Multiple sequence alignment - TraesCS4B01G002300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G002300 chr4B 100.000 5103 0 0 1 5103 1247341 1242239 0.000000e+00 9424.0
1 TraesCS4B01G002300 chr4B 78.911 863 155 22 2768 3618 431796128 431795281 1.240000e-155 560.0
2 TraesCS4B01G002300 chr4B 75.097 775 133 39 2887 3619 638987633 638988389 1.780000e-79 307.0
3 TraesCS4B01G002300 chr4D 92.470 3891 129 40 531 4292 627831 631686 0.000000e+00 5411.0
4 TraesCS4B01G002300 chr4D 78.953 860 160 17 2768 3618 349190359 349189512 2.670000e-157 566.0
5 TraesCS4B01G002300 chr4D 80.029 691 89 30 4427 5103 631715 632370 2.780000e-127 466.0
6 TraesCS4B01G002300 chr4D 90.426 94 6 1 188 278 35665574 35665481 2.500000e-23 121.0
7 TraesCS4B01G002300 chr4D 92.045 88 4 1 193 277 119749607 119749694 2.500000e-23 121.0
8 TraesCS4B01G002300 chr4A 92.159 3405 149 43 962 4296 898882 902238 0.000000e+00 4700.0
9 TraesCS4B01G002300 chr4A 79.167 864 151 24 2768 3618 115788280 115789127 5.730000e-159 571.0
10 TraesCS4B01G002300 chr4A 86.382 492 53 8 4393 4879 902311 902793 4.530000e-145 525.0
11 TraesCS4B01G002300 chr4A 87.744 359 34 10 276 625 895037 895394 1.320000e-110 411.0
12 TraesCS4B01G002300 chr4A 91.358 162 14 0 689 850 898546 898707 6.650000e-54 222.0
13 TraesCS4B01G002300 chr4A 93.902 82 5 0 196 277 579525773 579525854 1.930000e-24 124.0
14 TraesCS4B01G002300 chr4A 92.941 85 2 2 196 277 533437730 533437647 2.500000e-23 121.0
15 TraesCS4B01G002300 chr4A 96.154 52 2 0 715 766 898135 898186 9.100000e-13 86.1
16 TraesCS4B01G002300 chr4A 100.000 33 0 0 945 977 898847 898879 1.530000e-05 62.1
17 TraesCS4B01G002300 chr3A 86.484 910 108 10 2728 3628 186041152 186040249 0.000000e+00 985.0
18 TraesCS4B01G002300 chr3A 74.062 960 220 23 1236 2176 186042596 186041647 2.900000e-97 366.0
19 TraesCS4B01G002300 chr3D 86.264 910 110 9 2728 3628 159786799 159785896 0.000000e+00 974.0
20 TraesCS4B01G002300 chr3D 73.950 952 227 17 1237 2176 159788236 159787294 1.040000e-96 364.0
21 TraesCS4B01G002300 chr3B 85.604 910 116 9 2728 3628 236496463 236495560 0.000000e+00 941.0
22 TraesCS4B01G002300 chr3B 73.767 953 227 19 1237 2176 236497900 236496958 2.260000e-93 353.0
23 TraesCS4B01G002300 chr5A 84.521 814 119 6 2808 3619 540053618 540054426 0.000000e+00 798.0
24 TraesCS4B01G002300 chr5A 75.452 387 73 19 3247 3622 678082731 678082356 8.790000e-38 169.0
25 TraesCS4B01G002300 chr5A 90.110 91 6 1 190 277 477706690 477706780 1.160000e-21 115.0
26 TraesCS4B01G002300 chr1A 91.954 87 4 1 195 278 551487770 551487856 8.980000e-23 119.0
27 TraesCS4B01G002300 chr1A 91.860 86 4 1 195 277 97264943 97265028 3.230000e-22 117.0
28 TraesCS4B01G002300 chr1A 85.227 88 11 2 4318 4404 484331215 484331301 7.040000e-14 89.8
29 TraesCS4B01G002300 chr2A 91.011 89 4 2 192 277 694958723 694958636 3.230000e-22 117.0
30 TraesCS4B01G002300 chr1B 91.860 86 4 1 196 278 354228023 354227938 3.230000e-22 117.0
31 TraesCS4B01G002300 chr7D 79.048 105 19 3 4776 4879 54262273 54262171 9.170000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G002300 chr4B 1242239 1247341 5102 True 9424.000000 9424 100.0000 1 5103 1 chr4B.!!$R1 5102
1 TraesCS4B01G002300 chr4B 431795281 431796128 847 True 560.000000 560 78.9110 2768 3618 1 chr4B.!!$R2 850
2 TraesCS4B01G002300 chr4B 638987633 638988389 756 False 307.000000 307 75.0970 2887 3619 1 chr4B.!!$F1 732
3 TraesCS4B01G002300 chr4D 627831 632370 4539 False 2938.500000 5411 86.2495 531 5103 2 chr4D.!!$F2 4572
4 TraesCS4B01G002300 chr4D 349189512 349190359 847 True 566.000000 566 78.9530 2768 3618 1 chr4D.!!$R2 850
5 TraesCS4B01G002300 chr4A 895037 902793 7756 False 1001.033333 4700 92.2995 276 4879 6 chr4A.!!$F3 4603
6 TraesCS4B01G002300 chr4A 115788280 115789127 847 False 571.000000 571 79.1670 2768 3618 1 chr4A.!!$F1 850
7 TraesCS4B01G002300 chr3A 186040249 186042596 2347 True 675.500000 985 80.2730 1236 3628 2 chr3A.!!$R1 2392
8 TraesCS4B01G002300 chr3D 159785896 159788236 2340 True 669.000000 974 80.1070 1237 3628 2 chr3D.!!$R1 2391
9 TraesCS4B01G002300 chr3B 236495560 236497900 2340 True 647.000000 941 79.6855 1237 3628 2 chr3B.!!$R1 2391
10 TraesCS4B01G002300 chr5A 540053618 540054426 808 False 798.000000 798 84.5210 2808 3619 1 chr5A.!!$F2 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.178973 AAGGAAGGGACCCAAAACGG 60.179 55.0 14.60 0.0 0.00 4.44 F
481 482 0.325296 AAGTGATGAGGCGGGGTAGA 60.325 55.0 0.00 0.0 0.00 2.59 F
942 4094 0.670854 GTCGTTGGTCAAGCTCCCTC 60.671 60.0 0.00 0.0 0.00 4.30 F
2006 5268 0.104855 GCCCGTCAGCATCTATGACA 59.895 55.0 6.86 0.0 45.96 3.58 F
3817 7121 0.178068 CCACCGGACGATGATCCTTT 59.822 55.0 9.46 0.0 36.52 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1126 4331 0.175760 CCATGATGGAGGAACGACGT 59.824 55.000 5.27 0.00 40.96 4.34 R
1423 4679 0.333993 AGGTGTAGGCGGTCTCCTTA 59.666 55.000 0.00 0.00 37.66 2.69 R
2705 5979 0.038166 ATGTTGGGGTTCAGCGTCAT 59.962 50.000 0.00 0.00 0.00 3.06 R
3823 7127 1.001597 GACGAGACGTGAAGTGAAGGT 60.002 52.381 0.00 0.00 41.37 3.50 R
4807 8212 0.034186 TCCTTAGGGGCATGTGCAAG 60.034 55.000 7.36 2.01 44.36 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 4.376340 AAATCAATCAAGCATCGAACCC 57.624 40.909 0.00 0.00 0.00 4.11
80 81 2.488204 TCAATCAAGCATCGAACCCA 57.512 45.000 0.00 0.00 0.00 4.51
81 82 3.003394 TCAATCAAGCATCGAACCCAT 57.997 42.857 0.00 0.00 0.00 4.00
82 83 2.684374 TCAATCAAGCATCGAACCCATG 59.316 45.455 0.00 0.00 0.00 3.66
83 84 2.684374 CAATCAAGCATCGAACCCATGA 59.316 45.455 0.00 0.00 0.00 3.07
84 85 2.488204 TCAAGCATCGAACCCATGAA 57.512 45.000 0.00 0.00 0.00 2.57
85 86 2.083774 TCAAGCATCGAACCCATGAAC 58.916 47.619 0.00 0.00 0.00 3.18
86 87 1.086696 AAGCATCGAACCCATGAACG 58.913 50.000 0.00 0.00 0.00 3.95
87 88 0.744414 AGCATCGAACCCATGAACGG 60.744 55.000 0.00 0.00 0.00 4.44
94 95 2.671070 CCCATGAACGGGCTGTCT 59.329 61.111 0.00 0.00 40.07 3.41
95 96 1.746615 CCCATGAACGGGCTGTCTG 60.747 63.158 0.00 0.00 40.07 3.51
96 97 1.296392 CCATGAACGGGCTGTCTGA 59.704 57.895 0.00 0.00 0.00 3.27
97 98 0.321564 CCATGAACGGGCTGTCTGAA 60.322 55.000 0.00 0.00 0.00 3.02
98 99 1.522668 CATGAACGGGCTGTCTGAAA 58.477 50.000 0.00 0.00 0.00 2.69
99 100 1.879380 CATGAACGGGCTGTCTGAAAA 59.121 47.619 0.00 0.00 0.00 2.29
100 101 1.305201 TGAACGGGCTGTCTGAAAAC 58.695 50.000 0.00 0.00 0.00 2.43
101 102 0.591659 GAACGGGCTGTCTGAAAACC 59.408 55.000 0.00 0.00 0.00 3.27
102 103 0.182775 AACGGGCTGTCTGAAAACCT 59.817 50.000 0.00 0.00 0.00 3.50
103 104 0.535102 ACGGGCTGTCTGAAAACCTG 60.535 55.000 0.00 0.00 0.00 4.00
104 105 0.250295 CGGGCTGTCTGAAAACCTGA 60.250 55.000 0.00 0.00 0.00 3.86
105 106 1.528129 GGGCTGTCTGAAAACCTGAG 58.472 55.000 0.00 0.00 0.00 3.35
