Multiple sequence alignment - TraesCS4A01G498800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G498800 chr4A 100.000 2822 0 0 1 2822 743981423 743984244 0.000000e+00 5212.0
1 TraesCS4A01G498800 chr4A 87.464 351 34 4 603 943 410040154 410040504 2.040000e-106 396.0
2 TraesCS4A01G498800 chr4A 81.106 217 12 9 27 234 410039909 410040105 2.270000e-31 147.0
3 TraesCS4A01G498800 chr4A 85.057 87 8 4 1935 2019 92200768 92200851 1.800000e-12 84.2
4 TraesCS4A01G498800 chr4A 85.057 87 8 4 1935 2019 354468682 354468765 1.800000e-12 84.2
5 TraesCS4A01G498800 chr4A 85.057 87 8 4 1935 2019 639469990 639470073 1.800000e-12 84.2
6 TraesCS4A01G498800 chr7A 91.200 1875 102 27 16 1857 1317810 1315966 0.000000e+00 2490.0
7 TraesCS4A01G498800 chr7A 92.513 187 10 2 2079 2262 1315785 1315600 5.990000e-67 265.0
8 TraesCS4A01G498800 chr7A 81.579 228 7 18 16 234 211061766 211061565 3.760000e-34 156.0
9 TraesCS4A01G498800 chr7A 80.769 234 11 16 10 234 512541040 512541248 4.870000e-33 152.0
10 TraesCS4A01G498800 chr7A 85.057 87 8 4 1935 2019 551730075 551730158 1.800000e-12 84.2
11 TraesCS4A01G498800 chr7A 85.057 87 8 4 1935 2019 551799508 551799591 1.800000e-12 84.2
12 TraesCS4A01G498800 chr7A 85.542 83 9 3 1938 2019 627504599 627504519 1.800000e-12 84.2
13 TraesCS4A01G498800 chr7D 89.136 1933 118 40 10 1916 1324372 1326238 0.000000e+00 2322.0
14 TraesCS4A01G498800 chr7D 78.443 334 39 18 1341 1661 32446044 32446357 1.330000e-43 187.0
15 TraesCS4A01G498800 chr6B 86.424 302 30 6 604 895 616722482 616722782 1.260000e-83 320.0
16 TraesCS4A01G498800 chr6B 86.909 275 26 5 604 868 39921455 39921729 1.640000e-77 300.0
17 TraesCS4A01G498800 chr7B 86.379 301 30 6 604 893 424959651 424959951 4.540000e-83 318.0
18 TraesCS4A01G498800 chr7B 86.475 244 23 5 635 868 624782710 624782953 2.790000e-65 259.0
19 TraesCS4A01G498800 chr3A 85.430 302 28 7 604 895 606614543 606614248 1.640000e-77 300.0
20 TraesCS4A01G498800 chr3A 84.106 302 32 7 604 895 234646355 234646060 7.700000e-71 278.0
21 TraesCS4A01G498800 chr3A 83.482 224 9 14 20 234 234646609 234646405 1.730000e-42 183.0
22 TraesCS4A01G498800 chr3A 83.482 224 9 14 20 234 606614797 606614593 1.730000e-42 183.0
23 TraesCS4A01G498800 chr3A 82.456 228 7 15 16 234 688932314 688932111 4.830000e-38 169.0
24 TraesCS4A01G498800 chr1A 84.681 235 31 5 2396 2630 536363849 536364078 2.190000e-56 230.0
25 TraesCS4A01G498800 chr1A 85.057 87 8 4 1935 2019 16129458 16129375 1.800000e-12 84.2
26 TraesCS4A01G498800 chr1A 85.057 87 8 4 1935 2019 172803674 172803757 1.800000e-12 84.2
27 TraesCS4A01G498800 chr1A 85.057 87 8 4 1935 2019 361108023 361108106 1.800000e-12 84.2
28 TraesCS4A01G498800 chr3D 82.917 240 31 8 2395 2630 180243650 180243883 1.020000e-49 207.0
29 TraesCS4A01G498800 chr5A 82.114 246 35 9 2396 2638 322833564 322833803 4.770000e-48 202.0
30 TraesCS4A01G498800 chr5A 81.673 251 37 8 2386 2630 450217930 450217683 1.710000e-47 200.0
31 TraesCS4A01G498800 chr1D 83.408 223 32 5 2388 2608 493735549 493735330 4.770000e-48 202.0
32 TraesCS4A01G498800 chr1D 83.036 224 31 5 2395 2618 340319008 340318792 2.220000e-46 196.0
33 TraesCS4A01G498800 chr1D 83.036 224 31 7 2396 2618 442153872 442153655 2.220000e-46 196.0
34 TraesCS4A01G498800 chr3B 82.667 225 34 5 2397 2618 1024525 1024303 7.980000e-46 195.0
35 TraesCS4A01G498800 chr5B 81.200 250 32 13 2387 2632 602271309 602271071 1.330000e-43 187.0
36 TraesCS4A01G498800 chr6A 81.579 228 14 16 16 234 283881243 283881035 2.250000e-36 163.0
37 TraesCS4A01G498800 chr2A 80.342 234 11 17 10 234 107526630 107526837 8.150000e-31 145.0
38 TraesCS4A01G498800 chr2A 80.342 234 11 17 10 234 107735270 107735477 8.150000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G498800 chr4A 743981423 743984244 2821 False 5212.0 5212 100.0000 1 2822 1 chr4A.!!$F4 2821
1 TraesCS4A01G498800 chr4A 410039909 410040504 595 False 271.5 396 84.2850 27 943 2 chr4A.!!$F5 916
2 TraesCS4A01G498800 chr7A 1315600 1317810 2210 True 1377.5 2490 91.8565 16 2262 2 chr7A.!!$R3 2246
3 TraesCS4A01G498800 chr7D 1324372 1326238 1866 False 2322.0 2322 89.1360 10 1916 1 chr7D.!!$F1 1906
4 TraesCS4A01G498800 chr3A 606614248 606614797 549 True 241.5 300 84.4560 20 895 2 chr3A.!!$R3 875
5 TraesCS4A01G498800 chr3A 234646060 234646609 549 True 230.5 278 83.7940 20 895 2 chr3A.!!$R2 875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 419 0.036875 ACTTCTGGCCTGGTACTTGC 59.963 55.0 10.07 0.0 0.00 4.01 F
1021 1071 0.183492 GGGGCACATTGCTGATCCTA 59.817 55.0 0.00 0.0 44.28 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 1776 0.036388 AATCACGCACGGATCCTGTT 60.036 50.0 10.75 0.0 0.0 3.16 R
1936 2001 0.104487 ATGAGGCTGCTGAGTCATCG 59.896 55.0 0.00 0.0 0.0 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 2.425312 CAGCCAGTCTCCTACACTACAG 59.575 54.545 0.00 0.00 0.00 2.74
106 115 4.880696 CCTACACTACAGACTACACTACCC 59.119 50.000 0.00 0.00 0.00 3.69
206 228 2.233271 CCCTAAGCCAATGTATGCAGG 58.767 52.381 0.00 0.00 0.00 4.85
234 256 5.359009 CACACTTCCAGGCTAATCAATCATT 59.641 40.000 0.00 0.00 0.00 2.57
235 257 5.954150 ACACTTCCAGGCTAATCAATCATTT 59.046 36.000 0.00 0.00 0.00 2.32
236 258 6.127535 ACACTTCCAGGCTAATCAATCATTTG 60.128 38.462 0.00 0.00 0.00 2.32
237 259 4.924305 TCCAGGCTAATCAATCATTTGC 57.076 40.909 0.00 0.00 41.13 3.68
238 260 4.539726 TCCAGGCTAATCAATCATTTGCT 58.460 39.130 0.00 0.00 41.47 3.91
239 261 4.957954 TCCAGGCTAATCAATCATTTGCTT 59.042 37.500 0.00 0.00 41.47 3.91
240 262 5.422970 TCCAGGCTAATCAATCATTTGCTTT 59.577 36.000 0.00 0.00 41.47 3.51
241 263 5.522460 CCAGGCTAATCAATCATTTGCTTTG 59.478 40.000 0.00 1.81 41.47 2.77
242 264 5.006358 CAGGCTAATCAATCATTTGCTTTGC 59.994 40.000 0.00 0.00 41.47 3.68
307 341 1.002366 GCGTGATGACACAGCTAAGG 58.998 55.000 0.00 0.00 46.20 2.69
330 364 5.163884 GGTCTAATCCTCACGCTTAAACAAC 60.164 44.000 0.00 0.00 0.00 3.32
385 419 0.036875 ACTTCTGGCCTGGTACTTGC 59.963 55.000 10.07 0.00 0.00 4.01
391 425 3.127533 CCTGGTACTTGCAGCGGC 61.128 66.667 0.31 0.31 41.68 6.53
442 476 3.001736 GCACGCACCTAATCAAGATTCTC 59.998 47.826 0.00 0.00 32.50 2.87
455 489 2.205074 AGATTCTCGCGCTTGGTTATG 58.795 47.619 5.56 0.00 0.00 1.90
679 713 2.095161 GGGAGTAGAATATGCGTCCGAG 60.095 54.545 0.00 0.00 0.00 4.63
696 730 2.887568 GCTGATCGTCTGGTGCGG 60.888 66.667 0.00 0.00 0.00 5.69
732 776 0.397941 TCCACTTCAGCTTGGTGAGG 59.602 55.000 9.78 9.78 34.19 3.86
776 820 2.279120 CTGATCCCTGAGCGTCGC 60.279 66.667 9.80 9.80 0.00 5.19
836 880 0.404040 AGGACGGCCAATTCTTTCCA 59.596 50.000 11.69 0.00 36.29 3.53
