Multiple sequence alignment - TraesCS4B01G001100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G001100 chr4B 100.000 2753 0 0 1 2753 654685 651933 0.000000e+00 5084
1 TraesCS4B01G001100 chr4B 99.338 151 1 0 2127 2277 640981937 640981787 9.710000e-70 274
2 TraesCS4B01G001100 chr4B 99.057 106 1 0 2128 2233 42531027 42530922 1.010000e-44 191
3 TraesCS4B01G001100 chr4D 91.248 1634 63 38 440 2049 1230307 1231884 0.000000e+00 2152
4 TraesCS4B01G001100 chr4D 92.391 368 16 5 1 360 1229904 1230267 5.260000e-142 514
5 TraesCS4B01G001100 chr4D 90.625 384 30 4 2280 2661 1231971 1232350 3.160000e-139 505
6 TraesCS4B01G001100 chr4A 88.092 1436 64 48 647 2049 603540772 603539411 0.000000e+00 1605
7 TraesCS4B01G001100 chr4A 86.486 555 41 15 1 532 603541381 603540838 1.840000e-161 579
8 TraesCS4B01G001100 chr4A 87.013 385 38 9 2281 2661 603539320 603538944 9.110000e-115 424
9 TraesCS4B01G001100 chr4A 82.664 473 76 4 1099 1565 103068740 103069212 5.490000e-112 414
10 TraesCS4B01G001100 chr6A 85.089 1462 99 62 709 2118 27772460 27773854 0.000000e+00 1382
11 TraesCS4B01G001100 chr6A 87.654 486 55 5 1075 1556 609176277 609176761 6.660000e-156 560
12 TraesCS4B01G001100 chr6A 89.189 148 14 2 184 330 27772036 27772182 1.680000e-42 183
13 TraesCS4B01G001100 chr6D 84.631 1477 103 67 709 2121 26350711 26352127 0.000000e+00 1356
14 TraesCS4B01G001100 chr6D 86.831 486 59 5 1075 1556 462422963 462423447 3.120000e-149 538
15 TraesCS4B01G001100 chr6D 76.771 353 35 31 1 344 26350129 26350443 1.320000e-33 154
16 TraesCS4B01G001100 chr6B 86.525 1269 87 44 870 2121 48551814 48553015 0.000000e+00 1319
17 TraesCS4B01G001100 chr6B 87.449 486 56 5 1075 1556 704890658 704891142 3.100000e-154 555
18 TraesCS4B01G001100 chr6B 100.000 150 0 0 2128 2277 51561079 51560930 7.510000e-71 278
19 TraesCS4B01G001100 chr6B 77.841 352 42 23 3 344 48551015 48551340 4.680000e-43 185
20 TraesCS4B01G001100 chr7B 100.000 150 0 0 2128 2277 231700613 231700464 7.510000e-71 278
21 TraesCS4B01G001100 chr7B 98.026 152 3 0 2128 2279 734278305 734278154 5.850000e-67 265
22 TraesCS4B01G001100 chr3B 100.000 150 0 0 2128 2277 31012915 31012766 7.510000e-71 278
23 TraesCS4B01G001100 chr7A 98.693 153 2 0 2125 2277 696619503 696619655 3.490000e-69 272
24 TraesCS4B01G001100 chr1B 99.329 149 1 0 2129 2277 49656457 49656605 1.260000e-68 270
25 TraesCS4B01G001100 chr5D 97.333 150 4 0 2128 2277 337141619 337141768 3.520000e-64 255


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G001100 chr4B 651933 654685 2752 True 5084.000000 5084 100.000000 1 2753 1 chr4B.!!$R1 2752
1 TraesCS4B01G001100 chr4D 1229904 1232350 2446 False 1057.000000 2152 91.421333 1 2661 3 chr4D.!!$F1 2660
2 TraesCS4B01G001100 chr4A 603538944 603541381 2437 True 869.333333 1605 87.197000 1 2661 3 chr4A.!!$R1 2660
3 TraesCS4B01G001100 chr6A 27772036 27773854 1818 False 782.500000 1382 87.139000 184 2118 2 chr6A.!!$F2 1934
4 TraesCS4B01G001100 chr6D 26350129 26352127 1998 False 755.000000 1356 80.701000 1 2121 2 chr6D.!!$F2 2120
5 TraesCS4B01G001100 chr6B 48551015 48553015 2000 False 752.000000 1319 82.183000 3 2121 2 chr6B.!!$F2 2118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 454 0.031716 ATGAGGCCTGAGCTAGTCCA 60.032 55.0 12.0 0.0 39.73 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 2494 0.037605 GACGACAACCCTGGACGATT 60.038 55.0 0.0 0.0 33.11 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 170 8.681806 ACATATGGATCGATCTATAGTGAAGTG 58.318 37.037 28.29 23.10 34.41 3.16
229 245 5.874897 ACAAGTACAACTACAAGGTACCA 57.125 39.130 15.94 0.00 38.47 3.25
230 246 6.429521 ACAAGTACAACTACAAGGTACCAT 57.570 37.500 15.94 0.00 38.47 3.55
231 247 6.461640 ACAAGTACAACTACAAGGTACCATC 58.538 40.000 15.94 0.00 38.47 3.51
360 430 6.800072 TCCTCCATATATACAACACACACA 57.200 37.500 0.00 0.00 0.00 3.72
361 431 6.578944 TCCTCCATATATACAACACACACAC 58.421 40.000 0.00 0.00 0.00 3.82
362 432 6.382859 TCCTCCATATATACAACACACACACT 59.617 38.462 0.00 0.00 0.00 3.55
363 433 7.562088 TCCTCCATATATACAACACACACACTA 59.438 37.037 0.00 0.00 0.00 2.74
364 434 7.867909 CCTCCATATATACAACACACACACTAG 59.132 40.741 0.00 0.00 0.00 2.57
366 436 9.143155 TCCATATATACAACACACACACTAGAT 57.857 33.333 0.00 0.00 0.00 1.98
367 437 9.196552 CCATATATACAACACACACACTAGATG 57.803 37.037 0.00 0.00 0.00 2.90
370 440 3.995199 ACAACACACACACTAGATGAGG 58.005 45.455 0.00 0.00 0.00 3.86
371 441 2.738846 CAACACACACACTAGATGAGGC 59.261 50.000 0.00 0.00 0.00 4.70
372 442 1.276421 ACACACACACTAGATGAGGCC 59.724 52.381 0.00 0.00 0.00 5.19
373 443 1.552337 CACACACACTAGATGAGGCCT 59.448 52.381 3.86 3.86 0.00 5.19
374 444 1.552337 ACACACACTAGATGAGGCCTG 59.448 52.381 12.00 0.00 0.00 4.85
375 445 1.827344 CACACACTAGATGAGGCCTGA 59.173 52.381 12.00 0.00 0.00 3.86
376 446 2.106566 ACACACTAGATGAGGCCTGAG 58.893 52.381 12.00 1.35 0.00 3.35
377 447 1.118838 ACACTAGATGAGGCCTGAGC 58.881 55.000 12.00 3.71 38.76 4.26
378 448 1.342874 ACACTAGATGAGGCCTGAGCT 60.343 52.381 16.03 16.03 39.73 4.09
379 449 2.091610 ACACTAGATGAGGCCTGAGCTA 60.092 50.000 16.62 16.62 39.73 3.32
380 450 2.557924 CACTAGATGAGGCCTGAGCTAG 59.442 54.545 34.20 34.20 39.73 3.42
381 451 2.176798 ACTAGATGAGGCCTGAGCTAGT 59.823 50.000 35.41 35.41 39.73 2.57
382 452 1.703411 AGATGAGGCCTGAGCTAGTC 58.297 55.000 12.00 0.00 39.73 2.59
383 453 0.678950 GATGAGGCCTGAGCTAGTCC 59.321 60.000 12.00 0.00 39.73 3.85
384 454 0.031716 ATGAGGCCTGAGCTAGTCCA 60.032 55.000 12.00 0.00 39.73 4.02
385 455 0.972983 TGAGGCCTGAGCTAGTCCAC 60.973 60.000 12.00 0.00 39.73 4.02