106 107 0.877743 GGCTGTCTGAAAACCTGAGC 59.122 55.000 0.00 0.00 0.00 4.26
107 108 0.877743 GCTGTCTGAAAACCTGAGCC 59.122 55.000 0.00 0.00 0.00 4.70
108 109 1.151668 CTGTCTGAAAACCTGAGCCG 58.848 55.000 0.00 0.00 0.00 5.52
109 110 0.250295 TGTCTGAAAACCTGAGCCGG 60.250 55.000 0.00 0.00 0.00 6.13
110 111 0.955919 GTCTGAAAACCTGAGCCGGG 60.956 60.000 2.18 0.00 35.68 5.73
111 112 1.125093 TCTGAAAACCTGAGCCGGGA 61.125 55.000 2.18 0.00 33.36 5.14
112 113 0.674895 CTGAAAACCTGAGCCGGGAG 60.675 60.000 2.18 0.00 33.36 4.30
113 114 2.034221 AAAACCTGAGCCGGGAGC 59.966 61.111 2.18 0.00 44.25 4.70
114 115 3.569200 AAAACCTGAGCCGGGAGCC 62.569 63.158 2.18 0.00 45.47 4.70
118 119 4.154347 CTGAGCCGGGAGCCTCAC 62.154 72.222 2.18 0.00 45.47 3.51
124 125 4.452733 CGGGAGCCTCACCGGTTC 62.453 72.222 2.97 0.00 46.08 3.62
125 126 4.452733 GGGAGCCTCACCGGTTCG 62.453 72.222 2.97 0.00 43.42 3.95
126 127 3.379445 GGAGCCTCACCGGTTCGA 61.379 66.667 2.97 0.00 43.42 3.71
127 128 2.722201 GGAGCCTCACCGGTTCGAT 61.722 63.158 2.97 0.00 43.42 3.59
128 129 1.227002 GAGCCTCACCGGTTCGATC 60.227 63.158 2.97 0.00 33.09 3.69
129 130 1.945354 GAGCCTCACCGGTTCGATCA 61.945 60.000 2.97 0.00 33.09 2.92
130 131 1.810030 GCCTCACCGGTTCGATCAC 60.810 63.158 2.97 0.00 34.25 3.06
131 132 1.890894 CCTCACCGGTTCGATCACT 59.109 57.895 2.97 0.00 0.00 3.41
132 133 0.458543 CCTCACCGGTTCGATCACTG 60.459 60.000 2.97 0.00 0.00 3.66
133 134 1.078759 CTCACCGGTTCGATCACTGC 61.079 60.000 2.97 0.00 0.00 4.40
134 135 2.126071 ACCGGTTCGATCACTGCG 60.126 61.111 0.00 0.00 0.00 5.18
135 136 3.554692 CCGGTTCGATCACTGCGC 61.555 66.667 0.00 0.00 0.00 6.09
136 137 3.902063 CGGTTCGATCACTGCGCG 61.902 66.667 0.00 0.00 0.00 6.86
137 138 3.554692 GGTTCGATCACTGCGCGG 61.555 66.667 16.39 16.39 0.00 6.46
138 139 3.554692 GTTCGATCACTGCGCGGG 61.555 66.667 22.44 10.07 0.00 6.13
139 140 4.063967 TTCGATCACTGCGCGGGT 62.064 61.111 22.44 10.80 0.00 5.28
140 141 2.702788 TTCGATCACTGCGCGGGTA 61.703 57.895 22.44 8.33 0.00 3.69
141 142 2.011741 TTCGATCACTGCGCGGGTAT 62.012 55.000 22.44 13.27 0.00 2.73
142 143 1.591594 CGATCACTGCGCGGGTATT 60.592 57.895 22.44 1.68 0.00 1.89
143 144 1.151777 CGATCACTGCGCGGGTATTT 61.152 55.000 22.44 0.00 0.00 1.40
144 145 1.014352 GATCACTGCGCGGGTATTTT 58.986 50.000 22.44 0.00 0.00 1.82
145 146 2.206750 GATCACTGCGCGGGTATTTTA 58.793 47.619 22.44 0.00 0.00 1.52
146 147 2.096220 TCACTGCGCGGGTATTTTAA 57.904 45.000 22.44 0.00 0.00 1.52
147 148 2.424557 TCACTGCGCGGGTATTTTAAA 58.575 42.857 22.44 0.00 0.00 1.52
148 149 2.160022 TCACTGCGCGGGTATTTTAAAC 59.840 45.455 22.44 0.00 0.00 2.01
149 150 2.160813 CACTGCGCGGGTATTTTAAACT 59.839 45.455 22.44 0.00 0.00 2.66
150 151 3.371591 CACTGCGCGGGTATTTTAAACTA 59.628 43.478 22.44 0.00 0.00 2.24
151 152 4.034742 CACTGCGCGGGTATTTTAAACTAT 59.965 41.667 22.44 0.00 0.00 2.12
152 153 4.034742 ACTGCGCGGGTATTTTAAACTATG 59.965 41.667 22.44 0.00 0.00 2.23
153 154 4.190001 TGCGCGGGTATTTTAAACTATGA 58.810 39.130 8.83 0.00 0.00 2.15
154 155 4.634883 TGCGCGGGTATTTTAAACTATGAA 59.365 37.500 8.83 0.00 0.00 2.57
155 156 5.202640 GCGCGGGTATTTTAAACTATGAAG 58.797 41.667 8.83 0.00 0.00 3.02
156 157 5.202640 CGCGGGTATTTTAAACTATGAAGC 58.797 41.667 0.00 0.00 0.00 3.86
157 158 5.220700 CGCGGGTATTTTAAACTATGAAGCA 60.221 40.000 0.00 0.00 0.00 3.91
158 159 5.969435 GCGGGTATTTTAAACTATGAAGCAC 59.031 40.000 0.00 0.00 0.00 4.40
159 160 6.403855 GCGGGTATTTTAAACTATGAAGCACA 60.404 38.462 0.00 0.00 0.00 4.57
160 161 6.964934 CGGGTATTTTAAACTATGAAGCACAC 59.035 38.462 0.00 0.00 0.00 3.82
161 162 7.361371 CGGGTATTTTAAACTATGAAGCACACA 60.361 37.037 0.00 0.00 0.00 3.72
162 163 8.301002 GGGTATTTTAAACTATGAAGCACACAA 58.699 33.333 0.00 0.00 0.00 3.33
163 164 9.341899 GGTATTTTAAACTATGAAGCACACAAG 57.658 33.333 0.00 0.00 0.00 3.16
164 165 9.341899 GTATTTTAAACTATGAAGCACACAAGG 57.658 33.333 0.00 0.00 0.00 3.61
165 166 7.575414 TTTTAAACTATGAAGCACACAAGGA 57.425 32.000 0.00 0.00 0.00 3.36
166 167 7.575414 TTTAAACTATGAAGCACACAAGGAA 57.425 32.000 0.00 0.00 0.00 3.36
167 168 5.695851 AAACTATGAAGCACACAAGGAAG 57.304 39.130 0.00 0.00 0.00 3.46
168 169 3.679389 ACTATGAAGCACACAAGGAAGG 58.321 45.455 0.00 0.00 0.00 3.46
169 170 1.915141 ATGAAGCACACAAGGAAGGG 58.085 50.000 0.00 0.00 0.00 3.95
170 171 0.843309 TGAAGCACACAAGGAAGGGA 59.157 50.000 0.00 0.00 0.00 4.20
171 172 1.239347 GAAGCACACAAGGAAGGGAC 58.761 55.000 0.00 0.00 0.00 4.46
172 173 0.178990 AAGCACACAAGGAAGGGACC 60.179 55.000 0.00 0.00 0.00 4.46
173 174 1.603739 GCACACAAGGAAGGGACCC 60.604 63.158 0.59 0.59 0.00 4.46
174 175 1.843421 CACACAAGGAAGGGACCCA 59.157 57.895 14.60 0.00 0.00 4.51
175 176 0.184933 CACACAAGGAAGGGACCCAA 59.815 55.000 14.60 0.00 0.00 4.12
176 177 0.930726 ACACAAGGAAGGGACCCAAA 59.069 50.000 14.60 0.00 0.00 3.28
177 178 1.289530 ACACAAGGAAGGGACCCAAAA 59.710 47.619 14.60 0.00 0.00 2.44
178 179 1.686587 CACAAGGAAGGGACCCAAAAC 59.313 52.381 14.60 0.00 0.00 2.43
179 180 0.958822 CAAGGAAGGGACCCAAAACG 59.041 55.000 14.60 0.00 0.00 3.60
180 181 0.178973 AAGGAAGGGACCCAAAACGG 60.179 55.000 14.60 0.00 0.00 4.44
181 182 2.273179 GGAAGGGACCCAAAACGGC 61.273 63.158 14.60 0.00 0.00 5.68
182 183 2.596338 AAGGGACCCAAAACGGCG 60.596 61.111 14.60 4.80 0.00 6.46
183 184 3.122727 AAGGGACCCAAAACGGCGA 62.123 57.895 16.62 0.00 0.00 5.54
184 185 3.053896 GGGACCCAAAACGGCGAG 61.054 66.667 16.62 0.00 0.00 5.03
185 186 3.733960 GGACCCAAAACGGCGAGC 61.734 66.667 16.62 0.00 0.00 5.03
186 187 2.668550 GACCCAAAACGGCGAGCT 60.669 61.111 16.62 0.00 0.00 4.09
187 188 2.668550 ACCCAAAACGGCGAGCTC 60.669 61.111 16.62 2.73 0.00 4.09
188 189 2.358737 CCCAAAACGGCGAGCTCT 60.359 61.111 16.62 0.00 0.00 4.09
189 190 1.079405 CCCAAAACGGCGAGCTCTA 60.079 57.895 16.62 0.00 0.00 2.43
190 191 0.462047 CCCAAAACGGCGAGCTCTAT 60.462 55.000 16.62 0.00 0.00 1.98
191 192 0.931005 CCAAAACGGCGAGCTCTATC 59.069 55.000 16.62 0.45 0.00 2.08
192 193 1.471676 CCAAAACGGCGAGCTCTATCT 60.472 52.381 16.62 0.00 0.00 1.98
193 194 2.223735 CCAAAACGGCGAGCTCTATCTA 60.224 50.000 16.62 0.00 0.00 1.98
194 195 2.778187 AAACGGCGAGCTCTATCTAC 57.222 50.000 16.62 0.00 0.00 2.59
195 196 1.970092 AACGGCGAGCTCTATCTACT 58.030 50.000 16.62 0.00 0.00 2.57
196 197 2.835580 ACGGCGAGCTCTATCTACTA 57.164 50.000 16.62 0.00 0.00 1.82
197 198 2.415776 ACGGCGAGCTCTATCTACTAC 58.584 52.381 16.62 0.00 0.00 2.73
198 199 2.037511 ACGGCGAGCTCTATCTACTACT 59.962 50.000 16.62 0.00 0.00 2.57
199 200 2.669434 CGGCGAGCTCTATCTACTACTC 59.331 54.545 12.85 0.00 0.00 2.59
200 201 3.004862 GGCGAGCTCTATCTACTACTCC 58.995 54.545 12.85 0.00 0.00 3.85
201 202 3.004862 GCGAGCTCTATCTACTACTCCC 58.995 54.545 12.85 0.00 0.00 4.30
202 203 3.307199 GCGAGCTCTATCTACTACTCCCT 60.307 52.174 12.85 0.00 0.00 4.20
203 204 4.501071 CGAGCTCTATCTACTACTCCCTC 58.499 52.174 12.85 0.00 0.00 4.30
