Multiple sequence alignment - TraesCS4A01G498300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G498300 chr4A 100.000 3833 0 0 1 3833 743865853 743869685 0.000000e+00 7079
1 TraesCS4A01G498300 chr4A 95.718 1658 42 12 2178 3833 742891950 742893580 0.000000e+00 2641
2 TraesCS4A01G498300 chr4A 96.393 915 24 4 1018 1923 742890728 742891642 0.000000e+00 1498
3 TraesCS4A01G498300 chr4A 85.118 719 91 14 1 707 24717094 24716380 0.000000e+00 721
4 TraesCS4A01G498300 chr4A 85.537 242 13 4 1953 2172 742891640 742891881 2.300000e-57 233
5 TraesCS4A01G498300 chr7D 95.718 1658 66 4 2178 3833 1414485 1412831 0.000000e+00 2663
6 TraesCS4A01G498300 chr7D 92.523 963 46 11 1018 1966 1419491 1418541 0.000000e+00 1356
7 TraesCS4A01G498300 chr7D 85.315 715 81 20 9 709 263366585 263367289 0.000000e+00 717
8 TraesCS4A01G498300 chrUn 94.301 1667 61 13 2173 3833 295470483 295472121 0.000000e+00 2521
9 TraesCS4A01G498300 chrUn 92.024 1166 44 21 1018 2172 292914334 292915461 0.000000e+00 1592
10 TraesCS4A01G498300 chr6B 85.333 900 111 8 1034 1927 620283953 620283069 0.000000e+00 911
11 TraesCS4A01G498300 chr6B 85.714 714 99 3 2207 2918 620281941 620281229 0.000000e+00 750
12 TraesCS4A01G498300 chr6B 84.743 721 95 13 1 711 416488167 416488882 0.000000e+00 708
13 TraesCS4A01G498300 chr6B 80.488 164 26 5 3542 3700 620271139 620270977 1.870000e-23 121
14 TraesCS4A01G498300 chr6D 84.475 934 113 20 999 1927 412180335 412179429 0.000000e+00 893
15 TraesCS4A01G498300 chr6D 84.744 898 120 11 1034 1927 412626563 412627447 0.000000e+00 883
16 TraesCS4A01G498300 chr6D 85.525 829 103 9 1109 1934 412010402 412009588 0.000000e+00 850
17 TraesCS4A01G498300 chr6D 86.555 714 93 3 2207 2918 412628585 412629297 0.000000e+00 784
18 TraesCS4A01G498300 chr6D 84.454 714 99 6 2207 2918 412178599 412177896 0.000000e+00 693
19 TraesCS4A01G498300 chr6D 83.521 710 112 3 2213 2918 412006679 412005971 0.000000e+00 658
20 TraesCS4A01G498300 chr6A 84.718 903 118 8 1034 1929 557402197 557401308 0.000000e+00 885
21 TraesCS4A01G498300 chr6A 84.113 919 115 16 1018 1927 557921298 557920402 0.000000e+00 859
22 TraesCS4A01G498300 chr6A 85.154 714 103 3 2207 2918 557792949 557792237 0.000000e+00 728
23 TraesCS4A01G498300 chr6A 83.803 710 110 4 2213 2918 557398597 557397889 0.000000e+00 669
24 TraesCS4A01G498300 chr6A 79.394 165 27 7 3542 3700 557140308 557140145 4.050000e-20 110
25 TraesCS4A01G498300 chr5D 85.814 719 90 9 1 709 408479420 408480136 0.000000e+00 752
26 TraesCS4A01G498300 chr5D 85.160 721 92 13 1 711 98404652 98403937 0.000000e+00 725
27 TraesCS4A01G498300 chr5D 84.669 724 94 13 1 711 333392863 333392144 0.000000e+00 706
28 TraesCS4A01G498300 chr1D 85.319 722 87 17 1 709 298322967 298323682 0.000000e+00 728
29 TraesCS4A01G498300 chr5A 85.000 720 95 10 1 709 594948491 594949208 0.000000e+00 719
30 TraesCS4A01G498300 chr4B 85.000 720 91 15 1 709 381639403 381640116 0.000000e+00 715


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G498300 chr4A 743865853 743869685 3832 False 7079.000000 7079 100.000000 1 3833 1 chr4A.!!$F1 3832
1 TraesCS4A01G498300 chr4A 742890728 742893580 2852 False 1457.333333 2641 92.549333 1018 3833 3 chr4A.!!$F2 2815
2 TraesCS4A01G498300 chr4A 24716380 24717094 714 True 721.000000 721 85.118000 1 707 1 chr4A.!!$R1 706
3 TraesCS4A01G498300 chr7D 1412831 1414485 1654 True 2663.000000 2663 95.718000 2178 3833 1 chr7D.!!$R1 1655
4 TraesCS4A01G498300 chr7D 1418541 1419491 950 True 1356.000000 1356 92.523000 1018 1966 1 chr7D.!!$R2 948
5 TraesCS4A01G498300 chr7D 263366585 263367289 704 False 717.000000 717 85.315000 9 709 1 chr7D.!!$F1 700
6 TraesCS4A01G498300 chrUn 295470483 295472121 1638 False 2521.000000 2521 94.301000 2173 3833 1 chrUn.!!$F2 1660
7 TraesCS4A01G498300 chrUn 292914334 292915461 1127 False 1592.000000 1592 92.024000 1018 2172 1 chrUn.!!$F1 1154
8 TraesCS4A01G498300 chr6B 620281229 620283953 2724 True 830.500000 911 85.523500 1034 2918 2 chr6B.!!$R2 1884
9 TraesCS4A01G498300 chr6B 416488167 416488882 715 False 708.000000 708 84.743000 1 711 1 chr6B.!!$F1 710
10 TraesCS4A01G498300 chr6D 412626563 412629297 2734 False 833.500000 883 85.649500 1034 2918 2 chr6D.!!$F1 1884
11 TraesCS4A01G498300 chr6D 412177896 412180335 2439 True 793.000000 893 84.464500 999 2918 2 chr6D.!!$R2 1919
12 TraesCS4A01G498300 chr6D 412005971 412010402 4431 True 754.000000 850 84.523000 1109 2918 2 chr6D.!!$R1 1809
13 TraesCS4A01G498300 chr6A 557920402 557921298 896 True 859.000000 859 84.113000 1018 1927 1 chr6A.!!$R3 909
14 TraesCS4A01G498300 chr6A 557397889 557402197 4308 True 777.000000 885 84.260500 1034 2918 2 chr6A.!!$R4 1884
15 TraesCS4A01G498300 chr6A 557792237 557792949 712 True 728.000000 728 85.154000 2207 2918 1 chr6A.!!$R2 711
16 TraesCS4A01G498300 chr5D 408479420 408480136 716 False 752.000000 752 85.814000 1 709 1 chr5D.!!$F1 708
17 TraesCS4A01G498300 chr5D 98403937 98404652 715 True 725.000000 725 85.160000 1 711 1 chr5D.!!$R1 710
18 TraesCS4A01G498300 chr5D 333392144 333392863 719 True 706.000000 706 84.669000 1 711 1 chr5D.!!$R2 710
19 TraesCS4A01G498300 chr1D 298322967 298323682 715 False 728.000000 728 85.319000 1 709 1 chr1D.!!$F1 708
20 TraesCS4A01G498300 chr5A 594948491 594949208 717 False 719.000000 719 85.000000 1 709 1 chr5A.!!$F1 708
21 TraesCS4A01G498300 chr4B 381639403 381640116 713 False 715.000000 715 85.000000 1 709 1 chr4B.!!$F1 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 728 0.032952 TCCTACAAAACTCTGCGCGT 59.967 50.0 8.43 0.0 0.0 6.01 F
714 730 0.091344 CTACAAAACTCTGCGCGTCG 59.909 55.0 8.43 0.0 0.0 5.12 F
906 922 0.107831 ACCAGGCAAGTAAACGAGCA 59.892 50.0 0.00 0.0 0.0 4.26 F