386 456 0.686112 GAGGCCTGAGCTAGTCCACT 60.686 60.000 12.00 0.00 39.73 4.00
387 457 0.975040 AGGCCTGAGCTAGTCCACTG 60.975 60.000 3.11 0.00 39.73 3.66
388 458 1.153469 GCCTGAGCTAGTCCACTGC 60.153 63.158 0.00 0.00 35.50 4.40
389 459 1.892819 GCCTGAGCTAGTCCACTGCA 61.893 60.000 0.00 0.00 35.50 4.41
390 460 0.108424 CCTGAGCTAGTCCACTGCAC 60.108 60.000 0.00 0.00 0.00 4.57
391 461 0.605083 CTGAGCTAGTCCACTGCACA 59.395 55.000 0.00 0.00 0.00 4.57
392 462 0.318441 TGAGCTAGTCCACTGCACAC 59.682 55.000 0.00 0.00 0.00 3.82
397 467 0.833949 TAGTCCACTGCACACCAACA 59.166 50.000 0.00 0.00 0.00 3.33
416 486 7.390440 CACCAACAAAAACCTCATACTAGATCA 59.610 37.037 0.00 0.00 0.00 2.92
438 508 2.447443 TCGAATCGATGGGGATCTAGG 58.553 52.381 0.00 0.00 0.00 3.02
450 520 5.727630 TGGGGATCTAGGTAGCTAATTCTT 58.272 41.667 2.81 0.00 0.00 2.52
466 536 5.397142 AATTCTTGATCTTCCTGGTTTGC 57.603 39.130 0.00 0.00 0.00 3.68
470 540 5.819991 TCTTGATCTTCCTGGTTTGCTTAT 58.180 37.500 0.00 0.00 0.00 1.73
500 570 0.253044 ATGGCGCACAAGGTACTCAT 59.747 50.000 10.83 0.00 38.49 2.90
501 571 0.391130 TGGCGCACAAGGTACTCATC 60.391 55.000 10.83 0.00 38.49 2.92
502 572 0.108138 GGCGCACAAGGTACTCATCT 60.108 55.000 10.83 0.00 38.49 2.90
503 573 1.281899 GCGCACAAGGTACTCATCTC 58.718 55.000 0.30 0.00 38.49 2.75
529 601 3.603697 TCCTCTCCATCTCCTAGCTAGA 58.396 50.000 22.70 4.53 0.00 2.43
532 604 5.190925 TCCTCTCCATCTCCTAGCTAGATAC 59.809 48.000 22.70 0.00 32.40 2.24
534 606 6.385759 CCTCTCCATCTCCTAGCTAGATACTA 59.614 46.154 22.70 3.25 32.40 1.82
535 607 7.419057 CCTCTCCATCTCCTAGCTAGATACTAG 60.419 48.148 22.70 10.66 37.46 2.57
536 608 7.193338 TCTCCATCTCCTAGCTAGATACTAGA 58.807 42.308 22.70 15.04 39.64 2.43
565 665 2.836888 GATCCCGGCCCCTTTAGG 59.163 66.667 0.00 0.00 0.00 2.69
578 678 2.091665 CCCTTTAGGTCCATGCATCCTT 60.092 50.000 10.46 0.00 33.34 3.36
581 681 4.098501 CCTTTAGGTCCATGCATCCTTTTC 59.901 45.833 10.46 0.00 33.34 2.29
582 682 4.591321 TTAGGTCCATGCATCCTTTTCT 57.409 40.909 10.46 0.83 33.34 2.52
583 683 3.463048 AGGTCCATGCATCCTTTTCTT 57.537 42.857 0.00 0.00 0.00 2.52
584 684 3.782992 AGGTCCATGCATCCTTTTCTTT 58.217 40.909 0.00 0.00 0.00 2.52
585 685 4.934356 AGGTCCATGCATCCTTTTCTTTA 58.066 39.130 0.00 0.00 0.00 1.85
586 686 4.952335 AGGTCCATGCATCCTTTTCTTTAG 59.048 41.667 0.00 0.00 0.00 1.85
605 705 7.310664 TCTTTAGCTTGCTCATGAAATCAAAG 58.689 34.615 0.00 0.92 0.00 2.77
703 818 8.822855 TGTATATATGGTTGTTGCTAGTTTTCG 58.177 33.333 0.00 0.00 0.00 3.46
760 885 7.485277 GCTTCTCTGATCTTCATTTCATTTGTG 59.515 37.037 0.00 0.00 0.00 3.33
781 909 0.894184 GCAGATCCAGGGCATCATGG 60.894 60.000 0.00 0.00 45.52 3.66
782 910 0.477204 CAGATCCAGGGCATCATGGT 59.523 55.000 0.00 0.00 44.55 3.55
863 1042 2.937799 GAGCAGATCAAGAAAGGAGCAG 59.062 50.000 0.00 0.00 0.00 4.24
883 1074 4.688021 CAGAGATCAGTTAGGTTAGGTGC 58.312 47.826 0.00 0.00 0.00 5.01
963 1159 2.620112 CGCCAGCAACCAGAACCAG 61.620 63.158 0.00 0.00 0.00 4.00
964 1160 1.228245 GCCAGCAACCAGAACCAGA 60.228 57.895 0.00 0.00 0.00 3.86
965 1161 0.823356 GCCAGCAACCAGAACCAGAA 60.823 55.000 0.00 0.00 0.00 3.02
966 1162 0.954452 CCAGCAACCAGAACCAGAAC 59.046 55.000 0.00 0.00 0.00 3.01
967 1163 0.954452 CAGCAACCAGAACCAGAACC 59.046 55.000 0.00 0.00 0.00 3.62
968 1164 0.550914 AGCAACCAGAACCAGAACCA 59.449 50.000 0.00 0.00 0.00 3.67
969 1165 0.954452 GCAACCAGAACCAGAACCAG 59.046 55.000 0.00 0.00 0.00 4.00
970 1166 1.476833 GCAACCAGAACCAGAACCAGA 60.477 52.381 0.00 0.00 0.00 3.86
971 1167 2.930950 CAACCAGAACCAGAACCAGAA 58.069 47.619 0.00 0.00 0.00 3.02
972 1168 2.618709 CAACCAGAACCAGAACCAGAAC 59.381 50.000 0.00 0.00 0.00 3.01
973 1169 1.143073 ACCAGAACCAGAACCAGAACC 59.857 52.381 0.00 0.00 0.00 3.62
974 1170 1.142870 CCAGAACCAGAACCAGAACCA 59.857 52.381 0.00 0.00 0.00 3.67
975 1171 2.498167 CAGAACCAGAACCAGAACCAG 58.502 52.381 0.00 0.00 0.00 4.00
1041 1237 2.047844 GAGAGCAGCAACAGCGGA 60.048 61.111 0.00 0.00 37.01 5.54
1044 1240 4.711949 AGCAGCAACAGCGGAGGG 62.712 66.667 0.00 0.00 37.01 4.30
1431 1633 2.264794 GGGCTCACCGTGTACCTG 59.735 66.667 10.93 0.00 36.48 4.00
1518 1720 1.375523 GGTGATCGCGTCCACCTTT 60.376 57.895 30.64 2.44 46.94 3.11
1791 2005 2.242926 TCAGTCAGGACTTCAGGAGTG 58.757 52.381 0.00 0.00 40.20 3.51
1842 2072 8.265165 TCATCAAGATCAGATCTTCAACAAAG 57.735 34.615 21.07 9.73 46.17 2.77
1866 2096 6.776116 AGTCCATCGTCATACCAATAACTAGA 59.224 38.462 0.00 0.00 0.00 2.43
1867 2097 7.040340 AGTCCATCGTCATACCAATAACTAGAG 60.040 40.741 0.00 0.00 0.00 2.43
1868 2098 7.002276 TCCATCGTCATACCAATAACTAGAGA 58.998 38.462 0.00 0.00 0.00 3.10
1869 2099 7.504574 TCCATCGTCATACCAATAACTAGAGAA 59.495 37.037 0.00 0.00 0.00 2.87
1870 2100 7.810282 CCATCGTCATACCAATAACTAGAGAAG 59.190 40.741 0.00 0.00 0.00 2.85
1871 2101 8.568794 CATCGTCATACCAATAACTAGAGAAGA 58.431 37.037 0.00 0.00 0.00 2.87
1888 2127 7.256756 AGAGAAGAACTTGCATTGCATATAC 57.743 36.000 12.95 5.37 38.76 1.47
1889 2128 6.825213 AGAGAAGAACTTGCATTGCATATACA 59.175 34.615 12.95 0.00 38.76 2.29
1931 2174 9.672673 TTAACTAGAATCTCTGCTTAATTTGCT 57.327 29.630 0.00 0.00 0.00 3.91
1974 2221 1.627329 TCATCTGGAGTTGCTTGCTCT 59.373 47.619 0.00 0.00 33.73 4.09
1975 2222 2.833943 TCATCTGGAGTTGCTTGCTCTA 59.166 45.455 0.00 0.00 33.73 2.43
2021 2268 4.778213 ATATGAGCTCCTTTTACTGCCA 57.222 40.909 12.15 0.00 0.00 4.92
2030 2277 3.084039 CCTTTTACTGCCAGCAGATTGA 58.916 45.455 25.66 8.20 46.30 2.57
2034 2281 6.127647 CCTTTTACTGCCAGCAGATTGATTAA 60.128 38.462 25.66 9.87 46.30 1.40
2043 2290 7.286087 TGCCAGCAGATTGATTAATTAGTGATT 59.714 33.333 0.00 0.00 0.00 2.57
2044 2291 7.594015 GCCAGCAGATTGATTAATTAGTGATTG 59.406 37.037 0.00 0.00 0.00 2.67