204 205 4.622220 CGAGCTCTATCTACTACTCCCTCC 60.622 54.167 12.85 0.00 0.00 4.30
205 206 3.262405 AGCTCTATCTACTACTCCCTCCG 59.738 52.174 0.00 0.00 0.00 4.63
206 207 3.008266 GCTCTATCTACTACTCCCTCCGT 59.992 52.174 0.00 0.00 0.00 4.69
207 208 4.222588 GCTCTATCTACTACTCCCTCCGTA 59.777 50.000 0.00 0.00 0.00 4.02
208 209 5.279910 GCTCTATCTACTACTCCCTCCGTAA 60.280 48.000 0.00 0.00 0.00 3.18
209 210 6.743773 GCTCTATCTACTACTCCCTCCGTAAA 60.744 46.154 0.00 0.00 0.00 2.01
210 211 6.529220 TCTATCTACTACTCCCTCCGTAAAC 58.471 44.000 0.00 0.00 0.00 2.01
211 212 4.851639 TCTACTACTCCCTCCGTAAACT 57.148 45.455 0.00 0.00 0.00 2.66
212 213 5.957771 TCTACTACTCCCTCCGTAAACTA 57.042 43.478 0.00 0.00 0.00 2.24
213 214 6.506538 TCTACTACTCCCTCCGTAAACTAT 57.493 41.667 0.00 0.00 0.00 2.12
214 215 7.618019 TCTACTACTCCCTCCGTAAACTATA 57.382 40.000 0.00 0.00 0.00 1.31
215 216 8.034313 TCTACTACTCCCTCCGTAAACTATAA 57.966 38.462 0.00 0.00 0.00 0.98
216 217 8.153550 TCTACTACTCCCTCCGTAAACTATAAG 58.846 40.741 0.00 0.00 0.00 1.73
217 218 6.904626 ACTACTCCCTCCGTAAACTATAAGA 58.095 40.000 0.00 0.00 0.00 2.10
218 219 6.997476 ACTACTCCCTCCGTAAACTATAAGAG 59.003 42.308 0.00 0.00 0.00 2.85
219 220 5.764432 ACTCCCTCCGTAAACTATAAGAGT 58.236 41.667 0.00 0.00 41.56 3.24
220 221 5.593502 ACTCCCTCCGTAAACTATAAGAGTG 59.406 44.000 0.00 0.00 38.87 3.51
221 222 5.513233 TCCCTCCGTAAACTATAAGAGTGT 58.487 41.667 0.00 0.00 38.87 3.55
222 223 5.954150 TCCCTCCGTAAACTATAAGAGTGTT 59.046 40.000 0.00 0.00 38.87 3.32
223 224 6.438425 TCCCTCCGTAAACTATAAGAGTGTTT 59.562 38.462 0.00 0.00 38.87 2.83
224 225 7.615365 TCCCTCCGTAAACTATAAGAGTGTTTA 59.385 37.037 0.00 0.00 38.87 2.01
225 226 7.919621 CCCTCCGTAAACTATAAGAGTGTTTAG 59.080 40.741 0.00 0.00 38.87 1.85
226 227 8.680903 CCTCCGTAAACTATAAGAGTGTTTAGA 58.319 37.037 0.00 0.00 38.87 2.10
309 310 7.890655 ACTCCAATAGCTCCTATCAAAAACTTT 59.109 33.333 0.00 0.00 0.00 2.66
381 382 9.555727 TCCGTCAAATATCTTTCCCTAAAATAG 57.444 33.333 0.00 0.00 0.00 1.73
435 436 1.603172 CCCACAAGTCTGAGACACGAC 60.603 57.143 15.86 0.00 34.60 4.34
437 438 1.022735 ACAAGTCTGAGACACGACGT 58.977 50.000 15.86 0.00 34.60 4.34
444 445 1.080705 GAGACACGACGTTGGGAGG 60.081 63.158 13.27 0.00 0.00 4.30
478 479 2.990479 GAAGTGATGAGGCGGGGT 59.010 61.111 0.00 0.00 0.00 4.95
481 482 0.325296 AAGTGATGAGGCGGGGTAGA 60.325 55.000 0.00 0.00 0.00 2.59
542 543 1.065109 GGTTGTTGTTCGGTGGTGC 59.935 57.895 0.00 0.00 0.00 5.01
555 556 3.056328 GGTGCAGGACCGCTTTCC 61.056 66.667 0.00 6.14 34.02 3.13
600 614 5.537674 AGCCTGCCAAATTATATGGAAAGAG 59.462 40.000 0.00 0.00 40.56 2.85
601 615 5.776744 CCTGCCAAATTATATGGAAAGAGC 58.223 41.667 0.00 0.00 40.56 4.09
625 639 2.076863 CTTGCCGTAAAAGTGAGAGGG 58.923 52.381 0.00 0.00 0.00 4.30
633 669 1.061546 AAAGTGAGAGGGGCCGTAAA 58.938 50.000 0.00 0.00 0.00 2.01
663 699 3.161866 GGGTTTATGGGAGCTGTTGAAA 58.838 45.455 0.00 0.00 0.00 2.69
721 3826 8.870075 AGTTTATTCAAGATTAGGAAAGCTGT 57.130 30.769 0.00 0.00 30.03 4.40
743 3848 3.620488 TGGAGTTGCTTCAAGTGACTTT 58.380 40.909 0.00 0.00 0.00 2.66
744 3849 3.378112 TGGAGTTGCTTCAAGTGACTTTG 59.622 43.478 0.00 0.00 0.00 2.77
782 3892 1.004799 TTGTGTTGCATGGCATGGC 60.005 52.632 27.48 19.51 38.76 4.40
783 3893 1.755393 TTGTGTTGCATGGCATGGCA 61.755 50.000 27.48 25.52 38.76 4.92
785 3895 1.087202 GTGTTGCATGGCATGGCATG 61.087 55.000 42.44 42.44 40.17 4.06
786 3896 1.522806 GTTGCATGGCATGGCATGG 60.523 57.895 44.47 32.20 40.17 3.66
787 3897 1.990614 TTGCATGGCATGGCATGGT 60.991 52.632 44.47 23.10 40.17 3.55
788 3898 1.962321 TTGCATGGCATGGCATGGTC 61.962 55.000 44.47 34.26 40.17 4.02
929 4081 2.500369 GCTGCATGCACGTCGTTG 60.500 61.111 18.46 6.37 42.31 4.10
930 4082 2.174107 CTGCATGCACGTCGTTGG 59.826 61.111 18.46 0.00 0.00 3.77
931 4083 2.590291 TGCATGCACGTCGTTGGT 60.590 55.556 18.46 0.00 0.00 3.67
932 4084 2.173382 GCATGCACGTCGTTGGTC 59.827 61.111 14.21 0.00 0.00 4.02
933 4085 2.603247 GCATGCACGTCGTTGGTCA 61.603 57.895 14.21 0.00 0.00 4.02
934 4086 1.938125 CATGCACGTCGTTGGTCAA 59.062 52.632 0.00 0.00 0.00 3.18
936 4088 1.841663 ATGCACGTCGTTGGTCAAGC 61.842 55.000 0.00 0.00 0.00 4.01
937 4089 2.244651 GCACGTCGTTGGTCAAGCT 61.245 57.895 0.00 0.00 0.00 3.74
939 4091 1.300697 ACGTCGTTGGTCAAGCTCC 60.301 57.895 0.00 0.00 0.00 4.70
941 4093 1.371558 GTCGTTGGTCAAGCTCCCT 59.628 57.895 0.00 0.00 0.00 4.20
942 4094 0.670854 GTCGTTGGTCAAGCTCCCTC 60.671 60.000 0.00 0.00 0.00 4.30
1062 4267 1.081174 TCCCTCCTCAACATCCTTCCT 59.919 52.381 0.00 0.00 0.00 3.36
1068 4273 3.200825 TCCTCAACATCCTTCCTTCCATC 59.799 47.826 0.00 0.00 0.00 3.51
1071 4276 3.528905 TCAACATCCTTCCTTCCATCCAT 59.471 43.478 0.00 0.00 0.00 3.41
1078 4283 7.624879 ACATCCTTCCTTCCATCCATTTTAAAT 59.375 33.333 0.00 0.00 0.00 1.40
1080 4285 8.448068 TCCTTCCTTCCATCCATTTTAAATTT 57.552 30.769 0.00 0.00 0.00 1.82
1081 4286 9.554053 TCCTTCCTTCCATCCATTTTAAATTTA 57.446 29.630 0.00 0.00 0.00 1.40
1122 4327 2.823593 CCATCGCCGTGATTGCCA 60.824 61.111 0.00 0.00 34.13 4.92
1123 4328 2.404789 CATCGCCGTGATTGCCAC 59.595 61.111 0.00 0.00 42.30 5.01
1131 4336 1.700029 GTGATTGCCACGTACGTCG 59.300 57.895 19.94 14.07 46.00 5.12
1200 4453 2.432628 CCTCTTGACGACGGTGGC 60.433 66.667 0.00 0.00 0.00 5.01
1201 4454 2.432628 CTCTTGACGACGGTGGCC 60.433 66.667 0.00 0.00 0.00 5.36
1202 4455 2.915659 TCTTGACGACGGTGGCCT 60.916 61.111 3.32 0.00 0.00 5.19
1203 4456 2.030562 CTTGACGACGGTGGCCTT 59.969 61.111 3.32 0.00 0.00 4.35
1204 4457 2.027625 CTTGACGACGGTGGCCTTC 61.028 63.158 3.32 0.00 0.00 3.46
1381 4637 4.410743 GACGTGTCGGACCCGTCC 62.411 72.222 28.09 14.64 43.77 4.79
1451 4707 2.590114 GCCTACACCTTCCCCGTGT 61.590 63.158 0.00 0.00 46.03 4.49
1498 4754 3.771160 CACTTCTACCCGGCGGCT 61.771 66.667 23.20 10.39 0.00 5.52
1535 4791 1.618837 CCGACCACTTCTTCTTCTCCA 59.381 52.381 0.00 0.00 0.00 3.86
1539 4795 4.502962 GACCACTTCTTCTTCTCCATCAG 58.497 47.826 0.00 0.00 0.00 2.90
1678 4940 0.609131 CCCTCAAATTCACGCCCACT 60.609 55.000 0.00 0.00 0.00 4.00
1690 4952 1.597797 CGCCCACTGCCATGAACAAT 61.598 55.000 0.00 0.00 36.24 2.71
1825 5087 1.078426 GCAGACCATGTACCGGCTT 60.078 57.895 0.00 0.00 0.00 4.35
1853 5115 3.161450 GCTCCTACATCCCGCCCA 61.161 66.667 0.00 0.00 0.00 5.36
1871 5133 3.691342 CCAACGACTCCGGGCTGA 61.691 66.667 0.00 0.00 40.78 4.26
2002 5264 2.029666 GCGCCCGTCAGCATCTAT 59.970 61.111 0.00 0.00 0.00 1.98
2006 5268 0.104855 GCCCGTCAGCATCTATGACA 59.895 55.000 6.86 0.00 45.96 3.58
2353 5615 1.375523 CCCAGACACCGCCAGTAAC 60.376 63.158 0.00 0.00 0.00 2.50
2390 5652 1.183030 TTTCCTCAACGGCCTCGAGA 61.183 55.000 15.71 0.00 40.11 4.04
2443 5705 2.283604 GGCCCAAACCCCGACATT 60.284 61.111 0.00 0.00 0.00 2.71
2446 5708 0.898326 GCCCAAACCCCGACATTTCT 60.898 55.000 0.00 0.00 0.00 2.52
2600 5871 1.153549 GCGTACCAGAGCAAGAGGG 60.154 63.158 0.00 0.00 0.00 4.30