933 949 0.177604 TGCCAAGCCACCAAACTTTG 59.822 50.0 0.00 0.0 0.0 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 1870 1.812922 CATGTCCTGCTCGTGCTCC 60.813 63.158 11.19 0.0 40.48 4.70 R
2114 6538 4.052199 AGGCCTAAATATAAGGGTGTGGT 58.948 43.478 1.29 0.0 34.46 4.16 R
2724 7654 0.393077 CACCTGGTTCAACTCCGAGT 59.607 55.000 0.00 0.0 0.00 4.18 R
3188 8129 9.031537 ACCCTATTTCTTTTGGTAAAGGTTATG 57.968 33.333 0.00 0.0 40.93 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 46 5.106157 ACCATGAGCTTTGTTAACATAGTGC 60.106 40.000 22.05 16.77 0.00 4.40
57 60 9.051679 GTTAACATAGTGCAATCATATGGTGTA 57.948 33.333 2.13 0.00 32.36 2.90
58 61 9.620259 TTAACATAGTGCAATCATATGGTGTAA 57.380 29.630 2.13 5.23 32.36 2.41
67 71 7.168219 GCAATCATATGGTGTAATTCCCTCTA 58.832 38.462 2.13 0.00 0.00 2.43
78 82 9.628500 GGTGTAATTCCCTCTATATCTTTGTTT 57.372 33.333 0.00 0.00 0.00 2.83
150 154 9.636789 AATATTGGATTTGAGATCACTTGATGA 57.363 29.630 0.00 0.00 43.13 2.92
163 167 3.857665 CACTTGATGAATGTCTTGCATGC 59.142 43.478 11.82 11.82 37.96 4.06
164 168 3.508402 ACTTGATGAATGTCTTGCATGCA 59.492 39.130 18.46 18.46 46.54 3.96
170 174 4.263435 TGAATGTCTTGCATGCAGATACA 58.737 39.130 24.77 24.77 38.20 2.29
204 209 9.975218 ACAATGGGTATTCTATTGAGTTACTTT 57.025 29.630 8.64 0.00 36.09 2.66
320 325 7.123697 TCTCCGATAGAAACTTTGGAGTGATTA 59.876 37.037 6.02 0.00 35.00 1.75
329 334 6.655078 ACTTTGGAGTGATTATTTGTTGCT 57.345 33.333 0.00 0.00 33.99 3.91
333 338 5.771469 TGGAGTGATTATTTGTTGCTTGTG 58.229 37.500 0.00 0.00 0.00 3.33
334 339 5.534278 TGGAGTGATTATTTGTTGCTTGTGA 59.466 36.000 0.00 0.00 0.00 3.58
356 363 9.330063 TGTGAGGATTGTTATATGATTCAGTTC 57.670 33.333 0.00 0.00 0.00 3.01
413 420 2.031120 TGAACCTGAGGCCTTGTTTTG 58.969 47.619 6.77 0.00 0.00 2.44
417 424 3.637769 ACCTGAGGCCTTGTTTTGTAAA 58.362 40.909 6.77 0.00 0.00 2.01
422 429 5.983540 TGAGGCCTTGTTTTGTAAACATTT 58.016 33.333 6.77 0.00 0.00 2.32
455 463 2.289547 TGCTCGTTGTTTTCTACTTGCC 59.710 45.455 0.00 0.00 0.00 4.52
476 484 7.721286 TGCCACCTTGTTGTTTTTATTATTG 57.279 32.000 0.00 0.00 0.00 1.90
531 546 4.100035 ACTTGTATCATCATCTCTTCGCCA 59.900 41.667 0.00 0.00 0.00 5.69
534 549 5.614308 TGTATCATCATCTCTTCGCCAAAT 58.386 37.500 0.00 0.00 0.00 2.32
562 577 9.189156 AGTGCACCTATACAATTTATCATTGTT 57.811 29.630 14.63 0.00 41.81 2.83
594 610 5.420421 TGTTGGGACACAAAAGATTTCTTGA 59.580 36.000 0.00 0.00 41.58 3.02
652 668 2.408565 TCCTACACCTCCCATGGATTC 58.591 52.381 15.22 0.00 0.00 2.52
711 727 0.438830 GTCCTACAAAACTCTGCGCG 59.561 55.000 0.00 0.00 0.00 6.86
712 728 0.032952 TCCTACAAAACTCTGCGCGT 59.967 50.000 8.43 0.00 0.00 6.01
713 729 0.438830 CCTACAAAACTCTGCGCGTC 59.561 55.000 8.43 0.00 0.00 5.19
714 730 0.091344 CTACAAAACTCTGCGCGTCG 59.909 55.000 8.43 0.00 0.00 5.12
715 731 1.279527 TACAAAACTCTGCGCGTCGG 61.280 55.000 8.43 5.41 0.00 4.79
716 732 2.279918 AAAACTCTGCGCGTCGGT 60.280 55.556 8.43 0.00 0.00 4.69
717 733 1.007038 AAAACTCTGCGCGTCGGTA 60.007 52.632 8.43 0.00 0.00 4.02
718 734 0.389426 AAAACTCTGCGCGTCGGTAT 60.389 50.000 8.43 0.00 0.00 2.73
719 735 0.389426 AAACTCTGCGCGTCGGTATT 60.389 50.000 8.43 2.00 0.00 1.89
720 736 0.801067 AACTCTGCGCGTCGGTATTC 60.801 55.000 8.43 0.00 0.00 1.75
721 737 2.277692 TCTGCGCGTCGGTATTCG 60.278 61.111 8.43 0.00 40.90 3.34
722 738 3.320078 CTGCGCGTCGGTATTCGG 61.320 66.667 8.43 0.00 39.77 4.30
723 739 4.858433 TGCGCGTCGGTATTCGGG 62.858 66.667 8.43 0.00 41.59 5.14
724 740 4.557605 GCGCGTCGGTATTCGGGA 62.558 66.667 8.43 0.00 41.28 5.14
725 741 2.333938 CGCGTCGGTATTCGGGAT 59.666 61.111 0.00 0.00 41.28 3.85
726 742 2.014554 CGCGTCGGTATTCGGGATG 61.015 63.158 0.00 0.00 41.28 3.51
727 743 1.663702 GCGTCGGTATTCGGGATGG 60.664 63.158 0.00 0.00 39.77 3.51
728 744 2.035421 CGTCGGTATTCGGGATGGA 58.965 57.895 0.00 0.00 39.77 3.41
729 745 0.386476 CGTCGGTATTCGGGATGGAA 59.614 55.000 0.00 0.00 39.77 3.53
730 746 1.000506 CGTCGGTATTCGGGATGGAAT 59.999 52.381 0.00 0.00 39.78 3.01
731 747 2.229543 CGTCGGTATTCGGGATGGAATA 59.770 50.000 0.00 0.00 37.74 1.75
732 748 3.672511 CGTCGGTATTCGGGATGGAATAG 60.673 52.174 0.00 0.00 39.02 1.73
733 749 3.508793 GTCGGTATTCGGGATGGAATAGA 59.491 47.826 0.00 0.00 39.02 1.98
734 750 3.508793 TCGGTATTCGGGATGGAATAGAC 59.491 47.826 0.00 0.00 39.02 2.59
735 751 3.510360 CGGTATTCGGGATGGAATAGACT 59.490 47.826 0.00 0.00 39.02 3.24
736 752 4.703575 CGGTATTCGGGATGGAATAGACTA 59.296 45.833 0.00 0.00 39.02 2.59
737 753 5.392811 CGGTATTCGGGATGGAATAGACTAC 60.393 48.000 0.00 0.00 39.02 2.73
738 754 4.785511 ATTCGGGATGGAATAGACTACG 57.214 45.455 0.00 0.00 34.96 3.51
739 755 3.219176 TCGGGATGGAATAGACTACGT 57.781 47.619 0.00 0.00 0.00 3.57
740 756 3.559069 TCGGGATGGAATAGACTACGTT 58.441 45.455 0.00 0.00 0.00 3.99
741 757 3.317149 TCGGGATGGAATAGACTACGTTG 59.683 47.826 0.00 0.00 0.00 4.10
742 758 3.552273 CGGGATGGAATAGACTACGTTGG 60.552 52.174 0.00 0.00 0.00 3.77
743 759 3.391049 GGATGGAATAGACTACGTTGGC 58.609 50.000 0.00 0.00 0.00 4.52
744 760 2.572191 TGGAATAGACTACGTTGGCG 57.428 50.000 0.00 0.00 44.93 5.69
745 761 1.135527 TGGAATAGACTACGTTGGCGG 59.864 52.381 0.00 0.00 43.45 6.13
746 762 1.406539 GGAATAGACTACGTTGGCGGA 59.593 52.381 0.00 0.00 43.45 5.54
762 778 2.099141 CGGAGCAAGTTCCAAGATGA 57.901 50.000 3.85 0.00 37.05 2.92
763 779 2.005451 CGGAGCAAGTTCCAAGATGAG 58.995 52.381 3.85 0.00 37.05 2.90
764 780 1.742268 GGAGCAAGTTCCAAGATGAGC 59.258 52.381 0.00 0.00 37.20 4.26
765 781 1.742268 GAGCAAGTTCCAAGATGAGCC 59.258 52.381 0.00 0.00 0.00 4.70
766 782 1.074405 AGCAAGTTCCAAGATGAGCCA 59.926 47.619 0.00 0.00 0.00 4.75
767 783 1.888512 GCAAGTTCCAAGATGAGCCAA 59.111 47.619 0.00 0.00 0.00 4.52
768 784 2.297033 GCAAGTTCCAAGATGAGCCAAA 59.703 45.455 0.00 0.00 0.00 3.28