844 894 3.056821 GGCCAATTCTTTCCACTTGGTAC 60.057 47.826 0.00 0.00 40.23 3.34
887 937 6.100279 TCCCTATCTATAAAGGCCATGCATAG 59.900 42.308 5.01 6.43 0.00 2.23
930 980 1.205655 TGGAGCTGTACTTGCTAGCTG 59.794 52.381 17.23 11.26 46.95 4.24
950 1000 4.507388 GCTGATTAGCTTCAGACATCTCAC 59.493 45.833 17.79 0.00 44.88 3.51
997 1047 4.093011 TCTTTCTGAGGAGGAAGGAGAAG 58.907 47.826 0.00 0.00 35.66 2.85
1021 1071 0.183492 GGGGCACATTGCTGATCCTA 59.817 55.000 0.00 0.00 44.28 2.94
1077 1127 3.003068 CCATCTTCAACGAGAATGGCATC 59.997 47.826 0.00 0.00 35.25 3.91
1083 1133 2.301505 CGAGAATGGCATCGTGGAC 58.698 57.895 0.00 0.00 34.30 4.02
1222 1272 6.543831 CAGTGGGAAGAAATGGAAGGTATTAG 59.456 42.308 0.00 0.00 0.00 1.73
1380 1433 2.346365 GAAGGGACGGTGGTGGTC 59.654 66.667 0.00 0.00 0.00 4.02
1508 1567 2.878429 CTGTACTCGCCGCTGTCT 59.122 61.111 0.00 0.00 0.00 3.41
1547 1606 2.601666 AGGACGGAGCAGCAGACA 60.602 61.111 0.00 0.00 0.00 3.41
1567 1626 4.452733 GTCGAGGGGCAACGGGAG 62.453 72.222 0.00 0.00 37.60 4.30
1588 1647 2.344741 GCTACAACTACAGCTACAACGC 59.655 50.000 0.00 0.00 34.86 4.84
1692 1751 4.768130 TCAGACTGTGAGTAGCTACAAC 57.232 45.455 25.28 21.24 0.00 3.32
1693 1752 3.506455 TCAGACTGTGAGTAGCTACAACC 59.494 47.826 25.28 13.97 0.00 3.77
1699 1761 3.255888 TGTGAGTAGCTACAACCTCTGTG 59.744 47.826 25.28 0.00 39.20 3.66
1708 1773 6.753180 AGCTACAACCTCTGTGTATGATATG 58.247 40.000 0.00 0.00 39.20 1.78
1710 1775 6.986817 GCTACAACCTCTGTGTATGATATGTT 59.013 38.462 0.00 0.00 39.20 2.71
1711 1776 8.141909 GCTACAACCTCTGTGTATGATATGTTA 58.858 37.037 0.00 0.00 39.20 2.41
1713 1778 8.718102 ACAACCTCTGTGTATGATATGTTAAC 57.282 34.615 0.00 0.00 36.69 2.01
1715 1780 8.820933 CAACCTCTGTGTATGATATGTTAACAG 58.179 37.037 14.65 0.00 35.90 3.16
1716 1781 7.500992 ACCTCTGTGTATGATATGTTAACAGG 58.499 38.462 14.65 6.80 35.42 4.00
1717 1782 7.344612 ACCTCTGTGTATGATATGTTAACAGGA 59.655 37.037 14.65 4.97 35.42 3.86
1718 1783 8.370940 CCTCTGTGTATGATATGTTAACAGGAT 58.629 37.037 14.65 9.72 35.42 3.24
1719 1784 9.416794 CTCTGTGTATGATATGTTAACAGGATC 57.583 37.037 19.44 19.44 35.42 3.36
1720 1785 8.367911 TCTGTGTATGATATGTTAACAGGATCC 58.632 37.037 21.74 2.48 35.42 3.36
1721 1786 7.151976 TGTGTATGATATGTTAACAGGATCCG 58.848 38.462 21.74 3.99 0.00 4.18
1724 1789 4.377021 TGATATGTTAACAGGATCCGTGC 58.623 43.478 21.74 3.34 0.00 5.34
1727 1792 0.719465 GTTAACAGGATCCGTGCGTG 59.281 55.000 5.98 0.72 0.00 5.34
1741 1806 3.427098 CCGTGCGTGATTAGAGACACTAA 60.427 47.826 0.00 0.00 43.89 2.24
1760 1825 0.462375 ATCCGTGCATTAGCGTGGTA 59.538 50.000 0.00 0.00 46.23 3.25
1762 1827 1.134640 TCCGTGCATTAGCGTGGTAAT 60.135 47.619 0.00 0.00 46.23 1.89
1764 1829 2.867368 CCGTGCATTAGCGTGGTAATTA 59.133 45.455 1.75 0.00 46.23 1.40
1765 1830 3.496884 CCGTGCATTAGCGTGGTAATTAT 59.503 43.478 1.75 0.00 46.23 1.28
1766 1831 4.024387 CCGTGCATTAGCGTGGTAATTATT 60.024 41.667 1.75 0.00 46.23 1.40
1767 1832 4.903585 CGTGCATTAGCGTGGTAATTATTG 59.096 41.667 1.75 0.00 46.23 1.90
1768 1833 5.277106 CGTGCATTAGCGTGGTAATTATTGA 60.277 40.000 1.75 0.00 46.23 2.57
1769 1834 5.907391 GTGCATTAGCGTGGTAATTATTGAC 59.093 40.000 1.75 0.00 46.23 3.18
1770 1835 5.586643 TGCATTAGCGTGGTAATTATTGACA 59.413 36.000 1.75 0.00 46.23 3.58
1771 1836 5.907391 GCATTAGCGTGGTAATTATTGACAC 59.093 40.000 1.75 4.50 0.00 3.67
1853 1918 0.806868 ACGCATTGCTGAAGATGGTG 59.193 50.000 7.12 0.00 0.00 4.17
1854 1919 1.089112 CGCATTGCTGAAGATGGTGA 58.911 50.000 7.12 0.00 0.00 4.02
1855 1920 1.469703 CGCATTGCTGAAGATGGTGAA 59.530 47.619 7.12 0.00 0.00 3.18
1856 1921 2.477357 CGCATTGCTGAAGATGGTGAAG 60.477 50.000 7.12 0.00 0.00 3.02
1863 1928 0.450983 GAAGATGGTGAAGCAGCAGC 59.549 55.000 6.75 6.75 46.56 5.25
1867 1932 3.060615 GGTGAAGCAGCAGCAGGG 61.061 66.667 3.17 0.00 45.49 4.45
1887 1952 2.355209 GGGGATGTTGAGAGGAGACAAC 60.355 54.545 0.00 0.00 44.21 3.32
1902 1967 4.540824 GAGACAACATTTGAGAAACTGGC 58.459 43.478 0.00 0.00 0.00 4.85
1912 1977 2.266554 GAGAAACTGGCGATGACTCAG 58.733 52.381 0.00 0.00 34.91 3.35
1916 1981 0.671781 ACTGGCGATGACTCAGCAAC 60.672 55.000 0.00 0.00 32.19 4.17
1917 1982 0.671472 CTGGCGATGACTCAGCAACA 60.671 55.000 0.00 0.00 0.00 3.33
1918 1983 0.250252 TGGCGATGACTCAGCAACAA 60.250 50.000 0.00 0.00 0.00 2.83
1919 1984 0.445436 GGCGATGACTCAGCAACAAG 59.555 55.000 0.00 0.00 0.00 3.16
1920 1985 1.432514 GCGATGACTCAGCAACAAGA 58.567 50.000 0.00 0.00 0.00 3.02
1921 1986 1.392853 GCGATGACTCAGCAACAAGAG 59.607 52.381 0.00 0.00 37.87 2.85
1922 1987 1.392853 CGATGACTCAGCAACAAGAGC 59.607 52.381 0.00 0.00 35.28 4.09
1926 1991 0.179037 ACTCAGCAACAAGAGCAGCA 60.179 50.000 0.00 0.00 35.28 4.41
1928 1993 1.081376 CAGCAACAAGAGCAGCAGC 60.081 57.895 0.00 0.00 42.56 5.25
1929 1994 1.527611 AGCAACAAGAGCAGCAGCA 60.528 52.632 3.17 0.00 45.49 4.41
1930 1995 1.081376 GCAACAAGAGCAGCAGCAG 60.081 57.895 3.17 0.00 45.49 4.24
1931 1996 1.579932 CAACAAGAGCAGCAGCAGG 59.420 57.895 3.17 0.00 45.49 4.85
1932 1997 1.602888 AACAAGAGCAGCAGCAGGG 60.603 57.895 3.17 0.00 45.49 4.45
1933 1998 2.750637 CAAGAGCAGCAGCAGGGG 60.751 66.667 3.17 0.00 45.49 4.79
1934 1999 4.044439 AAGAGCAGCAGCAGGGGG 62.044 66.667 3.17 0.00 45.49 5.40
1948 2013 3.785859 GGGGGCGATGACTCAGCA 61.786 66.667 0.00 0.00 0.00 4.41
1949 2014 2.202987 GGGGCGATGACTCAGCAG 60.203 66.667 0.00 0.00 0.00 4.24
1950 2015 2.894387 GGGCGATGACTCAGCAGC 60.894 66.667 0.00 0.00 0.00 5.25
1951 2016 2.894387 GGCGATGACTCAGCAGCC 60.894 66.667 12.28 12.28 34.09 4.85
1952 2017 2.186384 GCGATGACTCAGCAGCCT 59.814 61.111 0.00 0.00 0.00 4.58
1953 2018 1.882167 GCGATGACTCAGCAGCCTC 60.882 63.158 0.00 0.00 0.00 4.70
1954 2019 1.514553 CGATGACTCAGCAGCCTCA 59.485 57.895 0.00 0.00 0.00 3.86
1955 2020 0.104487 CGATGACTCAGCAGCCTCAT 59.896 55.000 0.00 0.00 0.00 2.90
1956 2021 1.868469 GATGACTCAGCAGCCTCATC 58.132 55.000 0.00 0.00 34.02 2.92
1957 2022 1.138464 GATGACTCAGCAGCCTCATCA 59.862 52.381 12.17 3.25 39.16 3.07
1958 2023 0.978907 TGACTCAGCAGCCTCATCAA 59.021 50.000 0.00 0.00 0.00 2.57
1959 2024 1.066358 TGACTCAGCAGCCTCATCAAG 60.066 52.381 0.00 0.00 0.00 3.02
1960 2025 0.392729 ACTCAGCAGCCTCATCAAGC 60.393 55.000 0.00 0.00 0.00 4.01
1961 2026 0.107606 CTCAGCAGCCTCATCAAGCT 60.108 55.000 0.00 0.00 40.89 3.74
1962 2027 1.138464 CTCAGCAGCCTCATCAAGCTA 59.862 52.381 0.00 0.00 37.18 3.32
1963 2028 1.138464 TCAGCAGCCTCATCAAGCTAG 59.862 52.381 0.00 0.00 37.18 3.42
1964 2029 0.179051 AGCAGCCTCATCAAGCTAGC 60.179 55.000 6.62 6.62 37.18 3.42
1965 2030 0.179051 GCAGCCTCATCAAGCTAGCT 60.179 55.000 12.68 12.68 37.18 3.32
1966 2031 1.584175 CAGCCTCATCAAGCTAGCTG 58.416 55.000 20.16 12.65 41.43 4.24