2639 5910 2.060383 CCATCGCACTCCTCCTCCA 61.060 63.158 0.00 0.00 0.00 3.86
3814 7118 1.968050 AACCCACCGGACGATGATCC 61.968 60.000 9.46 0.00 35.16 3.36
3816 7120 1.686325 CCCACCGGACGATGATCCTT 61.686 60.000 9.46 0.00 36.52 3.36
3817 7121 0.178068 CCACCGGACGATGATCCTTT 59.822 55.000 9.46 0.00 36.52 3.11
3818 7122 1.406887 CCACCGGACGATGATCCTTTT 60.407 52.381 9.46 0.00 36.52 2.27
3873 7194 8.169393 TGTAACAGATGAGATCAGATCCTAGAT 58.831 37.037 6.80 0.00 0.00 1.98
3874 7195 7.707624 AACAGATGAGATCAGATCCTAGATC 57.292 40.000 6.80 10.75 40.68 2.75
3924 7245 0.968901 TCCCTACGTACCACCAGCAG 60.969 60.000 0.00 0.00 0.00 4.24
4011 7347 1.662629 CGGAGACTGTGTCGTACGTAT 59.337 52.381 16.05 0.00 37.67 3.06
4037 7373 8.897752 TCAGCTGCTCTATATACTGTATGTATG 58.102 37.037 9.47 5.73 41.55 2.39
4039 7375 9.907229 AGCTGCTCTATATACTGTATGTATGTA 57.093 33.333 10.51 3.84 41.55 2.29
4109 7479 5.044558 ACAAACTCGAGTCTTCTTCAACTC 58.955 41.667 20.33 0.00 38.81 3.01
4123 7493 3.515316 AACTCTGGTGTGGCCGACG 62.515 63.158 0.00 0.00 41.21 5.12
4136 7506 2.032634 CCGACGGGTGTGGTTGATG 61.033 63.158 5.81 0.00 0.00 3.07
4164 7534 1.851304 TGGAAATGGGATGAACCAGC 58.149 50.000 0.00 0.00 45.20 4.85
4165 7535 1.114627 GGAAATGGGATGAACCAGCC 58.885 55.000 0.00 0.00 45.20 4.85
4174 7544 3.056328 GAACCAGCCAAGCGACCC 61.056 66.667 0.00 0.00 0.00 4.46
4190 7564 2.701006 CCGCAGGCGATAACGTTG 59.299 61.111 16.21 0.00 46.14 4.10
4208 7582 3.361644 CGTTGAAGGCATTGTTCGAATTG 59.638 43.478 0.00 1.12 0.00 2.32
4209 7583 4.298332 GTTGAAGGCATTGTTCGAATTGT 58.702 39.130 0.00 0.00 0.00 2.71
4226 7602 5.424121 AATTGTTCGGACTTGTTCTTCAG 57.576 39.130 0.00 0.00 0.00 3.02
4234 7612 3.570125 GGACTTGTTCTTCAGGGGAAAAG 59.430 47.826 0.00 0.00 31.35 2.27
4246 7624 4.773674 TCAGGGGAAAAGTCGTTATCTACA 59.226 41.667 0.00 0.00 0.00 2.74
4285 7663 3.051392 AATGGCGGCGCTTTAGCAC 62.051 57.895 32.30 13.58 42.21 4.40
4315 7705 5.502153 TTTTTAAGGCGTTGCTGTAGAAA 57.498 34.783 0.97 0.00 0.00 2.52
4319 7709 6.804770 TTAAGGCGTTGCTGTAGAAAAATA 57.195 33.333 0.97 0.00 0.00 1.40
4323 7713 5.240844 AGGCGTTGCTGTAGAAAAATACTTT 59.759 36.000 0.00 0.00 0.00 2.66
4340 7730 9.802039 AAAATACTTTTCATTGTACTCCCTACA 57.198 29.630 0.00 0.00 33.18 2.74
4341 7731 9.975218 AAATACTTTTCATTGTACTCCCTACAT 57.025 29.630 0.00 0.00 35.18 2.29
4345 7735 9.449719 ACTTTTCATTGTACTCCCTACATAAAG 57.550 33.333 0.00 0.00 35.18 1.85
4346 7736 9.667107 CTTTTCATTGTACTCCCTACATAAAGA 57.333 33.333 0.00 0.00 35.18 2.52
4359 7749 9.841295 TCCCTACATAAAGAAATATAAAAGCGT 57.159 29.630 0.00 0.00 0.00 5.07
4377 7767 7.448748 AAAGCGTTTGGATCATTACTTTAGT 57.551 32.000 0.00 0.00 0.00 2.24
4378 7768 6.422776 AGCGTTTGGATCATTACTTTAGTG 57.577 37.500 0.00 0.00 0.00 2.74
4379 7769 6.170506 AGCGTTTGGATCATTACTTTAGTGA 58.829 36.000 0.00 0.00 0.00 3.41
4380 7770 6.823689 AGCGTTTGGATCATTACTTTAGTGAT 59.176 34.615 0.00 0.00 37.77 3.06
4381 7771 7.011482 AGCGTTTGGATCATTACTTTAGTGATC 59.989 37.037 9.20 9.20 45.67 2.92
4382 7772 7.011482 GCGTTTGGATCATTACTTTAGTGATCT 59.989 37.037 14.68 0.00 45.68 2.75
4383 7773 9.529325 CGTTTGGATCATTACTTTAGTGATCTA 57.471 33.333 14.68 8.79 45.68 1.98
4386 7776 9.832445 TTGGATCATTACTTTAGTGATCTAACC 57.168 33.333 14.68 4.07 45.68 2.85
4387 7777 8.988060 TGGATCATTACTTTAGTGATCTAACCA 58.012 33.333 14.68 5.98 45.68 3.67
4424 7814 2.902608 TGGAGGGAGTACTTGTGATGT 58.097 47.619 0.00 0.00 0.00 3.06
4425 7815 2.832129 TGGAGGGAGTACTTGTGATGTC 59.168 50.000 0.00 0.00 0.00 3.06
4426 7816 2.832129 GGAGGGAGTACTTGTGATGTCA 59.168 50.000 0.00 0.00 0.00 3.58
4427 7817 3.260884 GGAGGGAGTACTTGTGATGTCAA 59.739 47.826 0.00 0.00 0.00 3.18
4428 7818 4.499183 GAGGGAGTACTTGTGATGTCAAG 58.501 47.826 0.00 5.12 46.89 3.02
4438 7828 4.622260 TGTGATGTCAAGAGATGGTCAA 57.378 40.909 0.00 0.00 0.00 3.18
4446 7836 1.306148 AGAGATGGTCAATGCGCATG 58.694 50.000 26.09 17.69 0.00 4.06
4447 7837 0.317603 GAGATGGTCAATGCGCATGC 60.318 55.000 26.09 16.69 43.20 4.06
4500 7893 8.687824 TGTTTTGATCACTTTGAAGTTCTTTC 57.312 30.769 4.17 0.00 37.08 2.62
4535 7930 5.863935 GGGCATAACTTTGATCTTGTTTGAC 59.136 40.000 0.00 1.33 0.00 3.18
4558 7953 4.955925 TTGTCAGTCGTTGTTGTGATTT 57.044 36.364 0.00 0.00 0.00 2.17
4584 7979 2.031068 TGTGTATGTGTGTCGTTGTTGC 59.969 45.455 0.00 0.00 0.00 4.17
4587 7988 2.755836 ATGTGTGTCGTTGTTGCTTC 57.244 45.000 0.00 0.00 0.00 3.86
4591 7992 2.080693 TGTGTCGTTGTTGCTTCTGTT 58.919 42.857 0.00 0.00 0.00 3.16
4600 8001 6.704493 TCGTTGTTGCTTCTGTTTATCTTAGT 59.296 34.615 0.00 0.00 0.00 2.24
4607 8008 8.560355 TGCTTCTGTTTATCTTAGTTATGCAA 57.440 30.769 0.00 0.00 0.00 4.08
4635 8038 6.649141 TCGTGTGCTTATTCTGTTTGTATCTT 59.351 34.615 0.00 0.00 0.00 2.40
4644 8049 5.213891 TCTGTTTGTATCTTCTGTGCTCA 57.786 39.130 0.00 0.00 0.00 4.26
4649 8054 7.140705 TGTTTGTATCTTCTGTGCTCAATTTG 58.859 34.615 0.00 0.00 0.00 2.32
4664 8069 7.332678 GTGCTCAATTTGAAGGCAATAAAATCT 59.667 33.333 13.12 0.00 30.89 2.40
4703 8108 6.491403 AGAAAAGCACCTCAAACATAATGAGT 59.509 34.615 3.18 0.00 42.19 3.41
4721 8126 4.212716 TGAGTATTATGACCACTACCGCT 58.787 43.478 0.00 0.00 0.00 5.52
4722 8127 4.037565 TGAGTATTATGACCACTACCGCTG 59.962 45.833 0.00 0.00 0.00 5.18
4723 8128 2.240493 ATTATGACCACTACCGCTGC 57.760 50.000 0.00 0.00 0.00 5.25
4724 8129 0.899019 TTATGACCACTACCGCTGCA 59.101 50.000 0.00 0.00 0.00 4.41
4728 8133 0.737715 GACCACTACCGCTGCAAGAG 60.738 60.000 0.00 0.00 34.07 2.85
4753 8158 4.760047 CTGGCGCGCCCTAGTTGT 62.760 66.667 44.42 0.00 34.56 3.32
4789 8194 4.202223 GGACTTGGCTTGACCTTATCGATA 60.202 45.833 0.00 0.00 40.22 2.92
4790 8195 5.353394 ACTTGGCTTGACCTTATCGATAA 57.647 39.130 16.69 16.69 40.22 1.75
4807 8212 6.780706 TCGATAAACAACCAAGAAGTCTTC 57.219 37.500 4.26 4.26 33.11 2.87
4835 8240 2.298661 CCCCTAAGGACCAACGCCT 61.299 63.158 0.00 0.00 38.24 5.52
4843 8248 1.906574 AGGACCAACGCCTTAGAATCA 59.093 47.619 0.00 0.00 29.44 2.57
4852 8270 3.195610 ACGCCTTAGAATCACAGTCATCA 59.804 43.478 0.00 0.00 0.00 3.07
4858 8276 7.362401 GCCTTAGAATCACAGTCATCATTGTTT 60.362 37.037 0.00 0.00 0.00 2.83
4879 8297 8.561738 TGTTTAACCCTTGAATAGATCTGAAC 57.438 34.615 5.18 0.00 0.00 3.18
4881 8299 7.510675 TTAACCCTTGAATAGATCTGAACCT 57.489 36.000 5.18 0.00 0.00 3.50
4882 8300 6.394345 AACCCTTGAATAGATCTGAACCTT 57.606 37.500 5.18 0.00 0.00 3.50
4883 8301 6.394345 ACCCTTGAATAGATCTGAACCTTT 57.606 37.500 5.18 0.00 0.00 3.11
4884 8302 6.418946 ACCCTTGAATAGATCTGAACCTTTC 58.581 40.000 5.18 0.24 0.00 2.62
4885 8303 5.825151 CCCTTGAATAGATCTGAACCTTTCC 59.175 44.000 5.18 0.00 0.00 3.13
4887 8305 5.023533 TGAATAGATCTGAACCTTTCCCG 57.976 43.478 5.18 0.00 0.00 5.14
4888 8306 2.981859 TAGATCTGAACCTTTCCCGC 57.018 50.000 5.18 0.00 0.00 6.13
4889 8307 0.984230 AGATCTGAACCTTTCCCGCA 59.016 50.000 0.00 0.00 0.00 5.69
