Multiple sequence alignment - TraesCS4A01G498000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G498000 chr4A 100.000 2154 0 0 1 2154 743681866 743679713 0.000000e+00 3978.0
1 TraesCS4A01G498000 chr4A 100.000 202 0 0 2486 2687 743679381 743679180 9.080000e-100 374.0
2 TraesCS4A01G498000 chr4A 94.737 228 9 3 1754 1978 716732822 716732595 4.260000e-93 351.0
3 TraesCS4A01G498000 chr6B 98.968 969 8 1 785 1751 720804732 720805700 0.000000e+00 1733.0
4 TraesCS4A01G498000 chr6B 94.575 553 12 4 246 794 720797763 720798301 0.000000e+00 839.0
5 TraesCS4A01G498000 chr6B 97.719 263 2 3 1 261 720797549 720797809 1.470000e-122 449.0
6 TraesCS4A01G498000 chr6B 94.500 200 11 0 2488 2687 720806024 720806223 2.600000e-80 309.0
7 TraesCS4A01G498000 chr6B 91.667 108 7 2 1985 2092 544667050 544666945 5.990000e-32 148.0
8 TraesCS4A01G498000 chr6B 92.233 103 8 0 1992 2094 222584110 222584008 2.160000e-31 147.0
9 TraesCS4A01G498000 chr6B 89.908 109 9 2 1991 2098 51614102 51614209 3.610000e-29 139.0
10 TraesCS4A01G498000 chrUn 96.282 1049 8 4 729 1751 162315408 162316451 0.000000e+00 1692.0
11 TraesCS4A01G498000 chrUn 95.575 452 14 3 277 727 162312978 162313424 0.000000e+00 719.0
12 TraesCS4A01G498000 chrUn 94.118 204 9 3 2486 2687 162316872 162317074 9.340000e-80 307.0
13 TraesCS4A01G498000 chrUn 91.837 196 8 2 1966 2154 162316466 162316660 1.590000e-67 267.0
14 TraesCS4A01G498000 chrUn 99.123 114 1 0 116 229 162312880 162312993 3.510000e-49 206.0
15 TraesCS4A01G498000 chrUn 100.000 67 0 0 1 67 162312815 162312881 1.010000e-24 124.0
16 TraesCS4A01G498000 chr2A 98.188 828 9 2 925 1751 62222522 62221700 0.000000e+00 1441.0
17 TraesCS4A01G498000 chr2A 94.979 478 17 4 246 721 62231145 62231617 0.000000e+00 743.0
18 TraesCS4A01G498000 chr2A 94.690 226 11 1 1754 1978 775432677 775432452 1.530000e-92 350.0
19 TraesCS4A01G498000 chr2A 94.554 202 11 0 2486 2687 62221280 62221079 2.010000e-81 313.0
20 TraesCS4A01G498000 chr2A 98.214 168 3 0 719 886 62230569 62230402 7.270000e-76 294.0
21 TraesCS4A01G498000 chr2A 96.324 136 4 1 126 261 62231057 62231191 3.480000e-54 222.0
22 TraesCS4A01G498000 chr2A 86.224 196 13 4 1966 2154 62221683 62221495 1.630000e-47 200.0
23 TraesCS4A01G498000 chr2A 97.087 103 3 0 619 721 62230999 62230897 9.890000e-40 174.0
24 TraesCS4A01G498000 chr2A 100.000 36 0 0 887 922 62222584 62222549 1.730000e-07 67.6
25 TraesCS4A01G498000 chr2A 100.000 28 0 0 91 118 62231034 62231061 5.000000e-03 52.8
26 TraesCS4A01G498000 chr1B 95.614 228 7 3 1754 1978 429009935 429009708 1.970000e-96 363.0
27 TraesCS4A01G498000 chr7A 95.946 222 6 3 1754 1972 683645747 683645968 9.150000e-95 357.0
28 TraesCS4A01G498000 chr4B 96.330 218 7 1 1756 1972 652883727 652883944 9.150000e-95 357.0