1967 2032 0.469070 AGCCTCATCAAGCTAGCTGG 59.531 55.000 20.16 16.67 37.64 4.85
1968 2033 0.534652 GCCTCATCAAGCTAGCTGGG 60.535 60.000 20.16 14.11 0.00 4.45
1969 2034 0.835941 CCTCATCAAGCTAGCTGGGT 59.164 55.000 20.16 9.04 0.00 4.51
1970 2035 2.042464 CCTCATCAAGCTAGCTGGGTA 58.958 52.381 20.16 0.00 0.00 3.69
1971 2036 2.036992 CCTCATCAAGCTAGCTGGGTAG 59.963 54.545 20.16 12.86 0.00 3.18
1972 2037 2.697751 CTCATCAAGCTAGCTGGGTAGT 59.302 50.000 20.16 0.00 0.00 2.73
1973 2038 3.107601 TCATCAAGCTAGCTGGGTAGTT 58.892 45.455 20.16 0.00 0.00 2.24
1974 2039 4.286707 TCATCAAGCTAGCTGGGTAGTTA 58.713 43.478 20.16 0.00 0.00 2.24
1975 2040 4.714802 TCATCAAGCTAGCTGGGTAGTTAA 59.285 41.667 20.16 0.00 0.00 2.01
1976 2041 5.366768 TCATCAAGCTAGCTGGGTAGTTAAT 59.633 40.000 20.16 0.00 0.00 1.40
1977 2042 5.693769 TCAAGCTAGCTGGGTAGTTAATT 57.306 39.130 20.16 0.00 0.00 1.40
1978 2043 6.801718 TCAAGCTAGCTGGGTAGTTAATTA 57.198 37.500 20.16 0.00 0.00 1.40
1985 2050 6.163135 AGCTGGGTAGTTAATTAGCTAGTG 57.837 41.667 17.60 2.61 39.50 2.74
2037 2132 2.865551 GAGCTTAAGCAGACTGATGAGC 59.134 50.000 28.39 17.11 45.16 4.26
2038 2133 1.939255 GCTTAAGCAGACTGATGAGCC 59.061 52.381 22.59 2.26 41.59 4.70
2039 2134 2.419851 GCTTAAGCAGACTGATGAGCCT 60.420 50.000 22.59 0.00 41.59 4.58
2040 2135 2.975732 TAAGCAGACTGATGAGCCTG 57.024 50.000 6.65 0.00 0.00 4.85
2041 2136 1.273759 AAGCAGACTGATGAGCCTGA 58.726 50.000 6.65 0.00 0.00 3.86
2042 2137 0.536260 AGCAGACTGATGAGCCTGAC 59.464 55.000 6.65 0.00 0.00 3.51
2049 2162 2.902486 ACTGATGAGCCTGACAGAGAAA 59.098 45.455 3.32 0.00 34.88 2.52
2060 2173 6.150140 AGCCTGACAGAGAAACAATTAATCAC 59.850 38.462 3.32 0.00 0.00 3.06
2061 2174 6.072508 GCCTGACAGAGAAACAATTAATCACA 60.073 38.462 3.32 0.00 0.00 3.58
2062 2175 7.522073 GCCTGACAGAGAAACAATTAATCACAA 60.522 37.037 3.32 0.00 0.00 3.33
2063 2176 8.019669 CCTGACAGAGAAACAATTAATCACAAG 58.980 37.037 3.32 0.00 0.00 3.16
2065 2178 7.719193 TGACAGAGAAACAATTAATCACAAGGA 59.281 33.333 0.00 0.00 0.00 3.36
2067 2180 8.571336 ACAGAGAAACAATTAATCACAAGGAAG 58.429 33.333 0.00 0.00 0.00 3.46
2068 2181 8.025445 CAGAGAAACAATTAATCACAAGGAAGG 58.975 37.037 0.00 0.00 0.00 3.46
2069 2182 7.944554 AGAGAAACAATTAATCACAAGGAAGGA 59.055 33.333 0.00 0.00 0.00 3.36
2070 2183 8.115490 AGAAACAATTAATCACAAGGAAGGAG 57.885 34.615 0.00 0.00 0.00 3.69
2071 2184 6.840780 AACAATTAATCACAAGGAAGGAGG 57.159 37.500 0.00 0.00 0.00 4.30
2072 2185 5.892348 ACAATTAATCACAAGGAAGGAGGT 58.108 37.500 0.00 0.00 0.00 3.85
2073 2186 7.027874 ACAATTAATCACAAGGAAGGAGGTA 57.972 36.000 0.00 0.00 0.00 3.08
2074 2187 6.884836 ACAATTAATCACAAGGAAGGAGGTAC 59.115 38.462 0.00 0.00 0.00 3.34
2075 2188 6.636454 ATTAATCACAAGGAAGGAGGTACA 57.364 37.500 0.00 0.00 0.00 2.90
2076 2189 4.559862 AATCACAAGGAAGGAGGTACAG 57.440 45.455 0.00 0.00 0.00 2.74
2077 2190 1.623811 TCACAAGGAAGGAGGTACAGC 59.376 52.381 0.00 0.00 0.00 4.40
2102 2215 0.815095 CATGATGGAGCAGCAAAGCA 59.185 50.000 0.00 0.00 32.21 3.91
2136 2249 9.655769 CAATGATGGAGTTATCAAATTAAGTCG 57.344 33.333 0.00 0.00 40.21 4.18
2137 2250 7.786178 TGATGGAGTTATCAAATTAAGTCGG 57.214 36.000 0.00 0.00 34.32 4.79
2139 2252 7.710907 TGATGGAGTTATCAAATTAAGTCGGAG 59.289 37.037 0.00 0.00 34.32 4.63
2236 2352 7.736447 TTTTTGTTTTTGCTCCTTTTTGAGA 57.264 28.000 0.00 0.00 34.11 3.27
2237 2353 7.920160 TTTTGTTTTTGCTCCTTTTTGAGAT 57.080 28.000 0.00 0.00 34.11 2.75
2238 2354 9.442047 TTTTTGTTTTTGCTCCTTTTTGAGATA 57.558 25.926 0.00 0.00 34.11 1.98
2239 2355 9.442047 TTTTGTTTTTGCTCCTTTTTGAGATAA 57.558 25.926 0.00 0.00 34.11 1.75
2240 2356 9.442047 TTTGTTTTTGCTCCTTTTTGAGATAAA 57.558 25.926 0.00 0.00 34.11 1.40
2241 2357 8.647143 TGTTTTTGCTCCTTTTTGAGATAAAG 57.353 30.769 0.00 0.00 34.11 1.85
2242 2358 8.474025 TGTTTTTGCTCCTTTTTGAGATAAAGA 58.526 29.630 0.00 0.00 35.16 2.52
2243 2359 8.972349 GTTTTTGCTCCTTTTTGAGATAAAGAG 58.028 33.333 0.00 0.00 35.16 2.85
2244 2360 8.463930 TTTTGCTCCTTTTTGAGATAAAGAGA 57.536 30.769 0.00 0.00 35.16 3.10
2245 2361 8.641498 TTTGCTCCTTTTTGAGATAAAGAGAT 57.359 30.769 0.00 0.00 35.16 2.75
2246 2362 7.621428 TGCTCCTTTTTGAGATAAAGAGATG 57.379 36.000 0.00 0.00 35.16 2.90
2247 2363 6.600822 TGCTCCTTTTTGAGATAAAGAGATGG 59.399 38.462 0.00 0.00 35.16 3.51
2248 2364 6.601217 GCTCCTTTTTGAGATAAAGAGATGGT 59.399 38.462 0.00 0.00 35.16 3.55
2249 2365 7.121907 GCTCCTTTTTGAGATAAAGAGATGGTT 59.878 37.037 0.00 0.00 35.16 3.67
2250 2366 9.672673 CTCCTTTTTGAGATAAAGAGATGGTTA 57.327 33.333 0.00 0.00 35.16 2.85
2251 2367 9.449719 TCCTTTTTGAGATAAAGAGATGGTTAC 57.550 33.333 0.00 0.00 35.16 2.50
2252 2368 9.231297 CCTTTTTGAGATAAAGAGATGGTTACA 57.769 33.333 0.00 0.00 35.16 2.41
2255 2371 8.737168 TTTGAGATAAAGAGATGGTTACATGG 57.263 34.615 0.00 0.00 37.47 3.66
2256 2372 7.437713 TGAGATAAAGAGATGGTTACATGGT 57.562 36.000 0.00 0.00 37.47 3.55
2257 2373 7.861629 TGAGATAAAGAGATGGTTACATGGTT 58.138 34.615 0.00 0.00 37.47 3.67
2258 2374 7.770433 TGAGATAAAGAGATGGTTACATGGTTG 59.230 37.037 0.00 0.00 37.47 3.77
2259 2375 7.861629 AGATAAAGAGATGGTTACATGGTTGA 58.138 34.615 0.00 0.00 37.47 3.18
2260 2376 8.497745 AGATAAAGAGATGGTTACATGGTTGAT 58.502 33.333 0.00 0.00 37.47 2.57
2261 2377 9.125026 GATAAAGAGATGGTTACATGGTTGATT 57.875 33.333 0.00 0.00 37.47 2.57
2262 2378 7.781324 AAAGAGATGGTTACATGGTTGATTT 57.219 32.000 0.00 0.00 37.47 2.17
2263 2379 7.781324 AAGAGATGGTTACATGGTTGATTTT 57.219 32.000 0.00 0.00 37.47 1.82
2264 2380 7.781324 AGAGATGGTTACATGGTTGATTTTT 57.219 32.000 0.00 0.00 37.47 1.94
2296 2412 8.340618 TGTTCCTTTTTGAGATAAAGAGATGG 57.659 34.615 0.00 0.00 35.16 3.51
2308 2424 8.511604 AGATAAAGAGATGGTTACATGGTTTG 57.488 34.615 0.00 0.00 37.47 2.93
2311 2427 9.747898 ATAAAGAGATGGTTACATGGTTTGTTA 57.252 29.630 0.00 0.00 39.87 2.41
2312 2428 7.448748 AAGAGATGGTTACATGGTTTGTTAC 57.551 36.000 0.00 0.00 39.87 2.50
2313 2429 6.539173 AGAGATGGTTACATGGTTTGTTACA 58.461 36.000 0.00 0.00 39.15 2.41
2314 2430 7.001674 AGAGATGGTTACATGGTTTGTTACAA 58.998 34.615 0.00 0.00 39.15 2.41
2315 2431 6.977213 AGATGGTTACATGGTTTGTTACAAC 58.023 36.000 0.00 0.00 39.15 3.32
2316 2432 6.547880 AGATGGTTACATGGTTTGTTACAACA 59.452 34.615 0.00 0.00 39.15 3.33
2317 2433 6.137794 TGGTTACATGGTTTGTTACAACAG 57.862 37.500 0.00 0.00 39.15 3.16
2318 2434 5.067936 TGGTTACATGGTTTGTTACAACAGG 59.932 40.000 0.00 0.00 39.15 4.00
2319 2435 3.726291 ACATGGTTTGTTACAACAGGC 57.274 42.857 0.00 0.00 40.50 4.85
2320 2436 3.027412 ACATGGTTTGTTACAACAGGCA 58.973 40.909 0.00 0.00 40.50 4.75
2321 2437 3.640967 ACATGGTTTGTTACAACAGGCAT 59.359 39.130 0.00 0.00 40.50 4.40
2322 2438 4.830046 ACATGGTTTGTTACAACAGGCATA 59.170 37.500 0.00 0.00 40.50 3.14