4890 8308 1.351017 AGATCTGAACCTTTCCCGCAA 59.649 47.619 0.00 0.00 0.00 4.85
4892 8310 2.060050 TCTGAACCTTTCCCGCAAAA 57.940 45.000 0.00 0.00 0.00 2.44
4920 8338 8.794335 AAAAGAATAGATCTGAACCAACTACC 57.206 34.615 5.18 0.00 38.79 3.18
4921 8339 7.496346 AAGAATAGATCTGAACCAACTACCA 57.504 36.000 5.18 0.00 38.79 3.25
4922 8340 7.682787 AGAATAGATCTGAACCAACTACCAT 57.317 36.000 5.18 0.00 36.88 3.55
4923 8341 8.095452 AGAATAGATCTGAACCAACTACCATT 57.905 34.615 5.18 0.00 36.88 3.16
4924 8342 9.213777 AGAATAGATCTGAACCAACTACCATTA 57.786 33.333 5.18 0.00 36.88 1.90
4925 8343 9.832445 GAATAGATCTGAACCAACTACCATTAA 57.168 33.333 5.18 0.00 0.00 1.40
4938 8356 6.394025 ACTACCATTAATTCTCTCCGTCTC 57.606 41.667 0.00 0.00 0.00 3.36
4950 8368 1.810853 CCGTCTCGCATGCATGACA 60.811 57.895 30.64 13.89 0.00 3.58
4966 8384 4.261447 GCATGACAAGAAACCGTACCTTTT 60.261 41.667 0.00 0.00 0.00 2.27
4968 8386 3.878699 TGACAAGAAACCGTACCTTTTCC 59.121 43.478 9.28 0.00 32.98 3.13
4969 8387 2.874086 ACAAGAAACCGTACCTTTTCCG 59.126 45.455 9.28 5.35 32.98 4.30
4987 8405 1.111116 CGCCCCAAGGAGACGGTATA 61.111 60.000 0.00 0.00 34.21 1.47
4993 8411 4.262506 CCCCAAGGAGACGGTATAAATCTC 60.263 50.000 0.00 0.00 38.53 2.75
5003 8421 3.253677 CGGTATAAATCTCCGTCAGAGCT 59.746 47.826 0.00 0.00 42.90 4.09
5008 8426 1.098712 ATCTCCGTCAGAGCTCCGTC 61.099 60.000 10.93 0.00 42.90 4.79
5013 8431 1.135731 GTCAGAGCTCCGTCGACTG 59.864 63.158 14.70 7.40 0.00 3.51
5016 8434 2.505118 GAGCTCCGTCGACTGTGC 60.505 66.667 21.60 21.60 0.00 4.57
5020 8438 2.005960 GCTCCGTCGACTGTGCCTAT 62.006 60.000 19.37 0.00 0.00 2.57
5034 8452 1.611977 TGCCTATATGGACGAACTCGG 59.388 52.381 3.88 0.00 39.02 4.63
5039 8457 0.256752 TATGGACGAACTCGGGGAGA 59.743 55.000 3.88 0.00 44.95 3.71
5048 8466 1.068250 CTCGGGGAGAATCGAAGCC 59.932 63.158 0.00 0.00 34.87 4.35
5049 8467 2.109181 CGGGGAGAATCGAAGCCC 59.891 66.667 6.69 6.69 39.93 5.19
5050 8468 2.731571 CGGGGAGAATCGAAGCCCA 61.732 63.158 14.61 0.00 42.52 5.36
5056 8474 2.545731 GAGAATCGAAGCCCAGAAGAC 58.454 52.381 0.00 0.00 0.00 3.01
5059 8477 2.393271 ATCGAAGCCCAGAAGACAAG 57.607 50.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 5.170748 GGGTTCGATGCTTGATTGATTTTT 58.829 37.500 0.00 0.00 0.00 1.94
57 58 4.220382 TGGGTTCGATGCTTGATTGATTTT 59.780 37.500 0.00 0.00 0.00 1.82
58 59 3.763360 TGGGTTCGATGCTTGATTGATTT 59.237 39.130 0.00 0.00 0.00 2.17
59 60 3.355378 TGGGTTCGATGCTTGATTGATT 58.645 40.909 0.00 0.00 0.00 2.57
60 61 3.003394 TGGGTTCGATGCTTGATTGAT 57.997 42.857 0.00 0.00 0.00 2.57
61 62 2.488204 TGGGTTCGATGCTTGATTGA 57.512 45.000 0.00 0.00 0.00 2.57
62 63 2.684374 TCATGGGTTCGATGCTTGATTG 59.316 45.455 0.00 0.00 0.00 2.67
63 64 3.003394 TCATGGGTTCGATGCTTGATT 57.997 42.857 0.00 0.00 0.00 2.57
64 65 2.684881 GTTCATGGGTTCGATGCTTGAT 59.315 45.455 0.00 0.00 0.00 2.57
65 66 2.083774 GTTCATGGGTTCGATGCTTGA 58.916 47.619 0.00 0.00 0.00 3.02
66 67 1.202065 CGTTCATGGGTTCGATGCTTG 60.202 52.381 0.00 0.00 0.00 4.01
67 68 1.086696 CGTTCATGGGTTCGATGCTT 58.913 50.000 0.00 0.00 0.00 3.91
68 69 0.744414 CCGTTCATGGGTTCGATGCT 60.744 55.000 0.00 0.00 0.00 3.79
69 70 1.714899 CCCGTTCATGGGTTCGATGC 61.715 60.000 0.00 0.00 44.76 3.91
70 71 2.393557 CCCGTTCATGGGTTCGATG 58.606 57.895 0.00 0.00 44.76 3.84
71 72 4.954933 CCCGTTCATGGGTTCGAT 57.045 55.556 0.00 0.00 44.76 3.59
78 79 0.321564 TTCAGACAGCCCGTTCATGG 60.322 55.000 0.00 0.00 0.00 3.66
79 80 1.522668 TTTCAGACAGCCCGTTCATG 58.477 50.000 0.00 0.00 0.00 3.07
80 81 1.880027 GTTTTCAGACAGCCCGTTCAT 59.120 47.619 0.00 0.00 0.00 2.57
81 82 1.305201 GTTTTCAGACAGCCCGTTCA 58.695 50.000 0.00 0.00 0.00 3.18
82 83 0.591659 GGTTTTCAGACAGCCCGTTC 59.408 55.000 0.00 0.00 0.00 3.95
83 84 0.182775 AGGTTTTCAGACAGCCCGTT 59.817 50.000 0.00 0.00 0.00 4.44
84 85 0.535102 CAGGTTTTCAGACAGCCCGT 60.535 55.000 0.00 0.00 0.00 5.28
85 86 0.250295 TCAGGTTTTCAGACAGCCCG 60.250 55.000 0.00 0.00 0.00 6.13
86 87 1.528129 CTCAGGTTTTCAGACAGCCC 58.472 55.000 0.00 0.00 0.00 5.19
87 88 0.877743 GCTCAGGTTTTCAGACAGCC 59.122 55.000 0.00 0.00 0.00 4.85
88 89 0.877743 GGCTCAGGTTTTCAGACAGC 59.122 55.000 0.00 0.00 0.00 4.40
89 90 1.151668 CGGCTCAGGTTTTCAGACAG 58.848 55.000 0.00 0.00 0.00 3.51
90 91 0.250295 CCGGCTCAGGTTTTCAGACA 60.250 55.000 0.00 0.00 0.00 3.41
91 92 0.955919 CCCGGCTCAGGTTTTCAGAC 60.956 60.000 0.00 0.00 0.00 3.51
92 93 1.125093 TCCCGGCTCAGGTTTTCAGA 61.125 55.000 0.00 0.00 0.00 3.27
93 94 0.674895 CTCCCGGCTCAGGTTTTCAG 60.675 60.000 0.00 0.00 0.00 3.02
94 95 1.374947 CTCCCGGCTCAGGTTTTCA 59.625 57.895 0.00 0.00 0.00 2.69
95 96 2.041115 GCTCCCGGCTCAGGTTTTC 61.041 63.158 0.00 0.00 38.06 2.29
96 97 2.034221 GCTCCCGGCTCAGGTTTT 59.966 61.111 0.00 0.00 38.06 2.43
97 98 4.035102 GGCTCCCGGCTCAGGTTT 62.035 66.667 0.00 0.00 41.46 3.27
107 108 4.452733 GAACCGGTGAGGCTCCCG 62.453 72.222 27.28 27.28 46.52 5.14
108 109 4.452733 CGAACCGGTGAGGCTCCC 62.453 72.222 8.52 11.69 46.52 4.30
109 110 2.630592 GATCGAACCGGTGAGGCTCC 62.631 65.000 8.52 3.14 46.52 4.70
110 111 1.227002 GATCGAACCGGTGAGGCTC 60.227 63.158 8.52 7.79 46.52 4.70
111 112 1.982395 TGATCGAACCGGTGAGGCT 60.982 57.895 8.52 0.00 46.52 4.58
112 113 1.810030 GTGATCGAACCGGTGAGGC 60.810 63.158 8.52 0.00 46.52 4.70
114 115 1.078759 GCAGTGATCGAACCGGTGAG 61.079 60.000 8.52 5.35 0.00 3.51
115 116 1.080093 GCAGTGATCGAACCGGTGA 60.080 57.895 8.52 1.26 0.00 4.02
116 117 2.444624 CGCAGTGATCGAACCGGTG 61.445 63.158 8.52 0.00 0.00 4.94
117 118 2.126071 CGCAGTGATCGAACCGGT 60.126 61.111 0.00 0.00 0.00 5.28
118 119 3.554692 GCGCAGTGATCGAACCGG 61.555 66.667 0.30 0.00 0.00 5.28
119 120 3.902063 CGCGCAGTGATCGAACCG 61.902 66.667 8.75 0.00 43.07 4.44
120 121 3.554692 CCGCGCAGTGATCGAACC 61.555 66.667 8.75 0.00 43.07 3.62
121 122 2.877360 TACCCGCGCAGTGATCGAAC 62.877 60.000 8.75 0.00 43.07 3.95
122 123 2.011741 ATACCCGCGCAGTGATCGAA 62.012 55.000 8.75 0.00 43.07 3.71
123 124 2.011741 AATACCCGCGCAGTGATCGA 62.012 55.000 8.75 0.00 43.07 3.59
124 125 1.151777 AAATACCCGCGCAGTGATCG 61.152 55.000 8.75 0.00 43.07 3.69
125 126 1.014352 AAAATACCCGCGCAGTGATC 58.986 50.000 8.75 0.00 43.07 2.92
126 127 2.319136 TAAAATACCCGCGCAGTGAT 57.681 45.000 8.75 0.00 43.07 3.06
127 128 2.096220 TTAAAATACCCGCGCAGTGA 57.904 45.000 8.75 0.00 43.07 3.41
128 129 2.160813 AGTTTAAAATACCCGCGCAGTG 59.839 45.455 8.75 0.00 38.04 3.66
129 130 2.429478 AGTTTAAAATACCCGCGCAGT 58.571 42.857 8.75 6.78 0.00 4.40
130 131 4.271533 TCATAGTTTAAAATACCCGCGCAG 59.728 41.667 8.75 0.00 0.00 5.18
131 132 4.190001 TCATAGTTTAAAATACCCGCGCA 58.810 39.130 8.75 0.00 0.00 6.09
132 133 4.799419 TCATAGTTTAAAATACCCGCGC 57.201 40.909 0.00 0.00 0.00 6.86
133 134 5.202640 GCTTCATAGTTTAAAATACCCGCG 58.797 41.667 0.00 0.00 0.00 6.46
134 135 5.969435 GTGCTTCATAGTTTAAAATACCCGC 59.031 40.000 0.00 0.38 0.00 6.13