769 785 3.243839 GCAAGTTCCAAGATGAGCCAAAA 60.244 43.478 0.00 0.00 0.00 2.44
770 786 4.301628 CAAGTTCCAAGATGAGCCAAAAC 58.698 43.478 0.00 0.00 0.00 2.43
771 787 2.893489 AGTTCCAAGATGAGCCAAAACC 59.107 45.455 0.00 0.00 0.00 3.27
772 788 1.923356 TCCAAGATGAGCCAAAACCC 58.077 50.000 0.00 0.00 0.00 4.11
773 789 1.428912 TCCAAGATGAGCCAAAACCCT 59.571 47.619 0.00 0.00 0.00 4.34
774 790 2.647299 TCCAAGATGAGCCAAAACCCTA 59.353 45.455 0.00 0.00 0.00 3.53
775 791 3.019564 CCAAGATGAGCCAAAACCCTAG 58.980 50.000 0.00 0.00 0.00 3.02
776 792 3.019564 CAAGATGAGCCAAAACCCTAGG 58.980 50.000 0.06 0.06 0.00 3.02
777 793 2.279173 AGATGAGCCAAAACCCTAGGT 58.721 47.619 8.29 0.00 37.65 3.08
778 794 2.025887 AGATGAGCCAAAACCCTAGGTG 60.026 50.000 8.29 1.63 35.34 4.00
779 795 0.404040 TGAGCCAAAACCCTAGGTGG 59.596 55.000 8.29 9.90 35.34 4.61
780 796 0.404426 GAGCCAAAACCCTAGGTGGT 59.596 55.000 15.62 1.71 41.55 4.16
787 803 1.946984 AACCCTAGGTGGTTCGATGA 58.053 50.000 8.29 0.00 45.51 2.92
788 804 2.176247 ACCCTAGGTGGTTCGATGAT 57.824 50.000 8.29 0.00 33.91 2.45
789 805 2.478292 ACCCTAGGTGGTTCGATGATT 58.522 47.619 8.29 0.00 33.91 2.57
790 806 2.844348 ACCCTAGGTGGTTCGATGATTT 59.156 45.455 8.29 0.00 33.91 2.17
791 807 3.118371 ACCCTAGGTGGTTCGATGATTTC 60.118 47.826 8.29 0.00 33.91 2.17
792 808 3.134804 CCCTAGGTGGTTCGATGATTTCT 59.865 47.826 8.29 0.00 0.00 2.52
793 809 4.384208 CCCTAGGTGGTTCGATGATTTCTT 60.384 45.833 8.29 0.00 0.00 2.52
794 810 5.186198 CCTAGGTGGTTCGATGATTTCTTT 58.814 41.667 0.00 0.00 0.00 2.52
795 811 5.065218 CCTAGGTGGTTCGATGATTTCTTTG 59.935 44.000 0.00 0.00 0.00 2.77
796 812 3.758554 AGGTGGTTCGATGATTTCTTTGG 59.241 43.478 0.00 0.00 0.00 3.28
797 813 3.501950 GTGGTTCGATGATTTCTTTGGC 58.498 45.455 0.00 0.00 0.00 4.52
798 814 2.491693 TGGTTCGATGATTTCTTTGGCC 59.508 45.455 0.00 0.00 0.00 5.36
799 815 2.477863 GGTTCGATGATTTCTTTGGCCG 60.478 50.000 0.00 0.00 0.00 6.13
800 816 2.394930 TCGATGATTTCTTTGGCCGA 57.605 45.000 0.00 0.00 0.00 5.54
801 817 2.279741 TCGATGATTTCTTTGGCCGAG 58.720 47.619 0.00 0.00 0.00 4.63
802 818 1.331756 CGATGATTTCTTTGGCCGAGG 59.668 52.381 0.00 0.00 0.00 4.63
803 819 2.643551 GATGATTTCTTTGGCCGAGGA 58.356 47.619 0.00 0.00 0.00 3.71
804 820 2.806945 TGATTTCTTTGGCCGAGGAT 57.193 45.000 5.48 1.13 0.00 3.24
805 821 2.368439 TGATTTCTTTGGCCGAGGATG 58.632 47.619 5.48 0.00 0.00 3.51
806 822 1.678101 GATTTCTTTGGCCGAGGATGG 59.322 52.381 5.48 0.00 0.00 3.51
807 823 0.404040 TTTCTTTGGCCGAGGATGGT 59.596 50.000 5.48 0.00 0.00 3.55
808 824 0.322456 TTCTTTGGCCGAGGATGGTG 60.322 55.000 5.48 0.00 0.00 4.17
809 825 1.198094 TCTTTGGCCGAGGATGGTGA 61.198 55.000 0.00 0.00 0.00 4.02
810 826 0.745845 CTTTGGCCGAGGATGGTGAG 60.746 60.000 0.00 0.00 0.00 3.51
811 827 2.819984 TTTGGCCGAGGATGGTGAGC 62.820 60.000 0.00 0.00 0.00 4.26
812 828 3.785859 GGCCGAGGATGGTGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
813 829 2.202987 GCCGAGGATGGTGAGCAG 60.203 66.667 0.00 0.00 0.00 4.24
814 830 3.023949 GCCGAGGATGGTGAGCAGT 62.024 63.158 0.00 0.00 0.00 4.40
815 831 1.676678 GCCGAGGATGGTGAGCAGTA 61.677 60.000 0.00 0.00 0.00 2.74
816 832 1.043816 CCGAGGATGGTGAGCAGTAT 58.956 55.000 0.00 0.00 0.00 2.12
817 833 2.239400 CCGAGGATGGTGAGCAGTATA 58.761 52.381 0.00 0.00 0.00 1.47
818 834 2.828520 CCGAGGATGGTGAGCAGTATAT 59.171 50.000 0.00 0.00 0.00 0.86
819 835 3.367806 CCGAGGATGGTGAGCAGTATATG 60.368 52.174 0.00 0.00 0.00 1.78
820 836 3.256879 CGAGGATGGTGAGCAGTATATGT 59.743 47.826 0.00 0.00 0.00 2.29
821 837 4.459337 CGAGGATGGTGAGCAGTATATGTA 59.541 45.833 0.00 0.00 0.00 2.29
822 838 5.392487 CGAGGATGGTGAGCAGTATATGTAG 60.392 48.000 0.00 0.00 0.00 2.74
823 839 4.774726 AGGATGGTGAGCAGTATATGTAGG 59.225 45.833 0.00 0.00 0.00 3.18
824 840 4.772624 GGATGGTGAGCAGTATATGTAGGA 59.227 45.833 0.00 0.00 0.00 2.94
825 841 5.105554 GGATGGTGAGCAGTATATGTAGGAG 60.106 48.000 0.00 0.00 0.00 3.69
826 842 4.152647 TGGTGAGCAGTATATGTAGGAGG 58.847 47.826 0.00 0.00 0.00 4.30
827 843 4.141018 TGGTGAGCAGTATATGTAGGAGGA 60.141 45.833 0.00 0.00 0.00 3.71
828 844 4.218852 GGTGAGCAGTATATGTAGGAGGAC 59.781 50.000 0.00 0.00 0.00 3.85
829 845 4.218852 GTGAGCAGTATATGTAGGAGGACC 59.781 50.000 0.00 0.00 0.00 4.46
830 846 4.141018 TGAGCAGTATATGTAGGAGGACCA 60.141 45.833 0.00 0.00 38.94 4.02
831 847 4.411927 AGCAGTATATGTAGGAGGACCAG 58.588 47.826 0.00 0.00 38.94 4.00
832 848 4.106502 AGCAGTATATGTAGGAGGACCAGA 59.893 45.833 0.00 0.00 38.94 3.86
833 849 4.461081 GCAGTATATGTAGGAGGACCAGAG 59.539 50.000 0.00 0.00 38.94 3.35
834 850 5.013547 CAGTATATGTAGGAGGACCAGAGG 58.986 50.000 0.00 0.00 38.94 3.69
835 851 4.920749 AGTATATGTAGGAGGACCAGAGGA 59.079 45.833 0.00 0.00 38.94 3.71
836 852 5.557939 AGTATATGTAGGAGGACCAGAGGAT 59.442 44.000 0.00 0.00 38.94 3.24
837 853 2.461300 TGTAGGAGGACCAGAGGATG 57.539 55.000 0.00 0.00 38.94 3.51
845 861 4.919653 CCAGAGGATGGTGTCACG 57.080 61.111 0.00 0.00 44.91 4.35
846 862 2.276869 CCAGAGGATGGTGTCACGA 58.723 57.895 0.00 0.00 44.91 4.35
847 863 0.826715 CCAGAGGATGGTGTCACGAT 59.173 55.000 0.00 0.00 44.91 3.73
848 864 1.472201 CCAGAGGATGGTGTCACGATG 60.472 57.143 5.07 0.00 44.91 3.84
849 865 1.478105 CAGAGGATGGTGTCACGATGA 59.522 52.381 5.07 0.00 0.00 2.92
850 866 5.834819 CCAGAGGATGGTGTCACGATGAC 62.835 56.522 5.07 10.12 44.91 3.06
861 877 4.327854 GTCACGATGACAATCTCAAACC 57.672 45.455 11.62 0.00 46.22 3.27
862 878 2.993220 TCACGATGACAATCTCAAACCG 59.007 45.455 0.00 0.00 30.60 4.44
863 879 2.993220 CACGATGACAATCTCAAACCGA 59.007 45.455 0.00 0.00 30.60 4.69
864 880 2.993899 ACGATGACAATCTCAAACCGAC 59.006 45.455 0.00 0.00 30.60 4.79
865 881 3.254060 CGATGACAATCTCAAACCGACT 58.746 45.455 0.00 0.00 30.60 4.18
866 882 3.679980 CGATGACAATCTCAAACCGACTT 59.320 43.478 0.00 0.00 30.60 3.01