2323 2439 5.303078 ACATGGTTTGTTACAACAGGCATAA 59.697 36.000 0.00 0.00 40.50 1.90
2324 2440 6.014669 ACATGGTTTGTTACAACAGGCATAAT 60.015 34.615 0.00 0.00 40.50 1.28
2325 2441 5.777802 TGGTTTGTTACAACAGGCATAATG 58.222 37.500 0.00 0.00 40.50 1.90
2326 2442 5.536538 TGGTTTGTTACAACAGGCATAATGA 59.463 36.000 0.00 0.00 40.50 2.57
2327 2443 5.861787 GGTTTGTTACAACAGGCATAATGAC 59.138 40.000 0.00 0.00 40.50 3.06
2328 2444 6.294508 GGTTTGTTACAACAGGCATAATGACT 60.295 38.462 0.00 0.00 34.86 3.41
2351 2467 5.366829 GGTAACAACGGTCTAGCAATTTT 57.633 39.130 0.00 0.00 0.00 1.82
2352 2468 5.765176 GGTAACAACGGTCTAGCAATTTTT 58.235 37.500 0.00 0.00 0.00 1.94
2369 2485 1.145819 TTTTTGCTGGCCCTGTTGC 59.854 52.632 0.00 0.00 0.00 4.17
2370 2486 1.620739 TTTTTGCTGGCCCTGTTGCA 61.621 50.000 0.00 0.00 0.00 4.08
2371 2487 2.308968 TTTTGCTGGCCCTGTTGCAC 62.309 55.000 0.00 0.00 35.01 4.57
2377 2493 3.223589 GCCCTGTTGCACCGGTTT 61.224 61.111 2.97 0.00 0.00 3.27
2378 2494 2.791868 GCCCTGTTGCACCGGTTTT 61.792 57.895 2.97 0.00 0.00 2.43
2379 2495 1.362355 CCCTGTTGCACCGGTTTTC 59.638 57.895 2.97 0.00 0.00 2.29
2380 2496 1.008995 CCTGTTGCACCGGTTTTCG 60.009 57.895 2.97 0.00 38.88 3.46
2381 2497 1.720694 CCTGTTGCACCGGTTTTCGT 61.721 55.000 2.97 0.00 37.11 3.85
2382 2498 0.316689 CTGTTGCACCGGTTTTCGTC 60.317 55.000 2.97 0.00 37.11 4.20
2383 2499 1.009335 GTTGCACCGGTTTTCGTCC 60.009 57.895 2.97 0.00 37.11 4.79
2384 2500 2.535788 TTGCACCGGTTTTCGTCCG 61.536 57.895 2.97 0.00 46.49 4.79
2385 2501 2.968697 GCACCGGTTTTCGTCCGT 60.969 61.111 2.97 0.00 45.63 4.69
2386 2502 2.536673 GCACCGGTTTTCGTCCGTT 61.537 57.895 2.97 0.00 45.63 4.44
2387 2503 2.016171 CACCGGTTTTCGTCCGTTT 58.984 52.632 2.97 0.00 45.63 3.60
2388 2504 0.377905 CACCGGTTTTCGTCCGTTTT 59.622 50.000 2.97 0.00 45.63 2.43
2389 2505 1.093972 ACCGGTTTTCGTCCGTTTTT 58.906 45.000 0.00 0.00 45.63 1.94
2390 2506 1.063912 ACCGGTTTTCGTCCGTTTTTC 59.936 47.619 0.00 0.00 45.63 2.29
2391 2507 1.331447 CCGGTTTTCGTCCGTTTTTCT 59.669 47.619 0.00 0.00 45.63 2.52
2392 2508 2.223317 CCGGTTTTCGTCCGTTTTTCTT 60.223 45.455 0.00 0.00 45.63 2.52
2393 2509 3.031126 CGGTTTTCGTCCGTTTTTCTTC 58.969 45.455 0.00 0.00 42.62 2.87
2394 2510 3.242511 CGGTTTTCGTCCGTTTTTCTTCT 60.243 43.478 0.00 0.00 42.62 2.85
2395 2511 4.025813 CGGTTTTCGTCCGTTTTTCTTCTA 60.026 41.667 0.00 0.00 42.62 2.10
2396 2512 5.200454 GGTTTTCGTCCGTTTTTCTTCTAC 58.800 41.667 0.00 0.00 0.00 2.59
2397 2513 5.007039 GGTTTTCGTCCGTTTTTCTTCTACT 59.993 40.000 0.00 0.00 0.00 2.57
2398 2514 6.200854 GGTTTTCGTCCGTTTTTCTTCTACTA 59.799 38.462 0.00 0.00 0.00 1.82
2399 2515 6.998258 TTTCGTCCGTTTTTCTTCTACTAG 57.002 37.500 0.00 0.00 0.00 2.57
2400 2516 4.479619 TCGTCCGTTTTTCTTCTACTAGC 58.520 43.478 0.00 0.00 0.00 3.42
2401 2517 4.022935 TCGTCCGTTTTTCTTCTACTAGCA 60.023 41.667 0.00 0.00 0.00 3.49
2402 2518 4.682860 CGTCCGTTTTTCTTCTACTAGCAA 59.317 41.667 0.00 0.00 0.00 3.91
2403 2519 5.176223 CGTCCGTTTTTCTTCTACTAGCAAA 59.824 40.000 0.00 0.00 0.00 3.68
2404 2520 6.292488 CGTCCGTTTTTCTTCTACTAGCAAAA 60.292 38.462 0.00 0.00 0.00 2.44
2405 2521 7.070183 GTCCGTTTTTCTTCTACTAGCAAAAG 58.930 38.462 0.00 0.00 0.00 2.27
2406 2522 6.204108 TCCGTTTTTCTTCTACTAGCAAAAGG 59.796 38.462 0.00 0.00 30.98 3.11
2407 2523 6.371389 CGTTTTTCTTCTACTAGCAAAAGGG 58.629 40.000 0.00 0.00 29.05 3.95
2408 2524 5.959618 TTTTCTTCTACTAGCAAAAGGGC 57.040 39.130 0.00 0.00 0.00 5.19
2409 2525 3.629142 TCTTCTACTAGCAAAAGGGCC 57.371 47.619 0.00 0.00 0.00 5.80
2410 2526 2.093658 TCTTCTACTAGCAAAAGGGCCG 60.094 50.000 0.00 0.00 0.00 6.13
2411 2527 1.272807 TCTACTAGCAAAAGGGCCGT 58.727 50.000 0.00 0.00 0.00 5.68
2412 2528 1.066430 TCTACTAGCAAAAGGGCCGTG 60.066 52.381 0.00 0.00 0.00 4.94
2413 2529 0.688487 TACTAGCAAAAGGGCCGTGT 59.312 50.000 0.00 0.00 0.00 4.49
2414 2530 0.889186 ACTAGCAAAAGGGCCGTGTG 60.889 55.000 5.13 5.13 0.00 3.82
2415 2531 0.889186 CTAGCAAAAGGGCCGTGTGT 60.889 55.000 11.43 1.31 0.00 3.72
2416 2532 0.466555 TAGCAAAAGGGCCGTGTGTT 60.467 50.000 11.43 7.85 0.00 3.32
2417 2533 1.591327 GCAAAAGGGCCGTGTGTTG 60.591 57.895 11.43 5.59 0.00 3.33
2418 2534 1.591327 CAAAAGGGCCGTGTGTTGC 60.591 57.895 0.00 0.00 0.00 4.17
2419 2535 2.055042 AAAAGGGCCGTGTGTTGCA 61.055 52.632 0.00 0.00 0.00 4.08
2420 2536 1.608717 AAAAGGGCCGTGTGTTGCAA 61.609 50.000 0.00 0.00 0.00 4.08
2421 2537 2.291457 AAAGGGCCGTGTGTTGCAAC 62.291 55.000 22.83 22.83 0.00 4.17
2422 2538 3.522731 GGGCCGTGTGTTGCAACA 61.523 61.111 27.96 27.96 36.38 3.33
2423 2539 2.026014 GGCCGTGTGTTGCAACAG 59.974 61.111 31.81 20.60 40.05 3.16
2424 2540 2.477176 GGCCGTGTGTTGCAACAGA 61.477 57.895 31.81 27.92 40.05 3.41
2425 2541 1.009675 GCCGTGTGTTGCAACAGAG 60.010 57.895 31.81 23.25 40.05 3.35
2426 2542 1.648720 CCGTGTGTTGCAACAGAGG 59.351 57.895 31.37 31.37 40.05 3.69
2427 2543 0.813610 CCGTGTGTTGCAACAGAGGA 60.814 55.000 36.60 19.42 39.52 3.71
2428 2544 1.013596 CGTGTGTTGCAACAGAGGAA 58.986 50.000 33.53 16.23 39.52 3.36
2429 2545 1.400142 CGTGTGTTGCAACAGAGGAAA 59.600 47.619 33.53 14.72 39.52 3.13
2430 2546 2.159448 CGTGTGTTGCAACAGAGGAAAA 60.159 45.455 33.53 10.29 39.52 2.29
2431 2547 3.671971 CGTGTGTTGCAACAGAGGAAAAA 60.672 43.478 33.53 9.60 39.52 1.94
2452 2568 7.698836 AAAAATAATCATAATCTGCAACGGC 57.301 32.000 0.00 0.00 41.68 5.68
2453 2569 5.376854 AATAATCATAATCTGCAACGGCC 57.623 39.130 0.00 0.00 40.13 6.13
2454 2570 2.346766 ATCATAATCTGCAACGGCCA 57.653 45.000 2.24 0.00 40.13 5.36
2455 2571 2.346766 TCATAATCTGCAACGGCCAT 57.653 45.000 2.24 0.00 40.13 4.40
2456 2572 1.948834 TCATAATCTGCAACGGCCATG 59.051 47.619 2.24 1.58 40.13 3.66
2457 2573 1.948834 CATAATCTGCAACGGCCATGA 59.051 47.619 2.24 0.00 40.13 3.07
2458 2574 2.346766 TAATCTGCAACGGCCATGAT 57.653 45.000 2.24 0.00 40.13 2.45
2459 2575 1.027357 AATCTGCAACGGCCATGATC 58.973 50.000 2.24 0.00 40.13 2.92
2460 2576 0.107066 ATCTGCAACGGCCATGATCA 60.107 50.000 2.24 0.00 40.13 2.92
2461 2577 1.026182 TCTGCAACGGCCATGATCAC 61.026 55.000 2.24 0.00 40.13 3.06
2462 2578 1.303155 TGCAACGGCCATGATCACA 60.303 52.632 2.24 0.00 40.13 3.58
2463 2579 0.680601 TGCAACGGCCATGATCACAT 60.681 50.000 2.24 0.00 40.13 3.21
2464 2580 0.457035 GCAACGGCCATGATCACATT 59.543 50.000 2.24 0.00 34.15 2.71
2465 2581 1.135024 GCAACGGCCATGATCACATTT 60.135 47.619 2.24 0.00 34.15 2.32
2466 2582 2.674747 GCAACGGCCATGATCACATTTT 60.675 45.455 2.24 0.00 34.15 1.82
2467 2583 2.924926 CAACGGCCATGATCACATTTTG 59.075 45.455 2.24 0.00 34.15 2.44
2468 2584 1.135024 ACGGCCATGATCACATTTTGC 60.135 47.619 2.24 0.00 34.15 3.68
2469 2585 1.135527 CGGCCATGATCACATTTTGCT 59.864 47.619 2.24 0.00 34.15 3.91