135 136 6.964934 GTGTGCTTCATAGTTTAAAATACCCG 59.035 38.462 0.00 0.00 0.00 5.28
136 137 7.822658 TGTGTGCTTCATAGTTTAAAATACCC 58.177 34.615 0.00 0.00 0.00 3.69
137 138 9.341899 CTTGTGTGCTTCATAGTTTAAAATACC 57.658 33.333 0.00 0.00 0.00 2.73
138 139 9.341899 CCTTGTGTGCTTCATAGTTTAAAATAC 57.658 33.333 0.00 0.00 0.00 1.89
139 140 9.290988 TCCTTGTGTGCTTCATAGTTTAAAATA 57.709 29.630 0.00 0.00 0.00 1.40
140 141 8.177119 TCCTTGTGTGCTTCATAGTTTAAAAT 57.823 30.769 0.00 0.00 0.00 1.82
141 142 7.575414 TCCTTGTGTGCTTCATAGTTTAAAA 57.425 32.000 0.00 0.00 0.00 1.52
142 143 7.255451 CCTTCCTTGTGTGCTTCATAGTTTAAA 60.255 37.037 0.00 0.00 0.00 1.52
143 144 6.206634 CCTTCCTTGTGTGCTTCATAGTTTAA 59.793 38.462 0.00 0.00 0.00 1.52
144 145 5.705441 CCTTCCTTGTGTGCTTCATAGTTTA 59.295 40.000 0.00 0.00 0.00 2.01
145 146 4.520492 CCTTCCTTGTGTGCTTCATAGTTT 59.480 41.667 0.00 0.00 0.00 2.66
146 147 4.074970 CCTTCCTTGTGTGCTTCATAGTT 58.925 43.478 0.00 0.00 0.00 2.24
147 148 3.560025 CCCTTCCTTGTGTGCTTCATAGT 60.560 47.826 0.00 0.00 0.00 2.12
148 149 3.012518 CCCTTCCTTGTGTGCTTCATAG 58.987 50.000 0.00 0.00 0.00 2.23
149 150 2.642311 TCCCTTCCTTGTGTGCTTCATA 59.358 45.455 0.00 0.00 0.00 2.15
150 151 1.425066 TCCCTTCCTTGTGTGCTTCAT 59.575 47.619 0.00 0.00 0.00 2.57
151 152 0.843309 TCCCTTCCTTGTGTGCTTCA 59.157 50.000 0.00 0.00 0.00 3.02
152 153 1.239347 GTCCCTTCCTTGTGTGCTTC 58.761 55.000 0.00 0.00 0.00 3.86
153 154 0.178990 GGTCCCTTCCTTGTGTGCTT 60.179 55.000 0.00 0.00 0.00 3.91
154 155 1.456287 GGTCCCTTCCTTGTGTGCT 59.544 57.895 0.00 0.00 0.00 4.40
155 156 1.603739 GGGTCCCTTCCTTGTGTGC 60.604 63.158 0.00 0.00 0.00 4.57
156 157 0.184933 TTGGGTCCCTTCCTTGTGTG 59.815 55.000 10.00 0.00 0.00 3.82
157 158 0.930726 TTTGGGTCCCTTCCTTGTGT 59.069 50.000 10.00 0.00 0.00 3.72
158 159 1.686587 GTTTTGGGTCCCTTCCTTGTG 59.313 52.381 10.00 0.00 0.00 3.33
159 160 1.752788 CGTTTTGGGTCCCTTCCTTGT 60.753 52.381 10.00 0.00 0.00 3.16
160 161 0.958822 CGTTTTGGGTCCCTTCCTTG 59.041 55.000 10.00 0.00 0.00 3.61
161 162 0.178973 CCGTTTTGGGTCCCTTCCTT 60.179 55.000 10.00 0.00 0.00 3.36
162 163 1.458927 CCGTTTTGGGTCCCTTCCT 59.541 57.895 10.00 0.00 0.00 3.36
163 164 2.273179 GCCGTTTTGGGTCCCTTCC 61.273 63.158 10.00 0.00 38.63 3.46
164 165 2.622962 CGCCGTTTTGGGTCCCTTC 61.623 63.158 10.00 0.00 38.63 3.46
165 166 2.596338 CGCCGTTTTGGGTCCCTT 60.596 61.111 10.00 0.00 38.63 3.95
166 167 3.546714 CTCGCCGTTTTGGGTCCCT 62.547 63.158 10.00 0.00 38.63 4.20
167 168 3.053896 CTCGCCGTTTTGGGTCCC 61.054 66.667 0.00 0.00 38.63 4.46
168 169 3.733960 GCTCGCCGTTTTGGGTCC 61.734 66.667 0.00 0.00 38.63 4.46
169 170 2.668550 AGCTCGCCGTTTTGGGTC 60.669 61.111 0.00 0.00 38.63 4.46
170 171 1.823169 TAGAGCTCGCCGTTTTGGGT 61.823 55.000 8.37 0.00 38.63 4.51
171 172 0.462047 ATAGAGCTCGCCGTTTTGGG 60.462 55.000 8.37 0.00 38.63 4.12
172 173 0.931005 GATAGAGCTCGCCGTTTTGG 59.069 55.000 8.37 0.00 42.50 3.28
173 174 1.927895 AGATAGAGCTCGCCGTTTTG 58.072 50.000 8.37 0.00 0.00 2.44
174 175 2.688958 AGTAGATAGAGCTCGCCGTTTT 59.311 45.455 8.37 0.00 0.00 2.43
175 176 2.299521 AGTAGATAGAGCTCGCCGTTT 58.700 47.619 8.37 0.00 0.00 3.60
176 177 1.970092 AGTAGATAGAGCTCGCCGTT 58.030 50.000 8.37 0.00 0.00 4.44
177 178 2.037511 AGTAGTAGATAGAGCTCGCCGT 59.962 50.000 8.37 0.00 0.00 5.68
178 179 2.669434 GAGTAGTAGATAGAGCTCGCCG 59.331 54.545 8.37 0.00 0.00 6.46
179 180 3.004862 GGAGTAGTAGATAGAGCTCGCC 58.995 54.545 8.37 1.38 0.00 5.54
180 181 3.004862 GGGAGTAGTAGATAGAGCTCGC 58.995 54.545 8.37 1.95 0.00 5.03
181 182 4.501071 GAGGGAGTAGTAGATAGAGCTCG 58.499 52.174 8.37 0.00 0.00 5.03
182 183 4.622220 CGGAGGGAGTAGTAGATAGAGCTC 60.622 54.167 5.27 5.27 0.00 4.09
183 184 3.262405 CGGAGGGAGTAGTAGATAGAGCT 59.738 52.174 0.00 0.00 0.00 4.09
184 185 3.008266 ACGGAGGGAGTAGTAGATAGAGC 59.992 52.174 0.00 0.00 0.00 4.09
185 186 4.895668 ACGGAGGGAGTAGTAGATAGAG 57.104 50.000 0.00 0.00 0.00 2.43
186 187 6.328672 AGTTTACGGAGGGAGTAGTAGATAGA 59.671 42.308 0.00 0.00 0.00 1.98
187 188 6.532826 AGTTTACGGAGGGAGTAGTAGATAG 58.467 44.000 0.00 0.00 0.00 2.08
188 189 6.506538 AGTTTACGGAGGGAGTAGTAGATA 57.493 41.667 0.00 0.00 0.00 1.98
189 190 5.385628 AGTTTACGGAGGGAGTAGTAGAT 57.614 43.478 0.00 0.00 0.00 1.98
190 191 4.851639 AGTTTACGGAGGGAGTAGTAGA 57.148 45.455 0.00 0.00 0.00 2.59
191 192 8.153550 TCTTATAGTTTACGGAGGGAGTAGTAG 58.846 40.741 0.00 0.00 0.00 2.57
192 193 8.034313 TCTTATAGTTTACGGAGGGAGTAGTA 57.966 38.462 0.00 0.00 0.00 1.82
193 194 6.904626 TCTTATAGTTTACGGAGGGAGTAGT 58.095 40.000 0.00 0.00 0.00 2.73
194 195 6.997476 ACTCTTATAGTTTACGGAGGGAGTAG 59.003 42.308 0.00 0.00 33.35 2.57
195 196 6.769822 CACTCTTATAGTTTACGGAGGGAGTA 59.230 42.308 0.00 0.00 35.76 2.59
196 197 5.593502 CACTCTTATAGTTTACGGAGGGAGT 59.406 44.000 0.00 0.00 35.76 3.85
197 198 5.593502 ACACTCTTATAGTTTACGGAGGGAG 59.406 44.000 0.00 0.00 35.76 4.30
198 199 5.513233 ACACTCTTATAGTTTACGGAGGGA 58.487 41.667 0.00 0.00 35.76 4.20
199 200 5.848833 ACACTCTTATAGTTTACGGAGGG 57.151 43.478 0.00 0.00 35.76 4.30
200 201 8.680903 TCTAAACACTCTTATAGTTTACGGAGG 58.319 37.037 0.00 0.00 35.76 4.30
255 256 8.862085 GCTCTTACTCCCTCTGTAAACTAATAT 58.138 37.037 0.00 0.00 30.72 1.28
256 257 8.060075 AGCTCTTACTCCCTCTGTAAACTAATA 58.940 37.037 0.00 0.00 30.72 0.98
257 258 6.898521 AGCTCTTACTCCCTCTGTAAACTAAT 59.101 38.462 0.00 0.00 30.72 1.73
258 259 6.254522 AGCTCTTACTCCCTCTGTAAACTAA 58.745 40.000 0.00 0.00 30.72 2.24
259 260 5.828871 AGCTCTTACTCCCTCTGTAAACTA 58.171 41.667 0.00 0.00 30.72 2.24
260 261 4.679331 AGCTCTTACTCCCTCTGTAAACT 58.321 43.478 0.00 0.00 30.72 2.66
261 262 5.653330 AGTAGCTCTTACTCCCTCTGTAAAC 59.347 44.000 0.00 0.00 38.20 2.01
262 263 5.828871 AGTAGCTCTTACTCCCTCTGTAAA 58.171 41.667 0.00 0.00 38.20 2.01
263 264 5.453866 AGTAGCTCTTACTCCCTCTGTAA 57.546 43.478 0.00 0.00 38.20 2.41
309 310 6.626623 GCATCCTGTAGAACTACTTTTACGGA 60.627 42.308 12.25 8.78 37.00 4.69
341 342 9.110502 GATATTTGACGGAACTTCTCCTAAATT 57.889 33.333 0.00 0.00 42.85 1.82
365 366 9.516546 ACGAAAGAAACTATTTTAGGGAAAGAT 57.483 29.630 0.00 0.00 0.00 2.40
381 382 9.893305 CCATTTAATGGGATATACGAAAGAAAC 57.107 33.333 15.79 0.00 46.86 2.78
414 415 0.946221 CGTGTCTCAGACTTGTGGGC 60.946 60.000 6.33 0.00 33.15 5.36
465 466 0.032515 TCTTCTACCCCGCCTCATCA 60.033 55.000 0.00 0.00 0.00 3.07
474 475 0.175989 CGTCTTGGCTCTTCTACCCC 59.824 60.000 0.00 0.00 0.00 4.95
478 479 0.895530 CCACCGTCTTGGCTCTTCTA 59.104 55.000 0.00 0.00 43.94 2.10
481 482 1.831652 CTCCCACCGTCTTGGCTCTT 61.832 60.000 0.00 0.00 43.94 2.85
527 528 1.821759 CCTGCACCACCGAACAACA 60.822 57.895 0.00 0.00 0.00 3.33
529 530 1.525077 GTCCTGCACCACCGAACAA 60.525 57.895 0.00 0.00 0.00 2.83
555 556 2.357637 TGAAAACCGCTTGAAACTCCAG 59.642 45.455 0.00 0.00 0.00 3.86
600 614 4.181578 TCTCACTTTTACGGCAAGATAGC 58.818 43.478 0.00 0.00 0.00 2.97
