Multiple sequence alignment - TraesCS4A01G499400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G499400 chr4A 100.000 3649 0 0 1 3649 744414997 744418645 0.000000e+00 6739
1 TraesCS4A01G499400 chr4A 87.602 1847 194 23 971 2796 744032396 744030564 0.000000e+00 2109
2 TraesCS4A01G499400 chr4A 87.507 1841 195 20 971 2796 744380350 744378530 0.000000e+00 2093
3 TraesCS4A01G499400 chr4A 87.340 1714 187 16 973 2662 743674778 743676485 0.000000e+00 1936
4 TraesCS4A01G499400 chr4A 86.580 1535 174 16 1224 2738 743345784 743347306 0.000000e+00 1664
5 TraesCS4A01G499400 chr4A 86.879 1349 169 5 1224 2566 744013736 744012390 0.000000e+00 1504
6 TraesCS4A01G499400 chr4A 81.432 377 37 16 482 834 709855660 709855293 9.980000e-71 278
7 TraesCS4A01G499400 chr4A 80.392 357 36 18 502 833 314694807 314695154 1.310000e-59 241
8 TraesCS4A01G499400 chr4A 78.421 380 72 5 76 452 744033257 744032885 4.710000e-59 239
9 TraesCS4A01G499400 chr4A 77.114 402 73 11 76 474 743671417 743671802 7.940000e-52 215
10 TraesCS4A01G499400 chr7A 87.744 1844 187 22 971 2793 330673 332498 0.000000e+00 2117
11 TraesCS4A01G499400 chr7A 87.118 1506 171 14 1224 2718 634002 635495 0.000000e+00 1685
12 TraesCS4A01G499400 chr7D 87.500 1376 149 12 1344 2704 1236143 1234776 0.000000e+00 1567
13 TraesCS4A01G499400 chr7D 86.375 822 99 12 2833 3648 412972551 412971737 0.000000e+00 885
14 TraesCS4A01G499400 chr3B 84.287 1591 207 29 1233 2810 29853826 29855386 0.000000e+00 1513
15 TraesCS4A01G499400 chr3B 84.758 433 53 9 6 432 809483481 809483056 4.360000e-114 422
16 TraesCS4A01G499400 chr3B 91.275 149 11 2 687 834 181881388 181881241 6.180000e-48 202
17 TraesCS4A01G499400 chr2D 87.835 822 94 3 2833 3648 252227477 252226656 0.000000e+00 959
18 TraesCS4A01G499400 chr2D 86.435 833 106 6 2821 3647 3629021 3628190 0.000000e+00 905
19 TraesCS4A01G499400 chr2D 86.513 823 103 7 2831 3647 3624757 3623937 0.000000e+00 898
20 TraesCS4A01G499400 chr2D 79.016 386 45 17 474 832 610364520 610364896 7.880000e-57 231
21 TraesCS4A01G499400 chr7B 86.578 827 103 8 2818 3640 603297643 603296821 0.000000e+00 905
22 TraesCS4A01G499400 chr7B 85.360 847 104 14 2808 3648 615363410 615364242 0.000000e+00 859
23 TraesCS4A01G499400 chr7B 82.111 341 41 12 482 814 581390674 581390346 1.290000e-69 274
24 TraesCS4A01G499400 chr3D 86.161 831 105 10 2825 3648 269179448 269180275 0.000000e+00 889
25 TraesCS4A01G499400 chr3D 85.560 831 111 9 2825 3648 269183706 269184534 0.000000e+00 861
26 TraesCS4A01G499400 chr5B 86.131 822 101 13 2833 3648 282701073 282700259 0.000000e+00 874
27 TraesCS4A01G499400 chr1A 79.639 388 44 18 474 834 291682923 291683302 2.810000e-61 246
28 TraesCS4A01G499400 chr6D 79.581 382 44 18 474 829 208851475 208851848 3.640000e-60 243
29 TraesCS4A01G499400 chr1D 79.487 390 42 21 474 834 174199597 174199217 3.640000e-60 243
30 TraesCS4A01G499400 chr1D 82.988 241 33 7 530 767 45134697 45134462 1.030000e-50 211
31 TraesCS4A01G499400 chr2A 79.683 379 41 21 482 834 743015415 743015047 1.310000e-59 241
32 TraesCS4A01G499400 chr2A 80.195 308 40 18 476 777 376754983 376754691 1.030000e-50 211
33 TraesCS4A01G499400 chr6B 80.968 310 51 5 104 411 1963240 1963543 4.710000e-59 239
34 TraesCS4A01G499400 chr6B 79.412 306 46 14 538 834 478423219 478422922 2.220000e-47 200
35 TraesCS4A01G499400 chr4D 80.056 356 36 20 505 834 506302929 506303275 7.880000e-57 231
36 TraesCS4A01G499400 chr4B 80.712 337 32 19 522 834 33313626 33313299 7.880000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G499400 chr4A 744414997 744418645 3648 False 6739.0 6739 100.0000 1 3649 1 chr4A.!!$F3 3648
1 TraesCS4A01G499400 chr4A 744378530 744380350 1820 True 2093.0 2093 87.5070 971 2796 1 chr4A.!!$R3 1825
2 TraesCS4A01G499400 chr4A 743345784 743347306 1522 False 1664.0 1664 86.5800 1224 2738 1 chr4A.!!$F2 1514
3 TraesCS4A01G499400 chr4A 744012390 744013736 1346 True 1504.0 1504 86.8790 1224 2566 1 chr4A.!!$R2 1342
4 TraesCS4A01G499400 chr4A 744030564 744033257 2693 True 1174.0 2109 83.0115 76 2796 2 chr4A.!!$R4 2720
5 TraesCS4A01G499400 chr4A 743671417 743676485 5068 False 1075.5 1936 82.2270 76 2662 2 chr4A.!!$F4 2586
6 TraesCS4A01G499400 chr7A 330673 332498 1825 False 2117.0 2117 87.7440 971 2793 1 chr7A.!!$F1 1822
7 TraesCS4A01G499400 chr7A 634002 635495 1493 False 1685.0 1685 87.1180 1224 2718 1 chr7A.!!$F2 1494
8 TraesCS4A01G499400 chr7D 1234776 1236143 1367 True 1567.0 1567 87.5000 1344 2704 1 chr7D.!!$R1 1360
9 TraesCS4A01G499400 chr7D 412971737 412972551 814 True 885.0 885 86.3750 2833 3648 1 chr7D.!!$R2 815
10 TraesCS4A01G499400 chr3B 29853826 29855386 1560 False 1513.0 1513 84.2870 1233 2810 1 chr3B.!!$F1 1577
11 TraesCS4A01G499400 chr2D 252226656 252227477 821 True 959.0 959 87.8350 2833 3648 1 chr2D.!!$R1 815
12 TraesCS4A01G499400 chr2D 3623937 3629021 5084 True 901.5 905 86.4740 2821 3647 2 chr2D.!!$R2 826
13 TraesCS4A01G499400 chr7B 603296821 603297643 822 True 905.0 905 86.5780 2818 3640 1 chr7B.!!$R2 822
14 TraesCS4A01G499400 chr7B 615363410 615364242 832 False 859.0 859 85.3600 2808 3648 1 chr7B.!!$F1 840
15 TraesCS4A01G499400 chr3D 269179448 269184534 5086 False 875.0 889 85.8605 2825 3648 2 chr3D.!!$F1 823
16 TraesCS4A01G499400 chr5B 282700259 282701073 814 True 874.0 874 86.1310 2833 3648 1 chr5B.!!$R1 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
393 397 0.029035 ACTTCTACTATGGCGACGCG 59.971 55.0 14.61 3.53 0.00 6.01 F
475 479 0.109723 GGCCACTACCACAGGTCAAA 59.890 55.0 0.00 0.00 37.09 2.69 F
1033 3628 0.116342 TCCAGGTAGCAAGAGGACCA 59.884 55.0 0.00 0.00 35.56 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2314 4960 0.168128 GTACGCACCACAAGCCAATC 59.832 55.000 0.0 0.0 0.00 2.67 R