2470 2586 2.546778 GGCCATGATCACATTTTGCTG 58.453 47.619 0.00 0.00 34.15 4.41
2471 2587 1.931172 GCCATGATCACATTTTGCTGC 59.069 47.619 0.00 0.00 34.15 5.25
2472 2588 2.675603 GCCATGATCACATTTTGCTGCA 60.676 45.455 0.00 0.00 34.15 4.41
2473 2589 3.792401 CCATGATCACATTTTGCTGCAT 58.208 40.909 1.84 0.00 34.15 3.96
2474 2590 3.802139 CCATGATCACATTTTGCTGCATC 59.198 43.478 1.84 0.00 34.15 3.91
2475 2591 4.429108 CATGATCACATTTTGCTGCATCA 58.571 39.130 1.84 1.56 34.15 3.07
2476 2592 3.840468 TGATCACATTTTGCTGCATCAC 58.160 40.909 1.84 0.00 0.00 3.06
2477 2593 2.728690 TCACATTTTGCTGCATCACC 57.271 45.000 1.84 0.00 0.00 4.02
2478 2594 1.068402 TCACATTTTGCTGCATCACCG 60.068 47.619 1.84 0.00 0.00 4.94
2479 2595 1.068402 CACATTTTGCTGCATCACCGA 60.068 47.619 1.84 0.00 0.00 4.69
2480 2596 1.200716 ACATTTTGCTGCATCACCGAG 59.799 47.619 1.84 0.00 0.00 4.63
2481 2597 1.469703 CATTTTGCTGCATCACCGAGA 59.530 47.619 1.84 0.00 0.00 4.04
2482 2598 1.825090 TTTTGCTGCATCACCGAGAT 58.175 45.000 1.84 0.00 37.48 2.75
2483 2599 2.689553 TTTGCTGCATCACCGAGATA 57.310 45.000 1.84 0.00 34.43 1.98
2484 2600 2.916702 TTGCTGCATCACCGAGATAT 57.083 45.000 1.84 0.00 34.43 1.63
2485 2601 4.335400 TTTGCTGCATCACCGAGATATA 57.665 40.909 1.84 0.00 34.43 0.86
2486 2602 4.541973 TTGCTGCATCACCGAGATATAT 57.458 40.909 1.84 0.00 34.43 0.86
2487 2603 4.541973 TGCTGCATCACCGAGATATATT 57.458 40.909 0.00 0.00 34.43 1.28
2488 2604 5.659440 TGCTGCATCACCGAGATATATTA 57.341 39.130 0.00 0.00 34.43 0.98
2489 2605 6.225981 TGCTGCATCACCGAGATATATTAT 57.774 37.500 0.00 0.00 34.43 1.28
2490 2606 6.276091 TGCTGCATCACCGAGATATATTATC 58.724 40.000 0.00 0.00 34.43 1.75
2491 2607 6.127366 TGCTGCATCACCGAGATATATTATCA 60.127 38.462 0.00 0.00 34.43 2.15
2492 2608 6.758416 GCTGCATCACCGAGATATATTATCAA 59.242 38.462 0.00 0.00 34.43 2.57
2493 2609 7.278646 GCTGCATCACCGAGATATATTATCAAA 59.721 37.037 0.00 0.00 34.43 2.69
2494 2610 9.154847 CTGCATCACCGAGATATATTATCAAAA 57.845 33.333 0.00 0.00 34.43 2.44
2495 2611 9.671279 TGCATCACCGAGATATATTATCAAAAT 57.329 29.630 0.00 0.00 34.43 1.82
2551 2667 9.559958 AAACTCGTGCAGATATTAGAAATTTTG 57.440 29.630 0.00 0.00 0.00 2.44
2552 2668 8.492673 ACTCGTGCAGATATTAGAAATTTTGA 57.507 30.769 0.00 0.00 0.00 2.69
2553 2669 8.946085 ACTCGTGCAGATATTAGAAATTTTGAA 58.054 29.630 0.00 0.00 0.00 2.69
2554 2670 9.214953 CTCGTGCAGATATTAGAAATTTTGAAC 57.785 33.333 0.00 0.00 0.00 3.18
2555 2671 8.726068 TCGTGCAGATATTAGAAATTTTGAACA 58.274 29.630 0.00 0.00 0.00 3.18
2556 2672 9.340695 CGTGCAGATATTAGAAATTTTGAACAA 57.659 29.630 0.00 0.00 0.00 2.83
2809 2925 3.568093 AAAAACATGCAGCACGGAC 57.432 47.368 0.00 0.00 0.00 4.79
2810 2926 0.743688 AAAAACATGCAGCACGGACA 59.256 45.000 0.00 0.00 0.00 4.02
2811 2927 0.961019 AAAACATGCAGCACGGACAT 59.039 45.000 0.00 0.00 0.00 3.06
2812 2928 0.241749 AAACATGCAGCACGGACATG 59.758 50.000 0.00 0.00 45.28 3.21
2813 2929 1.588824 AACATGCAGCACGGACATGG 61.589 55.000 0.00 0.00 44.32 3.66
2814 2930 2.438975 ATGCAGCACGGACATGGG 60.439 61.111 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.185454 TGATGTGGAGGTTACATTTGCTAG 58.815 41.667 0.00 0.00 38.78 3.42
4 5 4.032960 TGATGTGGAGGTTACATTTGCT 57.967 40.909 0.00 0.00 38.78 3.91
6 7 7.050377 ACTAGATGATGTGGAGGTTACATTTG 58.950 38.462 0.00 0.00 38.78 2.32
7 8 7.200434 ACTAGATGATGTGGAGGTTACATTT 57.800 36.000 0.00 0.00 38.78 2.32
8 9 6.814954 ACTAGATGATGTGGAGGTTACATT 57.185 37.500 0.00 0.00 38.78 2.71
9 10 6.814954 AACTAGATGATGTGGAGGTTACAT 57.185 37.500 0.00 0.00 41.21 2.29
10 11 6.895756 ACTAACTAGATGATGTGGAGGTTACA 59.104 38.462 0.00 0.00 0.00 2.41
11 12 7.068348 TCACTAACTAGATGATGTGGAGGTTAC 59.932 40.741 0.00 0.00 0.00 2.50
12 13 7.123383 TCACTAACTAGATGATGTGGAGGTTA 58.877 38.462 0.00 0.00 0.00 2.85
13 14 5.958380 TCACTAACTAGATGATGTGGAGGTT 59.042 40.000 0.00 0.00 0.00 3.50
14 15 5.519808 TCACTAACTAGATGATGTGGAGGT 58.480 41.667 0.00 0.00 0.00 3.85
79 80 5.490159 AGTGTAGTCTGTAGTGTAGGAGAC 58.510 45.833 0.00 0.00 35.97 3.36
118 127 4.280436 TGTTGGGGTTGTATACTGACAG 57.720 45.455 4.17 0.00 0.00 3.51
194 216 3.084039 AGTGTGTTCCCTGCATACATTG 58.916 45.455 0.00 0.00 31.66 2.82
206 228 2.561478 TTAGCCTGGAAGTGTGTTCC 57.439 50.000 0.00 0.00 39.03 3.62
234 256 5.009911 TGAGAAAGATTAAGCAGCAAAGCAA 59.990 36.000 0.00 0.00 36.85 3.91
235 257 4.520111 TGAGAAAGATTAAGCAGCAAAGCA 59.480 37.500 0.00 0.00 36.85 3.91
236 258 5.051891 TGAGAAAGATTAAGCAGCAAAGC 57.948 39.130 0.00 0.00 0.00 3.51
237 259 8.530269 AAAATGAGAAAGATTAAGCAGCAAAG 57.470 30.769 0.00 0.00 0.00 2.77
238 260 9.630098 CTAAAATGAGAAAGATTAAGCAGCAAA 57.370 29.630 0.00 0.00 0.00 3.68
239 261 7.756722 GCTAAAATGAGAAAGATTAAGCAGCAA 59.243 33.333 0.00 0.00 0.00 3.91
240 262 7.121759 AGCTAAAATGAGAAAGATTAAGCAGCA 59.878 33.333 0.00 0.00 30.06 4.41
241 263 7.479150 AGCTAAAATGAGAAAGATTAAGCAGC 58.521 34.615 0.00 0.00 30.06 5.25
242 264 8.671921 TGAGCTAAAATGAGAAAGATTAAGCAG 58.328 33.333 0.00 0.00 30.06 4.24
307 341 5.163884 GGTTGTTTAAGCGTGAGGATTAGAC 60.164 44.000 0.00 0.00 33.56 2.59
330 364 2.409975 CCAACTTGCTTGCTTGATTGG 58.590 47.619 0.00 0.00 0.00 3.16
385 419 1.120437 GAAAAAGTTGAACGCCGCTG 58.880 50.000 0.00 0.00 0.00 5.18
391 425 3.239712 GGTCAAAGCGAAAAAGTTGAACG 59.760 43.478 0.00 0.00 32.12 3.95
442 476 3.130819 TGGCCATAACCAAGCGCG 61.131 61.111 0.00 0.00 36.55 6.86
455 489 0.811281 GCATGTTCTGGTTAGTGGCC 59.189 55.000 0.00 0.00 0.00 5.36
679 713 2.835701 TTCCGCACCAGACGATCAGC 62.836 60.000 0.00 0.00 0.00 4.26
696 730 2.603560 GTGGATCTTGGTCGTCGATTTC 59.396 50.000 0.00 0.00 0.00 2.17
732 776 1.450312 CGCTTCCCACCACAGATCC 60.450 63.158 0.00 0.00 0.00 3.36
776 820 6.567321 GCCAGGATCGAACATCATAAATGAAG 60.567 42.308 0.00 0.00 40.69 3.02
815 859 1.534729 GAAAGAATTGGCCGTCCTGT 58.465 50.000 0.00 0.00 0.00 4.00
826 870 4.094830 ACCGTACCAAGTGGAAAGAATT 57.905 40.909 3.83 0.00 38.94 2.17
836 880 1.269958 GGTTCCCTACCGTACCAAGT 58.730 55.000 0.00 0.00 37.12 3.16
887 937 6.459923 CAAATAGCTTACTCCCCTGTATCTC 58.540 44.000 0.00 0.00 0.00 2.75
930 980 5.016051 TGGTGAGATGTCTGAAGCTAATC 57.984 43.478 0.00 0.00 0.00 1.75
950 1000 8.915057 AAAGAAAGATGATATATGTCACCTGG 57.085 34.615 4.06 0.00 0.00 4.45
978 1028 3.551635 ACTTCTCCTTCCTCCTCAGAA 57.448 47.619 0.00 0.00 0.00 3.02
979 1029 4.676799 TTACTTCTCCTTCCTCCTCAGA 57.323 45.455 0.00 0.00 0.00 3.27
980 1030 4.100808 CCATTACTTCTCCTTCCTCCTCAG 59.899 50.000 0.00 0.00 0.00 3.35
981 1031 4.033709 CCATTACTTCTCCTTCCTCCTCA 58.966 47.826 0.00 0.00 0.00 3.86
997 1047 1.473258 TCAGCAATGTGCCCCATTAC 58.527 50.000 0.00 0.00 46.52 1.89
1083 1133 2.509336 ATCTTCTTCACCGCGCCG 60.509 61.111 0.00 0.00 0.00 6.46