2099 2351 9.821240 ATGACTCTTATATACACTCCATCTCTT 57.179 33.333 0.00 0.00 0.00 2.85
2100 2352 9.072375 TGACTCTTATATACACTCCATCTCTTG 57.928 37.037 0.00 0.00 0.00 3.02
2122 2374 9.346005 TCTTGGATTATTGCATGCATATATAGG 57.654 33.333 23.37 7.60 0.00 2.57
2123 2375 8.467963 TTGGATTATTGCATGCATATATAGGG 57.532 34.615 23.37 0.00 0.00 3.53
2124 2376 7.005902 TGGATTATTGCATGCATATATAGGGG 58.994 38.462 23.37 0.00 0.00 4.79
2140 2392 0.179127 GGGGACCGAAACTACTACGC 60.179 60.000 0.00 0.00 40.86 4.42
2141 2393 0.524180 GGGACCGAAACTACTACGCG 60.524 60.000 3.53 3.53 0.00 6.01
2142 2394 0.524180 GGACCGAAACTACTACGCGG 60.524 60.000 12.47 0.00 46.83 6.46
2143 2395 0.447801 GACCGAAACTACTACGCGGA 59.552 55.000 12.47 0.00 44.43 5.54
2144 2396 0.169009 ACCGAAACTACTACGCGGAC 59.831 55.000 12.47 0.00 44.43 4.79
2145 2397 0.858961 CCGAAACTACTACGCGGACG 60.859 60.000 12.47 0.00 44.43 4.79
2146 2398 0.095245 CGAAACTACTACGCGGACGA 59.905 55.000 12.47 0.00 43.93 4.20
2147 2399 1.267732 CGAAACTACTACGCGGACGAT 60.268 52.381 12.47 0.00 43.93 3.73
2149 2401 3.539756 GAAACTACTACGCGGACGATAG 58.460 50.000 12.47 4.97 43.93 2.08
2164 2416 3.436817 CGATAGTAGCCTAGACGAACG 57.563 52.381 0.00 0.00 32.44 3.95
2165 2417 2.411289 CGATAGTAGCCTAGACGAACGC 60.411 54.545 0.00 0.00 32.44 4.84
2166 2418 2.322355 TAGTAGCCTAGACGAACGCT 57.678 50.000 0.00 0.00 35.34 5.07
2167 2419 0.733729 AGTAGCCTAGACGAACGCTG 59.266 55.000 0.00 0.00 32.76 5.18
2168 2420 0.248539 GTAGCCTAGACGAACGCTGG 60.249 60.000 0.00 0.00 32.76 4.85
2169 2421 0.393402 TAGCCTAGACGAACGCTGGA 60.393 55.000 0.00 0.00 32.76 3.86
2170 2422 1.516603 GCCTAGACGAACGCTGGAC 60.517 63.158 0.00 0.00 0.00 4.02
2186 2438 4.518217 GCTGGACGATATTTGATTGAACG 58.482 43.478 0.00 0.00 0.00 3.95
2187 2439 4.552767 GCTGGACGATATTTGATTGAACGG 60.553 45.833 0.00 0.00 0.00 4.44
2188 2440 4.509616 TGGACGATATTTGATTGAACGGT 58.490 39.130 0.00 0.00 0.00 4.83
2189 2441 4.331443 TGGACGATATTTGATTGAACGGTG 59.669 41.667 0.00 0.00 0.00 4.94
2190 2442 4.331717 GGACGATATTTGATTGAACGGTGT 59.668 41.667 0.00 0.00 0.00 4.16
2191 2443 5.163794 GGACGATATTTGATTGAACGGTGTT 60.164 40.000 0.00 0.00 0.00 3.32
2192 2444 5.627172 ACGATATTTGATTGAACGGTGTTG 58.373 37.500 0.00 0.00 0.00 3.33
2193 2445 5.027737 CGATATTTGATTGAACGGTGTTGG 58.972 41.667 0.00 0.00 0.00 3.77
2194 2446 5.391523 CGATATTTGATTGAACGGTGTTGGT 60.392 40.000 0.00 0.00 0.00 3.67
2195 2447 3.701532 TTTGATTGAACGGTGTTGGTC 57.298 42.857 0.00 0.00 0.00 4.02
2196 2448 2.333688 TGATTGAACGGTGTTGGTCA 57.666 45.000 0.00 0.00 0.00 4.02
2197 2449 2.217750 TGATTGAACGGTGTTGGTCAG 58.782 47.619 0.00 0.00 0.00 3.51
2198 2450 2.218603 GATTGAACGGTGTTGGTCAGT 58.781 47.619 0.00 0.00 0.00 3.41
2199 2451 2.116827 TTGAACGGTGTTGGTCAGTT 57.883 45.000 0.00 0.00 0.00 3.16
2200 2452 2.116827 TGAACGGTGTTGGTCAGTTT 57.883 45.000 0.00 0.00 0.00 2.66
2201 2453 2.438411 TGAACGGTGTTGGTCAGTTTT 58.562 42.857 0.00 0.00 0.00 2.43
2202 2454 2.162608 TGAACGGTGTTGGTCAGTTTTG 59.837 45.455 0.00 0.00 0.00 2.44
2203 2455 0.454196 ACGGTGTTGGTCAGTTTTGC 59.546 50.000 0.00 0.00 0.00 3.68
2204 2456 0.738389 CGGTGTTGGTCAGTTTTGCT 59.262 50.000 0.00 0.00 0.00 3.91
2205 2457 1.268539 CGGTGTTGGTCAGTTTTGCTC 60.269 52.381 0.00 0.00 0.00 4.26
2206 2458 1.067060 GGTGTTGGTCAGTTTTGCTCC 59.933 52.381 0.00 0.00 0.00 4.70
2207 2459 1.748493 GTGTTGGTCAGTTTTGCTCCA 59.252 47.619 0.00 0.00 0.00 3.86
2208 2460 1.748493 TGTTGGTCAGTTTTGCTCCAC 59.252 47.619 0.00 0.00 31.39 4.02
2209 2461 1.021202 TTGGTCAGTTTTGCTCCACG 58.979 50.000 0.00 0.00 31.39 4.94
2210 2462 1.282875 GGTCAGTTTTGCTCCACGC 59.717 57.895 0.00 0.00 39.77 5.34
2218 2470 3.908189 TGCTCCACGCATCAATGG 58.092 55.556 0.00 0.00 45.47 3.16
2219 2471 2.409055 TGCTCCACGCATCAATGGC 61.409 57.895 0.00 0.00 45.47 4.40
2220 2472 2.117156 GCTCCACGCATCAATGGCT 61.117 57.895 0.00 0.00 38.92 4.75
2221 2473 1.660560 GCTCCACGCATCAATGGCTT 61.661 55.000 0.00 0.00 38.92 4.35
2222 2474 0.099968 CTCCACGCATCAATGGCTTG 59.900 55.000 0.00 0.00 35.81 4.01
2223 2475 0.322366 TCCACGCATCAATGGCTTGA 60.322 50.000 0.00 2.63 45.15 3.02
2225 2477 1.268896 CCACGCATCAATGGCTTGATC 60.269 52.381 8.57 0.00 46.83 2.92
2226 2478 1.674441 CACGCATCAATGGCTTGATCT 59.326 47.619 8.57 0.00 46.83 2.75
2227 2479 1.674441 ACGCATCAATGGCTTGATCTG 59.326 47.619 8.57 7.31 46.83 2.90
2228 2480 1.599667 CGCATCAATGGCTTGATCTGC 60.600 52.381 8.57 10.34 46.83 4.26
2229 2481 1.681793 GCATCAATGGCTTGATCTGCT 59.318 47.619 13.33 0.00 46.83 4.24
2230 2482 2.543861 GCATCAATGGCTTGATCTGCTG 60.544 50.000 13.33 3.11 46.83 4.41
2231 2483 2.793288 TCAATGGCTTGATCTGCTGA 57.207 45.000 10.22 0.00 36.46 4.26
2232 2484 3.076079 TCAATGGCTTGATCTGCTGAA 57.924 42.857 0.00 0.00 36.46 3.02
2233 2485 3.628008 TCAATGGCTTGATCTGCTGAAT 58.372 40.909 0.00 1.89 36.46 2.57
2234 2486 3.630769 TCAATGGCTTGATCTGCTGAATC 59.369 43.478 0.00 0.00 36.46 2.52
2235 2487 1.660167 TGGCTTGATCTGCTGAATCG 58.340 50.000 0.00 0.00 0.00 3.34
2236 2488 1.065926 TGGCTTGATCTGCTGAATCGT 60.066 47.619 0.00 0.00 0.00 3.73
2237 2489 1.596727 GGCTTGATCTGCTGAATCGTC 59.403 52.381 0.00 0.00 0.00 4.20
2238 2490 2.548875 GCTTGATCTGCTGAATCGTCT 58.451 47.619 0.00 0.00 0.00 4.18
2239 2491 2.284684 GCTTGATCTGCTGAATCGTCTG 59.715 50.000 0.00 0.00 0.00 3.51
2240 2492 3.778618 CTTGATCTGCTGAATCGTCTGA 58.221 45.455 0.00 0.00 0.00 3.27
2241 2493 3.874392 TGATCTGCTGAATCGTCTGAA 57.126 42.857 0.00 0.00 0.00 3.02
2242 2494 4.192429 TGATCTGCTGAATCGTCTGAAA 57.808 40.909 0.00 0.00 0.00 2.69
2243 2495 4.568956 TGATCTGCTGAATCGTCTGAAAA 58.431 39.130 0.00 0.00 0.00 2.29
2244 2496 5.181009 TGATCTGCTGAATCGTCTGAAAAT 58.819 37.500 0.00 0.00 0.00 1.82