2406 5052 0.587768 GTTTTGCTTTGGTGGCATGC 59.412 50.000 9.9 9.9 39.54 4.06 R
2699 5360 2.172505 TGCAGGTCACCTTCTCAAAAGA 59.827 45.455 0.0 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.540145 GTTCACCTAGCCAACCACG 58.460 57.895 0.00 0.00 0.00 4.94
19 20 0.034337 GTTCACCTAGCCAACCACGA 59.966 55.000 0.00 0.00 0.00 4.35
20 21 0.034337 TTCACCTAGCCAACCACGAC 59.966 55.000 0.00 0.00 0.00 4.34
21 22 0.830444 TCACCTAGCCAACCACGACT 60.830 55.000 0.00 0.00 0.00 4.18
22 23 0.034896 CACCTAGCCAACCACGACTT 59.965 55.000 0.00 0.00 0.00 3.01
23 24 0.320697 ACCTAGCCAACCACGACTTC 59.679 55.000 0.00 0.00 0.00 3.01
24 25 0.391263 CCTAGCCAACCACGACTTCC 60.391 60.000 0.00 0.00 0.00 3.46
25 26 0.608640 CTAGCCAACCACGACTTCCT 59.391 55.000 0.00 0.00 0.00 3.36
26 27 0.606604 TAGCCAACCACGACTTCCTC 59.393 55.000 0.00 0.00 0.00 3.71
28 29 1.663739 CCAACCACGACTTCCTCGA 59.336 57.895 0.00 0.00 46.14 4.04
29 30 0.666577 CCAACCACGACTTCCTCGAC 60.667 60.000 0.00 0.00 46.14 4.20
30 31 0.666577 CAACCACGACTTCCTCGACC 60.667 60.000 0.00 0.00 46.14 4.79
31 32 1.813728 AACCACGACTTCCTCGACCC 61.814 60.000 0.00 0.00 46.14 4.46
32 33 2.572284 CACGACTTCCTCGACCCC 59.428 66.667 0.00 0.00 46.14 4.95
33 34 2.116772 ACGACTTCCTCGACCCCA 59.883 61.111 0.00 0.00 46.14 4.96
34 35 1.977544 ACGACTTCCTCGACCCCAG 60.978 63.158 0.00 0.00 46.14 4.45
35 36 2.579738 GACTTCCTCGACCCCAGC 59.420 66.667 0.00 0.00 0.00 4.85
36 37 2.203788 ACTTCCTCGACCCCAGCA 60.204 61.111 0.00 0.00 0.00 4.41
37 38 2.232298 GACTTCCTCGACCCCAGCAG 62.232 65.000 0.00 0.00 0.00 4.24
38 39 3.672295 CTTCCTCGACCCCAGCAGC 62.672 68.421 0.00 0.00 0.00 5.25
40 41 4.463879 CCTCGACCCCAGCAGCAG 62.464 72.222 0.00 0.00 0.00 4.24
51 52 3.495543 GCAGCAGCTACTTGGAGC 58.504 61.111 0.00 0.00 43.19 4.70
64 65 7.240414 GCTACTTGGAGCTAAATGTCTTTAG 57.760 40.000 0.00 1.62 44.45 1.85
65 66 6.819146 GCTACTTGGAGCTAAATGTCTTTAGT 59.181 38.462 0.00 0.00 43.81 2.24
66 67 7.201565 GCTACTTGGAGCTAAATGTCTTTAGTG 60.202 40.741 0.00 0.00 43.81 2.74
67 68 5.940470 ACTTGGAGCTAAATGTCTTTAGTGG 59.060 40.000 6.89 0.00 43.81 4.00
68 69 5.499004 TGGAGCTAAATGTCTTTAGTGGT 57.501 39.130 6.89 0.00 43.81 4.16
69 70 5.488341 TGGAGCTAAATGTCTTTAGTGGTC 58.512 41.667 6.89 0.00 43.81 4.02
70 71 5.012664 TGGAGCTAAATGTCTTTAGTGGTCA 59.987 40.000 6.89 0.47 43.81 4.02
71 72 5.351740 GGAGCTAAATGTCTTTAGTGGTCAC 59.648 44.000 6.89 0.00 43.81 3.67
72 73 5.865085 AGCTAAATGTCTTTAGTGGTCACA 58.135 37.500 3.82 0.00 43.81 3.58
73 74 6.296026 AGCTAAATGTCTTTAGTGGTCACAA 58.704 36.000 3.82 0.00 43.81 3.33
74 75 6.770785 AGCTAAATGTCTTTAGTGGTCACAAA 59.229 34.615 3.82 2.26 43.81 2.83
159 160 1.082117 GTATGCGGTGGACAACTCCG 61.082 60.000 3.72 3.72 45.94 4.63
280 281 2.361230 GCCAGGGGTGCCTACAAC 60.361 66.667 0.00 0.00 0.00 3.32
284 285 4.338710 GGGGTGCCTACAACGCCA 62.339 66.667 4.92 0.00 40.45 5.69
285 286 2.281900 GGGTGCCTACAACGCCAA 60.282 61.111 0.00 0.00 39.55 4.52
313 314 1.068417 TGGTCGACCAAGTTCCACG 59.932 57.895 34.60 0.00 44.35 4.94
316 317 1.008194 TCGACCAAGTTCCACGACG 60.008 57.895 0.00 0.00 0.00 5.12
320 321 2.424302 CAAGTTCCACGACGGGGT 59.576 61.111 17.38 0.00 34.36 4.95
321 322 1.667151 CAAGTTCCACGACGGGGTA 59.333 57.895 17.38 2.92 34.36 3.69
322 323 0.389426 CAAGTTCCACGACGGGGTAG 60.389 60.000 17.38 0.00 34.36 3.18
323 324 0.540365 AAGTTCCACGACGGGGTAGA 60.540 55.000 17.38 0.37 34.36 2.59
326 327 3.145551 CCACGACGGGGTAGAGGG 61.146 72.222 8.35 0.00 0.00 4.30
336 340 2.210711 GGTAGAGGGCGGGAGGATG 61.211 68.421 0.00 0.00 0.00 3.51
374 378 2.552155 CCTTGAGGTCCGAATTGAACCA 60.552 50.000 3.95 0.00 35.43 3.67
382 386 4.562963 GGTCCGAATTGAACCACTTCTACT 60.563 45.833 0.00 0.00 33.11 2.57
388 392 3.520290 TGAACCACTTCTACTATGGCG 57.480 47.619 0.00 0.00 36.96 5.69
389 393 3.093814 TGAACCACTTCTACTATGGCGA 58.906 45.455 0.00 0.00 36.96 5.54
393 397 0.029035 ACTTCTACTATGGCGACGCG 59.971 55.000 14.61 3.53 0.00 6.01
397 401 1.337817 CTACTATGGCGACGCGATGC 61.338 60.000 25.08 16.48 0.00 3.91
408 412 3.512516 GCGATGCTCCTGTTGCCC 61.513 66.667 0.00 0.00 0.00 5.36
467 471 4.323477 TGTGCCGGCCACTACCAC 62.323 66.667 26.77 14.29 44.92 4.16
474 478 1.758592 GGCCACTACCACAGGTCAA 59.241 57.895 0.00 0.00 37.09 3.18
475 479 0.109723 GGCCACTACCACAGGTCAAA 59.890 55.000 0.00 0.00 37.09 2.69
477 481 2.084546 GCCACTACCACAGGTCAAATC 58.915 52.381 0.00 0.00 37.09 2.17
478 482 2.711542 CCACTACCACAGGTCAAATCC 58.288 52.381 0.00 0.00 37.09 3.01
481 485 4.504858 CACTACCACAGGTCAAATCCTAC 58.495 47.826 0.00 0.00 37.09 3.18
485 489 4.426704 ACCACAGGTCAAATCCTACTACT 58.573 43.478 0.00 0.00 35.87 2.57
488 492 5.163437 CCACAGGTCAAATCCTACTACTACC 60.163 48.000 0.00 0.00 35.87 3.18
489 493 4.643784 ACAGGTCAAATCCTACTACTACCG 59.356 45.833 0.00 0.00 35.87 4.02
490 494 4.037684 CAGGTCAAATCCTACTACTACCGG 59.962 50.000 0.00 0.00 35.87 5.28
491 495 3.320256 GGTCAAATCCTACTACTACCGGG 59.680 52.174 6.32 0.00 0.00 5.73
492 496 3.956848 GTCAAATCCTACTACTACCGGGT 59.043 47.826 6.32 4.46 0.00 5.28
493 497 3.956199 TCAAATCCTACTACTACCGGGTG 59.044 47.826 10.66 0.00 0.00 4.61
494 498 3.677156 AATCCTACTACTACCGGGTGT 57.323 47.619 10.66 6.62 0.00 4.16
495 499 4.796110 AATCCTACTACTACCGGGTGTA 57.204 45.455 10.66 7.54 0.00 2.90
498 502 3.523564 TCCTACTACTACCGGGTGTAACT 59.476 47.826 10.66 0.00 36.74 2.24
525 529 9.784376 ACACCCATATCTTATATACTACCATGT 57.216 33.333 0.00 0.00 0.00 3.21
527 531 9.213777 ACCCATATCTTATATACTACCATGTGG 57.786 37.037 0.00 0.00 42.17 4.17
605 609 7.062749 ACAAGATACTCCAAAGTGAGTTACA 57.937 36.000 0.00 0.00 42.92 2.41
606 610 7.680730 ACAAGATACTCCAAAGTGAGTTACAT 58.319 34.615 0.00 0.00 42.92 2.29
