTAGAAGATATAGTGAGGGTGAGT 58.452 44.000 0.00 0.00 0.00 3.41
5741 6308 5.417580 GCCTAGAAGATATAGTGAGGGTGAG 59.582 48.000 0.00 0.00 0.00 3.51
5742 6309 5.162980 TGCCTAGAAGATATAGTGAGGGTGA 60.163 44.000 0.00 0.00 0.00 4.02
5743 6310 5.080337 TGCCTAGAAGATATAGTGAGGGTG 58.920 45.833 0.00 0.00 0.00 4.61
5744 6311 5.340891 TGCCTAGAAGATATAGTGAGGGT 57.659 43.478 0.00 0.00 0.00 4.34
5745 6312 6.495181 TCTTTGCCTAGAAGATATAGTGAGGG 59.505 42.308 0.00 0.00 0.00 4.30
5746 6313 7.531857 TCTTTGCCTAGAAGATATAGTGAGG 57.468 40.000 0.00 0.00 0.00 3.86
5747 6314 7.967854 CGATCTTTGCCTAGAAGATATAGTGAG 59.032 40.741 5.41 0.00 42.34 3.51
5748 6315 7.665974 TCGATCTTTGCCTAGAAGATATAGTGA 59.334 37.037 5.41 0.00 42.34 3.41
5749 6316 7.753132 GTCGATCTTTGCCTAGAAGATATAGTG 59.247 40.741 5.41 0.00 42.34 2.74
5750 6317 7.361371 CGTCGATCTTTGCCTAGAAGATATAGT 60.361 40.741 5.41 0.00 42.34 2.12
5751 6318 6.964370 CGTCGATCTTTGCCTAGAAGATATAG 59.036 42.308 5.41 2.32 42.34 1.31
5752 6319 6.653740 TCGTCGATCTTTGCCTAGAAGATATA 59.346 38.462 5.41 0.00 42.34 0.86
5753 6320 5.473846 TCGTCGATCTTTGCCTAGAAGATAT 59.526 40.000 5.41 0.00 42.34 1.63
5754 6321 4.820173 TCGTCGATCTTTGCCTAGAAGATA 59.180 41.667 5.41 0.00 42.34 1.98
5755 6322 3.632604 TCGTCGATCTTTGCCTAGAAGAT 59.367 43.478 5.15 5.15 44.32 2.40
5756 6323 3.014623 TCGTCGATCTTTGCCTAGAAGA 58.985 45.455 0.00 0.00 37.52 2.87
5757 6324 3.109619 GTCGTCGATCTTTGCCTAGAAG 58.890 50.000 0.00 0.00 0.00 2.85
5758 6325 2.159282 GGTCGTCGATCTTTGCCTAGAA 60.159 50.000 0.00 0.00 0.00 2.10
5759 6326 1.404391 GGTCGTCGATCTTTGCCTAGA 59.596 52.381 0.00 0.00 0.00 2.43
5760 6327 1.536284 GGGTCGTCGATCTTTGCCTAG 60.536 57.143 5.31 0.00 0.00 3.02
5761 6328 0.458669 GGGTCGTCGATCTTTGCCTA 59.541 55.000 5.31 0.00 0.00 3.93
5762 6329 1.218316 GGGTCGTCGATCTTTGCCT 59.782 57.895 5.31 0.00 0.00 4.75
5763 6330 0.462047 ATGGGTCGTCGATCTTTGCC 60.462 55.000 5.31 0.00 0.00 4.52
5764 6331 2.218953 TATGGGTCGTCGATCTTTGC 57.781 50.000 5.31 0.00 0.00 3.68
5765 6332 5.734855 AAAATATGGGTCGTCGATCTTTG 57.265 39.130 5.31 0.00 0.00 2.77
5766 6333 5.296035 GGAAAAATATGGGTCGTCGATCTTT 59.704 40.000 5.31 0.00 0.00 2.52
5767 6334 4.814771 GGAAAAATATGGGTCGTCGATCTT 59.185 41.667 5.31 0.00 0.00 2.40
5768 6335 4.101119 AGGAAAAATATGGGTCGTCGATCT 59.899 41.667 5.31 0.00 0.00 2.75
5769 6336 4.377897 AGGAAAAATATGGGTCGTCGATC 58.622 43.478 0.00 0.00 0.00 3.69
5770 6337 4.417426 AGGAAAAATATGGGTCGTCGAT 57.583 40.909 0.00 0.00 0.00 3.59
5771 6338 3.899052 AGGAAAAATATGGGTCGTCGA 57.101 42.857 0.00 0.00 0.00 4.20
5772 6339 4.690122 ACTAGGAAAAATATGGGTCGTCG 58.310 43.478 0.00 0.00 0.00 5.12
5773 6340 5.055144 GGACTAGGAAAAATATGGGTCGTC 58.945 45.833 0.00 0.00 0.00 4.20
5774 6341 4.472108 TGGACTAGGAAAAATATGGGTCGT 59.528 41.667 0.00 0.00 0.00 4.34
5775 6342 5.031066 TGGACTAGGAAAAATATGGGTCG 57.969 43.478 0.00 0.00 0.00 4.79
5776 6343 6.248569 TCTGGACTAGGAAAAATATGGGTC 57.751 41.667 0.00 0.00 0.00 4.46
5777 6344 5.132816 CCTCTGGACTAGGAAAAATATGGGT 59.867 44.000 0.00 0.00 36.08 4.51
5778 6345 5.456763 CCCTCTGGACTAGGAAAAATATGGG 60.457 48.000 0.00 0.00 36.08 4.00