2245 2497 5.292834 TGATCTGCTGAATCGTCTGAAAATC 59.707 40.000 0.00 0.00 0.00 2.17
2246 2498 3.614176 TCTGCTGAATCGTCTGAAAATCG 59.386 43.478 0.00 0.00 0.00 3.34
2247 2499 3.325870 TGCTGAATCGTCTGAAAATCGT 58.674 40.909 0.00 0.00 0.00 3.73
2248 2500 3.367932 TGCTGAATCGTCTGAAAATCGTC 59.632 43.478 0.00 0.00 0.00 4.20
2249 2501 3.242123 GCTGAATCGTCTGAAAATCGTCC 60.242 47.826 0.00 0.00 0.00 4.79
2250 2502 3.920446 TGAATCGTCTGAAAATCGTCCA 58.080 40.909 0.00 0.00 0.00 4.02
2251 2503 3.926527 TGAATCGTCTGAAAATCGTCCAG 59.073 43.478 0.00 0.00 0.00 3.86
2252 2504 2.363788 TCGTCTGAAAATCGTCCAGG 57.636 50.000 0.00 0.00 0.00 4.45
2253 2505 1.067142 TCGTCTGAAAATCGTCCAGGG 60.067 52.381 0.00 0.00 0.00 4.45
2254 2506 1.337823 CGTCTGAAAATCGTCCAGGGT 60.338 52.381 0.00 0.00 0.00 4.34
2255 2507 2.779506 GTCTGAAAATCGTCCAGGGTT 58.220 47.619 0.00 0.00 0.00 4.11
2256 2508 2.484264 GTCTGAAAATCGTCCAGGGTTG 59.516 50.000 0.00 0.00 0.00 3.77
2257 2509 2.105821 TCTGAAAATCGTCCAGGGTTGT 59.894 45.455 0.00 0.00 0.00 3.32
2258 2510 2.484264 CTGAAAATCGTCCAGGGTTGTC 59.516 50.000 0.00 0.00 0.00 3.18
2259 2511 1.463444 GAAAATCGTCCAGGGTTGTCG 59.537 52.381 0.00 0.00 0.00 4.35
2260 2512 0.395312 AAATCGTCCAGGGTTGTCGT 59.605 50.000 0.00 0.00 0.00 4.34
2261 2513 0.037605 AATCGTCCAGGGTTGTCGTC 60.038 55.000 0.00 0.00 0.00 4.20
2262 2514 0.898789 ATCGTCCAGGGTTGTCGTCT 60.899 55.000 0.00 0.00 0.00 4.18
2263 2515 0.250858 TCGTCCAGGGTTGTCGTCTA 60.251 55.000 0.00 0.00 0.00 2.59
2264 2516 0.815734 CGTCCAGGGTTGTCGTCTAT 59.184 55.000 0.00 0.00 0.00 1.98
2265 2517 1.469251 CGTCCAGGGTTGTCGTCTATG 60.469 57.143 0.00 0.00 0.00 2.23
2266 2518 1.549170 GTCCAGGGTTGTCGTCTATGT 59.451 52.381 0.00 0.00 0.00 2.29
2267 2519 2.756760 GTCCAGGGTTGTCGTCTATGTA 59.243 50.000 0.00 0.00 0.00 2.29
2268 2520 3.021695 TCCAGGGTTGTCGTCTATGTAG 58.978 50.000 0.00 0.00 0.00 2.74
2269 2521 2.481449 CCAGGGTTGTCGTCTATGTAGC 60.481 54.545 0.00 0.00 0.00 3.58
2270 2522 2.165641 CAGGGTTGTCGTCTATGTAGCA 59.834 50.000 0.00 0.00 0.00 3.49
2271 2523 2.829720 AGGGTTGTCGTCTATGTAGCAA 59.170 45.455 0.00 0.00 0.00 3.91
2272 2524 2.928116 GGGTTGTCGTCTATGTAGCAAC 59.072 50.000 0.00 0.00 36.47 4.17
2273 2525 2.597305 GGTTGTCGTCTATGTAGCAACG 59.403 50.000 0.00 0.00 37.61 4.10
2274 2526 1.904144 TGTCGTCTATGTAGCAACGC 58.096 50.000 0.00 0.00 35.22 4.84
2275 2527 1.471287 TGTCGTCTATGTAGCAACGCT 59.529 47.619 0.00 0.00 43.41 5.07
2276 2528 2.110226 GTCGTCTATGTAGCAACGCTC 58.890 52.381 0.00 0.00 40.44 5.03
2277 2529 1.741145 TCGTCTATGTAGCAACGCTCA 59.259 47.619 0.00 0.00 40.44 4.26
2278 2530 2.357952 TCGTCTATGTAGCAACGCTCAT 59.642 45.455 0.00 0.00 40.44 2.90
2285 2539 0.750850 TAGCAACGCTCATAGGGGAC 59.249 55.000 0.00 0.00 40.44 4.46
2304 2558 5.455612 GGGGACGAAGGAATGGTGAATATAA 60.456 44.000 0.00 0.00 0.00 0.98
2333 2587 9.520204 ACATAGCTTGTTTCATGCAATTATTAC 57.480 29.630 0.00 0.00 37.06 1.89
2334 2588 9.518906 CATAGCTTGTTTCATGCAATTATTACA 57.481 29.630 0.00 0.00 37.06 2.41
2337 2591 9.439500 AGCTTGTTTCATGCAATTATTACATTT 57.561 25.926 0.00 0.00 37.06 2.32
2509 2764 8.443937 ACTAAAATAAACTTTGCTCGAGTCATC 58.556 33.333 15.13 0.00 0.00 2.92
2544 2801 2.654749 ACTCGATCGACATTGCTCAA 57.345 45.000 15.15 0.00 0.00 3.02
2565 2822 7.552050 TCAATCCTTGGGTTACATGAATTTT 57.448 32.000 0.00 0.00 0.00 1.82
2600 2857 4.782019 AGCACAGTTTTGACAAGTTGAA 57.218 36.364 10.54 0.00 0.00 2.69
2606 2863 4.030529 CAGTTTTGACAAGTTGAAGTTGCG 59.969 41.667 10.54 0.00 31.85 4.85
2608 2865 4.427096 TTTGACAAGTTGAAGTTGCGAA 57.573 36.364 10.54 8.64 31.85 4.70
2644 2903 4.787260 CCATGTGTGGTCATTTCATCAA 57.213 40.909 0.00 0.00 40.83 2.57
2708 2967 9.826574 TTATACAAGTCTTTGTCTAAACACAGT 57.173 29.630 0.00 0.00 44.00 3.55
2709 2968 8.732746 ATACAAGTCTTTGTCTAAACACAGTT 57.267 30.769 0.00 0.00 44.00 3.16
2710 2969 7.448748 ACAAGTCTTTGTCTAAACACAGTTT 57.551 32.000 0.51 0.51 44.00 2.66
2711 2970 7.882179 ACAAGTCTTTGTCTAAACACAGTTTT 58.118 30.769 0.03 0.00 44.00 2.43
2712 2971 8.021396 ACAAGTCTTTGTCTAAACACAGTTTTC 58.979 33.333 0.03 0.00 44.00 2.29
2713 2972 7.681939 AGTCTTTGTCTAAACACAGTTTTCA 57.318 32.000 0.03 0.00 35.21 2.69
2714 2973 8.106247 AGTCTTTGTCTAAACACAGTTTTCAA 57.894 30.769 0.03 2.98 35.21 2.69
2715 2974 8.573035 AGTCTTTGTCTAAACACAGTTTTCAAA 58.427 29.630 0.03 9.18 35.21 2.69
2716 2975 8.850452 GTCTTTGTCTAAACACAGTTTTCAAAG 58.150 33.333 22.74 22.74 39.87 2.77
2717 2976 7.540745 TCTTTGTCTAAACACAGTTTTCAAAGC 59.459 33.333 23.25 8.55 39.01 3.51
2718 2977 6.260870 TGTCTAAACACAGTTTTCAAAGCA 57.739 33.333 0.03 0.00 0.00 3.91
2719 2978 6.682746 TGTCTAAACACAGTTTTCAAAGCAA 58.317 32.000 0.03 0.00 0.00 3.91
2720 2979 7.148641 TGTCTAAACACAGTTTTCAAAGCAAA 58.851 30.769 0.03 0.00 0.00 3.68
2721 2980 7.653713 TGTCTAAACACAGTTTTCAAAGCAAAA 59.346 29.630 0.03 0.00 0.00 2.44
2722 2981 7.949962 GTCTAAACACAGTTTTCAAAGCAAAAC 59.050 33.333 0.03 2.71 43.73 2.43
2723 2982 5.605564 AACACAGTTTTCAAAGCAAAACC 57.394 34.783 6.52 0.00 44.23 3.27
2724 2983 4.000325 ACACAGTTTTCAAAGCAAAACCC 59.000 39.130 6.52 0.00 44.23 4.11
2725 2984 4.252878 CACAGTTTTCAAAGCAAAACCCT 58.747 39.130 6.52 0.00 44.23 4.34
2726 2985 5.046950 ACACAGTTTTCAAAGCAAAACCCTA 60.047 36.000 6.52 0.00 44.23 3.53
2727 2986 5.872070 CACAGTTTTCAAAGCAAAACCCTAA 59.128 36.000 6.52 0.00 44.23 2.69
2728 2987 6.538381 CACAGTTTTCAAAGCAAAACCCTAAT 59.462 34.615 6.52 0.00 44.23 1.73
2729 2988 7.708752 CACAGTTTTCAAAGCAAAACCCTAATA 59.291 33.333 6.52 0.00 44.23 0.98
2730 2989 7.709182 ACAGTTTTCAAAGCAAAACCCTAATAC 59.291 33.333 6.52 0.00 44.23 1.89
2731 2990 7.170828 CAGTTTTCAAAGCAAAACCCTAATACC 59.829 37.037 6.52 0.00 44.23 2.73