867 883 4.152402 CGATGACAATCTCAAACCGACTTT 59.848 41.667 0.00 0.00 30.60 2.66
868 884 5.347635 CGATGACAATCTCAAACCGACTTTA 59.652 40.000 0.00 0.00 30.60 1.85
869 885 6.036083 CGATGACAATCTCAAACCGACTTTAT 59.964 38.462 0.00 0.00 30.60 1.40
870 886 7.413000 CGATGACAATCTCAAACCGACTTTATT 60.413 37.037 0.00 0.00 30.60 1.40
871 887 7.504924 TGACAATCTCAAACCGACTTTATTT 57.495 32.000 0.00 0.00 0.00 1.40
872 888 7.936584 TGACAATCTCAAACCGACTTTATTTT 58.063 30.769 0.00 0.00 0.00 1.82
873 889 8.073768 TGACAATCTCAAACCGACTTTATTTTC 58.926 33.333 0.00 0.00 0.00 2.29
874 890 7.936584 ACAATCTCAAACCGACTTTATTTTCA 58.063 30.769 0.00 0.00 0.00 2.69
875 891 8.410141 ACAATCTCAAACCGACTTTATTTTCAA 58.590 29.630 0.00 0.00 0.00 2.69
876 892 8.905702 CAATCTCAAACCGACTTTATTTTCAAG 58.094 33.333 0.00 0.00 0.00 3.02
877 893 7.562454 TCTCAAACCGACTTTATTTTCAAGT 57.438 32.000 0.00 0.00 37.18 3.16
878 894 7.636326 TCTCAAACCGACTTTATTTTCAAGTC 58.364 34.615 3.19 3.19 44.62 3.01
901 917 3.746940 TGGACTTACCAGGCAAGTAAAC 58.253 45.455 4.91 0.43 44.64 2.01
902 918 2.740447 GGACTTACCAGGCAAGTAAACG 59.260 50.000 4.91 0.00 36.38 3.60
903 919 3.555586 GGACTTACCAGGCAAGTAAACGA 60.556 47.826 4.91 0.00 36.38 3.85
904 920 3.660865 ACTTACCAGGCAAGTAAACGAG 58.339 45.455 2.83 0.00 34.50 4.18
905 921 2.088950 TACCAGGCAAGTAAACGAGC 57.911 50.000 0.00 0.00 0.00 5.03
906 922 0.107831 ACCAGGCAAGTAAACGAGCA 59.892 50.000 0.00 0.00 0.00 4.26
907 923 1.234821 CCAGGCAAGTAAACGAGCAA 58.765 50.000 0.00 0.00 0.00 3.91
908 924 1.069227 CCAGGCAAGTAAACGAGCAAC 60.069 52.381 0.00 0.00 0.00 4.17
909 925 1.873591 CAGGCAAGTAAACGAGCAACT 59.126 47.619 0.00 0.00 0.00 3.16
910 926 2.290641 CAGGCAAGTAAACGAGCAACTT 59.709 45.455 0.00 0.00 33.82 2.66
914 930 4.795970 CAAGTAAACGAGCAACTTGTCT 57.204 40.909 12.97 0.00 43.20 3.41
915 931 4.518217 CAAGTAAACGAGCAACTTGTCTG 58.482 43.478 12.97 0.00 43.20 3.51
916 932 2.544267 AGTAAACGAGCAACTTGTCTGC 59.456 45.455 0.00 0.00 40.24 4.26
917 933 0.663153 AAACGAGCAACTTGTCTGCC 59.337 50.000 0.00 0.00 40.86 4.85
918 934 0.463654 AACGAGCAACTTGTCTGCCA 60.464 50.000 0.00 0.00 40.86 4.92
919 935 0.463654 ACGAGCAACTTGTCTGCCAA 60.464 50.000 0.00 0.00 40.86 4.52
925 941 3.359002 CTTGTCTGCCAAGCCACC 58.641 61.111 0.00 0.00 43.84 4.61
926 942 1.529010 CTTGTCTGCCAAGCCACCA 60.529 57.895 0.00 0.00 43.84 4.17
927 943 1.076412 TTGTCTGCCAAGCCACCAA 60.076 52.632 0.00 0.00 0.00 3.67
928 944 0.685785 TTGTCTGCCAAGCCACCAAA 60.686 50.000 0.00 0.00 0.00 3.28
929 945 1.363807 GTCTGCCAAGCCACCAAAC 59.636 57.895 0.00 0.00 0.00 2.93
930 946 1.109323 GTCTGCCAAGCCACCAAACT 61.109 55.000 0.00 0.00 0.00 2.66
931 947 0.396974 TCTGCCAAGCCACCAAACTT 60.397 50.000 0.00 0.00 0.00 2.66
932 948 0.465287 CTGCCAAGCCACCAAACTTT 59.535 50.000 0.00 0.00 0.00 2.66
933 949 0.177604 TGCCAAGCCACCAAACTTTG 59.822 50.000 0.00 0.00 0.00 2.77
951 967 6.944234 ACTTTGGAGTGCTTATAAATAGGC 57.056 37.500 0.00 0.00 33.99 3.93
952 968 5.828328 ACTTTGGAGTGCTTATAAATAGGCC 59.172 40.000 0.00 0.00 34.80 5.19
953 969 5.646692 TTGGAGTGCTTATAAATAGGCCT 57.353 39.130 11.78 11.78 34.80 5.19
954 970 5.646692 TGGAGTGCTTATAAATAGGCCTT 57.353 39.130 12.58 0.00 34.80 4.35
955 971 5.621193 TGGAGTGCTTATAAATAGGCCTTC 58.379 41.667 12.58 0.00 34.80 3.46
956 972 5.004448 GGAGTGCTTATAAATAGGCCTTCC 58.996 45.833 12.58 2.38 34.80 3.46
957 973 4.642429 AGTGCTTATAAATAGGCCTTCCG 58.358 43.478 12.58 0.00 34.80 4.30
958 974 4.102681 AGTGCTTATAAATAGGCCTTCCGT 59.897 41.667 12.58 0.00 34.80 4.69
959 975 4.451435 GTGCTTATAAATAGGCCTTCCGTC 59.549 45.833 12.58 0.00 34.80 4.79
960 976 4.347000 TGCTTATAAATAGGCCTTCCGTCT 59.653 41.667 12.58 0.00 34.80 4.18
961 977 4.691216 GCTTATAAATAGGCCTTCCGTCTG 59.309 45.833 12.58 0.00 37.47 3.51
962 978 5.742255 GCTTATAAATAGGCCTTCCGTCTGT 60.742 44.000 12.58 0.00 37.47 3.41
963 979 2.693267 AAATAGGCCTTCCGTCTGTC 57.307 50.000 12.58 0.00 37.47 3.51
964 980 1.867363 AATAGGCCTTCCGTCTGTCT 58.133 50.000 12.58 0.00 37.47 3.41
965 981 1.115467 ATAGGCCTTCCGTCTGTCTG 58.885 55.000 12.58 0.00 37.47 3.51
966 982 1.605058 TAGGCCTTCCGTCTGTCTGC 61.605 60.000 12.58 0.00 37.47 4.26
967 983 2.659610 GCCTTCCGTCTGTCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
968 984 1.605058 GGCCTTCCGTCTGTCTGCTA 61.605 60.000 0.00 0.00 0.00 3.49
969 985 0.458716 GCCTTCCGTCTGTCTGCTAC 60.459 60.000 0.00 0.00 0.00 3.58
970 986 0.888619 CCTTCCGTCTGTCTGCTACA 59.111 55.000 0.00 0.00 36.42 2.74
971 987 1.402984 CCTTCCGTCTGTCTGCTACAC 60.403 57.143 0.00 0.00 33.45 2.90
972 988 1.269723 CTTCCGTCTGTCTGCTACACA 59.730 52.381 0.00 0.00 33.45 3.72
973 989 1.545841 TCCGTCTGTCTGCTACACAT 58.454 50.000 0.00 0.00 33.45 3.21
974 990 1.202348 TCCGTCTGTCTGCTACACATG 59.798 52.381 0.00 0.00 33.45 3.21
975 991 0.994995 CGTCTGTCTGCTACACATGC 59.005 55.000 0.00 0.00 33.45 4.06
976 992 0.994995 GTCTGTCTGCTACACATGCG 59.005 55.000 0.00 0.00 33.45 4.73
977 993 0.737367 TCTGTCTGCTACACATGCGC 60.737 55.000 0.00 0.00 33.45 6.09
978 994 2.017458 CTGTCTGCTACACATGCGCG 62.017 60.000 0.00 0.00 33.45 6.86
979 995 2.094659 GTCTGCTACACATGCGCGT 61.095 57.895 8.43 0.00 0.00 6.01
980 996 0.800683 GTCTGCTACACATGCGCGTA 60.801 55.000 8.43 2.40 0.00 4.42
981 997 0.525455 TCTGCTACACATGCGCGTAG 60.525 55.000 8.43 13.79 38.50 3.51
994 1010 4.470876 CGTAGCGTACCTGTGTGG 57.529 61.111 0.00 0.00 42.93 4.17
995 1011 1.804326 CGTAGCGTACCTGTGTGGC 60.804 63.158 0.00 0.00 40.22 5.01
996 1012 1.804326 GTAGCGTACCTGTGTGGCG 60.804 63.158 0.00 0.00 40.22 5.69
997 1013 3.636313 TAGCGTACCTGTGTGGCGC 62.636 63.158 0.00 0.00 44.69 6.53
1006 1022 2.977456 GTGTGGCGCACATGGACA 60.977 61.111 25.26 0.00 46.32 4.02
1007 1023 2.033911 TGTGGCGCACATGGACAT 59.966 55.556 10.83 0.00 39.62 3.06