607 611 7.604164 ACAAGATACTCCAAAGTGAGTTACATG 59.396 37.037 0.00 0.00 42.92 3.21
608 612 7.482169 AGATACTCCAAAGTGAGTTACATGA 57.518 36.000 0.00 0.00 42.92 3.07
609 613 7.907389 AGATACTCCAAAGTGAGTTACATGAA 58.093 34.615 0.00 0.00 42.92 2.57
610 614 8.375506 AGATACTCCAAAGTGAGTTACATGAAA 58.624 33.333 0.00 0.00 42.92 2.69
611 615 8.918202 ATACTCCAAAGTGAGTTACATGAAAA 57.082 30.769 0.00 0.00 42.92 2.29
612 616 7.823745 ACTCCAAAGTGAGTTACATGAAAAT 57.176 32.000 0.00 0.00 42.92 1.82
613 617 8.237811 ACTCCAAAGTGAGTTACATGAAAATT 57.762 30.769 0.00 0.00 42.92 1.82
614 618 8.695456 ACTCCAAAGTGAGTTACATGAAAATTT 58.305 29.630 0.00 0.00 42.92 1.82
615 619 9.533253 CTCCAAAGTGAGTTACATGAAAATTTT 57.467 29.630 2.28 2.28 0.00 1.82
616 620 9.311916 TCCAAAGTGAGTTACATGAAAATTTTG 57.688 29.630 8.47 0.00 0.00 2.44
617 621 8.063630 CCAAAGTGAGTTACATGAAAATTTTGC 58.936 33.333 8.47 1.07 0.00 3.68
618 622 8.602328 CAAAGTGAGTTACATGAAAATTTTGCA 58.398 29.630 8.47 6.82 0.00 4.08
619 623 8.715191 AAGTGAGTTACATGAAAATTTTGCAA 57.285 26.923 8.47 0.00 0.00 4.08
620 624 8.356533 AGTGAGTTACATGAAAATTTTGCAAG 57.643 30.769 8.47 6.18 0.00 4.01
621 625 7.981225 AGTGAGTTACATGAAAATTTTGCAAGT 59.019 29.630 8.47 11.15 0.00 3.16
622 626 8.603181 GTGAGTTACATGAAAATTTTGCAAGTT 58.397 29.630 8.47 0.00 0.00 2.66
623 627 8.602328 TGAGTTACATGAAAATTTTGCAAGTTG 58.398 29.630 8.47 0.00 0.00 3.16
624 628 8.715191 AGTTACATGAAAATTTTGCAAGTTGA 57.285 26.923 8.47 0.98 0.00 3.18
625 629 8.603181 AGTTACATGAAAATTTTGCAAGTTGAC 58.397 29.630 8.47 10.60 0.00 3.18
626 630 6.362210 ACATGAAAATTTTGCAAGTTGACC 57.638 33.333 8.47 0.00 0.00 4.02
627 631 5.879223 ACATGAAAATTTTGCAAGTTGACCA 59.121 32.000 8.47 0.00 0.00 4.02
628 632 6.373774 ACATGAAAATTTTGCAAGTTGACCAA 59.626 30.769 8.47 0.00 0.00 3.67
629 633 6.175712 TGAAAATTTTGCAAGTTGACCAAC 57.824 33.333 8.47 4.81 41.45 3.77
630 634 5.702670 TGAAAATTTTGCAAGTTGACCAACA 59.297 32.000 8.47 0.00 43.47 3.33
631 635 5.799681 AAATTTTGCAAGTTGACCAACAG 57.200 34.783 7.16 7.99 43.47 3.16
632 636 3.951775 TTTTGCAAGTTGACCAACAGT 57.048 38.095 7.16 0.29 43.47 3.55
633 637 3.951775 TTTGCAAGTTGACCAACAGTT 57.048 38.095 7.16 0.00 43.47 3.16
634 638 3.951775 TTGCAAGTTGACCAACAGTTT 57.048 38.095 7.16 0.00 43.47 2.66
635 639 3.951775 TGCAAGTTGACCAACAGTTTT 57.048 38.095 7.16 0.00 43.47 2.43
636 640 4.264460 TGCAAGTTGACCAACAGTTTTT 57.736 36.364 7.16 0.00 43.47 1.94
680 684 9.444600 ACATATGTATTTCACGTAAAAAGGAGT 57.555 29.630 6.56 0.00 32.37 3.85
685 689 7.604927 TGTATTTCACGTAAAAAGGAGTATGCT 59.395 33.333 0.00 0.00 40.15 3.79
691 695 8.500773 TCACGTAAAAAGGAGTATGCTAAAAAG 58.499 33.333 0.00 0.00 33.13 2.27
692 696 8.287503 CACGTAAAAAGGAGTATGCTAAAAAGT 58.712 33.333 0.00 0.00 33.13 2.66
694 698 9.968743 CGTAAAAAGGAGTATGCTAAAAAGTAG 57.031 33.333 0.00 0.00 33.13 2.57
745 922 7.889589 ATACTACATACTACGCGTACATACA 57.110 36.000 16.41 0.00 0.00 2.29
747 924 5.755375 ACTACATACTACGCGTACATACACT 59.245 40.000 16.41 0.00 0.00 3.55
748 925 5.088141 ACATACTACGCGTACATACACTC 57.912 43.478 16.41 0.00 0.00 3.51
749 926 4.024556 ACATACTACGCGTACATACACTCC 60.025 45.833 16.41 0.00 0.00 3.85
752 929 2.953466 ACGCGTACATACACTCCAAT 57.047 45.000 11.67 0.00 0.00 3.16
754 931 4.579454 ACGCGTACATACACTCCAATAT 57.421 40.909 11.67 0.00 0.00 1.28
755 932 4.295870 ACGCGTACATACACTCCAATATG 58.704 43.478 11.67 0.00 35.33 1.78
757 934 5.161358 CGCGTACATACACTCCAATATGAT 58.839 41.667 0.00 0.00 33.73 2.45
759 936 6.469275 CGCGTACATACACTCCAATATGATAG 59.531 42.308 0.00 0.00 33.73 2.08
761 938 8.191446 GCGTACATACACTCCAATATGATAGAT 58.809 37.037 0.00 0.00 33.73 1.98
779 956 9.955102 ATGATAGATACTACCTACAACATACGA 57.045 33.333 0.00 0.00 0.00 3.43
783 960 8.284945 AGATACTACCTACAACATACGAAACA 57.715 34.615 0.00 0.00 0.00 2.83
785 962 9.357652 GATACTACCTACAACATACGAAACAAA 57.642 33.333 0.00 0.00 0.00 2.83
786 963 9.709495 ATACTACCTACAACATACGAAACAAAA 57.291 29.630 0.00 0.00 0.00 2.44
787 964 8.436046 ACTACCTACAACATACGAAACAAAAA 57.564 30.769 0.00 0.00 0.00 1.94
788 965 9.059260 ACTACCTACAACATACGAAACAAAAAT 57.941 29.630 0.00 0.00 0.00 1.82
789 966 9.325150 CTACCTACAACATACGAAACAAAAATG 57.675 33.333 0.00 0.00 0.00 2.32
790 967 7.142680 ACCTACAACATACGAAACAAAAATGG 58.857 34.615 0.00 0.00 0.00 3.16
791 968 6.584563 CCTACAACATACGAAACAAAAATGGG 59.415 38.462 0.00 0.00 0.00 4.00
792 969 6.150396 ACAACATACGAAACAAAAATGGGA 57.850 33.333 0.00 0.00 0.00 4.37
793 970 6.212955 ACAACATACGAAACAAAAATGGGAG 58.787 36.000 0.00 0.00 0.00 4.30
794 971 6.183360 ACAACATACGAAACAAAAATGGGAGT 60.183 34.615 0.00 0.00 0.00 3.85
796 973 7.513371 ACATACGAAACAAAAATGGGAGTAA 57.487 32.000 0.00 0.00 0.00 2.24
797 974 8.117813 ACATACGAAACAAAAATGGGAGTAAT 57.882 30.769 0.00 0.00 0.00 1.89
798 975 8.581578 ACATACGAAACAAAAATGGGAGTAATT 58.418 29.630 0.00 0.00 0.00 1.40
801 978 7.942990 ACGAAACAAAAATGGGAGTAATTACA 58.057 30.769 17.65 0.00 0.00 2.41
802 979 7.863877 ACGAAACAAAAATGGGAGTAATTACAC 59.136 33.333 17.65 11.15 0.00 2.90
803 980 7.327518 CGAAACAAAAATGGGAGTAATTACACC 59.672 37.037 20.34 20.34 36.39 4.16
804 981 7.849322 AACAAAAATGGGAGTAATTACACCT 57.151 32.000 25.31 9.38 37.16 4.00
805 982 7.227049 ACAAAAATGGGAGTAATTACACCTG 57.773 36.000 25.31 18.40 37.16 4.00
806 983 6.210584 ACAAAAATGGGAGTAATTACACCTGG 59.789 38.462 25.31 10.36 37.16 4.45
807 984 5.530176 AAATGGGAGTAATTACACCTGGT 57.470 39.130 25.31 12.82 37.16 4.00
808 985 4.772886 ATGGGAGTAATTACACCTGGTC 57.227 45.455 25.31 13.23 37.16 4.02
809 986 2.498481 TGGGAGTAATTACACCTGGTCG 59.502 50.000 25.31 0.00 37.16 4.79
810 987 2.498885 GGGAGTAATTACACCTGGTCGT 59.501 50.000 25.31 1.59 37.16 4.34
812 989 4.202090 GGGAGTAATTACACCTGGTCGTAG 60.202 50.000 25.31 0.00 37.16 3.51