1222 1272 8.883954 AACTAAAGAAACCAAGTACTAGTGAC 57.116 34.615 5.39 0.06 0.00 3.67
1249 1299 1.002366 GCTCTTGCGACGATCAACAT 58.998 50.000 0.00 0.00 0.00 2.71
1252 1302 0.319469 TGTGCTCTTGCGACGATCAA 60.319 50.000 0.00 0.00 43.34 2.57
1280 1330 2.347697 TCTGGATCGACACAACTTCG 57.652 50.000 0.00 0.00 37.85 3.79
1305 1355 9.995003 AGAAGATCCATCAGATTATAACAAGTC 57.005 33.333 0.00 0.00 34.42 3.01
1380 1433 0.676466 TTTGATACCGGTGCTGCAGG 60.676 55.000 19.93 4.18 38.47 4.85
1567 1626 2.344741 GCGTTGTAGCTGTAGTTGTAGC 59.655 50.000 0.00 0.00 40.18 3.58
1692 1751 7.726216 TCCTGTTAACATATCATACACAGAGG 58.274 38.462 9.13 1.71 33.44 3.69
1693 1752 9.416794 GATCCTGTTAACATATCATACACAGAG 57.583 37.037 19.03 1.92 33.44 3.35
1699 1761 6.090898 GCACGGATCCTGTTAACATATCATAC 59.909 42.308 22.66 9.48 0.00 2.39
1708 1773 0.719465 CACGCACGGATCCTGTTAAC 59.281 55.000 10.75 0.00 0.00 2.01
1710 1775 0.821517 ATCACGCACGGATCCTGTTA 59.178 50.000 10.75 0.00 0.00 2.41
1711 1776 0.036388 AATCACGCACGGATCCTGTT 60.036 50.000 10.75 0.00 0.00 3.16
1712 1777 0.821517 TAATCACGCACGGATCCTGT 59.178 50.000 10.75 6.80 0.00 4.00
1713 1778 1.067060 TCTAATCACGCACGGATCCTG 59.933 52.381 10.75 8.41 0.00 3.86
1715 1780 1.337071 TCTCTAATCACGCACGGATCC 59.663 52.381 0.00 0.00 0.00 3.36
1716 1781 2.223502 TGTCTCTAATCACGCACGGATC 60.224 50.000 0.00 0.00 0.00 3.36
1717 1782 1.749063 TGTCTCTAATCACGCACGGAT 59.251 47.619 0.00 0.00 0.00 4.18
1718 1783 1.135489 GTGTCTCTAATCACGCACGGA 60.135 52.381 0.00 0.00 0.00 4.69
1719 1784 1.135373 AGTGTCTCTAATCACGCACGG 60.135 52.381 0.00 0.00 39.25 4.94
1720 1785 2.264109 AGTGTCTCTAATCACGCACG 57.736 50.000 0.00 0.00 39.25 5.34
1741 1806 0.462375 TACCACGCTAATGCACGGAT 59.538 50.000 0.00 0.00 39.64 4.18
1760 1825 3.560503 CAAACACGCCGTGTCAATAATT 58.439 40.909 24.59 10.16 46.79 1.40
1762 1827 1.264557 CCAAACACGCCGTGTCAATAA 59.735 47.619 24.59 0.00 46.79 1.40
1764 1829 1.098712 ACCAAACACGCCGTGTCAAT 61.099 50.000 24.59 10.31 46.79 2.57
1765 1830 1.306642 AACCAAACACGCCGTGTCAA 61.307 50.000 24.59 0.00 46.79 3.18
1766 1831 1.745864 AACCAAACACGCCGTGTCA 60.746 52.632 24.59 0.00 46.79 3.58
1767 1832 1.298041 CAACCAAACACGCCGTGTC 60.298 57.895 24.59 0.00 46.79 3.67
1769 1834 2.025441 CCAACCAAACACGCCGTG 59.975 61.111 16.94 16.94 39.75 4.94
1770 1835 0.747283 TAACCAACCAAACACGCCGT 60.747 50.000 0.00 0.00 0.00 5.68
1771 1836 0.381089 TTAACCAACCAAACACGCCG 59.619 50.000 0.00 0.00 0.00 6.46
1772 1837 2.804697 ATTAACCAACCAAACACGCC 57.195 45.000 0.00 0.00 0.00 5.68
1853 1918 3.355957 ATCCCCCTGCTGCTGCTTC 62.356 63.158 17.00 0.00 40.48 3.86
1854 1919 3.345028 ATCCCCCTGCTGCTGCTT 61.345 61.111 17.00 0.00 40.48 3.91
1855 1920 4.124943 CATCCCCCTGCTGCTGCT 62.125 66.667 17.00 0.00 40.48 4.24
1856 1921 3.951769 AACATCCCCCTGCTGCTGC 62.952 63.158 8.89 8.89 40.20 5.25
1863 1928 0.835941 CTCCTCTCAACATCCCCCTG 59.164 60.000 0.00 0.00 0.00 4.45
1867 1932 2.303022 TGTTGTCTCCTCTCAACATCCC 59.697 50.000 6.63 0.00 45.50 3.85
1887 1952 3.438087 AGTCATCGCCAGTTTCTCAAATG 59.562 43.478 0.00 0.00 0.00 2.32
1902 1967 1.392853 GCTCTTGTTGCTGAGTCATCG 59.607 52.381 0.00 0.00 33.22 3.84
1912 1977 1.081376 CTGCTGCTGCTCTTGTTGC 60.081 57.895 17.00 0.00 40.48 4.17
1916 1981 2.750637 CCCCTGCTGCTGCTCTTG 60.751 66.667 17.00 4.62 40.48 3.02
1917 1982 4.044439 CCCCCTGCTGCTGCTCTT 62.044 66.667 17.00 0.00 40.48 2.85
1931 1996 3.746949 CTGCTGAGTCATCGCCCCC 62.747 68.421 0.00 0.00 0.00 5.40
1932 1997 2.202987 CTGCTGAGTCATCGCCCC 60.203 66.667 0.00 0.00 0.00 5.80
1933 1998 2.894387 GCTGCTGAGTCATCGCCC 60.894 66.667 0.00 0.00 0.00 6.13
1934 1999 2.894387 GGCTGCTGAGTCATCGCC 60.894 66.667 11.96 11.96 0.00 5.54
1935 2000 1.882167 GAGGCTGCTGAGTCATCGC 60.882 63.158 0.00 0.00 0.00 4.58
1936 2001 0.104487 ATGAGGCTGCTGAGTCATCG 59.896 55.000 0.00 0.00 0.00 3.84
1937 2002 1.138464 TGATGAGGCTGCTGAGTCATC 59.862 52.381 19.95 19.95 43.75 2.92
1938 2003 1.201424 TGATGAGGCTGCTGAGTCAT 58.799 50.000 0.00 7.54 32.24 3.06
1939 2004 0.978907 TTGATGAGGCTGCTGAGTCA 59.021 50.000 0.00 0.00 0.00 3.41
1940 2005 1.654317 CTTGATGAGGCTGCTGAGTC 58.346 55.000 0.00 0.00 0.00 3.36
1941 2006 0.392729 GCTTGATGAGGCTGCTGAGT 60.393 55.000 0.00 0.00 0.00 3.41
1942 2007 0.107606 AGCTTGATGAGGCTGCTGAG 60.108 55.000 0.00 0.00 37.41 3.35
1943 2008 1.138464 CTAGCTTGATGAGGCTGCTGA 59.862 52.381 0.00 0.00 39.31 4.26
1944 2009 1.584175 CTAGCTTGATGAGGCTGCTG 58.416 55.000 0.00 0.00 39.31 4.41
1945 2010 0.179051 GCTAGCTTGATGAGGCTGCT 60.179 55.000 7.70 0.00 39.31 4.24
1946 2011 0.179051 AGCTAGCTTGATGAGGCTGC 60.179 55.000 12.68 1.08 39.31 5.25
1947 2012 1.584175 CAGCTAGCTTGATGAGGCTG 58.416 55.000 16.46 5.61 40.52 4.85
1948 2013 0.469070 CCAGCTAGCTTGATGAGGCT 59.531 55.000 16.46 0.00 41.92 4.58
1949 2014 0.534652 CCCAGCTAGCTTGATGAGGC 60.535 60.000 16.46 0.00 0.00 4.70
1950 2015 0.835941 ACCCAGCTAGCTTGATGAGG 59.164 55.000 16.46 12.09 0.00 3.86
1951 2016 2.697751 ACTACCCAGCTAGCTTGATGAG 59.302 50.000 16.46 11.27 0.00 2.90
1952 2017 2.752030 ACTACCCAGCTAGCTTGATGA 58.248 47.619 16.46 0.00 0.00 2.92
1953 2018 3.550437 AACTACCCAGCTAGCTTGATG 57.450 47.619 16.46 6.43 0.00 3.07
1954 2019 5.896073 ATTAACTACCCAGCTAGCTTGAT 57.104 39.130 16.46 0.00 0.00 2.57
1955 2020 5.693769 AATTAACTACCCAGCTAGCTTGA 57.306 39.130 16.46 0.00 0.00 3.02
1956 2021 5.467063 GCTAATTAACTACCCAGCTAGCTTG 59.533 44.000 16.46 12.24 0.00 4.01
1957 2022 5.367060 AGCTAATTAACTACCCAGCTAGCTT 59.633 40.000 16.46 3.11 38.07 3.74
1958 2023 4.902448 AGCTAATTAACTACCCAGCTAGCT 59.098 41.667 12.68 12.68 37.58 3.32
1959 2024 5.216614 AGCTAATTAACTACCCAGCTAGC 57.783 43.478 6.62 6.62 37.58 3.42
1961 2026 6.837568 ACACTAGCTAATTAACTACCCAGCTA 59.162 38.462 0.00 0.00 39.84 3.32
1962 2027 5.661759 ACACTAGCTAATTAACTACCCAGCT 59.338 40.000 0.00 0.00 41.87 4.24
1963 2028 5.915175 ACACTAGCTAATTAACTACCCAGC 58.085 41.667 0.00 0.00 0.00 4.85
1964 2029 7.328737 ACAACACTAGCTAATTAACTACCCAG 58.671 38.462 0.00 0.00 0.00 4.45
1965 2030 7.248743 ACAACACTAGCTAATTAACTACCCA 57.751 36.000 0.00 0.00 0.00 4.51
1966 2031 9.657419 TTAACAACACTAGCTAATTAACTACCC 57.343 33.333 0.00 0.00 0.00 3.69
2004 2069 2.037144 CTTAAGCTCCCGCCCTAACTA 58.963 52.381 0.00 0.00 36.60 2.24
2013 2078 0.532573 TCAGTCTGCTTAAGCTCCCG 59.467 55.000 26.90 13.23 42.66 5.14
2021 2086 2.975732 CAGGCTCATCAGTCTGCTTA 57.024 50.000 0.00 0.00 45.37 3.09
2037 2132 7.439157 TGTGATTAATTGTTTCTCTGTCAGG 57.561 36.000 0.00 0.00 0.00 3.86
2038 2133 8.019669 CCTTGTGATTAATTGTTTCTCTGTCAG 58.980 37.037 0.00 0.00 0.00 3.51
2039 2134 7.719193 TCCTTGTGATTAATTGTTTCTCTGTCA 59.281 33.333 0.00 0.00 0.00 3.58