1008 1024 2.334181 TGTGGCGCACATGGACATG 61.334 57.895 10.83 10.57 39.62 3.21
1009 1025 2.751036 TGGCGCACATGGACATGG 60.751 61.111 10.83 6.79 42.91 3.66
1010 1026 2.438254 GGCGCACATGGACATGGA 60.438 61.111 10.83 0.00 42.91 3.41
1011 1027 2.764314 GGCGCACATGGACATGGAC 61.764 63.158 10.83 6.93 42.91 4.02
1012 1028 2.039974 GCGCACATGGACATGGACA 61.040 57.895 15.94 0.00 42.91 4.02
1013 1029 1.378882 GCGCACATGGACATGGACAT 61.379 55.000 15.94 0.00 42.91 3.06
1015 1031 0.742505 GCACATGGACATGGACATGG 59.257 55.000 25.79 18.56 46.60 3.66
1016 1032 1.682702 GCACATGGACATGGACATGGA 60.683 52.381 25.79 1.10 46.60 3.41
1063 1079 1.066605 GCCTATGCATCTTGTTGGCTG 59.933 52.381 0.19 0.00 37.47 4.85
1084 1100 1.063492 TCCTCTACCATGCCGTCCTAA 60.063 52.381 0.00 0.00 0.00 2.69
1085 1101 1.760613 CCTCTACCATGCCGTCCTAAA 59.239 52.381 0.00 0.00 0.00 1.85
1095 1120 2.472934 GTCCTAAACGTTGCCGCG 59.527 61.111 0.00 0.00 37.70 6.46
1818 1870 1.270412 GCAGCCAGAGATGGAGATGAG 60.270 57.143 0.00 0.00 0.00 2.90
1937 2001 5.525745 TCATAGTAAGCTCTCTTGTCTCTCG 59.474 44.000 0.00 0.00 33.85 4.04
2077 6164 8.833231 ACATGCATGTATATTACCTGACTAAC 57.167 34.615 30.50 0.00 39.68 2.34
2095 6519 8.256611 TGACTAACACTTGATTAAATCTCAGC 57.743 34.615 0.00 0.00 0.00 4.26
2114 6538 6.940867 TCTCAGCCGACTAATATAAGAGCTAA 59.059 38.462 0.00 0.00 0.00 3.09
2724 7654 2.170166 CATTTTAACTGGGAGCTGCCA 58.830 47.619 26.78 26.78 38.95 4.92
3400 8344 4.456911 ACCAGTCAATGTTATGCAGTTCAG 59.543 41.667 0.00 0.00 0.00 3.02
3534 8478 8.472236 GCGAACAAGACAGAAAATTTTCTAAAG 58.528 33.333 28.40 20.02 45.23 1.85
3561 8528 8.903570 TGGTATTTGTAAATGCTTTAATGACG 57.096 30.769 5.61 0.00 32.50 4.35
3562 8529 7.971168 TGGTATTTGTAAATGCTTTAATGACGG 59.029 33.333 5.61 0.00 32.50 4.79
3563 8530 7.434013 GGTATTTGTAAATGCTTTAATGACGGG 59.566 37.037 5.61 0.00 32.50 5.28
3564 8531 6.576662 TTTGTAAATGCTTTAATGACGGGA 57.423 33.333 0.00 0.00 0.00 5.14
3565 8532 5.811399 TGTAAATGCTTTAATGACGGGAG 57.189 39.130 0.00 0.00 0.00 4.30
3716 8684 6.125029 AGTAGATTGCTAAGTTGGCATGAAT 58.875 36.000 15.17 5.67 39.54 2.57
3718 8686 6.630444 AGATTGCTAAGTTGGCATGAATAG 57.370 37.500 15.17 0.00 39.54 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 84 8.112183 ACCTCCAAGATAAAGACTCAATTCAAT 58.888 33.333 0.00 0.00 0.00 2.57
81 85 7.461749 ACCTCCAAGATAAAGACTCAATTCAA 58.538 34.615 0.00 0.00 0.00 2.69
96 100 6.074648 TCCAACATAACAAAACCTCCAAGAT 58.925 36.000 0.00 0.00 0.00 2.40
101 105 6.339587 TCAATCCAACATAACAAAACCTCC 57.660 37.500 0.00 0.00 0.00 4.30
150 154 3.064408 CGTGTATCTGCATGCAAGACATT 59.936 43.478 22.88 8.96 36.64 2.71
163 167 2.672874 CCATTGTCACCACGTGTATCTG 59.327 50.000 15.65 4.23 34.79 2.90
164 168 2.354704 CCCATTGTCACCACGTGTATCT 60.355 50.000 15.65 0.00 34.79 1.98
170 174 2.304761 AGAATACCCATTGTCACCACGT 59.695 45.455 0.00 0.00 0.00 4.49
204 209 9.335891 CGCAAGTTGATTACAAAAACATACATA 57.664 29.630 7.16 0.00 37.77 2.29
216 221 4.075682 TGGAAATCCGCAAGTTGATTACA 58.924 39.130 7.16 0.00 39.43 2.41
320 325 4.942761 ACAATCCTCACAAGCAACAAAT 57.057 36.364 0.00 0.00 0.00 2.32
329 334 9.685276 AACTGAATCATATAACAATCCTCACAA 57.315 29.630 0.00 0.00 0.00 3.33
333 338 9.553064 ACAGAACTGAATCATATAACAATCCTC 57.447 33.333 8.87 0.00 0.00 3.71
334 339 9.911788 AACAGAACTGAATCATATAACAATCCT 57.088 29.630 8.87 0.00 0.00 3.24
356 363 4.142945 GCAATCTCTCAACAGTGCTAACAG 60.143 45.833 0.00 0.00 0.00 3.16
392 399 1.692411 AAACAAGGCCTCAGGTTCAC 58.308 50.000 5.23 0.00 0.00 3.18
399 406 5.606348 AATGTTTACAAAACAAGGCCTCA 57.394 34.783 5.23 0.00 33.42 3.86
400 407 9.869757 ATATAAATGTTTACAAAACAAGGCCTC 57.130 29.630 5.23 0.00 33.42 4.70
413 420 9.150653 CGAGCAAAACGGTATATAAATGTTTAC 57.849 33.333 8.03 5.37 32.84 2.01
417 424 6.913873 ACGAGCAAAACGGTATATAAATGT 57.086 33.333 0.00 0.00 34.93 2.71
422 429 6.724694 AAACAACGAGCAAAACGGTATATA 57.275 33.333 0.00 0.00 34.93 0.86
497 510 9.935241 AGATGATGATACAAGTGTAATATGGAC 57.065 33.333 0.00 0.00 33.76 4.02
504 519 6.697455 GCGAAGAGATGATGATACAAGTGTAA 59.303 38.462 0.00 0.00 33.76 2.41
518 533 3.623060 GCACTAATTTGGCGAAGAGATGA 59.377 43.478 6.25 0.00 0.00 2.92
594 610 6.761312 TCTCAAACAATCCTGCAATCAAATT 58.239 32.000 0.00 0.00 0.00 1.82
675 691 5.766174 TGTAGGACAGCGGTAAATTTTTCTT 59.234 36.000 0.00 0.00 0.00 2.52
678 694 6.394025 TTTGTAGGACAGCGGTAAATTTTT 57.606 33.333 0.00 0.00 0.00 1.94
711 727 2.833631 ATTCCATCCCGAATACCGAC 57.166 50.000 0.00 0.00 41.76 4.79
712 728 3.508793 GTCTATTCCATCCCGAATACCGA 59.491 47.826 0.00 0.00 41.76 4.69
713 729 3.510360 AGTCTATTCCATCCCGAATACCG 59.490 47.826 0.00 0.00 34.35 4.02
714 730 5.392811 CGTAGTCTATTCCATCCCGAATACC 60.393 48.000 0.00 0.00 34.35 2.73
715 731 5.182760 ACGTAGTCTATTCCATCCCGAATAC 59.817 44.000 0.00 0.00 29.74 1.89
716 732 5.319453 ACGTAGTCTATTCCATCCCGAATA 58.681 41.667 0.00 0.00 29.74 1.75
717 733 4.150359 ACGTAGTCTATTCCATCCCGAAT 58.850 43.478 0.00 0.00 29.74 3.34
718 734 3.559069 ACGTAGTCTATTCCATCCCGAA 58.441 45.455 0.00 0.00 29.74 4.30
719 735 3.219176 ACGTAGTCTATTCCATCCCGA 57.781 47.619 0.00 0.00 29.74 5.14
720 736 3.552273 CCAACGTAGTCTATTCCATCCCG 60.552 52.174 0.00 0.00 45.00 5.14
721 737 3.802675 GCCAACGTAGTCTATTCCATCCC 60.803 52.174 0.00 0.00 45.00 3.85
722 738 3.391049 GCCAACGTAGTCTATTCCATCC 58.609 50.000 0.00 0.00 45.00 3.51
723 739 3.050619 CGCCAACGTAGTCTATTCCATC 58.949 50.000 0.00 0.00 45.00 3.51
724 740 2.223971 CCGCCAACGTAGTCTATTCCAT 60.224 50.000 0.00 0.00 45.00 3.41
725 741 1.135527 CCGCCAACGTAGTCTATTCCA 59.864 52.381 0.00 0.00 45.00 3.53
726 742 1.406539 TCCGCCAACGTAGTCTATTCC 59.593 52.381 0.00 0.00 45.00 3.01
727 743 2.728922 CTCCGCCAACGTAGTCTATTC 58.271 52.381 0.00 0.00 45.00 1.75
728 744 1.202382 GCTCCGCCAACGTAGTCTATT 60.202 52.381 0.00 0.00 45.00 1.73