813 990 4.202090 GGAGTAATTACACCTGGTCGTAGG 60.202 50.000 20.98 0.00 43.71 3.18
814 991 4.603131 AGTAATTACACCTGGTCGTAGGA 58.397 43.478 17.65 0.00 40.42 2.94
815 992 5.018809 AGTAATTACACCTGGTCGTAGGAA 58.981 41.667 17.65 0.00 40.42 3.36
816 993 4.895668 AATTACACCTGGTCGTAGGAAA 57.104 40.909 0.00 0.00 40.42 3.13
817 994 3.665745 TTACACCTGGTCGTAGGAAAC 57.334 47.619 0.00 0.00 40.42 2.78
818 995 1.416243 ACACCTGGTCGTAGGAAACA 58.584 50.000 0.00 0.00 40.42 2.83
819 996 1.975680 ACACCTGGTCGTAGGAAACAT 59.024 47.619 0.00 0.00 40.42 2.71
820 997 2.370849 ACACCTGGTCGTAGGAAACATT 59.629 45.455 0.00 0.00 40.42 2.71
821 998 3.181448 ACACCTGGTCGTAGGAAACATTT 60.181 43.478 0.00 0.00 40.42 2.32
822 999 3.188460 CACCTGGTCGTAGGAAACATTTG 59.812 47.826 0.00 0.00 40.42 2.32
823 1000 3.181448 ACCTGGTCGTAGGAAACATTTGT 60.181 43.478 9.50 0.00 40.42 2.83
824 1001 3.435671 CCTGGTCGTAGGAAACATTTGTC 59.564 47.826 0.00 0.00 40.42 3.18
831 3357 8.362639 GGTCGTAGGAAACATTTGTCCTATATA 58.637 37.037 1.00 0.00 45.89 0.86
832 3358 9.924650 GTCGTAGGAAACATTTGTCCTATATAT 57.075 33.333 1.00 0.00 45.89 0.86
866 3392 7.432350 AAAAGAGAATTGAGAGATGTGACAC 57.568 36.000 0.00 0.00 0.00 3.67
867 3393 5.083533 AGAGAATTGAGAGATGTGACACC 57.916 43.478 2.45 0.00 0.00 4.16
868 3394 4.081198 AGAGAATTGAGAGATGTGACACCC 60.081 45.833 2.45 0.00 0.00 4.61
871 3397 2.209690 TGAGAGATGTGACACCCGTA 57.790 50.000 2.45 0.00 0.00 4.02
911 3447 9.376075 CCTGAAAGTCATATATGTATCCATGTC 57.624 37.037 12.42 2.50 32.29 3.06
925 3461 4.537135 TCCATGTCCTACTGTTCTTCAC 57.463 45.455 0.00 0.00 0.00 3.18
935 3471 5.809562 CCTACTGTTCTTCACTATCTTGCAG 59.190 44.000 0.00 0.00 0.00 4.41
952 3488 7.994425 TCTTGCAGTGTATTTATTTCTTCCA 57.006 32.000 0.00 0.00 0.00 3.53
989 3584 5.440685 CAAAACTATTGGACGACACAGTTC 58.559 41.667 0.00 0.00 0.00 3.01
1009 3604 8.046708 ACAGTTCTTACTCATAAATGCCATGTA 58.953 33.333 0.00 0.00 30.26 2.29
1033 3628 0.116342 TCCAGGTAGCAAGAGGACCA 59.884 55.000 0.00 0.00 35.56 4.02
1037 3632 1.834263 AGGTAGCAAGAGGACCATCAC 59.166 52.381 0.00 0.00 35.56 3.06
1058 3653 9.295214 CATCACGAAGATTATGCTAATAGGTAG 57.705 37.037 0.00 0.00 33.72 3.18
1063 3658 7.916450 CGAAGATTATGCTAATAGGTAGGCTAC 59.084 40.741 16.40 16.40 0.00 3.58
1083 3679 5.175673 GCTACAACTTTTGCCATCTTTTCAC 59.824 40.000 0.00 0.00 0.00 3.18
1108 3708 6.897259 TGTGACGATTTAAATACCAGTAGC 57.103 37.500 0.00 0.00 0.00 3.58
1160 3763 7.183580 GTGCAACTTTAAAATTTACCATGCA 57.816 32.000 10.38 10.38 37.70 3.96
1178 3781 8.428186 ACCATGCATGTAATCATTGAAAATTC 57.572 30.769 24.58 0.00 31.15 2.17
1207 3810 9.748708 TCTGACATTAAAATTTCAAACAAGGAG 57.251 29.630 0.00 0.00 0.00 3.69
1213 3816 4.756084 AATTTCAAACAAGGAGCTCTCG 57.244 40.909 14.64 4.87 0.00 4.04
1220 3823 1.374758 AAGGAGCTCTCGGTTTGCG 60.375 57.895 14.64 0.00 0.00 4.85
1221 3824 2.048127 GGAGCTCTCGGTTTGCGT 60.048 61.111 14.64 0.00 0.00 5.24
1222 3825 1.214589 GGAGCTCTCGGTTTGCGTA 59.785 57.895 14.64 0.00 0.00 4.42
1230 3833 4.085210 GCTCTCGGTTTGCGTATAATACAC 60.085 45.833 0.00 0.00 0.00 2.90
1323 3950 6.867662 ACCGATGATCTTGGAAATCATAAC 57.132 37.500 5.61 0.00 42.48 1.89
1390 4026 7.095060 GCTTTCATCTCAGTTTTGACATCAGTA 60.095 37.037 0.00 0.00 0.00 2.74
1391 4027 7.895975 TTCATCTCAGTTTTGACATCAGTAG 57.104 36.000 0.00 0.00 0.00 2.57
1392 4028 6.401394 TCATCTCAGTTTTGACATCAGTAGG 58.599 40.000 0.00 0.00 0.00 3.18
1417 4053 2.699954 ACCTTGCTCTTTCCGTGTATG 58.300 47.619 0.00 0.00 0.00 2.39
1461 4097 3.803340 AGGGGAGAAGACTATGGTTTCA 58.197 45.455 6.81 0.00 0.00 2.69
1476 4112 3.381272 TGGTTTCACCTTTGCAAGAAGAG 59.619 43.478 0.00 0.00 39.58 2.85
1482 4118 3.565482 CACCTTTGCAAGAAGAGTAGCAA 59.435 43.478 0.00 0.00 44.36 3.91
1525 4164 4.442612 GCCATGATAGCATCGTATGGATCT 60.443 45.833 14.33 0.00 40.52 2.75
1540 4179 2.168521 TGGATCTCTAGCTCCAAAACGG 59.831 50.000 0.06 0.00 37.39 4.44
1559 4198 4.197750 ACGGTACATGTACTCAGAGGTAG 58.802 47.826 29.89 14.83 36.36 3.18
1603 4246 1.260544 ATGAGCTTGGAAAAGGTGGC 58.739 50.000 0.00 0.00 0.00 5.01
1605 4248 0.600057 GAGCTTGGAAAAGGTGGCTG 59.400 55.000 0.00 0.00 0.00 4.85
1630 4273 4.440112 GGTGTGGTTTTCAAAGGAAGACTG 60.440 45.833 0.00 0.00 38.02 3.51
1631 4274 4.398044 GTGTGGTTTTCAAAGGAAGACTGA 59.602 41.667 0.00 0.00 38.02 3.41
1811 4454 1.002773 AGTACATGTCCAACGGTTCCC 59.997 52.381 0.00 0.00 0.00 3.97
1836 4479 7.390440 CCTGGATAAGTACATCTACTCAGAGAG 59.610 44.444 3.79 0.00 31.42 3.20
1942 4585 4.632251 TGTAATACACGCATCGTCCATTTT 59.368 37.500 0.00 0.00 38.32 1.82
2083 4729 1.942657 ACAATTGGATTCATCGCTCCG 59.057 47.619 10.83 0.00 34.05 4.63
2133 4779 5.124776 TGGTTTCGACAAAGTCAGATGTTTT 59.875 36.000 0.00 0.00 32.09 2.43
2137 4783 5.985781 TCGACAAAGTCAGATGTTTTTAGC 58.014 37.500 0.00 0.00 32.09 3.09
2212 4858 5.710613 TTGTTGAAAATTCCAGCGAAAAC 57.289 34.783 0.00 0.00 0.00 2.43
2261 4907 6.441274 CACTTTGCTCAAGATGAAGCTTTAA 58.559 36.000 0.00 0.00 36.21 1.52
2314 4960 5.526846 GGAGATAGCAAGAAAGATGACCTTG 59.473 44.000 0.00 0.00 40.00 3.61
2359 5005 2.440517 TACCTGTGTATCGCCCTACA 57.559 50.000 0.00 0.00 0.00 2.74
2366 5012 4.689071 TGTGTATCGCCCTACAATAACAG 58.311 43.478 0.00 0.00 33.59 3.16
2371 5017 2.429610 TCGCCCTACAATAACAGGAGTC 59.570 50.000 0.00 0.00 33.42 3.36
2406 5052 4.161189 TGAGAGAAGCTTAGATGAACTGGG 59.839 45.833 0.00 0.00 0.00 4.45
2445 5091 7.201617 GCAAAACTTCTGTGAACTAGTGTAAGT 60.202 37.037 0.00 0.00 0.00 2.24
2468 5114 8.398878 AGTTATTTCTCCCGTATTTTTGTTCA 57.601 30.769 0.00 0.00 0.00 3.18
2499 5147 9.525826 TTTTTGTGGGAAATTATTATTTGGCAT 57.474 25.926 0.00 0.00 34.16 4.40
2527 5176 8.532186 ACTTGATCTACACACTTATCTCTCAT 57.468 34.615 0.00 0.00 0.00 2.90
2536 5185 4.940046 ACACTTATCTCTCATTTGCAGTGG 59.060 41.667 0.00 0.00 35.69 4.00