2040 2135 8.099364 TCCTTGTGATTAATTGTTTCTCTGTC 57.901 34.615 0.00 0.00 0.00 3.51
2041 2136 8.463930 TTCCTTGTGATTAATTGTTTCTCTGT 57.536 30.769 0.00 0.00 0.00 3.41
2042 2137 8.025445 CCTTCCTTGTGATTAATTGTTTCTCTG 58.975 37.037 0.00 0.00 0.00 3.35
2049 2162 5.892348 ACCTCCTTCCTTGTGATTAATTGT 58.108 37.500 0.00 0.00 0.00 2.71
2060 2173 1.902508 TCAGCTGTACCTCCTTCCTTG 59.097 52.381 14.67 0.00 0.00 3.61
2061 2174 2.327325 TCAGCTGTACCTCCTTCCTT 57.673 50.000 14.67 0.00 0.00 3.36
2062 2175 2.114616 CATCAGCTGTACCTCCTTCCT 58.885 52.381 14.67 0.00 0.00 3.36
2063 2176 1.474143 GCATCAGCTGTACCTCCTTCC 60.474 57.143 14.67 0.00 37.91 3.46
2065 2178 1.279496 TGCATCAGCTGTACCTCCTT 58.721 50.000 14.67 0.00 42.74 3.36
2067 2180 1.139654 TCATGCATCAGCTGTACCTCC 59.860 52.381 14.67 0.00 42.74 4.30
2068 2181 2.609427 TCATGCATCAGCTGTACCTC 57.391 50.000 14.67 0.72 42.74 3.85
2069 2182 2.486727 CCATCATGCATCAGCTGTACCT 60.487 50.000 14.67 0.00 42.74 3.08
2070 2183 1.878088 CCATCATGCATCAGCTGTACC 59.122 52.381 14.67 3.53 42.74 3.34
2071 2184 2.806818 CTCCATCATGCATCAGCTGTAC 59.193 50.000 14.67 5.03 42.74 2.90
2072 2185 2.809299 GCTCCATCATGCATCAGCTGTA 60.809 50.000 14.67 0.48 42.74 2.74
2073 2186 1.968704 CTCCATCATGCATCAGCTGT 58.031 50.000 14.67 0.00 42.74 4.40
2074 2187 0.593618 GCTCCATCATGCATCAGCTG 59.406 55.000 7.63 7.63 42.74 4.24
2075 2188 0.182775 TGCTCCATCATGCATCAGCT 59.817 50.000 0.00 0.00 42.74 4.24
2076 2189 0.593618 CTGCTCCATCATGCATCAGC 59.406 55.000 0.00 0.08 38.59 4.26
2077 2190 0.593618 GCTGCTCCATCATGCATCAG 59.406 55.000 0.00 0.00 38.59 2.90
2102 2215 5.419788 TGATAACTCCATCATTGCTTGCTTT 59.580 36.000 0.00 0.00 29.93 3.51
2182 2295 7.061027 CGTAACGCATGTACACCTTATTTATG 58.939 38.462 0.00 0.00 0.00 1.90
2218 2334 8.912988 TCTCTTTATCTCAAAAAGGAGCAAAAA 58.087 29.630 0.00 0.00 35.18 1.94
2219 2335 8.463930 TCTCTTTATCTCAAAAAGGAGCAAAA 57.536 30.769 0.00 0.00 35.18 2.44
2220 2336 8.517878 CATCTCTTTATCTCAAAAAGGAGCAAA 58.482 33.333 0.00 0.00 35.18 3.68
2221 2337 7.121759 CCATCTCTTTATCTCAAAAAGGAGCAA 59.878 37.037 0.00 0.00 35.18 3.91
2222 2338 6.600822 CCATCTCTTTATCTCAAAAAGGAGCA 59.399 38.462 0.00 0.00 35.18 4.26
2223 2339 6.601217 ACCATCTCTTTATCTCAAAAAGGAGC 59.399 38.462 0.00 0.00 35.18 4.70
2224 2340 8.572855 AACCATCTCTTTATCTCAAAAAGGAG 57.427 34.615 0.00 0.00 35.18 3.69
2225 2341 9.449719 GTAACCATCTCTTTATCTCAAAAAGGA 57.550 33.333 0.00 0.00 35.18 3.36
2226 2342 9.231297 TGTAACCATCTCTTTATCTCAAAAAGG 57.769 33.333 0.00 0.00 35.18 3.11
2229 2345 9.177608 CCATGTAACCATCTCTTTATCTCAAAA 57.822 33.333 0.00 0.00 0.00 2.44
2230 2346 8.328758 ACCATGTAACCATCTCTTTATCTCAAA 58.671 33.333 0.00 0.00 0.00 2.69
2231 2347 7.861629 ACCATGTAACCATCTCTTTATCTCAA 58.138 34.615 0.00 0.00 0.00 3.02
2232 2348 7.437713 ACCATGTAACCATCTCTTTATCTCA 57.562 36.000 0.00 0.00 0.00 3.27
2233 2349 7.987458 TCAACCATGTAACCATCTCTTTATCTC 59.013 37.037 0.00 0.00 0.00 2.75
2234 2350 7.861629 TCAACCATGTAACCATCTCTTTATCT 58.138 34.615 0.00 0.00 0.00 1.98
2235 2351 8.682936 ATCAACCATGTAACCATCTCTTTATC 57.317 34.615 0.00 0.00 0.00 1.75
2236 2352 9.479549 AAATCAACCATGTAACCATCTCTTTAT 57.520 29.630 0.00 0.00 0.00 1.40
2237 2353 8.877864 AAATCAACCATGTAACCATCTCTTTA 57.122 30.769 0.00 0.00 0.00 1.85
2238 2354 7.781324 AAATCAACCATGTAACCATCTCTTT 57.219 32.000 0.00 0.00 0.00 2.52
2239 2355 7.781324 AAAATCAACCATGTAACCATCTCTT 57.219 32.000 0.00 0.00 0.00 2.85
2240 2356 7.781324 AAAAATCAACCATGTAACCATCTCT 57.219 32.000 0.00 0.00 0.00 3.10
2296 2412 4.979815 GCCTGTTGTAACAAACCATGTAAC 59.020 41.667 0.00 0.00 42.99 2.50
2308 2424 4.700213 ACCAGTCATTATGCCTGTTGTAAC 59.300 41.667 2.56 0.00 0.00 2.50
2311 2427 3.439857 ACCAGTCATTATGCCTGTTGT 57.560 42.857 2.56 0.00 0.00 3.32
2312 2428 4.699735 TGTTACCAGTCATTATGCCTGTTG 59.300 41.667 2.56 0.00 0.00 3.33
2313 2429 4.917385 TGTTACCAGTCATTATGCCTGTT 58.083 39.130 2.56 0.00 0.00 3.16
2314 2430 4.568072 TGTTACCAGTCATTATGCCTGT 57.432 40.909 2.56 0.00 0.00 4.00
2315 2431 4.201812 CGTTGTTACCAGTCATTATGCCTG 60.202 45.833 0.00 0.00 0.00 4.85
2316 2432 3.938963 CGTTGTTACCAGTCATTATGCCT 59.061 43.478 0.00 0.00 0.00 4.75
2317 2433 3.064820 CCGTTGTTACCAGTCATTATGCC 59.935 47.826 0.00 0.00 0.00 4.40
2318 2434 3.687698 ACCGTTGTTACCAGTCATTATGC 59.312 43.478 0.00 0.00 0.00 3.14
2319 2435 5.175859 AGACCGTTGTTACCAGTCATTATG 58.824 41.667 0.00 0.00 30.30 1.90
2320 2436 5.416271 AGACCGTTGTTACCAGTCATTAT 57.584 39.130 0.00 0.00 30.30 1.28
2321 2437 4.877378 AGACCGTTGTTACCAGTCATTA 57.123 40.909 0.00 0.00 30.30 1.90
2322 2438 3.764237 AGACCGTTGTTACCAGTCATT 57.236 42.857 0.00 0.00 30.30 2.57
2323 2439 3.368116 GCTAGACCGTTGTTACCAGTCAT 60.368 47.826 0.00 0.00 30.30 3.06
2324 2440 2.029649 GCTAGACCGTTGTTACCAGTCA 60.030 50.000 0.00 0.00 30.30 3.41
2325 2441 2.029649 TGCTAGACCGTTGTTACCAGTC 60.030 50.000 0.00 0.00 0.00 3.51
2326 2442 1.965643 TGCTAGACCGTTGTTACCAGT 59.034 47.619 0.00 0.00 0.00 4.00
2327 2443 2.736144 TGCTAGACCGTTGTTACCAG 57.264 50.000 0.00 0.00 0.00 4.00
2328 2444 3.688694 ATTGCTAGACCGTTGTTACCA 57.311 42.857 0.00 0.00 0.00 3.25
2329 2445 5.366829 AAAATTGCTAGACCGTTGTTACC 57.633 39.130 0.00 0.00 0.00 2.85
2351 2467 1.145819 GCAACAGGGCCAGCAAAAA 59.854 52.632 6.18 0.00 0.00 1.94
2352 2468 2.062777 TGCAACAGGGCCAGCAAAA 61.063 52.632 6.18 0.00 33.48 2.44
2353 2469 2.443577 TGCAACAGGGCCAGCAAA 60.444 55.556 6.18 0.00 33.48 3.68
2354 2470 3.225798 GTGCAACAGGGCCAGCAA 61.226 61.111 6.18 0.00 38.91 3.91
2363 2479 0.316689 GACGAAAACCGGTGCAACAG 60.317 55.000 8.52 0.03 43.93 3.16
2364 2480 1.716826 GGACGAAAACCGGTGCAACA 61.717 55.000 8.52 0.00 43.93 3.33
2365 2481 1.009335 GGACGAAAACCGGTGCAAC 60.009 57.895 8.52 0.00 43.93 4.17
2366 2482 2.535788 CGGACGAAAACCGGTGCAA 61.536 57.895 8.52 0.00 45.65 4.08
2367 2483 2.968156 CGGACGAAAACCGGTGCA 60.968 61.111 8.52 0.00 45.65 4.57
2373 2489 4.282950 AGAAGAAAAACGGACGAAAACC 57.717 40.909 0.00 0.00 0.00 3.27
2374 2490 6.040962 AGTAGAAGAAAAACGGACGAAAAC 57.959 37.500 0.00 0.00 0.00 2.43
2375 2491 6.074142 GCTAGTAGAAGAAAAACGGACGAAAA 60.074 38.462 0.00 0.00 0.00 2.29
2376 2492 5.403466 GCTAGTAGAAGAAAAACGGACGAAA 59.597 40.000 0.00 0.00 0.00 3.46
2377 2493 4.919754 GCTAGTAGAAGAAAAACGGACGAA 59.080 41.667 0.00 0.00 0.00 3.85
2378 2494 4.022935 TGCTAGTAGAAGAAAAACGGACGA 60.023 41.667 0.00 0.00 0.00 4.20
2379 2495 4.232221 TGCTAGTAGAAGAAAAACGGACG 58.768 43.478 0.00 0.00 0.00 4.79
2380 2496 6.535274 TTTGCTAGTAGAAGAAAAACGGAC 57.465 37.500 0.00 0.00 0.00 4.79
2381 2497 6.204108 CCTTTTGCTAGTAGAAGAAAAACGGA 59.796 38.462 11.94 0.00 31.90 4.69
2382 2498 6.371389 CCTTTTGCTAGTAGAAGAAAAACGG 58.629 40.000 11.94 0.00 31.90 4.44