29 TraesCS4A01G498000 chr4B 95.890 219 6 2 1757 1972 647694676 647694894 4.260000e-93 351.0
30 TraesCS4A01G498000 chr6A 95.133 226 10 1 1754 1978 101900115 101899890 3.290000e-94 355.0
31 TraesCS4A01G498000 chr1A 95.909 220 8 1 1754 1972 492131201 492131420 3.290000e-94 355.0
32 TraesCS4A01G498000 chr5B 94.690 226 11 1 1754 1978 442372236 442372011 1.530000e-92 350.0
33 TraesCS4A01G498000 chr5B 93.204 103 6 1 1991 2092 292729074 292729176 1.670000e-32 150.0
34 TraesCS4A01G498000 chr5A 93.939 99 6 0 1993 2091 32837214 32837116 1.670000e-32 150.0
35 TraesCS4A01G498000 chr2B 93.878 98 6 0 1994 2091 361570485 361570388 5.990000e-32 148.0
36 TraesCS4A01G498000 chr7D 93.000 100 7 0 1995 2094 266041838 266041739 2.160000e-31 147.0
37 TraesCS4A01G498000 chr5D 93.000 100 7 0 1992 2091 424673117 424673216 2.160000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G498000 chr4A 743679180 743681866 2686 True 2176.000000 3978 100.000000 1 2687 2 chr4A.!!$R2 2686
1 TraesCS4A01G498000 chr6B 720804732 720806223 1491 False 1021.000000 1733 96.734000 785 2687 2 chr6B.!!$F3 1902
2 TraesCS4A01G498000 chr6B 720797549 720798301 752 False 644.000000 839 96.147000 1 794 2 chr6B.!!$F2 793
3 TraesCS4A01G498000 chrUn 162312815 162317074 4259 False 552.500000 1692 96.155833 1 2687 6 chrUn.!!$F1 2686
4 TraesCS4A01G498000 chr2A 62221079 62222584 1505 True 505.400000 1441 94.741500 887 2687 4 chr2A.!!$R2 1800
5 TraesCS4A01G498000 chr2A 62231034 62231617 583 False 339.266667 743 97.101000 91 721 3 chr2A.!!$F1 630
6 TraesCS4A01G498000 chr2A 62230402 62230999 597 True 234.000000 294 97.650500 619 886 2 chr2A.!!$R3 267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 319 1.542915 GCACGAGGTGTACTCAACCTA 59.457 52.381 3.46 0.0 46.98 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 3926 0.041833 TGAGGAAGAGGGAGGGAGTG 59.958 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
220 223 6.014012 GCCTACTAGTCTATGGATCCTTCTT 58.986 44.000 14.23 0.00 0.00 2.52
221 224 6.152154 GCCTACTAGTCTATGGATCCTTCTTC 59.848 46.154 14.23 1.17 0.00 2.87
222 225 6.661805 CCTACTAGTCTATGGATCCTTCTTCC 59.338 46.154 14.23 0.00 0.00 3.46
223 226 6.031964 ACTAGTCTATGGATCCTTCTTCCA 57.968 41.667 14.23 0.00 46.86 3.53
224 227 5.836358 ACTAGTCTATGGATCCTTCTTCCAC 59.164 44.000 14.23 0.80 45.71 4.02
225 228 4.624913 AGTCTATGGATCCTTCTTCCACA 58.375 43.478 14.23 0.00 45.71 4.17
226 229 4.653341 AGTCTATGGATCCTTCTTCCACAG 59.347 45.833 14.23 0.00 45.71 3.66
227 230 4.651503 GTCTATGGATCCTTCTTCCACAGA 59.348 45.833 14.23 1.75 42.94 3.41
228 231 5.306678 GTCTATGGATCCTTCTTCCACAGAT 59.693 44.000 14.23 0.00 45.79 2.90
229 232 5.907662 TCTATGGATCCTTCTTCCACAGATT 59.092 40.000 14.23 0.00 40.89 2.40