2732 2991 6.732896 TTTCAAAGCAAAACCCTAATACCA 57.267 33.333 0.00 0.00 0.00 3.25
2733 2992 6.926630 TTCAAAGCAAAACCCTAATACCAT 57.073 33.333 0.00 0.00 0.00 3.55
2734 2993 8.423906 TTTCAAAGCAAAACCCTAATACCATA 57.576 30.769 0.00 0.00 0.00 2.74
2735 2994 8.602472 TTCAAAGCAAAACCCTAATACCATAT 57.398 30.769 0.00 0.00 0.00 1.78
2736 2995 8.006298 TCAAAGCAAAACCCTAATACCATATG 57.994 34.615 0.00 0.00 0.00 1.78
2737 2996 6.976934 AAGCAAAACCCTAATACCATATGG 57.023 37.500 20.68 20.68 42.17 2.74
2751 3010 4.659111 CCATATGGTTGTGTGCATCAAT 57.341 40.909 14.09 0.00 0.00 2.57
2752 3011 5.013568 CCATATGGTTGTGTGCATCAATT 57.986 39.130 14.09 3.19 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 3.879295 AGCAGTATGTGTACATGGCATTC 59.121 43.478 7.73 0.00 39.31 2.67
130 146 9.467796 TTCACTTCACTATAGATCGATCCATAT 57.532 33.333 21.66 15.45 0.00 1.78
164 180 9.815306 AGCTAATTCACCTCTCTATAGTTATCA 57.185 33.333 0.00 0.00 0.00 2.15
176 192 1.566231 CCCCCAAGCTAATTCACCTCT 59.434 52.381 0.00 0.00 0.00 3.69
179 195 0.324275 TGCCCCCAAGCTAATTCACC 60.324 55.000 0.00 0.00 0.00 4.02
220 236 3.074412 GAGGTGTGTTGATGGTACCTTG 58.926 50.000 14.36 0.00 41.58 3.61
229 245 2.372264 GGATGCATGAGGTGTGTTGAT 58.628 47.619 2.46 0.00 0.00 2.57
230 246 1.614051 GGGATGCATGAGGTGTGTTGA 60.614 52.381 2.46 0.00 0.00 3.18
231 247 0.813184 GGGATGCATGAGGTGTGTTG 59.187 55.000 2.46 0.00 0.00 3.33
280 317 1.208614 GGAAGACTTGCTTGCTGCG 59.791 57.895 0.00 0.00 46.63 5.18
360 430 2.176798 ACTAGCTCAGGCCTCATCTAGT 59.823 50.000 13.83 13.83 39.73 2.57
361 431 2.819608 GACTAGCTCAGGCCTCATCTAG 59.180 54.545 12.51 12.51 39.73 2.43
362 432 2.870175 GACTAGCTCAGGCCTCATCTA 58.130 52.381 0.00 0.00 39.73 1.98
363 433 1.703411 GACTAGCTCAGGCCTCATCT 58.297 55.000 0.00 0.00 39.73 2.90
370 440 1.153469 GCAGTGGACTAGCTCAGGC 60.153 63.158 0.00 0.00 39.06 4.85
371 441 0.108424 GTGCAGTGGACTAGCTCAGG 60.108 60.000 7.64 0.00 0.00 3.86
372 442 0.605083 TGTGCAGTGGACTAGCTCAG 59.395 55.000 16.26 0.00 0.00 3.35
373 443 0.318441 GTGTGCAGTGGACTAGCTCA 59.682 55.000 16.26 0.00 0.00 4.26
374 444 0.390472 GGTGTGCAGTGGACTAGCTC 60.390 60.000 16.26 1.94 0.00 4.09
375 445 1.121407 TGGTGTGCAGTGGACTAGCT 61.121 55.000 16.26 0.00 0.00 3.32
376 446 0.250295 TTGGTGTGCAGTGGACTAGC 60.250 55.000 16.26 11.82 0.00 3.42
377 447 1.202639 TGTTGGTGTGCAGTGGACTAG 60.203 52.381 16.26 0.00 0.00 2.57
378 448 0.833949 TGTTGGTGTGCAGTGGACTA 59.166 50.000 16.26 0.00 0.00 2.59
379 449 0.034574 TTGTTGGTGTGCAGTGGACT 60.035 50.000 16.26 0.00 0.00 3.85
380 450 0.814457 TTTGTTGGTGTGCAGTGGAC 59.186 50.000 8.00 8.00 0.00 4.02
381 451 1.550327 TTTTGTTGGTGTGCAGTGGA 58.450 45.000 0.00 0.00 0.00 4.02
382 452 1.999024 GTTTTTGTTGGTGTGCAGTGG 59.001 47.619 0.00 0.00 0.00 4.00
383 453 1.999024 GGTTTTTGTTGGTGTGCAGTG 59.001 47.619 0.00 0.00 0.00 3.66
384 454 1.899142 AGGTTTTTGTTGGTGTGCAGT 59.101 42.857 0.00 0.00 0.00 4.40
385 455 2.094286 TGAGGTTTTTGTTGGTGTGCAG 60.094 45.455 0.00 0.00 0.00 4.41
386 456 1.895798 TGAGGTTTTTGTTGGTGTGCA 59.104 42.857 0.00 0.00 0.00 4.57
387 457 2.663826 TGAGGTTTTTGTTGGTGTGC 57.336 45.000 0.00 0.00 0.00 4.57
388 458 5.514274 AGTATGAGGTTTTTGTTGGTGTG 57.486 39.130 0.00 0.00 0.00 3.82
389 459 6.597562 TCTAGTATGAGGTTTTTGTTGGTGT 58.402 36.000 0.00 0.00 0.00 4.16
390 460 7.390440 TGATCTAGTATGAGGTTTTTGTTGGTG 59.610 37.037 0.00 0.00 0.00 4.17
391 461 7.458397 TGATCTAGTATGAGGTTTTTGTTGGT 58.542 34.615 0.00 0.00 0.00 3.67
392 462 7.921786 TGATCTAGTATGAGGTTTTTGTTGG 57.078 36.000 0.00 0.00 0.00 3.77
397 467 9.838339 ATTCGATTGATCTAGTATGAGGTTTTT 57.162 29.630 0.00 0.00 0.00 1.94
416 486 3.449018 CCTAGATCCCCATCGATTCGATT 59.551 47.826 18.52 4.40 44.59 3.34
438 508 6.587273 ACCAGGAAGATCAAGAATTAGCTAC 58.413 40.000 0.00 0.00 0.00 3.58
450 520 5.188434 CAGATAAGCAAACCAGGAAGATCA 58.812 41.667 0.00 0.00 0.00 2.92
466 536 3.047796 GCGCCATGAAATTGCAGATAAG 58.952 45.455 0.00 0.00 34.03 1.73
470 540 0.109179 GTGCGCCATGAAATTGCAGA 60.109 50.000 4.18 0.00 34.03 4.26
500 570 5.678142 AGGAGATGGAGAGGAAATAGAGA 57.322 43.478 0.00 0.00 0.00 3.10
501 571 5.418840 GCTAGGAGATGGAGAGGAAATAGAG 59.581 48.000 0.00 0.00 0.00 2.43
502 572 5.075761 AGCTAGGAGATGGAGAGGAAATAGA 59.924 44.000 0.00 0.00 0.00 1.98
503 573 5.332743 AGCTAGGAGATGGAGAGGAAATAG 58.667 45.833 0.00 0.00 0.00 1.73
529 601 5.654650 GGGATCGATGAACCTGATCTAGTAT 59.345 44.000 0.54 0.00 38.79 2.12
532 604 3.119673 CGGGATCGATGAACCTGATCTAG 60.120 52.174 0.54 0.00 38.79 2.43
534 606 1.615883 CGGGATCGATGAACCTGATCT 59.384 52.381 0.54 0.00 38.79 2.75
535 607 1.337260 CCGGGATCGATGAACCTGATC 60.337 57.143 0.54 0.00 33.43 2.92
536 608 0.681733 CCGGGATCGATGAACCTGAT 59.318 55.000 0.54 0.00 33.43 2.90
565 665 4.400567 AGCTAAAGAAAAGGATGCATGGAC 59.599 41.667 2.46 0.00 0.00 4.02
578 678 7.218228 TGATTTCATGAGCAAGCTAAAGAAA 57.782 32.000 11.09 11.09 0.00 2.52
581 681 6.530534 CCTTTGATTTCATGAGCAAGCTAAAG 59.469 38.462 0.00 4.90 0.00 1.85
582 682 6.209192 TCCTTTGATTTCATGAGCAAGCTAAA 59.791 34.615 0.00 0.00 0.00 1.85
583 683 5.711506 TCCTTTGATTTCATGAGCAAGCTAA 59.288 36.000 0.00 0.00 0.00 3.09
584 684 5.255687 TCCTTTGATTTCATGAGCAAGCTA 58.744 37.500 0.00 0.00 0.00 3.32
585 685 4.084287 TCCTTTGATTTCATGAGCAAGCT 58.916 39.130 0.00 0.00 0.00 3.74
586 686 4.445452 TCCTTTGATTTCATGAGCAAGC 57.555 40.909 0.00 0.00 0.00 4.01
605 705 3.017442 GGGAAACAGCTCCTTGTTATCC 58.983 50.000 0.00 0.00 40.24 2.59
679 791 8.951787 ACGAAAACTAGCAACAACCATATATA 57.048 30.769 0.00 0.00 0.00 0.86
682 794 5.163893 CGACGAAAACTAGCAACAACCATAT 60.164 40.000 0.00 0.00 0.00 1.78