729 745 0.384669 GCTCCGCCAACGTAGTCTAT 59.615 55.000 0.00 0.00 45.00 1.98
730 746 0.961857 TGCTCCGCCAACGTAGTCTA 60.962 55.000 0.00 0.00 45.00 2.59
731 747 1.812686 TTGCTCCGCCAACGTAGTCT 61.813 55.000 0.00 0.00 45.00 3.24
732 748 1.352156 CTTGCTCCGCCAACGTAGTC 61.352 60.000 0.00 0.00 45.00 2.59
734 750 0.949105 AACTTGCTCCGCCAACGTAG 60.949 55.000 0.00 0.00 37.70 3.51
735 751 0.947180 GAACTTGCTCCGCCAACGTA 60.947 55.000 0.00 0.00 37.70 3.57
736 752 2.203153 AACTTGCTCCGCCAACGT 60.203 55.556 0.00 0.00 37.70 3.99
737 753 2.556287 GAACTTGCTCCGCCAACG 59.444 61.111 0.00 0.00 39.67 4.10
738 754 1.452145 TTGGAACTTGCTCCGCCAAC 61.452 55.000 0.00 0.00 38.44 3.77
739 755 1.152860 TTGGAACTTGCTCCGCCAA 60.153 52.632 0.00 0.00 38.44 4.52
740 756 1.600636 CTTGGAACTTGCTCCGCCA 60.601 57.895 0.00 0.00 38.44 5.69
741 757 0.678048 ATCTTGGAACTTGCTCCGCC 60.678 55.000 0.00 0.00 38.44 6.13
742 758 0.449388 CATCTTGGAACTTGCTCCGC 59.551 55.000 0.00 0.00 38.44 5.54
743 759 2.005451 CTCATCTTGGAACTTGCTCCG 58.995 52.381 0.00 0.00 38.44 4.63
744 760 1.742268 GCTCATCTTGGAACTTGCTCC 59.258 52.381 0.00 0.00 35.88 4.70
745 761 1.742268 GGCTCATCTTGGAACTTGCTC 59.258 52.381 0.00 0.00 0.00 4.26
746 762 1.074405 TGGCTCATCTTGGAACTTGCT 59.926 47.619 0.00 0.00 0.00 3.91
747 763 1.538047 TGGCTCATCTTGGAACTTGC 58.462 50.000 0.00 0.00 0.00 4.01
748 764 4.301628 GTTTTGGCTCATCTTGGAACTTG 58.698 43.478 0.00 0.00 0.00 3.16
749 765 3.321968 GGTTTTGGCTCATCTTGGAACTT 59.678 43.478 0.00 0.00 0.00 2.66
750 766 2.893489 GGTTTTGGCTCATCTTGGAACT 59.107 45.455 0.00 0.00 0.00 3.01
751 767 2.029020 GGGTTTTGGCTCATCTTGGAAC 60.029 50.000 0.00 0.00 0.00 3.62
752 768 2.158325 AGGGTTTTGGCTCATCTTGGAA 60.158 45.455 0.00 0.00 0.00 3.53
753 769 1.428912 AGGGTTTTGGCTCATCTTGGA 59.571 47.619 0.00 0.00 0.00 3.53
754 770 1.928868 AGGGTTTTGGCTCATCTTGG 58.071 50.000 0.00 0.00 0.00 3.61
755 771 3.019564 CCTAGGGTTTTGGCTCATCTTG 58.980 50.000 0.00 0.00 0.00 3.02
756 772 2.649816 ACCTAGGGTTTTGGCTCATCTT 59.350 45.455 14.81 0.00 27.29 2.40
757 773 2.025887 CACCTAGGGTTTTGGCTCATCT 60.026 50.000 14.81 0.00 31.02 2.90
758 774 2.369394 CACCTAGGGTTTTGGCTCATC 58.631 52.381 14.81 0.00 31.02 2.92
759 775 1.005924 CCACCTAGGGTTTTGGCTCAT 59.994 52.381 14.81 0.00 31.02 2.90
760 776 0.404040 CCACCTAGGGTTTTGGCTCA 59.596 55.000 14.81 0.00 31.02 4.26
761 777 0.404426 ACCACCTAGGGTTTTGGCTC 59.596 55.000 14.81 0.00 43.89 4.70
762 778 2.564179 ACCACCTAGGGTTTTGGCT 58.436 52.632 14.81 0.06 43.89 4.75
769 785 2.176247 ATCATCGAACCACCTAGGGT 57.824 50.000 14.81 0.00 43.33 4.34
770 786 3.134804 AGAAATCATCGAACCACCTAGGG 59.865 47.826 14.81 1.73 43.89 3.53
771 787 4.408182 AGAAATCATCGAACCACCTAGG 57.592 45.455 7.41 7.41 45.67 3.02
772 788 5.065218 CCAAAGAAATCATCGAACCACCTAG 59.935 44.000 0.00 0.00 0.00 3.02
773 789 4.941263 CCAAAGAAATCATCGAACCACCTA 59.059 41.667 0.00 0.00 0.00 3.08
774 790 3.758554 CCAAAGAAATCATCGAACCACCT 59.241 43.478 0.00 0.00 0.00 4.00
775 791 3.673323 GCCAAAGAAATCATCGAACCACC 60.673 47.826 0.00 0.00 0.00 4.61
776 792 3.501950 GCCAAAGAAATCATCGAACCAC 58.498 45.455 0.00 0.00 0.00 4.16
777 793 2.491693 GGCCAAAGAAATCATCGAACCA 59.508 45.455 0.00 0.00 0.00 3.67
778 794 2.477863 CGGCCAAAGAAATCATCGAACC 60.478 50.000 2.24 0.00 0.00 3.62
779 795 2.418628 TCGGCCAAAGAAATCATCGAAC 59.581 45.455 2.24 0.00 0.00 3.95
780 796 2.677836 CTCGGCCAAAGAAATCATCGAA 59.322 45.455 2.24 0.00 0.00 3.71
781 797 2.279741 CTCGGCCAAAGAAATCATCGA 58.720 47.619 2.24 0.00 0.00 3.59
782 798 1.331756 CCTCGGCCAAAGAAATCATCG 59.668 52.381 2.24 0.00 0.00 3.84
783 799 2.643551 TCCTCGGCCAAAGAAATCATC 58.356 47.619 2.24 0.00 0.00 2.92
784 800 2.806945 TCCTCGGCCAAAGAAATCAT 57.193 45.000 2.24 0.00 0.00 2.45
785 801 2.368439 CATCCTCGGCCAAAGAAATCA 58.632 47.619 2.24 0.00 0.00 2.57
786 802 1.678101 CCATCCTCGGCCAAAGAAATC 59.322 52.381 2.24 0.00 0.00 2.17
787 803 1.005924 ACCATCCTCGGCCAAAGAAAT 59.994 47.619 2.24 0.00 0.00 2.17
788 804 0.404040 ACCATCCTCGGCCAAAGAAA 59.596 50.000 2.24 0.00 0.00 2.52
789 805 0.322456 CACCATCCTCGGCCAAAGAA 60.322 55.000 2.24 0.00 0.00 2.52
790 806 1.198094 TCACCATCCTCGGCCAAAGA 61.198 55.000 2.24 0.00 0.00 2.52
791 807 0.745845 CTCACCATCCTCGGCCAAAG 60.746 60.000 2.24 0.00 0.00 2.77
792 808 1.299648 CTCACCATCCTCGGCCAAA 59.700 57.895 2.24 0.00 0.00 3.28
793 809 2.989639 CTCACCATCCTCGGCCAA 59.010 61.111 2.24 0.00 0.00 4.52
794 810 3.785859 GCTCACCATCCTCGGCCA 61.786 66.667 2.24 0.00 0.00 5.36
795 811 3.746949 CTGCTCACCATCCTCGGCC 62.747 68.421 0.00 0.00 0.00 6.13
796 812 1.676678 TACTGCTCACCATCCTCGGC 61.677 60.000 0.00 0.00 0.00 5.54
797 813 1.043816 ATACTGCTCACCATCCTCGG 58.956 55.000 0.00 0.00 0.00 4.63
798 814 3.256879 ACATATACTGCTCACCATCCTCG 59.743 47.826 0.00 0.00 0.00 4.63
799 815 4.881019 ACATATACTGCTCACCATCCTC 57.119 45.455 0.00 0.00 0.00 3.71
800 816 4.774726 CCTACATATACTGCTCACCATCCT 59.225 45.833 0.00 0.00 0.00 3.24
801 817 4.772624 TCCTACATATACTGCTCACCATCC 59.227 45.833 0.00 0.00 0.00 3.51
802 818 5.105554 CCTCCTACATATACTGCTCACCATC 60.106 48.000 0.00 0.00 0.00 3.51
803 819 4.774726 CCTCCTACATATACTGCTCACCAT 59.225 45.833 0.00 0.00 0.00 3.55
804 820 4.141018 TCCTCCTACATATACTGCTCACCA 60.141 45.833 0.00 0.00 0.00 4.17
805 821 4.218852 GTCCTCCTACATATACTGCTCACC 59.781 50.000 0.00 0.00 0.00 4.02
806 822 4.218852 GGTCCTCCTACATATACTGCTCAC 59.781 50.000 0.00 0.00 0.00 3.51
807 823 4.141018 TGGTCCTCCTACATATACTGCTCA 60.141 45.833 0.00 0.00 34.23 4.26
808 824 4.408276 TGGTCCTCCTACATATACTGCTC 58.592 47.826 0.00 0.00 34.23 4.26
809 825 4.106502 TCTGGTCCTCCTACATATACTGCT 59.893 45.833 0.00 0.00 34.23 4.24
810 826 4.408276 TCTGGTCCTCCTACATATACTGC 58.592 47.826 0.00 0.00 34.23 4.40
811 827 5.013547 CCTCTGGTCCTCCTACATATACTG 58.986 50.000 0.00 0.00 34.23 2.74