230 233 4.934797 TGGATCCTTCTTCCACAGATTT 57.065 40.909 14.23 0.00 38.35 2.17
231 234 5.261040 TGGATCCTTCTTCCACAGATTTT 57.739 39.130 14.23 0.00 38.35 1.82
232 235 5.644188 TGGATCCTTCTTCCACAGATTTTT 58.356 37.500 14.23 0.00 38.35 1.94
316 319 1.542915 GCACGAGGTGTACTCAACCTA 59.457 52.381 3.46 0.00 46.98 3.08
353 356 3.835978 TGACTGCCCTAGCTTACAAGTTA 59.164 43.478 0.00 0.00 40.80 2.24
461 465 9.705290 GTAAATGACAAATTCTAACCACCAATT 57.295 29.630 0.00 0.00 0.00 2.32
557 561 1.660560 GCAATGCGTCAGATTGGCCT 61.661 55.000 3.32 0.00 32.38 5.19
575 579 2.595386 CCTGTTGCCGTTTTAAGCATC 58.405 47.619 0.00 0.00 39.11 3.91
652 656 9.438291 CACTAGTATGATATTTTCGCCAAAAAG 57.562 33.333 0.00 0.00 40.09 2.27
1295 3391 1.959085 CACGGGCTGCAACTTCAAT 59.041 52.632 0.50 0.00 0.00 2.57
1564 3660 2.446282 CTGTAACGGCAACAACAACAC 58.554 47.619 0.00 0.00 0.00 3.32
1704 3803 9.692749 TTACATAAGATGAATAAGACGATGTCC 57.307 33.333 0.00 0.00 32.18 4.02
1751 3850 7.409026 CGTGCAGTGTACGCATTTATACTATAC 60.409 40.741 20.61 0.00 42.32 1.47
1752 3851 7.594015 GTGCAGTGTACGCATTTATACTATACT 59.406 37.037 9.48 0.00 42.32 2.12
1753 3852 8.785946 TGCAGTGTACGCATTTATACTATACTA 58.214 33.333 9.48 0.00 33.55 1.82
1754 3853 9.059485 GCAGTGTACGCATTTATACTATACTAC 57.941 37.037 9.48 0.00 0.00 2.73
1756 3855 8.446273 AGTGTACGCATTTATACTATACTACGG 58.554 37.037 9.48 0.00 0.00 4.02
1757 3856 7.693951 GTGTACGCATTTATACTATACTACGGG 59.306 40.741 0.39 0.00 0.00 5.28
1758 3857 6.199937 ACGCATTTATACTATACTACGGGG 57.800 41.667 0.00 0.00 0.00 5.73
1759 3858 5.039333 CGCATTTATACTATACTACGGGGC 58.961 45.833 0.00 0.00 0.00 5.80
1760 3859 5.354767 GCATTTATACTATACTACGGGGCC 58.645 45.833 0.00 0.00 0.00 5.80
1762 3861 5.982890 TTTATACTATACTACGGGGCCAC 57.017 43.478 4.39 0.00 0.00 5.01
1765 3864 3.600448 ACTATACTACGGGGCCACTTA 57.400 47.619 1.96 0.00 0.00 2.24
1767 3866 3.638627 ACTATACTACGGGGCCACTTAAC 59.361 47.826 1.96 0.00 0.00 2.01
1770 3869 2.539302 ACTACGGGGCCACTTAACTTA 58.461 47.619 1.96 0.00 0.00 2.24
1771 3870 2.905736 ACTACGGGGCCACTTAACTTAA 59.094 45.455 1.96 0.00 0.00 1.85
1772 3871 2.955342 ACGGGGCCACTTAACTTAAA 57.045 45.000 1.96 0.00 0.00 1.52
1773 3872 2.786777 ACGGGGCCACTTAACTTAAAG 58.213 47.619 1.96 0.00 0.00 1.85
1774 3873 2.372837 ACGGGGCCACTTAACTTAAAGA 59.627 45.455 1.96 0.00 0.00 2.52
1775 3874 3.007635 CGGGGCCACTTAACTTAAAGAG 58.992 50.000 1.96 0.00 0.00 2.85
1776 3875 3.558533 CGGGGCCACTTAACTTAAAGAGT 60.559 47.826 1.96 0.00 41.47 3.24
1778 3877 4.458295 GGGGCCACTTAACTTAAAGAGTTC 59.542 45.833 4.39 0.00 45.40 3.01
1779 3878 5.067954 GGGCCACTTAACTTAAAGAGTTCA 58.932 41.667 4.39 0.00 45.40 3.18
1780 3879 5.533528 GGGCCACTTAACTTAAAGAGTTCAA 59.466 40.000 4.39 0.00 45.40 2.69