703 818 5.118664 TCAACACAAAAGAGATCGAATCGAC 59.881 40.000 7.77 2.18 39.18 4.20
760 885 0.178998 ATGATGCCCTGGATCTGCAC 60.179 55.000 0.00 0.00 37.92 4.57
823 966 3.307059 GCTCTTCTTCTTCTTGGTGGCTA 60.307 47.826 0.00 0.00 0.00 3.93
824 967 2.551938 GCTCTTCTTCTTCTTGGTGGCT 60.552 50.000 0.00 0.00 0.00 4.75
825 968 1.809547 GCTCTTCTTCTTCTTGGTGGC 59.190 52.381 0.00 0.00 0.00 5.01
863 1042 4.402793 TCTGCACCTAACCTAACTGATCTC 59.597 45.833 0.00 0.00 0.00 2.75
883 1074 4.007457 CCACCTGTTGGCCATCTG 57.993 61.111 6.09 10.25 39.07 2.90
963 1159 1.860484 GCTGCTGCTGGTTCTGGTTC 61.860 60.000 8.53 0.00 36.03 3.62
964 1160 1.900498 GCTGCTGCTGGTTCTGGTT 60.900 57.895 8.53 0.00 36.03 3.67
965 1161 2.282040 GCTGCTGCTGGTTCTGGT 60.282 61.111 8.53 0.00 36.03 4.00
966 1162 2.281970 TGCTGCTGCTGGTTCTGG 60.282 61.111 17.00 0.00 40.48 3.86
967 1163 2.979197 GCTGCTGCTGCTGGTTCTG 61.979 63.158 22.10 3.73 40.48 3.02
968 1164 2.672307 GCTGCTGCTGCTGGTTCT 60.672 61.111 22.10 0.00 40.48 3.01
969 1165 2.979197 CTGCTGCTGCTGCTGGTTC 61.979 63.158 27.67 7.80 40.48 3.62
970 1166 2.984155 CTGCTGCTGCTGCTGGTT 60.984 61.111 27.67 0.00 40.48 3.67
1017 1213 4.069232 TTGCTGCTCTCCCCGTCG 62.069 66.667 0.00 0.00 0.00 5.12
1518 1720 3.583276 CTCGTAGGTGGCGTTGGCA 62.583 63.158 0.00 0.00 42.47 4.92
1608 1810 0.687354 GAGGAAGAGGAACACCAGCA 59.313 55.000 0.00 0.00 0.00 4.41
1842 2072 6.978338 TCTAGTTATTGGTATGACGATGGAC 58.022 40.000 0.00 0.00 0.00 4.02
1866 2096 7.501559 AGATGTATATGCAATGCAAGTTCTTCT 59.498 33.333 13.45 12.71 43.62 2.85
1867 2097 7.646314 AGATGTATATGCAATGCAAGTTCTTC 58.354 34.615 13.45 10.85 43.62 2.87
1868 2098 7.578310 AGATGTATATGCAATGCAAGTTCTT 57.422 32.000 13.45 0.00 43.62 2.52
1869 2099 7.094890 GCTAGATGTATATGCAATGCAAGTTCT 60.095 37.037 13.45 11.10 43.62 3.01
1870 2100 7.020010 GCTAGATGTATATGCAATGCAAGTTC 58.980 38.462 13.45 4.52 43.62 3.01
1871 2101 6.487668 TGCTAGATGTATATGCAATGCAAGTT 59.512 34.615 13.45 0.00 43.62 2.66
1888 2127 7.661968 TCTAGTTAATTACCAGCTGCTAGATG 58.338 38.462 8.66 0.00 31.76 2.90
1889 2128 7.841282 TCTAGTTAATTACCAGCTGCTAGAT 57.159 36.000 8.66 0.00 31.76 1.98
1997 2244 7.553504 TGGCAGTAAAAGGAGCTCATATATA 57.446 36.000 17.19 0.00 0.00 0.86
1998 2245 6.439636 TGGCAGTAAAAGGAGCTCATATAT 57.560 37.500 17.19 0.75 0.00 0.86
1999 2246 5.743130 GCTGGCAGTAAAAGGAGCTCATATA 60.743 44.000 17.19 2.78 0.00 0.86
2000 2247 4.712476 CTGGCAGTAAAAGGAGCTCATAT 58.288 43.478 17.19 3.85 0.00 1.78
2001 2248 3.682718 GCTGGCAGTAAAAGGAGCTCATA 60.683 47.826 17.19 0.00 0.00 2.15
2055 2302 9.739276 AAGAGTCATACATTTGGAGATTTTGTA 57.261 29.630 0.00 0.00 0.00 2.41
2056 2303 8.641498 AAGAGTCATACATTTGGAGATTTTGT 57.359 30.769 0.00 0.00 0.00 2.83
2099 2351 7.005902 CCCCTATATATGCATGCAATAATCCA 58.994 38.462 26.68 6.22 0.00 3.41
2100 2352 7.175641 GTCCCCTATATATGCATGCAATAATCC 59.824 40.741 26.68 0.90 0.00 3.01
2121 2373 0.179127 GCGTAGTAGTTTCGGTCCCC 60.179 60.000 0.00 0.00 0.00 4.81
2122 2374 0.524180 CGCGTAGTAGTTTCGGTCCC 60.524 60.000 0.00 0.00 0.00 4.46
2123 2375 0.524180 CCGCGTAGTAGTTTCGGTCC 60.524 60.000 4.92 0.00 35.75 4.46
2124 2376 0.447801 TCCGCGTAGTAGTTTCGGTC 59.552 55.000 4.92 0.00 40.81 4.79
2127 2379 0.095245 TCGTCCGCGTAGTAGTTTCG 59.905 55.000 4.92 0.00 39.49 3.46
2128 2380 2.465210 ATCGTCCGCGTAGTAGTTTC 57.535 50.000 4.92 0.00 39.49 2.78
2130 2382 2.555199 ACTATCGTCCGCGTAGTAGTT 58.445 47.619 4.92 0.00 39.49 2.24
2131 2383 2.231215 ACTATCGTCCGCGTAGTAGT 57.769 50.000 4.92 3.32 39.49 2.73
2132 2384 2.091899 GCTACTATCGTCCGCGTAGTAG 59.908 54.545 25.17 25.17 45.19 2.57
2133 2385 2.061773 GCTACTATCGTCCGCGTAGTA 58.938 52.381 4.92 9.24 36.79 1.82
2136 2388 0.250038 AGGCTACTATCGTCCGCGTA 60.250 55.000 4.92 0.00 39.49 4.42
2138 2390 0.443088 CTAGGCTACTATCGTCCGCG 59.557 60.000 0.00 0.00 39.92 6.46
2140 2392 1.725706 CGTCTAGGCTACTATCGTCCG 59.274 57.143 0.00 0.00 0.00 4.79
2141 2393 3.037431 TCGTCTAGGCTACTATCGTCC 57.963 52.381 0.00 0.00 32.37 4.79
2142 2394 3.121058 CGTTCGTCTAGGCTACTATCGTC 60.121 52.174 0.00 0.00 32.37 4.20
2143 2395 2.799412 CGTTCGTCTAGGCTACTATCGT 59.201 50.000 0.00 0.00 32.37 3.73
2144 2396 2.411289 GCGTTCGTCTAGGCTACTATCG 60.411 54.545 0.00 0.00 0.00 2.92
2145 2397 2.807392 AGCGTTCGTCTAGGCTACTATC 59.193 50.000 0.00 0.00 37.48 2.08
2146 2398 2.548904 CAGCGTTCGTCTAGGCTACTAT 59.451 50.000 0.00 0.00 37.16 2.12
2147 2399 1.938577 CAGCGTTCGTCTAGGCTACTA 59.061 52.381 0.00 0.00 37.16 1.82
2149 2401 0.248539 CCAGCGTTCGTCTAGGCTAC 60.249 60.000 0.00 0.00 37.16 3.58
2151 2403 1.677966 TCCAGCGTTCGTCTAGGCT 60.678 57.895 0.00 0.00 39.65 4.58
2152 2404 1.516603 GTCCAGCGTTCGTCTAGGC 60.517 63.158 0.00 0.00 0.00 3.93
2153 2405 1.226323 CGTCCAGCGTTCGTCTAGG 60.226 63.158 0.00 0.00 35.54 3.02
2159 2411 2.190161 TCAAATATCGTCCAGCGTTCG 58.810 47.619 0.00 0.00 42.13 3.95
2160 2412 4.270084 TCAATCAAATATCGTCCAGCGTTC 59.730 41.667 0.00 0.00 42.13 3.95
2161 2413 4.188462 TCAATCAAATATCGTCCAGCGTT 58.812 39.130 0.00 0.00 42.13 4.84
2162 2414 3.792401 TCAATCAAATATCGTCCAGCGT 58.208 40.909 0.00 0.00 42.13 5.07
2164 2416 4.518217 CGTTCAATCAAATATCGTCCAGC 58.482 43.478 0.00 0.00 0.00 4.85
2165 2417 4.570772 ACCGTTCAATCAAATATCGTCCAG 59.429 41.667 0.00 0.00 0.00 3.86
2166 2418 4.331443 CACCGTTCAATCAAATATCGTCCA 59.669 41.667 0.00 0.00 0.00 4.02
2167 2419 4.331717 ACACCGTTCAATCAAATATCGTCC 59.668 41.667 0.00 0.00 0.00 4.79
2168 2420 5.464965 ACACCGTTCAATCAAATATCGTC 57.535 39.130 0.00 0.00 0.00 4.20
2169 2421 5.391523 CCAACACCGTTCAATCAAATATCGT 60.392 40.000 0.00 0.00 0.00 3.73
2170 2422 5.027737 CCAACACCGTTCAATCAAATATCG 58.972 41.667 0.00 0.00 0.00 2.92