2545 5194 3.554934 TCATTTGCAGTGGAAGTTCAGT 58.445 40.909 5.01 0.00 0.00 3.41
2554 5203 5.560953 GCAGTGGAAGTTCAGTTCACAATAC 60.561 44.000 5.01 0.00 0.00 1.89
2566 5215 6.146510 TCAGTTCACAATACGGATGTACAAAC 59.853 38.462 0.00 0.00 32.26 2.93
2567 5216 5.119588 AGTTCACAATACGGATGTACAAACG 59.880 40.000 17.59 17.59 32.26 3.60
2568 5217 4.807443 TCACAATACGGATGTACAAACGA 58.193 39.130 23.68 11.40 32.26 3.85
2569 5218 5.228665 TCACAATACGGATGTACAAACGAA 58.771 37.500 23.68 1.94 32.26 3.85
2582 5231 5.524281 TGTACAAACGAATGCAAGTTCTACA 59.476 36.000 0.00 5.23 0.00 2.74
2586 5235 4.732285 ACGAATGCAAGTTCTACAAGTG 57.268 40.909 0.00 0.00 0.00 3.16
2607 5256 5.049167 GTGCCAGATCTGAGAAGATAAGTG 58.951 45.833 24.62 3.66 0.00 3.16
2619 5269 6.592994 TGAGAAGATAAGTGCTGTGAATTCAG 59.407 38.462 8.80 0.00 38.35 3.02
2628 5278 7.840342 AGTGCTGTGAATTCAGAAATACTAG 57.160 36.000 8.80 0.00 37.61 2.57
2637 5287 5.633830 TTCAGAAATACTAGAACGGTCGT 57.366 39.130 0.00 0.00 0.00 4.34
2669 5319 4.177026 GAGCAGATATATAAGCCACGTGG 58.823 47.826 30.66 30.66 38.53 4.94
2701 5362 8.655935 AAAATCCTACAATGATTTCCAACTCT 57.344 30.769 0.00 0.00 40.57 3.24
2721 5383 2.727123 TTTGAGAAGGTGACCTGCAA 57.273 45.000 13.18 11.15 29.53 4.08
2741 5403 7.067372 CCTGCAATGGAGTACATTCAGAAATTA 59.933 37.037 20.43 0.00 46.67 1.40
2771 5433 4.325741 CGCAATGAAAATTCGGCATTGTAA 59.674 37.500 19.94 0.00 46.43 2.41
2797 5463 9.618890 AATATTCCATATGTATGCATGACCTAC 57.381 33.333 10.16 0.00 36.58 3.18
2799 5465 5.793817 TCCATATGTATGCATGACCTACAC 58.206 41.667 10.16 0.00 36.58 2.90
2810 5476 3.599730 TGACCTACACTCAAGAGCATG 57.400 47.619 0.00 0.00 0.00 4.06
2811 5477 3.165071 TGACCTACACTCAAGAGCATGA 58.835 45.455 0.00 0.00 0.00 3.07
2812 5478 3.578282 TGACCTACACTCAAGAGCATGAA 59.422 43.478 0.00 0.00 0.00 2.57
2813 5479 3.929610 GACCTACACTCAAGAGCATGAAC 59.070 47.826 0.00 0.00 0.00 3.18
2814 5480 3.324846 ACCTACACTCAAGAGCATGAACA 59.675 43.478 0.00 0.00 0.00 3.18
2815 5481 4.019860 ACCTACACTCAAGAGCATGAACAT 60.020 41.667 0.00 0.00 0.00 2.71
2816 5482 4.569966 CCTACACTCAAGAGCATGAACATC 59.430 45.833 0.00 0.00 0.00 3.06
2823 5489 3.340814 AGAGCATGAACATCTTCCGTT 57.659 42.857 0.00 0.00 0.00 4.44
2829 5495 4.320494 GCATGAACATCTTCCGTTTTGTCT 60.320 41.667 0.00 0.00 0.00 3.41
2884 5550 1.175347 CGATCTCATCTCGAGGGCCA 61.175 60.000 13.56 0.00 42.55 5.36
2972 5638 5.594926 ACTGCCTCAAATGAGAAAACTTTG 58.405 37.500 11.94 0.00 44.74 2.77
2977 5643 6.978080 GCCTCAAATGAGAAAACTTTGTACAA 59.022 34.615 11.94 3.59 44.74 2.41
3038 5704 2.691409 AAATCGCCTCAATCCGAGAA 57.309 45.000 0.00 0.00 45.45 2.87
3079 5746 1.217511 CTGAGTGCGGCTCTGTCAT 59.782 57.895 9.58 0.00 44.41 3.06
3183 5853 2.209838 TGAAGATGCCTCGAATCGAC 57.790 50.000 0.00 0.00 0.00 4.20
3209 5879 5.109662 TGTTCAACACAAAAGTTGTTCGA 57.890 34.783 6.70 0.00 46.78 3.71
3255 10183 1.427809 TGGGCTCATCTTCATCCGAT 58.572 50.000 0.00 0.00 0.00 4.18
3274 10202 1.525077 GTCGTTTGTGGCCTGTGGA 60.525 57.895 3.32 0.00 0.00 4.02
3297 14479 7.342284 TGGAACCTAAAAACCAAACTGATGTTA 59.658 33.333 0.00 0.00 34.96 2.41
3332 14514 6.779115 AAATCCGAGTTTGGTTAATTTTGC 57.221 33.333 0.00 0.00 0.00 3.68
3350 14532 7.605410 ATTTTGCAAAGATTTGGATGTGATC 57.395 32.000 12.41 0.00 38.31 2.92
3377 14559 6.183360 GGAGTCCTTTTCTTATACGGGAAGAT 60.183 42.308 0.41 0.00 33.06 2.40
3400 14583 8.007742 AGATCATCCGCCTCTTATATACCTAAT 58.992 37.037 0.00 0.00 0.00 1.73
3416 14599 1.069513 CTAATGGGTGACGGCCGATTA 59.930 52.381 35.90 21.69 37.90 1.75
3433 14616 5.079406 CCGATTAAACAACACACAATCGAG 58.921 41.667 14.56 3.77 46.68 4.04
3620 14813 2.511900 GGGTGTGTGGGGTTTCGA 59.488 61.111 0.00 0.00 0.00 3.71
3633 14826 2.486982 GGGTTTCGAGTCCTTAAAAGCC 59.513 50.000 7.66 0.00 40.71 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.034337 TCGTGGTTGGCTAGGTGAAC 59.966 55.000 0.00 0.00 0.00 3.18
3 4 0.034896 AAGTCGTGGTTGGCTAGGTG 59.965 55.000 0.00 0.00 0.00 4.00
5 6 0.391263 GGAAGTCGTGGTTGGCTAGG 60.391 60.000 0.00 0.00 0.00 3.02
6 7 0.608640 AGGAAGTCGTGGTTGGCTAG 59.391 55.000 0.00 0.00 0.00 3.42
7 8 0.606604 GAGGAAGTCGTGGTTGGCTA 59.393 55.000 0.00 0.00 0.00 3.93
10 11 4.261888 CGAGGAAGTCGTGGTTGG 57.738 61.111 0.00 0.00 44.20 3.77
18 19 2.232298 CTGCTGGGGTCGAGGAAGTC 62.232 65.000 0.00 0.00 0.00 3.01
19 20 2.203788 TGCTGGGGTCGAGGAAGT 60.204 61.111 0.00 0.00 0.00 3.01
20 21 2.581354 CTGCTGGGGTCGAGGAAG 59.419 66.667 0.00 0.00 0.00 3.46
21 22 3.706373 GCTGCTGGGGTCGAGGAA 61.706 66.667 0.00 0.00 0.00 3.36
23 24 4.463879 CTGCTGCTGGGGTCGAGG 62.464 72.222 0.00 0.00 0.00 4.63
34 35 3.495543 GCTCCAAGTAGCTGCTGC 58.504 61.111 13.43 11.60 39.50 5.25
40 41 7.240414 CTAAAGACATTTAGCTCCAAGTAGC 57.760 40.000 0.00 0.00 40.98 3.58
52 53 9.126151 TGATTTTGTGACCACTAAAGACATTTA 57.874 29.630 13.27 0.00 38.85 1.40
53 54 7.920682 GTGATTTTGTGACCACTAAAGACATTT 59.079 33.333 13.27 0.00 38.85 2.32
54 55 7.425606 GTGATTTTGTGACCACTAAAGACATT 58.574 34.615 13.27 0.00 38.85 2.71
55 56 6.016276 GGTGATTTTGTGACCACTAAAGACAT 60.016 38.462 13.27 0.20 38.85 3.06
56 57 5.298276 GGTGATTTTGTGACCACTAAAGACA 59.702 40.000 13.27 12.42 38.85 3.41
57 58 5.298276 TGGTGATTTTGTGACCACTAAAGAC 59.702 40.000 13.27 11.76 39.34 3.01
58 59 5.441500 TGGTGATTTTGTGACCACTAAAGA 58.558 37.500 13.27 3.09 39.34 2.52
59 60 5.762045 CTGGTGATTTTGTGACCACTAAAG 58.238 41.667 13.27 0.00 39.34 1.85
60 61 4.037446 GCTGGTGATTTTGTGACCACTAAA 59.963 41.667 10.98 10.98 39.34 1.85
61 62 3.568007 GCTGGTGATTTTGTGACCACTAA 59.432 43.478 1.62 0.00 39.34 2.24
62 63 3.146066 GCTGGTGATTTTGTGACCACTA 58.854 45.455 1.62 0.00 39.34 2.74
63 64 1.956477 GCTGGTGATTTTGTGACCACT 59.044 47.619 1.62 0.00 39.34 4.00
64 65 1.680735 TGCTGGTGATTTTGTGACCAC 59.319 47.619 0.00 0.00 39.34 4.16