1781 3880 6.208797 GGGCCACTTAACTTAAAGAGTTCAAT 59.791 38.462 4.39 0.00 45.40 2.57
1782 3881 7.392393 GGGCCACTTAACTTAAAGAGTTCAATA 59.608 37.037 4.39 0.00 45.40 1.90
1783 3882 8.957466 GGCCACTTAACTTAAAGAGTTCAATAT 58.043 33.333 0.00 0.00 45.40 1.28
1796 3895 7.194607 AGAGTTCAATATTATGACATTGGCG 57.805 36.000 0.00 0.00 33.77 5.69
1797 3896 6.992123 AGAGTTCAATATTATGACATTGGCGA 59.008 34.615 0.00 0.00 33.77 5.54
1798 3897 6.959361 AGTTCAATATTATGACATTGGCGAC 58.041 36.000 0.00 0.00 33.77 5.19
1799 3898 5.940192 TCAATATTATGACATTGGCGACC 57.060 39.130 0.00 0.00 33.77 4.79
1800 3899 5.620206 TCAATATTATGACATTGGCGACCT 58.380 37.500 0.00 0.00 33.77 3.85
1801 3900 6.061441 TCAATATTATGACATTGGCGACCTT 58.939 36.000 0.00 0.00 33.77 3.50
1802 3901 6.545666 TCAATATTATGACATTGGCGACCTTT 59.454 34.615 0.00 0.00 33.77 3.11
1803 3902 6.959639 ATATTATGACATTGGCGACCTTTT 57.040 33.333 0.00 0.00 0.00 2.27
1804 3903 5.659440 ATTATGACATTGGCGACCTTTTT 57.341 34.783 0.00 0.00 0.00 1.94
1824 3923 6.968263 TTTTTACCATCAAATCCTCACACA 57.032 33.333 0.00 0.00 0.00 3.72
1825 3924 6.968263 TTTTACCATCAAATCCTCACACAA 57.032 33.333 0.00 0.00 0.00 3.33
1826 3925 6.968263 TTTACCATCAAATCCTCACACAAA 57.032 33.333 0.00 0.00 0.00 2.83
1827 3926 4.853924 ACCATCAAATCCTCACACAAAC 57.146 40.909 0.00 0.00 0.00 2.93
1828 3927 4.214310 ACCATCAAATCCTCACACAAACA 58.786 39.130 0.00 0.00 0.00 2.83
1829 3928 4.037923 ACCATCAAATCCTCACACAAACAC 59.962 41.667 0.00 0.00 0.00 3.32
1830 3929 4.279169 CCATCAAATCCTCACACAAACACT 59.721 41.667 0.00 0.00 0.00 3.55
1831 3930 5.455392 CATCAAATCCTCACACAAACACTC 58.545 41.667 0.00 0.00 0.00 3.51
1832 3931 3.882888 TCAAATCCTCACACAAACACTCC 59.117 43.478 0.00 0.00 0.00 3.85
1833 3932 2.568623 ATCCTCACACAAACACTCCC 57.431 50.000 0.00 0.00 0.00 4.30
1834 3933 1.507140 TCCTCACACAAACACTCCCT 58.493 50.000 0.00 0.00 0.00 4.20
1835 3934 1.416401 TCCTCACACAAACACTCCCTC 59.584 52.381 0.00 0.00 0.00 4.30
1836 3935 1.543429 CCTCACACAAACACTCCCTCC 60.543 57.143 0.00 0.00 0.00 4.30
1837 3936 0.472471 TCACACAAACACTCCCTCCC 59.528 55.000 0.00 0.00 0.00 4.30
1838 3937 0.474184 CACACAAACACTCCCTCCCT 59.526 55.000 0.00 0.00 0.00 4.20
1839 3938 0.765510 ACACAAACACTCCCTCCCTC 59.234 55.000 0.00 0.00 0.00 4.30
1840 3939 1.059913 CACAAACACTCCCTCCCTCT 58.940 55.000 0.00 0.00 0.00 3.69
1841 3940 1.421646 CACAAACACTCCCTCCCTCTT 59.578 52.381 0.00 0.00 0.00 2.85
1842 3941 1.700186 ACAAACACTCCCTCCCTCTTC 59.300 52.381 0.00 0.00 0.00 2.87
1843 3942 1.003696 CAAACACTCCCTCCCTCTTCC 59.996 57.143 0.00 0.00 0.00 3.46
1844 3943 0.494095 AACACTCCCTCCCTCTTCCT 59.506 55.000 0.00 0.00 0.00 3.36
1845 3944 0.041982 ACACTCCCTCCCTCTTCCTC 59.958 60.000 0.00 0.00 0.00 3.71