601 615 4.806247 CCTCTCACTTTTACGGCAAGATAG 59.194 45.833 0.00 0.00 0.00 2.08
625 639 1.958579 ACCCAACTTCTTTTTACGGCC 59.041 47.619 0.00 0.00 0.00 6.13
633 669 3.832490 GCTCCCATAAACCCAACTTCTTT 59.168 43.478 0.00 0.00 0.00 2.52
708 3813 3.507622 GCAACTCCAACAGCTTTCCTAAT 59.492 43.478 0.00 0.00 0.00 1.73
709 3814 2.884639 GCAACTCCAACAGCTTTCCTAA 59.115 45.455 0.00 0.00 0.00 2.69
721 3826 3.281727 AGTCACTTGAAGCAACTCCAA 57.718 42.857 0.00 0.00 0.00 3.53
743 3848 2.376518 AGAGAGGACCCTTTTCAATGCA 59.623 45.455 0.00 0.00 0.00 3.96
744 3849 3.078891 AGAGAGGACCCTTTTCAATGC 57.921 47.619 0.00 0.00 0.00 3.56
782 3892 4.778213 TCCATCCCTCTTTTAGACCATG 57.222 45.455 0.00 0.00 0.00 3.66
783 3893 4.352298 GGATCCATCCCTCTTTTAGACCAT 59.648 45.833 6.95 0.00 41.20 3.55
785 3895 4.359434 GGATCCATCCCTCTTTTAGACC 57.641 50.000 6.95 0.00 41.20 3.85
922 4074 2.027625 GGGAGCTTGACCAACGACG 61.028 63.158 0.00 0.00 0.00 5.12
926 4078 1.002011 GGGAGGGAGCTTGACCAAC 60.002 63.158 5.93 0.53 0.00 3.77
927 4079 1.151810 AGGGAGGGAGCTTGACCAA 60.152 57.895 5.93 0.00 0.00 3.67
929 4081 2.371259 GGAGGGAGGGAGCTTGACC 61.371 68.421 0.00 0.00 0.00 4.02
930 4082 2.726351 CGGAGGGAGGGAGCTTGAC 61.726 68.421 0.00 0.00 0.00 3.18
931 4083 2.364317 CGGAGGGAGGGAGCTTGA 60.364 66.667 0.00 0.00 0.00 3.02
1068 4273 8.845227 AGGTGGCAACTTTTAAATTTAAAATGG 58.155 29.630 27.76 21.39 40.60 3.16
1071 4276 9.449719 TGAAGGTGGCAACTTTTAAATTTAAAA 57.550 25.926 26.52 26.52 39.53 1.52
1078 4283 6.149640 GGTTTTTGAAGGTGGCAACTTTTAAA 59.850 34.615 20.46 19.34 31.70 1.52
1080 4285 5.046231 AGGTTTTTGAAGGTGGCAACTTTTA 60.046 36.000 20.46 9.14 37.61 1.52
1081 4286 4.006989 GGTTTTTGAAGGTGGCAACTTTT 58.993 39.130 20.46 0.00 37.61 2.27
1082 4287 3.263170 AGGTTTTTGAAGGTGGCAACTTT 59.737 39.130 20.46 2.83 37.61 2.66
1095 4300 0.250553 ACGGCGATGGAGGTTTTTGA 60.251 50.000 16.62 0.00 0.00 2.69
1124 4329 2.460918 CATGATGGAGGAACGACGTAC 58.539 52.381 0.00 0.00 0.00 3.67
1125 4330 1.407618 CCATGATGGAGGAACGACGTA 59.592 52.381 5.27 0.00 40.96 3.57
1126 4331 0.175760 CCATGATGGAGGAACGACGT 59.824 55.000 5.27 0.00 40.96 4.34
1127 4332 1.154205 GCCATGATGGAGGAACGACG 61.154 60.000 17.22 0.00 40.96 5.12
1128 4333 1.154205 CGCCATGATGGAGGAACGAC 61.154 60.000 17.22 0.00 40.96 4.34
1129 4334 1.143838 CGCCATGATGGAGGAACGA 59.856 57.895 17.22 0.00 40.96 3.85
1130 4335 3.723172 CGCCATGATGGAGGAACG 58.277 61.111 17.22 4.74 40.96 3.95
1207 4460 3.893968 TATATGTCCGCGCCGACGAAC 62.894 57.143 21.08 1.88 43.93 3.95
1208 4461 1.784036 TATATGTCCGCGCCGACGAA 61.784 55.000 21.08 13.27 43.93 3.85
1209 4462 2.253051 TATATGTCCGCGCCGACGA 61.253 57.895 21.08 13.45 43.93 4.20
1210 4463 2.078914 GTATATGTCCGCGCCGACG 61.079 63.158 21.08 0.00 44.07 5.12
1211 4464 0.595567 TTGTATATGTCCGCGCCGAC 60.596 55.000 20.04 20.04 0.00 4.79
1219 4472 2.870411 GTCCGTTGGCTTGTATATGTCC 59.130 50.000 0.00 0.00 0.00 4.02
1423 4679 0.333993 AGGTGTAGGCGGTCTCCTTA 59.666 55.000 0.00 0.00 37.66 2.69
1498 4754 2.580276 GCGGGGATGTCGTGGTAA 59.420 61.111 0.00 0.00 0.00 2.85
1535 4791 4.101448 GCCGGTGGAGGTGCTGAT 62.101 66.667 1.90 0.00 0.00 2.90
1539 4795 4.408821 TGATGCCGGTGGAGGTGC 62.409 66.667 1.90 0.00 0.00 5.01
1711 4973 1.708341 TGGAGATGATCTCGATGCCA 58.292 50.000 15.64 6.08 44.28 4.92
1825 5087 4.862447 TAGGAGCCGCCGACGCTA 62.862 66.667 0.00 0.00 43.43 4.26
1853 5115 4.003788 CAGCCCGGAGTCGTTGGT 62.004 66.667 0.73 0.00 33.95 3.67
1871 5133 3.692406 GGAGAACCACTCGCGGGT 61.692 66.667 5.36 5.36 45.76 5.28
2030 5292 2.165437 TGTTGTTCTTGTTCAGGTTGGC 59.835 45.455 0.00 0.00 0.00 4.52
2036 5298 4.438744 GGTGAGGTTGTTGTTCTTGTTCAG 60.439 45.833 0.00 0.00 0.00 3.02
2349 5611 1.523934 CGTTGACGAACTGTGGGTTAC 59.476 52.381 0.00 0.00 43.02 2.50
2350 5612 1.855513 CGTTGACGAACTGTGGGTTA 58.144 50.000 0.00 0.00 43.02 2.85
2353 5615 1.157870 AAGCGTTGACGAACTGTGGG 61.158 55.000 7.85 0.00 43.02 4.61
2390 5652 1.641577 GCGTCGCTCACCTTAAAGAT 58.358 50.000 10.68 0.00 0.00 2.40
2443 5705 0.465705 CCTCCGCCAGCATCTTAGAA 59.534 55.000 0.00 0.00 0.00 2.10
2446 5708 2.505982 GCCTCCGCCAGCATCTTA 59.494 61.111 0.00 0.00 0.00 2.10
2623 5894 1.760086 CCTGGAGGAGGAGTGCGAT 60.760 63.158 0.00 0.00 46.33 4.58
2639 5910 4.016706 GTACACCGGCAGCCACCT 62.017 66.667 13.30 0.00 0.00 4.00
2705 5979 0.038166 ATGTTGGGGTTCAGCGTCAT 59.962 50.000 0.00 0.00 0.00 3.06
3817 7121 4.258543 AGACGTGAAGTGAAGGTGAAAAA 58.741 39.130 0.00 0.00 0.00 1.94
3818 7122 3.869065 AGACGTGAAGTGAAGGTGAAAA 58.131 40.909 0.00 0.00 0.00 2.29
3820 7124 2.543031 CGAGACGTGAAGTGAAGGTGAA 60.543 50.000 0.00 0.00 0.00 3.18
3821 7125 1.001706 CGAGACGTGAAGTGAAGGTGA 60.002 52.381 0.00 0.00 0.00 4.02
3822 7126 1.269102 ACGAGACGTGAAGTGAAGGTG 60.269 52.381 0.00 0.00 39.18 4.00
3823 7127 1.001597 GACGAGACGTGAAGTGAAGGT 60.002 52.381 0.00 0.00 41.37 3.50
3825 7129 2.576406 GAGACGAGACGTGAAGTGAAG 58.424 52.381 0.00 0.00 41.37 3.02
3826 7130 1.070108 CGAGACGAGACGTGAAGTGAA 60.070 52.381 0.00 0.00 41.37 3.18
3829 7133 2.614581 ACGAGACGAGACGTGAAGT 58.385 52.632 0.00 0.00 41.37 3.01
3892 7213 2.292061 ACGTAGGGAGGAGTACAACCAT 60.292 50.000 10.84 2.03 0.00 3.55
3893 7214 1.076024 ACGTAGGGAGGAGTACAACCA 59.924 52.381 10.84 0.00 0.00 3.67
3894 7215 1.844687 ACGTAGGGAGGAGTACAACC 58.155 55.000 0.00 0.00 0.00 3.77
3924 7245 2.703416 TCCATGCATGTCTGTCTTGTC 58.297 47.619 24.58 0.00 0.00 3.18
3981 7317 1.267574 ACAGTCTCCGATGCACCCAT 61.268 55.000 0.00 0.00 0.00 4.00
4011 7347 8.897752 CATACATACAGTATATAGAGCAGCTGA 58.102 37.037 20.43 0.00 41.47 4.26
4123 7493 2.799126 TACATCCATCAACCACACCC 57.201 50.000 0.00 0.00 0.00 4.61
4126 7496 4.928263 TCCATTTACATCCATCAACCACA 58.072 39.130 0.00 0.00 0.00 4.17
4136 7506 6.462909 GGTTCATCCCATTTCCATTTACATCC 60.463 42.308 0.00 0.00 0.00 3.51
4174 7544 0.025001 CTTCAACGTTATCGCCTGCG 59.975 55.000 0.00 4.92 41.18 5.18
4208 7582 2.143925 CCCTGAAGAACAAGTCCGAAC 58.856 52.381 0.00 0.00 0.00 3.95
4209 7583 1.071699 CCCCTGAAGAACAAGTCCGAA 59.928 52.381 0.00 0.00 0.00 4.30
4226 7602 4.824289 TGTGTAGATAACGACTTTTCCCC 58.176 43.478 0.00 0.00 0.00 4.81
4234 7612 6.255020 CCAACCACTAATGTGTAGATAACGAC 59.745 42.308 0.00 0.00 42.34 4.34
4246 7624 1.884928 GCCGGAACCAACCACTAATGT 60.885 52.381 5.05 0.00 0.00 2.71
4297 7687 5.935789 AGTATTTTTCTACAGCAACGCCTTA 59.064 36.000 0.00 0.00 0.00 2.69
4315 7705 9.975218 ATGTAGGGAGTACAATGAAAAGTATTT 57.025 29.630 0.00 0.00 45.00 1.40
4319 7709 9.449719 CTTTATGTAGGGAGTACAATGAAAAGT 57.550 33.333 0.00 0.00 45.00 2.66
4354 7744 6.653320 TCACTAAAGTAATGATCCAAACGCTT 59.347 34.615 0.00 0.00 0.00 4.68
4356 7746 6.417191 TCACTAAAGTAATGATCCAAACGC 57.583 37.500 0.00 0.00 0.00 4.84
4357 7747 8.425577 AGATCACTAAAGTAATGATCCAAACG 57.574 34.615 9.29 0.00 46.61 3.60
4360 7750 9.832445 GGTTAGATCACTAAAGTAATGATCCAA 57.168 33.333 9.29 0.98 46.61 3.53