65 66 2.064434 TGCTGGTGATTTTGTGACCA 57.936 45.000 0.00 0.00 42.19 4.02
66 67 2.742774 GTTGCTGGTGATTTTGTGACC 58.257 47.619 0.00 0.00 34.23 4.02
67 68 2.032799 TCGTTGCTGGTGATTTTGTGAC 59.967 45.455 0.00 0.00 0.00 3.67
68 69 2.032799 GTCGTTGCTGGTGATTTTGTGA 59.967 45.455 0.00 0.00 0.00 3.58
69 70 2.384382 GTCGTTGCTGGTGATTTTGTG 58.616 47.619 0.00 0.00 0.00 3.33
70 71 1.002900 CGTCGTTGCTGGTGATTTTGT 60.003 47.619 0.00 0.00 0.00 2.83
71 72 1.002900 ACGTCGTTGCTGGTGATTTTG 60.003 47.619 0.00 0.00 0.00 2.44
72 73 1.263217 GACGTCGTTGCTGGTGATTTT 59.737 47.619 0.00 0.00 0.00 1.82
73 74 0.865769 GACGTCGTTGCTGGTGATTT 59.134 50.000 0.00 0.00 0.00 2.17
74 75 1.282248 CGACGTCGTTGCTGGTGATT 61.282 55.000 29.08 0.00 34.11 2.57
204 205 2.609737 CGAGTAGATATTGCGGAACCCC 60.610 54.545 0.00 0.00 0.00 4.95
258 259 3.562681 TAGGCACCCCTGGCACTCT 62.563 63.158 0.00 0.00 45.63 3.24
259 260 3.009115 TAGGCACCCCTGGCACTC 61.009 66.667 0.00 0.00 45.63 3.51
266 267 4.029809 GGCGTTGTAGGCACCCCT 62.030 66.667 0.00 0.00 45.61 4.79
267 268 3.853698 TTGGCGTTGTAGGCACCCC 62.854 63.158 0.00 0.00 46.56 4.95
268 269 2.281900 TTGGCGTTGTAGGCACCC 60.282 61.111 0.00 0.00 46.56 4.61
269 270 1.599797 AGTTGGCGTTGTAGGCACC 60.600 57.895 0.00 0.00 46.56 5.01
270 271 1.574428 CAGTTGGCGTTGTAGGCAC 59.426 57.895 0.00 0.00 46.56 5.01
284 285 1.302511 GTCGACCACATGGCCAGTT 60.303 57.895 13.05 0.00 39.32 3.16
285 286 2.347490 GTCGACCACATGGCCAGT 59.653 61.111 13.05 2.54 39.32 4.00
305 306 0.964358 CTCTACCCCGTCGTGGAACT 60.964 60.000 0.00 0.00 42.00 3.01
320 321 2.201490 CCATCCTCCCGCCCTCTA 59.799 66.667 0.00 0.00 0.00 2.43
326 327 4.554036 GACCAGCCATCCTCCCGC 62.554 72.222 0.00 0.00 0.00 6.13
329 330 4.554036 GCGGACCAGCCATCCTCC 62.554 72.222 0.00 0.00 35.94 4.30
370 374 2.159282 CGTCGCCATAGTAGAAGTGGTT 60.159 50.000 0.00 0.00 35.44 3.67
374 378 0.029035 CGCGTCGCCATAGTAGAAGT 59.971 55.000 12.44 0.00 0.00 3.01
382 386 2.354656 GAGCATCGCGTCGCCATA 60.355 61.111 12.44 0.00 0.00 2.74
388 392 3.084579 CAACAGGAGCATCGCGTC 58.915 61.111 5.77 0.00 34.37 5.19
389 393 3.121030 GCAACAGGAGCATCGCGT 61.121 61.111 5.77 0.00 34.37 6.01
393 397 2.048603 GGTGGGCAACAGGAGCATC 61.049 63.158 0.00 0.00 39.74 3.91
397 401 1.604593 CCTTGGTGGGCAACAGGAG 60.605 63.158 0.00 0.00 39.74 3.69
458 462 2.305927 AGGATTTGACCTGTGGTAGTGG 59.694 50.000 0.00 0.00 39.01 4.00
467 471 4.037684 CCGGTAGTAGTAGGATTTGACCTG 59.962 50.000 0.00 0.00 40.81 4.00
474 478 3.677156 ACACCCGGTAGTAGTAGGATT 57.323 47.619 0.00 0.00 0.00 3.01
475 479 4.166919 AGTTACACCCGGTAGTAGTAGGAT 59.833 45.833 0.00 0.00 32.49 3.24
477 481 3.891049 AGTTACACCCGGTAGTAGTAGG 58.109 50.000 0.00 0.00 32.49 3.18
478 482 5.428253 TGTAGTTACACCCGGTAGTAGTAG 58.572 45.833 0.00 0.00 32.49 2.57
589 593 9.533253 AAAATTTTCATGTAACTCACTTTGGAG 57.467 29.630 0.00 0.00 40.79 3.86
590 594 9.311916 CAAAATTTTCATGTAACTCACTTTGGA 57.688 29.630 0.00 0.00 0.00 3.53
591 595 8.063630 GCAAAATTTTCATGTAACTCACTTTGG 58.936 33.333 0.00 0.00 0.00 3.28
592 596 8.602328 TGCAAAATTTTCATGTAACTCACTTTG 58.398 29.630 0.00 0.00 0.00 2.77
593 597 8.715191 TGCAAAATTTTCATGTAACTCACTTT 57.285 26.923 0.00 0.00 0.00 2.66
594 598 8.715191 TTGCAAAATTTTCATGTAACTCACTT 57.285 26.923 0.00 0.00 0.00 3.16
595 599 7.981225 ACTTGCAAAATTTTCATGTAACTCACT 59.019 29.630 0.00 0.00 0.00 3.41
596 600 8.130307 ACTTGCAAAATTTTCATGTAACTCAC 57.870 30.769 0.00 0.00 0.00 3.51
597 601 8.602328 CAACTTGCAAAATTTTCATGTAACTCA 58.398 29.630 0.00 0.00 0.00 3.41
598 602 8.816144 TCAACTTGCAAAATTTTCATGTAACTC 58.184 29.630 0.00 0.00 0.00 3.01
599 603 8.603181 GTCAACTTGCAAAATTTTCATGTAACT 58.397 29.630 0.00 0.00 0.00 2.24
600 604 7.850492 GGTCAACTTGCAAAATTTTCATGTAAC 59.150 33.333 0.00 11.00 0.00 2.50
601 605 7.550551 TGGTCAACTTGCAAAATTTTCATGTAA 59.449 29.630 0.00 0.00 0.00 2.41
602 606 7.044181 TGGTCAACTTGCAAAATTTTCATGTA 58.956 30.769 0.00 0.00 0.00 2.29
603 607 5.879223 TGGTCAACTTGCAAAATTTTCATGT 59.121 32.000 0.00 7.92 0.00 3.21
604 608 6.360844 TGGTCAACTTGCAAAATTTTCATG 57.639 33.333 0.00 7.38 0.00 3.07
605 609 6.373774 TGTTGGTCAACTTGCAAAATTTTCAT 59.626 30.769 13.96 0.00 41.67 2.57
606 610 5.702670 TGTTGGTCAACTTGCAAAATTTTCA 59.297 32.000 13.96 0.01 41.67 2.69
607 611 6.128309 ACTGTTGGTCAACTTGCAAAATTTTC 60.128 34.615 13.96 0.00 41.67 2.29
608 612 5.704978 ACTGTTGGTCAACTTGCAAAATTTT 59.295 32.000 13.96 0.00 41.67 1.82
609 613 5.244755 ACTGTTGGTCAACTTGCAAAATTT 58.755 33.333 13.96 0.00 41.67 1.82
610 614 4.831107 ACTGTTGGTCAACTTGCAAAATT 58.169 34.783 13.96 0.00 41.67 1.82
611 615 4.470334 ACTGTTGGTCAACTTGCAAAAT 57.530 36.364 13.96 0.00 41.67 1.82
612 616 3.951775 ACTGTTGGTCAACTTGCAAAA 57.048 38.095 13.96 0.00 41.67 2.44
613 617 3.951775 AACTGTTGGTCAACTTGCAAA 57.048 38.095 13.96 0.00 41.67 3.68
614 618 3.951775 AAACTGTTGGTCAACTTGCAA 57.048 38.095 13.96 0.00 41.67 4.08
615 619 3.951775 AAAACTGTTGGTCAACTTGCA 57.048 38.095 13.96 0.00 41.67 4.08
654 658 9.444600 ACTCCTTTTTACGTGAAATACATATGT 57.555 29.630 13.93 13.93 0.00 2.29
658 662 8.395633 GCATACTCCTTTTTACGTGAAATACAT 58.604 33.333 6.31 0.00 0.00 2.29
659 663 7.604927 AGCATACTCCTTTTTACGTGAAATACA 59.395 33.333 6.31 0.00 0.00 2.29
660 664 7.971455 AGCATACTCCTTTTTACGTGAAATAC 58.029 34.615 6.31 0.00 0.00 1.89
661 665 9.656040 TTAGCATACTCCTTTTTACGTGAAATA 57.344 29.630 6.31 0.00 0.00 1.40
662 666 8.556213 TTAGCATACTCCTTTTTACGTGAAAT 57.444 30.769 6.31 0.00 0.00 2.17
663 667 7.966246 TTAGCATACTCCTTTTTACGTGAAA 57.034 32.000 0.73 0.73 0.00 2.69
664 668 7.966246 TTTAGCATACTCCTTTTTACGTGAA 57.034 32.000 0.00 0.00 0.00 3.18
665 669 7.966246 TTTTAGCATACTCCTTTTTACGTGA 57.034 32.000 0.00 0.00 0.00 4.35
666 670 8.287503 ACTTTTTAGCATACTCCTTTTTACGTG 58.712 33.333 0.00 0.00 0.00 4.49