5779 6346 5.625150 CCCTCTGGACTAGGAAAAATATGG 58.375 45.833 0.00 0.00 36.08 2.74
5780 6347 5.066593 GCCCTCTGGACTAGGAAAAATATG 58.933 45.833 0.00 0.00 36.08 1.78
5781 6348 4.202367 CGCCCTCTGGACTAGGAAAAATAT 60.202 45.833 0.00 0.00 36.08 1.28
5782 6349 3.134081 CGCCCTCTGGACTAGGAAAAATA 59.866 47.826 0.00 0.00 36.08 1.40
5783 6350 2.092914 CGCCCTCTGGACTAGGAAAAAT 60.093 50.000 0.00 0.00 36.08 1.82
5784 6351 1.278127 CGCCCTCTGGACTAGGAAAAA 59.722 52.381 0.00 0.00 36.08 1.94
5785 6352 0.902531 CGCCCTCTGGACTAGGAAAA 59.097 55.000 0.00 0.00 36.08 2.29
5786 6353 1.614241 GCGCCCTCTGGACTAGGAAA 61.614 60.000 0.00 0.00 36.08 3.13
5787 6354 2.058595 GCGCCCTCTGGACTAGGAA 61.059 63.158 0.00 0.00 36.08 3.36
5788 6355 2.442272 GCGCCCTCTGGACTAGGA 60.442 66.667 0.00 0.00 36.08 2.94
5789 6356 3.541713 GGCGCCCTCTGGACTAGG 61.542 72.222 18.11 0.00 0.00 3.02
5790 6357 0.827925 TATGGCGCCCTCTGGACTAG 60.828 60.000 26.77 0.00 0.00 2.57
5791 6358 0.178932 ATATGGCGCCCTCTGGACTA 60.179 55.000 26.77 0.73 0.00 2.59
5792 6359 1.460305 ATATGGCGCCCTCTGGACT 60.460 57.895 26.77 0.46 0.00 3.85
5793 6360 1.302033 CATATGGCGCCCTCTGGAC 60.302 63.158 26.77 0.00 0.00 4.02
5794 6361 3.150949 CATATGGCGCCCTCTGGA 58.849 61.111 26.77 3.54 0.00 3.86
5795 6362 2.670934 GCATATGGCGCCCTCTGG 60.671 66.667 26.77 11.00 0.00 3.86
5804 6371 7.031226 TGAGAAGACTAATTTTGCATATGGC 57.969 36.000 4.56 0.00 45.13 4.40
5805 6372 7.594015 GCATGAGAAGACTAATTTTGCATATGG 59.406 37.037 4.56 0.00 0.00 2.74
5806 6373 8.132995 TGCATGAGAAGACTAATTTTGCATATG 58.867 33.333 0.00 0.00 0.00 1.78
5807 6374 8.229253 TGCATGAGAAGACTAATTTTGCATAT 57.771 30.769 0.00 0.00 0.00 1.78
5808 6375 7.628769 TGCATGAGAAGACTAATTTTGCATA 57.371 32.000 0.00 0.00 0.00 3.14
5809 6376 6.519679 TGCATGAGAAGACTAATTTTGCAT 57.480 33.333 0.00 0.00 0.00 3.96
5810 6377 5.963176 TGCATGAGAAGACTAATTTTGCA 57.037 34.783 0.00 0.00 0.00 4.08
5811 6378 9.604626 GTATATGCATGAGAAGACTAATTTTGC 57.395 33.333 10.16 0.00 0.00 3.68
5817 6384 9.314133 AGGTATGTATATGCATGAGAAGACTAA 57.686 33.333 15.72 0.00 0.00 2.24
5818 6385 8.885693 AGGTATGTATATGCATGAGAAGACTA 57.114 34.615 15.72 0.00 0.00 2.59
5819 6386 7.789202 AGGTATGTATATGCATGAGAAGACT 57.211 36.000 15.72 0.00 0.00 3.24
5820 6387 7.976734 GGTAGGTATGTATATGCATGAGAAGAC 59.023 40.741 15.72 5.27 0.00 3.01
5821 6388 7.673926 TGGTAGGTATGTATATGCATGAGAAGA 59.326 37.037 15.72 0.00 0.00 2.87
5822 6389 7.840931 TGGTAGGTATGTATATGCATGAGAAG 58.159 38.462 15.72 0.00 0.00 2.85
5823 6390 7.093333 CCTGGTAGGTATGTATATGCATGAGAA 60.093 40.741 15.72 0.00 0.00 2.87
5824 6391 6.381133 CCTGGTAGGTATGTATATGCATGAGA 59.619 42.308 15.72 0.00 0.00 3.27
5825 6392 6.577103 CCTGGTAGGTATGTATATGCATGAG 58.423 44.000 15.72 1.78 0.00 2.90
5826 6393 5.104941 GCCTGGTAGGTATGTATATGCATGA 60.105 44.000 15.72 0.00 37.80 3.07
5827 6394 5.118990 GCCTGGTAGGTATGTATATGCATG 58.881 45.833 15.72 0.00 37.80 4.06
5828 6395 4.782691 TGCCTGGTAGGTATGTATATGCAT 59.217 41.667 11.25 11.25 37.80 3.96
5829 6396 4.164204 TGCCTGGTAGGTATGTATATGCA 58.836 43.478 0.00 0.00 37.80 3.96
5830 6397 4.819105 TGCCTGGTAGGTATGTATATGC 57.181 45.455 0.00 0.00 37.80 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.