1846 3945 0.041833 CACTCCCTCCCTCTTCCTCA 59.958 60.000 0.00 0.00 0.00 3.86
1847 3946 0.041982 ACTCCCTCCCTCTTCCTCAC 59.958 60.000 0.00 0.00 0.00 3.51
1848 3947 0.338120 CTCCCTCCCTCTTCCTCACT 59.662 60.000 0.00 0.00 0.00 3.41
1849 3948 0.336737 TCCCTCCCTCTTCCTCACTC 59.663 60.000 0.00 0.00 0.00 3.51
1850 3949 0.338120 CCCTCCCTCTTCCTCACTCT 59.662 60.000 0.00 0.00 0.00 3.24
1851 3950 1.687996 CCCTCCCTCTTCCTCACTCTC 60.688 61.905 0.00 0.00 0.00 3.20
1852 3951 1.287739 CCTCCCTCTTCCTCACTCTCT 59.712 57.143 0.00 0.00 0.00 3.10
1853 3952 2.654863 CTCCCTCTTCCTCACTCTCTC 58.345 57.143 0.00 0.00 0.00 3.20
1854 3953 2.242196 CTCCCTCTTCCTCACTCTCTCT 59.758 54.545 0.00 0.00 0.00 3.10
1855 3954 2.241176 TCCCTCTTCCTCACTCTCTCTC 59.759 54.545 0.00 0.00 0.00 3.20
1856 3955 2.654863 CCTCTTCCTCACTCTCTCTCC 58.345 57.143 0.00 0.00 0.00 3.71
1857 3956 2.654863 CTCTTCCTCACTCTCTCTCCC 58.345 57.143 0.00 0.00 0.00 4.30
1858 3957 1.286553 TCTTCCTCACTCTCTCTCCCC 59.713 57.143 0.00 0.00 0.00 4.81
1859 3958 0.336737 TTCCTCACTCTCTCTCCCCC 59.663 60.000 0.00 0.00 0.00 5.40
1860 3959 0.553862 TCCTCACTCTCTCTCCCCCT 60.554 60.000 0.00 0.00 0.00 4.79
1861 3960 0.106217 CCTCACTCTCTCTCCCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
1862 3961 0.926293 CTCACTCTCTCTCCCCCTCT 59.074 60.000 0.00 0.00 0.00 3.69
1863 3962 0.923358 TCACTCTCTCTCCCCCTCTC 59.077 60.000 0.00 0.00 0.00 3.20
1864 3963 0.106217 CACTCTCTCTCCCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
1865 3964 1.293683 ACTCTCTCTCCCCCTCTCCC 61.294 65.000 0.00 0.00 0.00 4.30
1866 3965 0.998945 CTCTCTCTCCCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
1867 3966 0.996762 TCTCTCTCCCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
1868 3967 0.998945 CTCTCTCCCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
1869 3968 0.996762 TCTCTCCCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
1870 3969 0.998945 CTCTCCCCCTCTCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
1871 3970 0.996762 TCTCCCCCTCTCCCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
1872 3971 0.998945 CTCCCCCTCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
1873 3972 0.350904 TCCCCCTCTCCCTCTCTCTA 59.649 60.000 0.00 0.00 0.00 2.43
1874 3973 1.236708 CCCCCTCTCCCTCTCTCTAA 58.763 60.000 0.00 0.00 0.00 2.10
1875 3974 1.133294 CCCCCTCTCCCTCTCTCTAAC 60.133 61.905 0.00 0.00 0.00 2.34
1876 3975 1.571457 CCCCTCTCCCTCTCTCTAACA 59.429 57.143 0.00 0.00 0.00 2.41
1877 3976 2.661718 CCCTCTCCCTCTCTCTAACAC 58.338 57.143 0.00 0.00 0.00 3.32
1878 3977 2.024846 CCCTCTCCCTCTCTCTAACACA 60.025 54.545 0.00 0.00 0.00 3.72
1879 3978 3.020984 CCTCTCCCTCTCTCTAACACAC 58.979 54.545 0.00 0.00 0.00 3.82
1880 3979 3.562393 CCTCTCCCTCTCTCTAACACACA 60.562 52.174 0.00 0.00 0.00 3.72