667 671 8.387190 ACTTTTTAGCATACTCCTTTTTACGT 57.613 30.769 0.00 0.00 0.00 3.57
668 672 9.968743 CTACTTTTTAGCATACTCCTTTTTACG 57.031 33.333 0.00 0.00 0.00 3.18
715 719 9.855021 TGTACGCGTAGTATGTAGTATATAAGA 57.145 33.333 21.25 0.00 37.69 2.10
719 723 9.586435 TGTATGTACGCGTAGTATGTAGTATAT 57.414 33.333 21.25 2.43 37.69 0.86
720 724 8.860128 GTGTATGTACGCGTAGTATGTAGTATA 58.140 37.037 21.25 4.94 37.69 1.47
721 725 7.600375 AGTGTATGTACGCGTAGTATGTAGTAT 59.400 37.037 21.25 5.82 41.35 2.12
722 726 6.923508 AGTGTATGTACGCGTAGTATGTAGTA 59.076 38.462 21.25 0.00 41.35 1.82
723 727 5.755375 AGTGTATGTACGCGTAGTATGTAGT 59.245 40.000 21.25 10.26 41.35 2.73
724 728 6.220579 AGTGTATGTACGCGTAGTATGTAG 57.779 41.667 21.25 0.00 41.35 2.74
725 729 5.177511 GGAGTGTATGTACGCGTAGTATGTA 59.822 44.000 21.25 8.03 41.35 2.29
726 730 4.024556 GGAGTGTATGTACGCGTAGTATGT 60.025 45.833 21.25 6.62 41.35 2.29
729 733 3.530535 TGGAGTGTATGTACGCGTAGTA 58.469 45.455 21.25 12.49 41.35 1.82
730 734 2.358957 TGGAGTGTATGTACGCGTAGT 58.641 47.619 21.25 14.01 41.35 2.73
731 735 3.409851 TTGGAGTGTATGTACGCGTAG 57.590 47.619 21.25 0.00 41.35 3.51
733 737 2.953466 ATTGGAGTGTATGTACGCGT 57.047 45.000 19.17 19.17 41.35 6.01
754 931 9.783081 TTCGTATGTTGTAGGTAGTATCTATCA 57.217 33.333 0.00 0.00 0.00 2.15
757 934 9.394767 TGTTTCGTATGTTGTAGGTAGTATCTA 57.605 33.333 0.00 0.00 0.00 1.98
759 936 8.915871 TTGTTTCGTATGTTGTAGGTAGTATC 57.084 34.615 0.00 0.00 0.00 2.24
761 938 9.539825 TTTTTGTTTCGTATGTTGTAGGTAGTA 57.460 29.630 0.00 0.00 0.00 1.82
762 939 8.436046 TTTTTGTTTCGTATGTTGTAGGTAGT 57.564 30.769 0.00 0.00 0.00 2.73
767 944 7.364200 TCCCATTTTTGTTTCGTATGTTGTAG 58.636 34.615 0.00 0.00 0.00 2.74
771 948 6.399639 ACTCCCATTTTTGTTTCGTATGTT 57.600 33.333 0.00 0.00 0.00 2.71
777 954 7.327518 GGTGTAATTACTCCCATTTTTGTTTCG 59.672 37.037 21.21 0.00 34.61 3.46
778 955 8.364894 AGGTGTAATTACTCCCATTTTTGTTTC 58.635 33.333 25.88 4.14 39.92 2.78
779 956 8.147704 CAGGTGTAATTACTCCCATTTTTGTTT 58.852 33.333 25.88 7.31 39.92 2.83
781 958 6.210584 CCAGGTGTAATTACTCCCATTTTTGT 59.789 38.462 25.88 8.49 39.92 2.83
783 960 6.319715 ACCAGGTGTAATTACTCCCATTTTT 58.680 36.000 25.88 9.68 39.92 1.94
785 962 5.506708 GACCAGGTGTAATTACTCCCATTT 58.493 41.667 25.88 12.87 39.92 2.32
786 963 4.383770 CGACCAGGTGTAATTACTCCCATT 60.384 45.833 25.88 14.30 39.92 3.16
787 964 3.134081 CGACCAGGTGTAATTACTCCCAT 59.866 47.826 25.88 15.49 39.92 4.00
788 965 2.498481 CGACCAGGTGTAATTACTCCCA 59.502 50.000 25.88 1.72 39.92 4.37
789 966 2.498885 ACGACCAGGTGTAATTACTCCC 59.501 50.000 25.88 19.77 39.92 4.30
790 967 3.881937 ACGACCAGGTGTAATTACTCC 57.118 47.619 23.38 23.38 39.50 3.85
791 968 4.641989 TCCTACGACCAGGTGTAATTACTC 59.358 45.833 16.33 12.47 36.99 2.59
792 969 4.603131 TCCTACGACCAGGTGTAATTACT 58.397 43.478 16.33 0.00 36.99 2.24
793 970 4.989279 TCCTACGACCAGGTGTAATTAC 57.011 45.455 8.75 8.75 36.99 1.89
794 971 5.245751 TGTTTCCTACGACCAGGTGTAATTA 59.754 40.000 0.00 0.00 36.99 1.40
796 973 3.579586 TGTTTCCTACGACCAGGTGTAAT 59.420 43.478 0.00 0.00 36.99 1.89
797 974 2.964464 TGTTTCCTACGACCAGGTGTAA 59.036 45.455 0.00 0.00 36.99 2.41
798 975 2.596346 TGTTTCCTACGACCAGGTGTA 58.404 47.619 0.00 0.00 36.99 2.90
800 977 2.762535 ATGTTTCCTACGACCAGGTG 57.237 50.000 0.00 0.00 36.99 4.00
801 978 3.181448 ACAAATGTTTCCTACGACCAGGT 60.181 43.478 0.00 0.00 36.99 4.00
802 979 3.408634 ACAAATGTTTCCTACGACCAGG 58.591 45.455 0.00 0.00 37.00 4.45
803 980 3.435671 GGACAAATGTTTCCTACGACCAG 59.564 47.826 0.00 0.00 0.00 4.00
804 981 3.071892 AGGACAAATGTTTCCTACGACCA 59.928 43.478 0.00 0.00 40.70 4.02
805 982 3.671716 AGGACAAATGTTTCCTACGACC 58.328 45.455 0.00 0.00 40.70 4.79
806 983 9.924650 ATATATAGGACAAATGTTTCCTACGAC 57.075 33.333 0.00 0.00 45.37 4.34
851 3377 1.338107 ACGGGTGTCACATCTCTCAA 58.662 50.000 5.12 0.00 0.00 3.02
880 3406 9.778741 GGATACATATATGACTTTCAGGTTTGA 57.221 33.333 19.63 0.00 0.00 2.69
911 3447 5.724328 TGCAAGATAGTGAAGAACAGTAGG 58.276 41.667 0.00 0.00 37.75 3.18
915 3451 4.993584 ACACTGCAAGATAGTGAAGAACAG 59.006 41.667 11.65 0.00 46.52 3.16
1009 3604 4.103311 GGTCCTCTTGCTACCTGGAATATT 59.897 45.833 0.00 0.00 0.00 1.28
1033 3628 8.470805 CCTACCTATTAGCATAATCTTCGTGAT 58.529 37.037 0.00 0.00 36.89 3.06
1037 3632 6.868622 AGCCTACCTATTAGCATAATCTTCG 58.131 40.000 0.00 0.00 0.00 3.79
1063 3658 5.524646 ACATGTGAAAAGATGGCAAAAGTTG 59.475 36.000 0.00 0.00 0.00 3.16
1083 3679 7.345192 GCTACTGGTATTTAAATCGTCACATG 58.655 38.462 3.39 0.00 0.00 3.21
1115 3715 7.639039 TGCACTTTTGTCATAGAAAACACTAG 58.361 34.615 0.00 0.00 0.00 2.57
1136 3738 7.183580 TGCATGGTAAATTTTAAAGTTGCAC 57.816 32.000 8.05 0.00 32.01 4.57
1137 3739 7.443575 ACATGCATGGTAAATTTTAAAGTTGCA 59.556 29.630 29.41 14.40 40.23 4.08
1184 3787 8.593492 AGCTCCTTGTTTGAAATTTTAATGTC 57.407 30.769 0.00 0.00 0.00 3.06
1186 3789 8.822652 AGAGCTCCTTGTTTGAAATTTTAATG 57.177 30.769 10.93 0.00 0.00 1.90
1205 3808 2.486951 TATACGCAAACCGAGAGCTC 57.513 50.000 5.27 5.27 41.02 4.09
1207 3810 4.046462 TGTATTATACGCAAACCGAGAGC 58.954 43.478 0.00 0.00 41.02 4.09
1213 3816 9.098746 CATAAATTCGTGTATTATACGCAAACC 57.901 33.333 15.03 0.00 41.08 3.27
1230 3833 8.909708 TCAACAAGCTAAATTCCATAAATTCG 57.090 30.769 0.00 0.00 36.54 3.34
1289 3900 8.208718 TCCAAGATCATCGGTAGTTTAAATTG 57.791 34.615 0.00 0.00 0.00 2.32
1351 3984 8.263640 ACTGAGATGAAAGCATATGTTACTTCT 58.736 33.333 4.29 9.03 34.11 2.85
1417 4053 7.066284 CCCTTTCTATGCCATATTAGCACATAC 59.934 40.741 0.00 0.00 44.40 2.39
1461 4097 3.492102 TGCTACTCTTCTTGCAAAGGT 57.508 42.857 0.00 0.00 46.24 3.50
1476 4112 7.481798 CCTCATAATTCTTTTCGTTGTTGCTAC 59.518 37.037 0.00 0.00 0.00 3.58
1482 4118 4.764823 TGGCCTCATAATTCTTTTCGTTGT 59.235 37.500 3.32 0.00 0.00 3.32