812 828 4.920749 TCCTCTGGTCCTCCTACATATACT 59.079 45.833 0.00 0.00 34.23 2.12
813 829 5.258216 TCCTCTGGTCCTCCTACATATAC 57.742 47.826 0.00 0.00 34.23 1.47
814 830 5.281769 CCATCCTCTGGTCCTCCTACATATA 60.282 48.000 0.00 0.00 40.49 0.86
815 831 4.511841 CCATCCTCTGGTCCTCCTACATAT 60.512 50.000 0.00 0.00 40.49 1.78
816 832 3.181417 CCATCCTCTGGTCCTCCTACATA 60.181 52.174 0.00 0.00 40.49 2.29
817 833 2.427002 CCATCCTCTGGTCCTCCTACAT 60.427 54.545 0.00 0.00 40.49 2.29
818 834 1.062886 CCATCCTCTGGTCCTCCTACA 60.063 57.143 0.00 0.00 40.49 2.74
819 835 1.710816 CCATCCTCTGGTCCTCCTAC 58.289 60.000 0.00 0.00 40.49 3.18
828 844 5.834819 GTCATCGTGACACCATCCTCTGG 62.835 56.522 11.62 0.00 46.22 3.86
829 845 1.478105 TCATCGTGACACCATCCTCTG 59.522 52.381 0.00 0.00 0.00 3.35
830 846 1.478510 GTCATCGTGACACCATCCTCT 59.521 52.381 11.62 0.00 46.22 3.69
831 847 1.927895 GTCATCGTGACACCATCCTC 58.072 55.000 11.62 0.00 46.22 3.71
841 857 2.993220 CGGTTTGAGATTGTCATCGTGA 59.007 45.455 0.00 0.00 34.17 4.35
842 858 2.993220 TCGGTTTGAGATTGTCATCGTG 59.007 45.455 0.00 0.00 34.17 4.35
843 859 2.993899 GTCGGTTTGAGATTGTCATCGT 59.006 45.455 0.00 0.00 34.17 3.73
844 860 3.254060 AGTCGGTTTGAGATTGTCATCG 58.746 45.455 0.00 0.00 34.17 3.84
845 861 5.613358 AAAGTCGGTTTGAGATTGTCATC 57.387 39.130 0.00 0.00 34.17 2.92
846 862 7.687941 AATAAAGTCGGTTTGAGATTGTCAT 57.312 32.000 0.00 0.00 34.17 3.06
847 863 7.504924 AAATAAAGTCGGTTTGAGATTGTCA 57.495 32.000 0.00 0.00 0.00 3.58
848 864 8.073768 TGAAAATAAAGTCGGTTTGAGATTGTC 58.926 33.333 0.00 0.00 0.00 3.18
849 865 7.936584 TGAAAATAAAGTCGGTTTGAGATTGT 58.063 30.769 0.00 0.00 0.00 2.71
850 866 8.795786 TTGAAAATAAAGTCGGTTTGAGATTG 57.204 30.769 0.00 0.00 0.00 2.67
851 867 8.630037 ACTTGAAAATAAAGTCGGTTTGAGATT 58.370 29.630 0.00 0.00 32.36 2.40
852 868 8.166422 ACTTGAAAATAAAGTCGGTTTGAGAT 57.834 30.769 0.00 0.00 32.36 2.75
853 869 7.562454 ACTTGAAAATAAAGTCGGTTTGAGA 57.438 32.000 0.00 0.00 32.36 3.27
854 870 7.837898 GACTTGAAAATAAAGTCGGTTTGAG 57.162 36.000 0.95 0.00 42.87 3.02
875 891 1.656587 TGCCTGGTAAGTCCATGACT 58.343 50.000 0.00 0.00 45.64 3.41
876 892 2.290323 ACTTGCCTGGTAAGTCCATGAC 60.290 50.000 22.36 0.00 46.12 3.06
877 893 1.985159 ACTTGCCTGGTAAGTCCATGA 59.015 47.619 22.36 0.00 46.12 3.07
878 894 2.496899 ACTTGCCTGGTAAGTCCATG 57.503 50.000 22.36 1.32 46.12 3.66
879 895 4.332828 GTTTACTTGCCTGGTAAGTCCAT 58.667 43.478 29.55 11.31 46.12 3.41
880 896 3.746940 GTTTACTTGCCTGGTAAGTCCA 58.253 45.455 29.55 17.01 45.01 4.02
881 897 2.740447 CGTTTACTTGCCTGGTAAGTCC 59.260 50.000 29.55 18.50 39.11 3.85
882 898 3.656559 TCGTTTACTTGCCTGGTAAGTC 58.343 45.455 29.55 16.66 39.11 3.01
883 899 3.660865 CTCGTTTACTTGCCTGGTAAGT 58.339 45.455 28.83 28.83 41.07 2.24
884 900 2.415512 GCTCGTTTACTTGCCTGGTAAG 59.584 50.000 21.04 21.04 31.94 2.34
885 901 2.224329 TGCTCGTTTACTTGCCTGGTAA 60.224 45.455 0.00 0.00 0.00 2.85
886 902 1.345089 TGCTCGTTTACTTGCCTGGTA 59.655 47.619 0.00 0.00 0.00 3.25
887 903 0.107831 TGCTCGTTTACTTGCCTGGT 59.892 50.000 0.00 0.00 0.00 4.00
888 904 1.069227 GTTGCTCGTTTACTTGCCTGG 60.069 52.381 0.00 0.00 0.00 4.45
889 905 1.873591 AGTTGCTCGTTTACTTGCCTG 59.126 47.619 0.00 0.00 0.00 4.85
890 906 2.256117 AGTTGCTCGTTTACTTGCCT 57.744 45.000 0.00 0.00 0.00 4.75
891 907 2.650608 CAAGTTGCTCGTTTACTTGCC 58.349 47.619 0.00 0.00 41.36 4.52
894 910 3.002348 GCAGACAAGTTGCTCGTTTACTT 59.998 43.478 1.81 0.00 38.51 2.24
895 911 2.544267 GCAGACAAGTTGCTCGTTTACT 59.456 45.455 1.81 0.00 38.51 2.24
896 912 2.349532 GGCAGACAAGTTGCTCGTTTAC 60.350 50.000 1.81 0.00 41.27 2.01
897 913 1.871039 GGCAGACAAGTTGCTCGTTTA 59.129 47.619 1.81 0.00 41.27 2.01
898 914 0.663153 GGCAGACAAGTTGCTCGTTT 59.337 50.000 1.81 0.00 41.27 3.60
899 915 0.463654 TGGCAGACAAGTTGCTCGTT 60.464 50.000 1.81 0.00 41.27 3.85
900 916 0.463654 TTGGCAGACAAGTTGCTCGT 60.464 50.000 1.81 0.00 41.27 4.18
901 917 2.320215 TTGGCAGACAAGTTGCTCG 58.680 52.632 1.81 0.00 41.27 5.03
909 925 0.685785 TTTGGTGGCTTGGCAGACAA 60.686 50.000 9.14 9.14 41.00 3.18
910 926 1.076412 TTTGGTGGCTTGGCAGACA 60.076 52.632 0.00 0.00 34.63 3.41
911 927 1.109323 AGTTTGGTGGCTTGGCAGAC 61.109 55.000 0.00 0.00 0.00 3.51
912 928 0.396974 AAGTTTGGTGGCTTGGCAGA 60.397 50.000 0.00 0.00 0.00 4.26
913 929 0.465287 AAAGTTTGGTGGCTTGGCAG 59.535 50.000 0.00 0.00 0.00 4.85
914 930 0.177604 CAAAGTTTGGTGGCTTGGCA 59.822 50.000 7.78 0.00 0.00 4.92
915 931 0.532640 CCAAAGTTTGGTGGCTTGGC 60.533 55.000 24.17 0.00 45.93 4.52
916 932 3.684693 CCAAAGTTTGGTGGCTTGG 57.315 52.632 24.17 0.00 45.93 3.61
925 941 7.702348 GCCTATTTATAAGCACTCCAAAGTTTG 59.298 37.037 8.73 8.73 31.71 2.93
926 942 7.147897 GGCCTATTTATAAGCACTCCAAAGTTT 60.148 37.037 0.00 0.00 31.71 2.66
927 943 6.321435 GGCCTATTTATAAGCACTCCAAAGTT 59.679 38.462 0.00 0.00 31.71 2.66
928 944 5.828328 GGCCTATTTATAAGCACTCCAAAGT 59.172 40.000 0.00 0.00 35.60 2.66
929 945 6.064717 AGGCCTATTTATAAGCACTCCAAAG 58.935 40.000 1.29 0.00 0.00 2.77
930 946 6.013554 AGGCCTATTTATAAGCACTCCAAA 57.986 37.500 1.29 0.00 0.00 3.28
931 947 5.646692 AGGCCTATTTATAAGCACTCCAA 57.353 39.130 1.29 0.00 0.00 3.53
932 948 5.456186 GGAAGGCCTATTTATAAGCACTCCA 60.456 44.000 5.16 0.00 31.35 3.86
933 949 5.004448 GGAAGGCCTATTTATAAGCACTCC 58.996 45.833 5.16 0.00 0.00 3.85
934 950 4.691216 CGGAAGGCCTATTTATAAGCACTC 59.309 45.833 5.16 0.00 0.00 3.51
935 951 4.102681 ACGGAAGGCCTATTTATAAGCACT 59.897 41.667 5.16 0.00 0.00 4.40
936 952 4.386711 ACGGAAGGCCTATTTATAAGCAC 58.613 43.478 5.16 0.00 0.00 4.40
937 953 4.347000 AGACGGAAGGCCTATTTATAAGCA 59.653 41.667 5.16 0.00 43.69 3.91
938 954 4.691216 CAGACGGAAGGCCTATTTATAAGC 59.309 45.833 5.16 0.00 43.69 3.09
939 955 5.855045 ACAGACGGAAGGCCTATTTATAAG 58.145 41.667 5.16 0.00 43.69 1.73