2171 2423 5.949735 ACCAACACCGTTCAATCAAATATC 58.050 37.500 0.00 0.00 0.00 1.63
2172 2424 5.475220 TGACCAACACCGTTCAATCAAATAT 59.525 36.000 0.00 0.00 0.00 1.28
2173 2425 4.822350 TGACCAACACCGTTCAATCAAATA 59.178 37.500 0.00 0.00 0.00 1.40
2174 2426 3.634448 TGACCAACACCGTTCAATCAAAT 59.366 39.130 0.00 0.00 0.00 2.32
2175 2427 3.017442 TGACCAACACCGTTCAATCAAA 58.983 40.909 0.00 0.00 0.00 2.69
2176 2428 2.616376 CTGACCAACACCGTTCAATCAA 59.384 45.455 0.00 0.00 0.00 2.57
2177 2429 2.217750 CTGACCAACACCGTTCAATCA 58.782 47.619 0.00 0.00 0.00 2.57
2178 2430 2.218603 ACTGACCAACACCGTTCAATC 58.781 47.619 0.00 0.00 0.00 2.67
2179 2431 2.341846 ACTGACCAACACCGTTCAAT 57.658 45.000 0.00 0.00 0.00 2.57
2180 2432 2.116827 AACTGACCAACACCGTTCAA 57.883 45.000 0.00 0.00 0.00 2.69
2181 2433 2.116827 AAACTGACCAACACCGTTCA 57.883 45.000 0.00 0.00 0.00 3.18
2182 2434 2.792749 CAAAACTGACCAACACCGTTC 58.207 47.619 0.00 0.00 0.00 3.95
2183 2435 1.135228 GCAAAACTGACCAACACCGTT 60.135 47.619 0.00 0.00 0.00 4.44
2184 2436 0.454196 GCAAAACTGACCAACACCGT 59.546 50.000 0.00 0.00 0.00 4.83
2185 2437 0.738389 AGCAAAACTGACCAACACCG 59.262 50.000 0.00 0.00 0.00 4.94
2186 2438 1.067060 GGAGCAAAACTGACCAACACC 59.933 52.381 0.00 0.00 0.00 4.16
2187 2439 1.748493 TGGAGCAAAACTGACCAACAC 59.252 47.619 0.00 0.00 0.00 3.32
2188 2440 1.748493 GTGGAGCAAAACTGACCAACA 59.252 47.619 0.00 0.00 32.32 3.33
2189 2441 1.268539 CGTGGAGCAAAACTGACCAAC 60.269 52.381 0.00 0.00 32.32 3.77
2190 2442 1.021202 CGTGGAGCAAAACTGACCAA 58.979 50.000 0.00 0.00 32.32 3.67
2191 2443 2.701587 CGTGGAGCAAAACTGACCA 58.298 52.632 0.00 0.00 0.00 4.02
2202 2454 3.787788 CAAGCCATTGATGCGTGGAGC 62.788 57.143 0.00 0.00 42.00 4.70
2203 2455 0.099968 CAAGCCATTGATGCGTGGAG 59.900 55.000 0.00 0.00 38.83 3.86
2204 2456 0.322366 TCAAGCCATTGATGCGTGGA 60.322 50.000 0.00 0.00 40.54 4.02
2205 2457 2.182496 TCAAGCCATTGATGCGTGG 58.818 52.632 0.00 0.00 40.54 4.94
2213 2465 3.548214 CGATTCAGCAGATCAAGCCATTG 60.548 47.826 6.55 0.26 37.80 2.82
2214 2466 2.617308 CGATTCAGCAGATCAAGCCATT 59.383 45.455 6.55 0.00 0.00 3.16
2215 2467 2.219458 CGATTCAGCAGATCAAGCCAT 58.781 47.619 6.55 0.00 0.00 4.40
2216 2468 1.065926 ACGATTCAGCAGATCAAGCCA 60.066 47.619 6.55 0.00 0.00 4.75
2217 2469 1.596727 GACGATTCAGCAGATCAAGCC 59.403 52.381 6.55 0.00 0.00 4.35
2218 2470 2.284684 CAGACGATTCAGCAGATCAAGC 59.715 50.000 0.00 0.00 0.00 4.01
2219 2471 3.778618 TCAGACGATTCAGCAGATCAAG 58.221 45.455 0.00 0.00 0.00 3.02
2220 2472 3.874392 TCAGACGATTCAGCAGATCAA 57.126 42.857 0.00 0.00 0.00 2.57
2221 2473 3.874392 TTCAGACGATTCAGCAGATCA 57.126 42.857 0.00 0.00 0.00 2.92
2222 2474 5.556006 CGATTTTCAGACGATTCAGCAGATC 60.556 44.000 0.00 0.00 0.00 2.75
2223 2475 4.269603 CGATTTTCAGACGATTCAGCAGAT 59.730 41.667 0.00 0.00 0.00 2.90
2224 2476 3.614176 CGATTTTCAGACGATTCAGCAGA 59.386 43.478 0.00 0.00 0.00 4.26
2225 2477 3.369147 ACGATTTTCAGACGATTCAGCAG 59.631 43.478 0.00 0.00 0.00 4.24
2226 2478 3.325870 ACGATTTTCAGACGATTCAGCA 58.674 40.909 0.00 0.00 0.00 4.41
2227 2479 3.242123 GGACGATTTTCAGACGATTCAGC 60.242 47.826 0.00 0.00 0.00 4.26
2228 2480 3.926527 TGGACGATTTTCAGACGATTCAG 59.073 43.478 0.00 0.00 0.00 3.02
2229 2481 3.920446 TGGACGATTTTCAGACGATTCA 58.080 40.909 0.00 0.00 0.00 2.57
2230 2482 3.307242 CCTGGACGATTTTCAGACGATTC 59.693 47.826 0.00 0.00 0.00 2.52
2231 2483 3.262420 CCTGGACGATTTTCAGACGATT 58.738 45.455 0.00 0.00 0.00 3.34
2232 2484 2.418746 CCCTGGACGATTTTCAGACGAT 60.419 50.000 0.00 0.00 0.00 3.73
2233 2485 1.067142 CCCTGGACGATTTTCAGACGA 60.067 52.381 0.00 0.00 0.00 4.20
2234 2486 1.337823 ACCCTGGACGATTTTCAGACG 60.338 52.381 0.00 0.00 0.00 4.18
2235 2487 2.474410 ACCCTGGACGATTTTCAGAC 57.526 50.000 0.00 0.00 0.00 3.51
2236 2488 2.105821 ACAACCCTGGACGATTTTCAGA 59.894 45.455 0.00 0.00 0.00 3.27
2237 2489 2.484264 GACAACCCTGGACGATTTTCAG 59.516 50.000 0.00 0.00 0.00 3.02
2238 2490 2.500229 GACAACCCTGGACGATTTTCA 58.500 47.619 0.00 0.00 0.00 2.69
2239 2491 1.463444 CGACAACCCTGGACGATTTTC 59.537 52.381 0.00 0.00 0.00 2.29
2240 2492 1.202722 ACGACAACCCTGGACGATTTT 60.203 47.619 0.00 0.00 33.11 1.82
2241 2493 0.395312 ACGACAACCCTGGACGATTT 59.605 50.000 0.00 0.00 33.11 2.17
2242 2494 0.037605 GACGACAACCCTGGACGATT 60.038 55.000 0.00 0.00 33.11 3.34
2243 2495 0.898789 AGACGACAACCCTGGACGAT 60.899 55.000 0.00 0.00 33.11 3.73
2244 2496 0.250858 TAGACGACAACCCTGGACGA 60.251 55.000 0.00 0.00 33.11 4.20
2245 2497 0.815734 ATAGACGACAACCCTGGACG 59.184 55.000 0.00 0.00 34.33 4.79
2246 2498 1.549170 ACATAGACGACAACCCTGGAC 59.451 52.381 0.00 0.00 0.00 4.02
2247 2499 1.933021 ACATAGACGACAACCCTGGA 58.067 50.000 0.00 0.00 0.00 3.86
2248 2500 2.481449 GCTACATAGACGACAACCCTGG 60.481 54.545 0.00 0.00 0.00 4.45
2249 2501 2.165641 TGCTACATAGACGACAACCCTG 59.834 50.000 0.00 0.00 0.00 4.45
2250 2502 2.453521 TGCTACATAGACGACAACCCT 58.546 47.619 0.00 0.00 0.00 4.34
2251 2503 2.928116 GTTGCTACATAGACGACAACCC 59.072 50.000 0.00 0.00 33.10 4.11
2252 2504 2.597305 CGTTGCTACATAGACGACAACC 59.403 50.000 0.00 0.00 37.69 3.77
2253 2505 2.027688 GCGTTGCTACATAGACGACAAC 59.972 50.000 0.00 0.00 37.69 3.32
2254 2506 2.094906 AGCGTTGCTACATAGACGACAA 60.095 45.455 0.00 0.00 36.99 3.18
2255 2507 1.471287 AGCGTTGCTACATAGACGACA 59.529 47.619 0.00 0.00 36.99 4.35
2256 2508 2.110226 GAGCGTTGCTACATAGACGAC 58.890 52.381 0.00 0.00 39.88 4.34
2257 2509 1.741145 TGAGCGTTGCTACATAGACGA 59.259 47.619 0.00 0.00 39.88 4.20
2258 2510 2.188837 TGAGCGTTGCTACATAGACG 57.811 50.000 0.00 0.00 39.88 4.18
2259 2511 4.230657 CCTATGAGCGTTGCTACATAGAC 58.769 47.826 24.08 3.40 42.36 2.59