1525 4164 3.259876 ACATGTACCGTTTTGGAGCTAGA 59.740 43.478 0.00 0.00 42.00 2.43
1540 4179 6.598457 TCTTCACTACCTCTGAGTACATGTAC 59.402 42.308 25.51 25.51 36.35 2.90
1603 4246 2.757868 TCCTTTGAAAACCACACCACAG 59.242 45.455 0.00 0.00 0.00 3.66
1605 4248 3.445805 TCTTCCTTTGAAAACCACACCAC 59.554 43.478 0.00 0.00 0.00 4.16
1630 4273 1.398390 GCAACCAGACGACCATCATTC 59.602 52.381 0.00 0.00 0.00 2.67
1631 4274 1.003580 AGCAACCAGACGACCATCATT 59.996 47.619 0.00 0.00 0.00 2.57
1811 4454 7.094805 GCTCTCTGAGTAGATGTACTTATCCAG 60.095 44.444 3.73 6.99 39.78 3.86
1836 4479 4.384098 CCCATCCTAAAATTTCTTTGGGGC 60.384 45.833 13.09 0.00 0.00 5.80
1942 4585 8.443176 AGAAGGATATTTTGAGGCTTGATATCA 58.557 33.333 0.00 0.00 33.46 2.15
2005 4648 3.550275 TCGTATGACACAATTTAGCGAGC 59.450 43.478 0.00 0.00 0.00 5.03
2083 4729 4.930463 GAAGGTTCGAGAATGAACTTCC 57.070 45.455 1.12 0.00 45.90 3.46
2133 4779 6.422333 TCCAACAACATCATTCCATAGCTAA 58.578 36.000 0.00 0.00 0.00 3.09
2137 4783 6.016527 CCATCTCCAACAACATCATTCCATAG 60.017 42.308 0.00 0.00 0.00 2.23
2212 4858 7.725397 TGGTCATAAATCCAATCTGGGAAATAG 59.275 37.037 0.00 0.00 41.12 1.73
2261 4907 4.397420 TCACTTGTTACATCACATGCCTT 58.603 39.130 0.00 0.00 0.00 4.35
2289 4935 4.718774 AGGTCATCTTTCTTGCTATCTCCA 59.281 41.667 0.00 0.00 0.00 3.86
2314 4960 0.168128 GTACGCACCACAAGCCAATC 59.832 55.000 0.00 0.00 0.00 2.67
2338 4984 3.098377 TGTAGGGCGATACACAGGTAAA 58.902 45.455 0.00 0.00 30.76 2.01
2366 5012 4.006319 CTCTCAAACATTTCCAGGACTCC 58.994 47.826 0.00 0.00 0.00 3.85
2371 5017 4.077822 AGCTTCTCTCAAACATTTCCAGG 58.922 43.478 0.00 0.00 0.00 4.45
2406 5052 0.587768 GTTTTGCTTTGGTGGCATGC 59.412 50.000 9.90 9.90 39.54 4.06
2445 5091 8.398878 ACTGAACAAAAATACGGGAGAAATAA 57.601 30.769 0.00 0.00 0.00 1.40
2495 5143 6.743575 AAGTGTGTAGATCAAGTTAATGCC 57.256 37.500 0.00 0.00 0.00 4.40
2527 5176 3.128589 GTGAACTGAACTTCCACTGCAAA 59.871 43.478 0.00 0.00 0.00 3.68
2536 5185 5.408604 ACATCCGTATTGTGAACTGAACTTC 59.591 40.000 0.00 0.00 0.00 3.01
2545 5194 5.228665 TCGTTTGTACATCCGTATTGTGAA 58.771 37.500 12.61 0.00 0.00 3.18
2554 5203 3.120338 ACTTGCATTCGTTTGTACATCCG 60.120 43.478 0.00 2.09 0.00 4.18
2566 5215 3.482786 GCACTTGTAGAACTTGCATTCG 58.517 45.455 0.00 0.00 33.57 3.34
2567 5216 3.253188 TGGCACTTGTAGAACTTGCATTC 59.747 43.478 0.00 0.00 34.76 2.67
2568 5217 3.221771 TGGCACTTGTAGAACTTGCATT 58.778 40.909 0.00 0.00 34.76 3.56
2569 5218 2.816087 CTGGCACTTGTAGAACTTGCAT 59.184 45.455 0.00 0.00 34.76 3.96
2582 5231 5.424895 ACTTATCTTCTCAGATCTGGCACTT 59.575 40.000 22.42 6.56 40.53 3.16
2586 5235 4.057432 GCACTTATCTTCTCAGATCTGGC 58.943 47.826 22.42 9.36 40.53 4.85
2607 5256 7.394872 CGTTCTAGTATTTCTGAATTCACAGC 58.605 38.462 3.38 0.00 37.75 4.40
2619 5269 5.397326 AGTTGACGACCGTTCTAGTATTTC 58.603 41.667 0.00 0.00 0.00 2.17
2628 5278 2.466846 TCAAAGAGTTGACGACCGTTC 58.533 47.619 0.00 0.00 38.88 3.95
2637 5287 7.875041 GGCTTATATATCTGCTCAAAGAGTTGA 59.125 37.037 8.97 0.00 41.57 3.18
2697 5358 3.745797 GCAGGTCACCTTCTCAAAAGAGT 60.746 47.826 0.00 0.00 31.75 3.24
2699 5360 2.172505 TGCAGGTCACCTTCTCAAAAGA 59.827 45.455 0.00 0.00 0.00 2.52
2700 5361 2.575532 TGCAGGTCACCTTCTCAAAAG 58.424 47.619 0.00 0.00 0.00 2.27
2701 5362 2.727123 TGCAGGTCACCTTCTCAAAA 57.273 45.000 0.00 0.00 0.00 2.44
2741 5403 3.184178 CCGAATTTTCATTGCGCTTGTTT 59.816 39.130 9.73 0.74 0.00 2.83
2771 5433 9.618890 GTAGGTCATGCATACATATGGAATATT 57.381 33.333 7.80 0.00 37.44 1.28
2797 5463 4.094590 GGAAGATGTTCATGCTCTTGAGTG 59.905 45.833 4.83 0.00 33.93 3.51
2799 5465 3.309138 CGGAAGATGTTCATGCTCTTGAG 59.691 47.826 4.83 0.00 33.93 3.02
2810 5476 5.917541 TGTAGACAAAACGGAAGATGTTC 57.082 39.130 0.00 0.00 0.00 3.18
2811 5477 5.995282 TCATGTAGACAAAACGGAAGATGTT 59.005 36.000 0.00 0.00 0.00 2.71
2812 5478 5.547465 TCATGTAGACAAAACGGAAGATGT 58.453 37.500 0.00 0.00 0.00 3.06
2813 5479 6.073276 TGTTCATGTAGACAAAACGGAAGATG 60.073 38.462 0.00 0.00 31.94 2.90
2814 5480 5.995282 TGTTCATGTAGACAAAACGGAAGAT 59.005 36.000 0.00 0.00 31.94 2.40
2815 5481 5.361427 TGTTCATGTAGACAAAACGGAAGA 58.639 37.500 0.00 0.00 31.94 2.87
2816 5482 5.666969 TGTTCATGTAGACAAAACGGAAG 57.333 39.130 0.00 0.00 31.94 3.46
2823 5489 6.929049 ACTTCGAAGATGTTCATGTAGACAAA 59.071 34.615 31.08 0.00 42.43 2.83
2951 5617 5.596836 ACAAAGTTTTCTCATTTGAGGCA 57.403 34.783 7.68 0.00 42.30 4.75
2972 5638 7.431376 TCGACGAGATGAAGACAATTATTGTAC 59.569 37.037 10.82 6.52 45.52 2.90
2977 5643 7.042456 CCATTTCGACGAGATGAAGACAATTAT 60.042 37.037 25.24 0.00 0.00 1.28
3038 5704 8.100791 TCAGATGGCTGTAACTTTTACATAAGT 58.899 33.333 0.00 0.00 42.84 2.24
3072 5739 1.619654 CACTTTTGCCCCATGACAGA 58.380 50.000 0.00 0.00 0.00 3.41
3163 5832 2.094234 TGTCGATTCGAGGCATCTTCAA 60.094 45.455 9.42 0.00 36.23 2.69
3255 10183 1.821759 CCACAGGCCACAAACGACA 60.822 57.895 5.01 0.00 0.00 4.35
3274 10202 8.068892 TGTAACATCAGTTTGGTTTTTAGGTT 57.931 30.769 0.00 0.00 39.15 3.50
3297 14479 5.997384 AACTCGGATTTAGGTAAGTCTGT 57.003 39.130 2.15 0.00 32.21 3.41
3332 14514 5.651139 ACTCCAGATCACATCCAAATCTTTG 59.349 40.000 0.00 0.00 37.90 2.77
3350 14532 4.404715 TCCCGTATAAGAAAAGGACTCCAG 59.595 45.833 0.00 0.00 0.00 3.86
3377 14559 6.323996 CCATTAGGTATATAAGAGGCGGATGA 59.676 42.308 0.00 0.00 0.00 2.92
3400 14583 0.674269 GTTTAATCGGCCGTCACCCA 60.674 55.000 27.15 4.32 0.00 4.51
3416 14599 3.773860 TTGCTCGATTGTGTGTTGTTT 57.226 38.095 0.00 0.00 0.00 2.83
3433 14616 7.158099 AGGTAAAAAGTGGTAGATGATTTGC 57.842 36.000 0.00 0.00 0.00 3.68
3469 14655 5.167845 CGAGGAAGAAGAAGAAGAAGAAGG 58.832 45.833 0.00 0.00 0.00 3.46
3620 14813 1.001269 GCGGGGGCTTTTAAGGACT 60.001 57.895 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.