940 956 5.601313 AGACAGACGGAAGGCCTATTTATAA 59.399 40.000 5.16 0.00 43.69 0.98
941 957 5.010719 CAGACAGACGGAAGGCCTATTTATA 59.989 44.000 5.16 0.00 43.69 0.98
942 958 3.967987 AGACAGACGGAAGGCCTATTTAT 59.032 43.478 5.16 0.00 43.69 1.40
943 959 3.132289 CAGACAGACGGAAGGCCTATTTA 59.868 47.826 5.16 0.00 43.69 1.40
944 960 2.093447 CAGACAGACGGAAGGCCTATTT 60.093 50.000 5.16 0.00 43.69 1.40
945 961 1.482593 CAGACAGACGGAAGGCCTATT 59.517 52.381 5.16 0.00 43.69 1.73
946 962 1.115467 CAGACAGACGGAAGGCCTAT 58.885 55.000 5.16 0.00 43.69 2.57
947 963 1.605058 GCAGACAGACGGAAGGCCTA 61.605 60.000 5.16 0.00 43.69 3.93
948 964 2.948720 GCAGACAGACGGAAGGCCT 61.949 63.158 0.00 0.00 43.69 5.19
949 965 1.605058 TAGCAGACAGACGGAAGGCC 61.605 60.000 0.00 0.00 43.69 5.19
950 966 0.458716 GTAGCAGACAGACGGAAGGC 60.459 60.000 0.00 0.00 42.06 4.35
951 967 0.888619 TGTAGCAGACAGACGGAAGG 59.111 55.000 0.00 0.00 32.86 3.46
952 968 1.269723 TGTGTAGCAGACAGACGGAAG 59.730 52.381 0.00 0.00 39.29 3.46
953 969 1.324383 TGTGTAGCAGACAGACGGAA 58.676 50.000 0.00 0.00 39.29 4.30
954 970 1.202348 CATGTGTAGCAGACAGACGGA 59.798 52.381 0.00 0.00 39.29 4.69
955 971 1.633561 CATGTGTAGCAGACAGACGG 58.366 55.000 0.00 0.00 39.29 4.79
956 972 0.994995 GCATGTGTAGCAGACAGACG 59.005 55.000 0.00 0.00 39.29 4.18
957 973 0.994995 CGCATGTGTAGCAGACAGAC 59.005 55.000 0.00 0.00 39.29 3.51
958 974 0.737367 GCGCATGTGTAGCAGACAGA 60.737 55.000 0.30 0.00 39.29 3.41
959 975 1.712081 GCGCATGTGTAGCAGACAG 59.288 57.895 0.30 0.00 39.29 3.51
960 976 2.094066 CGCGCATGTGTAGCAGACA 61.094 57.895 8.75 0.00 34.94 3.41
961 977 0.800683 TACGCGCATGTGTAGCAGAC 60.801 55.000 5.73 0.00 40.00 3.51
962 978 1.509004 TACGCGCATGTGTAGCAGA 59.491 52.632 5.73 0.00 40.00 4.26
963 979 4.086860 TACGCGCATGTGTAGCAG 57.913 55.556 5.73 2.50 40.00 4.24
976 992 1.804326 CCACACAGGTACGCTACGC 60.804 63.158 0.00 0.00 0.00 4.42
977 993 1.804326 GCCACACAGGTACGCTACG 60.804 63.158 0.00 0.00 40.61 3.51
978 994 1.804326 CGCCACACAGGTACGCTAC 60.804 63.158 0.00 0.00 40.61 3.58
979 995 2.569657 CGCCACACAGGTACGCTA 59.430 61.111 0.00 0.00 40.61 4.26
991 1007 2.486504 CATGTCCATGTGCGCCAC 59.513 61.111 4.18 3.72 34.23 5.01
992 1008 2.751036 CCATGTCCATGTGCGCCA 60.751 61.111 4.18 2.31 37.11 5.69
993 1009 2.438254 TCCATGTCCATGTGCGCC 60.438 61.111 4.18 0.00 37.11 6.53
994 1010 1.378882 ATGTCCATGTCCATGTGCGC 61.379 55.000 0.00 0.00 37.11 6.09
995 1011 0.379316 CATGTCCATGTCCATGTGCG 59.621 55.000 11.70 0.00 37.11 5.34
996 1012 0.742505 CCATGTCCATGTCCATGTGC 59.257 55.000 16.31 0.17 37.37 4.57
997 1013 2.294979 CTCCATGTCCATGTCCATGTG 58.705 52.381 16.31 10.38 37.37 3.21
998 1014 1.409241 GCTCCATGTCCATGTCCATGT 60.409 52.381 16.31 0.00 37.37 3.21
999 1015 1.133884 AGCTCCATGTCCATGTCCATG 60.134 52.381 12.58 12.58 38.51 3.66
1000 1016 1.133884 CAGCTCCATGTCCATGTCCAT 60.134 52.381 6.53 0.00 37.11 3.41
1001 1017 0.253894 CAGCTCCATGTCCATGTCCA 59.746 55.000 6.53 0.00 37.11 4.02
1002 1018 1.099879 GCAGCTCCATGTCCATGTCC 61.100 60.000 6.53 0.00 37.11 4.02
1003 1019 1.099879 GGCAGCTCCATGTCCATGTC 61.100 60.000 6.53 0.00 37.11 3.06
1004 1020 1.077212 GGCAGCTCCATGTCCATGT 60.077 57.895 6.53 0.00 37.11 3.21
1005 1021 1.077285 TGGCAGCTCCATGTCCATG 60.077 57.895 0.14 0.14 40.72 3.66
1006 1022 3.418687 TGGCAGCTCCATGTCCAT 58.581 55.556 1.25 0.00 40.72 3.41
1014 1030 1.033574 ACGAGTAGTATGGCAGCTCC 58.966 55.000 0.00 0.00 0.00 4.70
1015 1031 2.030981 GGTACGAGTAGTATGGCAGCTC 60.031 54.545 0.00 0.00 37.69 4.09
1016 1032 1.955080 GGTACGAGTAGTATGGCAGCT 59.045 52.381 0.00 0.00 37.69 4.24
1063 1079 1.043673 AGGACGGCATGGTAGAGGAC 61.044 60.000 0.00 0.00 0.00 3.85
1818 1870 1.812922 CATGTCCTGCTCGTGCTCC 60.813 63.158 11.19 0.00 40.48 4.70
1937 2001 5.453567 AAAGCCTTGGTTGTAACAAGATC 57.546 39.130 6.05 0.00 46.27 2.75
2066 6131 9.871238 GAGATTTAATCAAGTGTTAGTCAGGTA 57.129 33.333 7.74 0.00 0.00 3.08
2077 6164 4.872691 AGTCGGCTGAGATTTAATCAAGTG 59.127 41.667 7.74 2.80 0.00 3.16
2095 6519 6.862090 GTGTGGTTAGCTCTTATATTAGTCGG 59.138 42.308 0.00 0.00 0.00 4.79
2114 6538 4.052199 AGGCCTAAATATAAGGGTGTGGT 58.948 43.478 1.29 0.00 34.46 4.16
2724 7654 0.393077 CACCTGGTTCAACTCCGAGT 59.607 55.000 0.00 0.00 0.00 4.18
3188 8129 9.031537 ACCCTATTTCTTTTGGTAAAGGTTATG 57.968 33.333 0.00 0.00 40.93 1.90
3292 8235 1.487142 TGAACTTCCCAACAACGAGGA 59.513 47.619 0.00 0.00 0.00 3.71
3400 8344 2.094675 ACCCATCTAAACTGCATGCAC 58.905 47.619 18.46 0.00 0.00 4.57
3488 8432 7.060518 TGTTCGCATGAAATTACTGATTTTTCG 59.939 33.333 0.00 0.00 38.06 3.46
3552 8519 3.562397 GGGCACTCCCGTCATTAAA 57.438 52.632 0.00 0.00 43.94 1.52
3567 8534 1.406539 CAGACTACCAAATGCATGGGC 59.593 52.381 15.65 2.23 45.18 5.36
3568 8535 2.947652 CTCAGACTACCAAATGCATGGG 59.052 50.000 14.46 14.46 45.18 4.00
3569 8536 3.877559 TCTCAGACTACCAAATGCATGG 58.122 45.455 0.00 1.38 46.38 3.66
3570 8537 5.885230 TTTCTCAGACTACCAAATGCATG 57.115 39.130 0.00 0.00 0.00 4.06
3571 8538 7.831193 AGTTATTTCTCAGACTACCAAATGCAT 59.169 33.333 0.00 0.00 0.00 3.96
3572 8539 7.168219 AGTTATTTCTCAGACTACCAAATGCA 58.832 34.615 0.00 0.00 0.00 3.96
3573 8540 7.617041 AGTTATTTCTCAGACTACCAAATGC 57.383 36.000 0.00 0.00 0.00 3.56
3574 8541 9.877178 ACTAGTTATTTCTCAGACTACCAAATG 57.123 33.333 0.00 0.00 0.00 2.32
3576 8543 9.706691 CAACTAGTTATTTCTCAGACTACCAAA 57.293 33.333 8.04 0.00 0.00 3.28
3577 8544 9.085645 TCAACTAGTTATTTCTCAGACTACCAA 57.914 33.333 8.04 0.00 0.00 3.67
3578 8545 8.645814 TCAACTAGTTATTTCTCAGACTACCA 57.354 34.615 8.04 0.00 0.00 3.25
3716 8684 9.620259 AAAAGTTTGCCATAAACCATTTTTCTA 57.380 25.926 0.00 0.00 0.00 2.10
3779 8747 2.939103 AGTTCGCCATAAGCAACATCTC 59.061 45.455 0.00 0.00 44.04 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.