2260 2512 3.255888 CCCTATGAGCGTTGCTACATAGA 59.744 47.826 24.08 6.65 42.36 1.98
2261 2513 3.579709 CCCTATGAGCGTTGCTACATAG 58.420 50.000 19.82 19.82 39.88 2.23
2262 2514 2.299013 CCCCTATGAGCGTTGCTACATA 59.701 50.000 0.00 1.81 39.88 2.29
2263 2515 1.070758 CCCCTATGAGCGTTGCTACAT 59.929 52.381 0.00 0.71 39.88 2.29
2264 2516 0.464036 CCCCTATGAGCGTTGCTACA 59.536 55.000 0.00 0.00 39.88 2.74
2265 2517 0.750850 TCCCCTATGAGCGTTGCTAC 59.249 55.000 0.00 0.00 39.88 3.58
2266 2518 0.750850 GTCCCCTATGAGCGTTGCTA 59.249 55.000 0.00 0.00 39.88 3.49
2267 2519 1.522569 GTCCCCTATGAGCGTTGCT 59.477 57.895 0.00 0.00 43.88 3.91
2268 2520 1.883084 CGTCCCCTATGAGCGTTGC 60.883 63.158 0.00 0.00 0.00 4.17
2269 2521 0.174845 TTCGTCCCCTATGAGCGTTG 59.825 55.000 0.00 0.00 0.00 4.10
2270 2522 0.460311 CTTCGTCCCCTATGAGCGTT 59.540 55.000 0.00 0.00 0.00 4.84
2271 2523 1.392710 CCTTCGTCCCCTATGAGCGT 61.393 60.000 0.00 0.00 0.00 5.07
2272 2524 1.107538 TCCTTCGTCCCCTATGAGCG 61.108 60.000 0.00 0.00 0.00 5.03
2273 2525 1.120530 TTCCTTCGTCCCCTATGAGC 58.879 55.000 0.00 0.00 0.00 4.26
2274 2526 2.037772 CCATTCCTTCGTCCCCTATGAG 59.962 54.545 0.00 0.00 0.00 2.90
2275 2527 2.047061 CCATTCCTTCGTCCCCTATGA 58.953 52.381 0.00 0.00 0.00 2.15
2276 2528 1.768870 ACCATTCCTTCGTCCCCTATG 59.231 52.381 0.00 0.00 0.00 2.23
2277 2529 1.768870 CACCATTCCTTCGTCCCCTAT 59.231 52.381 0.00 0.00 0.00 2.57
2278 2530 1.200519 CACCATTCCTTCGTCCCCTA 58.799 55.000 0.00 0.00 0.00 3.53
2329 2583 6.127897 GGCTCTTGTGCTCACTTAAATGTAAT 60.128 38.462 1.47 0.00 0.00 1.89
2330 2584 5.181245 GGCTCTTGTGCTCACTTAAATGTAA 59.819 40.000 1.47 0.00 0.00 2.41
2331 2585 4.695455 GGCTCTTGTGCTCACTTAAATGTA 59.305 41.667 1.47 0.00 0.00 2.29
2333 2587 3.755378 AGGCTCTTGTGCTCACTTAAATG 59.245 43.478 1.47 0.00 0.00 2.32
2334 2588 3.755378 CAGGCTCTTGTGCTCACTTAAAT 59.245 43.478 1.47 0.00 0.00 1.40
2335 2589 3.141398 CAGGCTCTTGTGCTCACTTAAA 58.859 45.455 1.47 0.00 0.00 1.52
2337 2591 1.970640 TCAGGCTCTTGTGCTCACTTA 59.029 47.619 1.47 0.00 0.00 2.24
2338 2592 0.761187 TCAGGCTCTTGTGCTCACTT 59.239 50.000 1.47 0.00 0.00 3.16
2479 2734 9.269453 ACTCGAGCAAAGTTTATTTTAGTTAGT 57.731 29.630 13.61 0.00 0.00 2.24
2489 2744 7.440523 AAAAGATGACTCGAGCAAAGTTTAT 57.559 32.000 13.61 0.00 0.00 1.40
2498 2753 4.928661 TTGCTAAAAAGATGACTCGAGC 57.071 40.909 13.61 6.11 0.00 5.03
2509 2764 8.776802 GTCGATCGAGTAAAATTTGCTAAAAAG 58.223 33.333 20.09 0.00 0.00 2.27
2544 2801 8.704668 GGAATAAAATTCATGTAACCCAAGGAT 58.295 33.333 0.00 0.00 0.00 3.24
2565 2822 7.446931 TCAAAACTGTGCTAGAAATGTGGAATA 59.553 33.333 0.00 0.00 0.00 1.75
2600 2857 0.320247 CCTCTGCACTCTTCGCAACT 60.320 55.000 0.00 0.00 39.30 3.16
2606 2863 1.376553 GGCCACCTCTGCACTCTTC 60.377 63.158 0.00 0.00 0.00 2.87
2608 2865 1.922369 ATGGCCACCTCTGCACTCT 60.922 57.895 8.16 0.00 0.00 3.24
2682 2941 9.826574 ACTGTGTTTAGACAAAGACTTGTATAA 57.173 29.630 10.47 1.95 45.98 0.98
2683 2942 9.826574 AACTGTGTTTAGACAAAGACTTGTATA 57.173 29.630 10.47 0.00 45.98 1.47
2684 2943 8.732746 AACTGTGTTTAGACAAAGACTTGTAT 57.267 30.769 10.47 0.00 45.98 2.29
2685 2944 8.556213 AAACTGTGTTTAGACAAAGACTTGTA 57.444 30.769 10.47 0.00 45.98 2.41
2687 2946 8.020819 TGAAAACTGTGTTTAGACAAAGACTTG 58.979 33.333 10.47 0.00 42.73 3.16
2688 2947 8.106247 TGAAAACTGTGTTTAGACAAAGACTT 57.894 30.769 10.47 3.22 42.73 3.01
2689 2948 7.681939 TGAAAACTGTGTTTAGACAAAGACT 57.318 32.000 10.47 0.00 42.73 3.24
2690 2949 8.736751 TTTGAAAACTGTGTTTAGACAAAGAC 57.263 30.769 10.47 0.76 42.73 3.01
2691 2950 7.540745 GCTTTGAAAACTGTGTTTAGACAAAGA 59.459 33.333 27.93 12.44 42.73 2.52
2692 2951 7.328249 TGCTTTGAAAACTGTGTTTAGACAAAG 59.672 33.333 24.39 24.39 45.10 2.77
2693 2952 7.148641 TGCTTTGAAAACTGTGTTTAGACAAA 58.851 30.769 14.90 14.90 37.57 2.83
2694 2953 6.682746 TGCTTTGAAAACTGTGTTTAGACAA 58.317 32.000 0.00 2.48 37.57 3.18
2695 2954 6.260870 TGCTTTGAAAACTGTGTTTAGACA 57.739 33.333 0.00 0.00 0.00 3.41
2696 2955 7.575332 TTTGCTTTGAAAACTGTGTTTAGAC 57.425 32.000 0.00 0.00 0.00 2.59
2697 2956 7.117092 GGTTTTGCTTTGAAAACTGTGTTTAGA 59.883 33.333 9.24 0.00 42.84 2.10
2698 2957 7.233689 GGTTTTGCTTTGAAAACTGTGTTTAG 58.766 34.615 9.24 0.00 42.84 1.85
2699 2958 6.147985 GGGTTTTGCTTTGAAAACTGTGTTTA 59.852 34.615 9.24 0.00 42.84 2.01
2700 2959 5.049060 GGGTTTTGCTTTGAAAACTGTGTTT 60.049 36.000 9.24 0.00 42.84 2.83
2701 2960 4.454161 GGGTTTTGCTTTGAAAACTGTGTT 59.546 37.500 9.24 0.00 42.84 3.32
2702 2961 4.000325 GGGTTTTGCTTTGAAAACTGTGT 59.000 39.130 9.24 0.00 42.84 3.72
2703 2962 4.252878 AGGGTTTTGCTTTGAAAACTGTG 58.747 39.130 9.24 0.00 42.84 3.66
2704 2963 4.551702 AGGGTTTTGCTTTGAAAACTGT 57.448 36.364 9.24 0.00 42.84 3.55
2705 2964 7.170828 GGTATTAGGGTTTTGCTTTGAAAACTG 59.829 37.037 9.24 0.00 42.84 3.16
2706 2965 7.147637 TGGTATTAGGGTTTTGCTTTGAAAACT 60.148 33.333 9.24 0.00 42.84 2.66
2707 2966 6.987404 TGGTATTAGGGTTTTGCTTTGAAAAC 59.013 34.615 0.00 0.00 42.63 2.43
2708 2967 7.125792 TGGTATTAGGGTTTTGCTTTGAAAA 57.874 32.000 0.00 0.00 0.00 2.29
2709 2968 6.732896 TGGTATTAGGGTTTTGCTTTGAAA 57.267 33.333 0.00 0.00 0.00 2.69
2710 2969 6.926630 ATGGTATTAGGGTTTTGCTTTGAA 57.073 33.333 0.00 0.00 0.00 2.69
2711 2970 7.069331 CCATATGGTATTAGGGTTTTGCTTTGA 59.931 37.037 14.09 0.00 0.00 2.69
2712 2971 7.209475 CCATATGGTATTAGGGTTTTGCTTTG 58.791 38.462 14.09 0.00 0.00 2.77
2713 2972 7.360113 CCATATGGTATTAGGGTTTTGCTTT 57.640 36.000 14.09 0.00 0.00 3.51
2714 2973 6.976934 CCATATGGTATTAGGGTTTTGCTT 57.023 37.500 14.09 0.00 0.00 3.91
2730 2989 4.659111 ATTGATGCACACAACCATATGG 57.341 40.909 20.68 20.68 42.17 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.