4361 7751 8.988060 TGGTTAGATCACTAAAGTAATGATCCA 58.012 33.333 9.29 0.03 46.61 3.41
4399 7789 6.012858 ACATCACAAGTACTCCCTCCATAAAA 60.013 38.462 0.00 0.00 0.00 1.52
4408 7798 4.220821 TCTCTTGACATCACAAGTACTCCC 59.779 45.833 0.00 0.00 44.96 4.30
4424 7814 1.338960 TGCGCATTGACCATCTCTTGA 60.339 47.619 5.66 0.00 0.00 3.02
4425 7815 1.089112 TGCGCATTGACCATCTCTTG 58.911 50.000 5.66 0.00 0.00 3.02
4426 7816 1.674441 CATGCGCATTGACCATCTCTT 59.326 47.619 22.81 0.00 0.00 2.85
4427 7817 1.306148 CATGCGCATTGACCATCTCT 58.694 50.000 22.81 0.00 0.00 3.10
4428 7818 0.317603 GCATGCGCATTGACCATCTC 60.318 55.000 22.81 0.00 38.36 2.75
4438 7828 3.511595 CAGGAACCGCATGCGCAT 61.512 61.111 34.00 23.79 38.40 4.73
4500 7893 2.119495 AGTTATGCCCTGGTGGAGTAG 58.881 52.381 0.00 0.00 35.39 2.57
4535 7930 4.536364 ATCACAACAACGACTGACAAAG 57.464 40.909 0.00 0.00 0.00 2.77
4558 7953 6.606234 ACAACGACACACATACACATAAAA 57.394 33.333 0.00 0.00 0.00 1.52
4576 7971 6.888430 ACTAAGATAAACAGAAGCAACAACG 58.112 36.000 0.00 0.00 0.00 4.10
4587 7988 8.604035 ACGATGTTGCATAACTAAGATAAACAG 58.396 33.333 0.00 0.00 37.68 3.16
4591 7992 7.465379 GCACACGATGTTGCATAACTAAGATAA 60.465 37.037 0.00 0.00 37.68 1.75
4600 8001 5.353956 AGAATAAGCACACGATGTTGCATAA 59.646 36.000 0.00 0.00 30.52 1.90
4607 8008 4.515191 ACAAACAGAATAAGCACACGATGT 59.485 37.500 0.00 0.00 0.00 3.06
4610 8011 6.163476 AGATACAAACAGAATAAGCACACGA 58.837 36.000 0.00 0.00 0.00 4.35
4635 8038 2.585330 TGCCTTCAAATTGAGCACAGA 58.415 42.857 5.90 0.00 0.00 3.41
4644 8049 8.379428 AGGGTAGATTTTATTGCCTTCAAATT 57.621 30.769 0.00 0.00 35.56 1.82
4649 8054 6.775594 ACAAGGGTAGATTTTATTGCCTTC 57.224 37.500 0.00 0.00 0.00 3.46
4664 8069 4.098807 GTGCTTTTCTTTCCAACAAGGGTA 59.901 41.667 0.00 0.00 38.24 3.69
4703 8108 2.696187 TGCAGCGGTAGTGGTCATAATA 59.304 45.455 0.00 0.00 0.00 0.98
4746 8151 0.831307 GGTAGGGGAGCCACAACTAG 59.169 60.000 0.00 0.00 0.00 2.57
4747 8152 0.974010 CGGTAGGGGAGCCACAACTA 60.974 60.000 0.00 0.00 0.00 2.24
4751 8156 4.000620 TCCGGTAGGGGAGCCACA 62.001 66.667 0.00 0.00 38.33 4.17
4753 8158 3.248248 AAGTCCGGTAGGGGAGCCA 62.248 63.158 0.00 0.00 36.58 4.75
4754 8159 2.365237 AAGTCCGGTAGGGGAGCC 60.365 66.667 0.00 0.00 36.58 4.70
4807 8212 0.034186 TCCTTAGGGGCATGTGCAAG 60.034 55.000 7.36 2.01 44.36 4.01
4840 8245 6.248433 AGGGTTAAACAATGATGACTGTGAT 58.752 36.000 0.00 0.00 0.00 3.06
4843 8248 6.068010 TCAAGGGTTAAACAATGATGACTGT 58.932 36.000 0.00 0.00 0.00 3.55
4852 8270 9.753674 TTCAGATCTATTCAAGGGTTAAACAAT 57.246 29.630 0.00 0.00 0.00 2.71
4858 8276 7.510675 AAGGTTCAGATCTATTCAAGGGTTA 57.489 36.000 0.00 0.00 0.00 2.85
4894 8312 9.232473 GGTAGTTGGTTCAGATCTATTCTTTTT 57.768 33.333 0.00 0.00 29.93 1.94
4895 8313 8.383175 TGGTAGTTGGTTCAGATCTATTCTTTT 58.617 33.333 0.00 0.00 29.93 2.27
4896 8314 7.918076 TGGTAGTTGGTTCAGATCTATTCTTT 58.082 34.615 0.00 0.00 29.93 2.52
4897 8315 7.496346 TGGTAGTTGGTTCAGATCTATTCTT 57.504 36.000 0.00 0.00 29.93 2.52
4898 8316 7.682787 ATGGTAGTTGGTTCAGATCTATTCT 57.317 36.000 0.00 0.00 33.90 2.40
4899 8317 9.832445 TTAATGGTAGTTGGTTCAGATCTATTC 57.168 33.333 0.00 0.00 0.00 1.75
4902 8320 9.832445 GAATTAATGGTAGTTGGTTCAGATCTA 57.168 33.333 0.00 0.00 0.00 1.98
4903 8321 8.552296 AGAATTAATGGTAGTTGGTTCAGATCT 58.448 33.333 0.00 0.00 0.00 2.75
4904 8322 8.738645 AGAATTAATGGTAGTTGGTTCAGATC 57.261 34.615 0.00 0.00 0.00 2.75
4905 8323 8.552296 AGAGAATTAATGGTAGTTGGTTCAGAT 58.448 33.333 0.00 0.00 0.00 2.90
4906 8324 7.918076 AGAGAATTAATGGTAGTTGGTTCAGA 58.082 34.615 0.00 0.00 0.00 3.27
4907 8325 7.281100 GGAGAGAATTAATGGTAGTTGGTTCAG 59.719 40.741 0.00 0.00 0.00 3.02
4908 8326 7.110155 GGAGAGAATTAATGGTAGTTGGTTCA 58.890 38.462 0.00 0.00 0.00 3.18
4909 8327 6.258068 CGGAGAGAATTAATGGTAGTTGGTTC 59.742 42.308 0.00 0.00 0.00 3.62
4910 8328 6.113411 CGGAGAGAATTAATGGTAGTTGGTT 58.887 40.000 0.00 0.00 0.00 3.67
4911 8329 5.189145 ACGGAGAGAATTAATGGTAGTTGGT 59.811 40.000 0.00 0.00 0.00 3.67
4912 8330 5.671493 ACGGAGAGAATTAATGGTAGTTGG 58.329 41.667 0.00 0.00 0.00 3.77
4913 8331 6.574350 AGACGGAGAGAATTAATGGTAGTTG 58.426 40.000 0.00 0.00 0.00 3.16
4914 8332 6.459848 CGAGACGGAGAGAATTAATGGTAGTT 60.460 42.308 0.00 0.00 0.00 2.24
4915 8333 5.008811 CGAGACGGAGAGAATTAATGGTAGT 59.991 44.000 0.00 0.00 0.00 2.73
4916 8334 5.453648 CGAGACGGAGAGAATTAATGGTAG 58.546 45.833 0.00 0.00 0.00 3.18
4917 8335 4.261489 GCGAGACGGAGAGAATTAATGGTA 60.261 45.833 0.00 0.00 0.00 3.25
4918 8336 3.491104 GCGAGACGGAGAGAATTAATGGT 60.491 47.826 0.00 0.00 0.00 3.55
4919 8337 3.053455 GCGAGACGGAGAGAATTAATGG 58.947 50.000 0.00 0.00 0.00 3.16
4920 8338 3.706698 TGCGAGACGGAGAGAATTAATG 58.293 45.455 0.00 0.00 0.00 1.90
4921 8339 4.302455 CATGCGAGACGGAGAGAATTAAT 58.698 43.478 0.00 0.00 0.00 1.40
4922 8340 3.706698 CATGCGAGACGGAGAGAATTAA 58.293 45.455 0.00 0.00 0.00 1.40
4923 8341 2.543861 GCATGCGAGACGGAGAGAATTA 60.544 50.000 0.00 0.00 0.00 1.40
4924 8342 1.804372 GCATGCGAGACGGAGAGAATT 60.804 52.381 0.00 0.00 0.00 2.17
4925 8343 0.249238 GCATGCGAGACGGAGAGAAT 60.249 55.000 0.00 0.00 0.00 2.40
4926 8344 1.139734 GCATGCGAGACGGAGAGAA 59.860 57.895 0.00 0.00 0.00 2.87
4938 8356 1.621107 GGTTTCTTGTCATGCATGCG 58.379 50.000 22.25 9.86 0.00 4.73
4950 8368 1.875514 GCGGAAAAGGTACGGTTTCTT 59.124 47.619 15.51 0.00 37.39 2.52
4968 8386 1.111116 TATACCGTCTCCTTGGGGCG 61.111 60.000 0.00 0.00 0.00 6.13
4969 8387 1.125633 TTATACCGTCTCCTTGGGGC 58.874 55.000 0.00 0.00 0.00 5.80
4984 8402 3.502595 CGGAGCTCTGACGGAGATTTATA 59.497 47.826 18.26 0.00 41.17 0.98
4987 8405 0.457851 CGGAGCTCTGACGGAGATTT 59.542 55.000 18.26 0.00 41.17 2.17
4993 8411 3.125573 TCGACGGAGCTCTGACGG 61.126 66.667 35.29 22.24 39.97 4.79
4996 8414 1.302591 ACAGTCGACGGAGCTCTGA 60.303 57.895 29.29 11.53 0.00 3.27
4998 8416 2.983930 GCACAGTCGACGGAGCTCT 61.984 63.158 25.48 0.66 0.00 4.09
4999 8417 2.505118 GCACAGTCGACGGAGCTC 60.505 66.667 25.48 4.71 0.00 4.09
5003 8421 1.607148 CATATAGGCACAGTCGACGGA 59.393 52.381 22.71 0.00 0.00 4.69
5008 8426 1.607148 TCGTCCATATAGGCACAGTCG 59.393 52.381 0.00 0.00 37.29 4.18
5013 8431 2.607282 CCGAGTTCGTCCATATAGGCAC 60.607 54.545 0.48 0.00 37.74 5.01
5016 8434 1.544691 CCCCGAGTTCGTCCATATAGG 59.455 57.143 0.48 0.00 37.74 2.57
5020 8438 0.256752 TCTCCCCGAGTTCGTCCATA 59.743 55.000 0.48 0.00 37.74 2.74
5034 8452 0.541863 TTCTGGGCTTCGATTCTCCC 59.458 55.000 5.22 5.22 39.22 4.30
5039 8457 2.039084 ACTTGTCTTCTGGGCTTCGATT 59.961 45.455 0.00 0.00 0.00 3.34
5066 8484 5.699143 TCCGGCTAGTAGTTTAGATTAGGT 58.301 41.667 0.00 0.00 0.00 3.08
5072 8490 1.945394 CGCTCCGGCTAGTAGTTTAGA 59.055 52.381 0.00 0.00 36.09 2.10
5081 8499 3.838271 TGCCTTCGCTCCGGCTAG 61.838 66.667 0.00 0.00 46.42 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.