2383 2499 6.371389 CCCTTTTGCTAGTAGAAGAAAAACG 58.629 40.000 11.94 0.00 31.90 3.60
2384 2500 6.150318 GCCCTTTTGCTAGTAGAAGAAAAAC 58.850 40.000 11.94 0.00 31.90 2.43
2385 2501 5.243060 GGCCCTTTTGCTAGTAGAAGAAAAA 59.757 40.000 11.94 1.65 33.76 1.94
2386 2502 4.765339 GGCCCTTTTGCTAGTAGAAGAAAA 59.235 41.667 11.94 2.29 0.00 2.29
2387 2503 4.332828 GGCCCTTTTGCTAGTAGAAGAAA 58.667 43.478 11.94 0.00 0.00 2.52
2388 2504 3.618997 CGGCCCTTTTGCTAGTAGAAGAA 60.619 47.826 11.94 0.00 0.00 2.52
2389 2505 2.093658 CGGCCCTTTTGCTAGTAGAAGA 60.094 50.000 11.94 0.00 0.00 2.87
2390 2506 2.280628 CGGCCCTTTTGCTAGTAGAAG 58.719 52.381 0.00 4.37 0.00 2.85
2391 2507 1.626825 ACGGCCCTTTTGCTAGTAGAA 59.373 47.619 0.00 0.00 0.00 2.10
2392 2508 1.066430 CACGGCCCTTTTGCTAGTAGA 60.066 52.381 0.00 0.00 0.00 2.59
2393 2509 1.338769 ACACGGCCCTTTTGCTAGTAG 60.339 52.381 0.00 0.00 0.00 2.57
2394 2510 0.688487 ACACGGCCCTTTTGCTAGTA 59.312 50.000 0.00 0.00 0.00 1.82
2395 2511 0.889186 CACACGGCCCTTTTGCTAGT 60.889 55.000 0.00 0.00 0.00 2.57
2396 2512 0.889186 ACACACGGCCCTTTTGCTAG 60.889 55.000 0.00 0.00 0.00 3.42
2397 2513 0.466555 AACACACGGCCCTTTTGCTA 60.467 50.000 0.00 0.00 0.00 3.49
2398 2514 1.756561 AACACACGGCCCTTTTGCT 60.757 52.632 0.00 0.00 0.00 3.91
2399 2515 1.591327 CAACACACGGCCCTTTTGC 60.591 57.895 0.00 0.00 0.00 3.68
2400 2516 1.591327 GCAACACACGGCCCTTTTG 60.591 57.895 0.00 0.00 0.00 2.44
2401 2517 1.608717 TTGCAACACACGGCCCTTTT 61.609 50.000 0.00 0.00 0.00 2.27
2402 2518 2.055042 TTGCAACACACGGCCCTTT 61.055 52.632 0.00 0.00 0.00 3.11
2403 2519 2.441164 TTGCAACACACGGCCCTT 60.441 55.556 0.00 0.00 0.00 3.95
2404 2520 3.216292 GTTGCAACACACGGCCCT 61.216 61.111 24.52 0.00 0.00 5.19
2405 2521 3.483235 CTGTTGCAACACACGGCCC 62.483 63.158 27.96 0.00 34.70 5.80
2406 2522 2.026014 CTGTTGCAACACACGGCC 59.974 61.111 27.96 0.00 34.70 6.13
2407 2523 1.009675 CTCTGTTGCAACACACGGC 60.010 57.895 27.96 0.65 34.70 5.68
2408 2524 0.813610 TCCTCTGTTGCAACACACGG 60.814 55.000 27.96 24.43 34.70 4.94
2409 2525 1.013596 TTCCTCTGTTGCAACACACG 58.986 50.000 27.96 18.38 34.70 4.49
2410 2526 3.502191 TTTTCCTCTGTTGCAACACAC 57.498 42.857 27.96 3.39 34.70 3.82
2428 2544 6.701400 GGCCGTTGCAGATTATGATTATTTTT 59.299 34.615 0.00 0.00 40.13 1.94
2429 2545 6.183360 TGGCCGTTGCAGATTATGATTATTTT 60.183 34.615 0.00 0.00 40.13 1.82
2430 2546 5.301551 TGGCCGTTGCAGATTATGATTATTT 59.698 36.000 0.00 0.00 40.13 1.40
2431 2547 4.826733 TGGCCGTTGCAGATTATGATTATT 59.173 37.500 0.00 0.00 40.13 1.40
2432 2548 4.397420 TGGCCGTTGCAGATTATGATTAT 58.603 39.130 0.00 0.00 40.13 1.28
2433 2549 3.814625 TGGCCGTTGCAGATTATGATTA 58.185 40.909 0.00 0.00 40.13 1.75
2434 2550 2.653726 TGGCCGTTGCAGATTATGATT 58.346 42.857 0.00 0.00 40.13 2.57
2435 2551 2.346766 TGGCCGTTGCAGATTATGAT 57.653 45.000 0.00 0.00 40.13 2.45
2436 2552 1.948834 CATGGCCGTTGCAGATTATGA 59.051 47.619 0.00 0.00 40.13 2.15
2437 2553 1.948834 TCATGGCCGTTGCAGATTATG 59.051 47.619 0.00 0.00 40.13 1.90
2438 2554 2.346766 TCATGGCCGTTGCAGATTAT 57.653 45.000 0.00 0.00 40.13 1.28
2439 2555 2.221169 GATCATGGCCGTTGCAGATTA 58.779 47.619 0.00 0.00 40.13 1.75
2440 2556 1.027357 GATCATGGCCGTTGCAGATT 58.973 50.000 0.00 0.00 40.13 2.40
2441 2557 0.107066 TGATCATGGCCGTTGCAGAT 60.107 50.000 0.00 0.00 40.13 2.90
2442 2558 1.026182 GTGATCATGGCCGTTGCAGA 61.026 55.000 0.00 0.00 40.13 4.26
2443 2559 1.307355 TGTGATCATGGCCGTTGCAG 61.307 55.000 0.00 0.00 40.13 4.41
2444 2560 0.680601 ATGTGATCATGGCCGTTGCA 60.681 50.000 0.00 0.00 40.13 4.08
2445 2561 0.457035 AATGTGATCATGGCCGTTGC 59.543 50.000 0.00 0.00 34.19 4.17
2446 2562 2.924926 CAAAATGTGATCATGGCCGTTG 59.075 45.455 0.00 0.00 34.19 4.10
2447 2563 2.674747 GCAAAATGTGATCATGGCCGTT 60.675 45.455 0.00 0.00 34.19 4.44
2448 2564 1.135024 GCAAAATGTGATCATGGCCGT 60.135 47.619 0.00 0.00 34.19 5.68
2449 2565 1.135527 AGCAAAATGTGATCATGGCCG 59.864 47.619 0.00 0.00 34.19 6.13
2450 2566 2.546778 CAGCAAAATGTGATCATGGCC 58.453 47.619 0.00 0.00 34.19 5.36
2451 2567 1.931172 GCAGCAAAATGTGATCATGGC 59.069 47.619 0.00 0.00 34.19 4.40
2452 2568 3.239587 TGCAGCAAAATGTGATCATGG 57.760 42.857 0.00 0.00 34.19 3.66
2453 2569 4.267690 GTGATGCAGCAAAATGTGATCATG 59.732 41.667 6.05 0.00 34.19 3.07
2454 2570 4.430007 GTGATGCAGCAAAATGTGATCAT 58.570 39.130 6.05 0.00 35.59 2.45
2455 2571 3.367600 GGTGATGCAGCAAAATGTGATCA 60.368 43.478 6.05 0.00 0.00 2.92
2456 2572 3.184541 GGTGATGCAGCAAAATGTGATC 58.815 45.455 6.05 0.00 0.00 2.92
2457 2573 2.416296 CGGTGATGCAGCAAAATGTGAT 60.416 45.455 6.05 0.00 0.00 3.06
2458 2574 1.068402 CGGTGATGCAGCAAAATGTGA 60.068 47.619 6.05 0.00 0.00 3.58
2459 2575 1.068402 TCGGTGATGCAGCAAAATGTG 60.068 47.619 6.05 0.00 0.00 3.21
2460 2576 1.200716 CTCGGTGATGCAGCAAAATGT 59.799 47.619 6.05 0.00 0.00 2.71
2461 2577 1.469703 TCTCGGTGATGCAGCAAAATG 59.530 47.619 6.05 0.00 0.00 2.32
2462 2578 1.825090 TCTCGGTGATGCAGCAAAAT 58.175 45.000 6.05 0.00 0.00 1.82
2463 2579 1.825090 ATCTCGGTGATGCAGCAAAA 58.175 45.000 6.05 0.00 33.43 2.44
2464 2580 2.689553 TATCTCGGTGATGCAGCAAA 57.310 45.000 6.05 0.00 36.65 3.68
2465 2581 2.916702 ATATCTCGGTGATGCAGCAA 57.083 45.000 6.05 0.00 36.65 3.91
2466 2582 4.541973 AATATATCTCGGTGATGCAGCA 57.458 40.909 0.00 0.00 36.65 4.41
2467 2583 6.276091 TGATAATATATCTCGGTGATGCAGC 58.724 40.000 0.00 0.00 36.65 5.25
2468 2584 8.707938 TTTGATAATATATCTCGGTGATGCAG 57.292 34.615 2.94 0.00 36.65 4.41
2469 2585 9.671279 ATTTTGATAATATATCTCGGTGATGCA 57.329 29.630 2.94 0.00 36.65 3.96
2525 2641 9.559958 CAAAATTTCTAATATCTGCACGAGTTT 57.440 29.630 0.00 0.00 0.00 2.66
2526 2642 8.946085 TCAAAATTTCTAATATCTGCACGAGTT 58.054 29.630 0.00 0.00 0.00 3.01
2527 2643 8.492673 TCAAAATTTCTAATATCTGCACGAGT 57.507 30.769 0.00 0.00 0.00 4.18
2528 2644 9.214953 GTTCAAAATTTCTAATATCTGCACGAG 57.785 33.333 0.00 0.00 0.00 4.18
2529 2645 8.726068 TGTTCAAAATTTCTAATATCTGCACGA 58.274 29.630 0.00 0.00 0.00 4.35
2530 2646 8.894409 TGTTCAAAATTTCTAATATCTGCACG 57.106 30.769 0.00 0.00 0.00 5.34
2791 2907 0.743688 TGTCCGTGCTGCATGTTTTT 59.256 45.000 19.58 0.00 0.00 1.94
2792 2908 0.961019 ATGTCCGTGCTGCATGTTTT 59.039 45.000 19.58 0.25 0.00 2.43
2793 2909 0.241749 CATGTCCGTGCTGCATGTTT 59.758 50.000 19.58 0.00 0.00 2.83
2794 2910 1.588824 CCATGTCCGTGCTGCATGTT 61.589 55.000 19.58 0.26 0.00 2.71
2795 2911 2.042259 CCATGTCCGTGCTGCATGT 61.042 57.895 19.58 0.00 0.00 3.21
2796 2912 2.767445 CCCATGTCCGTGCTGCATG 61.767 63.158 14.82 14.82 0.00 4.06
2797 2913 2.438975 CCCATGTCCGTGCTGCAT 60.439 61.111 5.27 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.