1881 3980 3.422796 TCTCCCTCTCTCTAACACACAC 58.577 50.000 0.00 0.00 0.00 3.82
1882 3981 3.157881 CTCCCTCTCTCTAACACACACA 58.842 50.000 0.00 0.00 0.00 3.72
1883 3982 2.891580 TCCCTCTCTCTAACACACACAC 59.108 50.000 0.00 0.00 0.00 3.82
1884 3983 2.628178 CCCTCTCTCTAACACACACACA 59.372 50.000 0.00 0.00 0.00 3.72
1885 3984 3.259374 CCCTCTCTCTAACACACACACAT 59.741 47.826 0.00 0.00 0.00 3.21
1886 3985 4.462834 CCCTCTCTCTAACACACACACATA 59.537 45.833 0.00 0.00 0.00 2.29
1887 3986 5.127845 CCCTCTCTCTAACACACACACATAT 59.872 44.000 0.00 0.00 0.00 1.78
1888 3987 6.269315 CCTCTCTCTAACACACACACATATC 58.731 44.000 0.00 0.00 0.00 1.63
1889 3988 6.208988 TCTCTCTAACACACACACATATCC 57.791 41.667 0.00 0.00 0.00 2.59
1890 3989 5.714806 TCTCTCTAACACACACACATATCCA 59.285 40.000 0.00 0.00 0.00 3.41
1891 3990 6.381133 TCTCTCTAACACACACACATATCCAT 59.619 38.462 0.00 0.00 0.00 3.41
1892 3991 6.573434 TCTCTAACACACACACATATCCATC 58.427 40.000 0.00 0.00 0.00 3.51
1893 3992 6.381133 TCTCTAACACACACACATATCCATCT 59.619 38.462 0.00 0.00 0.00 2.90
1894 3993 6.946340 TCTAACACACACACATATCCATCTT 58.054 36.000 0.00 0.00 0.00 2.40
1895 3994 8.073467 TCTAACACACACACATATCCATCTTA 57.927 34.615 0.00 0.00 0.00 2.10
1896 3995 8.704668 TCTAACACACACACATATCCATCTTAT 58.295 33.333 0.00 0.00 0.00 1.73
1897 3996 9.330063 CTAACACACACACATATCCATCTTATT 57.670 33.333 0.00 0.00 0.00 1.40
1898 3997 7.558161 ACACACACACATATCCATCTTATTG 57.442 36.000 0.00 0.00 0.00 1.90
1899 3998 6.543465 ACACACACACATATCCATCTTATTGG 59.457 38.462 0.00 0.00 38.18 3.16
1900 3999 6.016860 CACACACACATATCCATCTTATTGGG 60.017 42.308 0.00 0.00 37.37 4.12
1901 4000 6.064060 CACACACATATCCATCTTATTGGGT 58.936 40.000 0.00 0.00 37.37 4.51
1902 4001 7.147391 ACACACACATATCCATCTTATTGGGTA 60.147 37.037 0.00 0.00 36.79 3.69
1903 4002 7.173218 CACACACATATCCATCTTATTGGGTAC 59.827 40.741 0.00 0.00 35.20 3.34
1904 4003 6.368791 CACACATATCCATCTTATTGGGTACG 59.631 42.308 0.00 0.00 35.20 3.67
1905 4004 5.874810 CACATATCCATCTTATTGGGTACGG 59.125 44.000 0.00 0.00 35.20 4.02
1906 4005 5.045869 ACATATCCATCTTATTGGGTACGGG 60.046 44.000 0.00 0.00 35.20 5.28
1907 4006 3.049108 TCCATCTTATTGGGTACGGGA 57.951 47.619 0.00 0.00 37.37 5.14
1908 4007 3.593942 TCCATCTTATTGGGTACGGGAT 58.406 45.455 0.00 0.00 37.37 3.85
1909 4008 3.581332 TCCATCTTATTGGGTACGGGATC 59.419 47.826 0.00 0.00 37.37 3.36
1910 4009 3.326588 CCATCTTATTGGGTACGGGATCA 59.673 47.826 0.00 0.00 32.80 2.92
1911 4010 4.019321 CCATCTTATTGGGTACGGGATCAT 60.019 45.833 0.00 0.00 32.80 2.45
1912 4011 5.188948 CCATCTTATTGGGTACGGGATCATA 59.811 44.000 0.00 0.00 32.80 2.15
1913 4012 6.296202 CCATCTTATTGGGTACGGGATCATAA 60.296 42.308 0.00 0.00 32.80 1.90
1914 4013 6.945636 TCTTATTGGGTACGGGATCATAAT 57.054 37.500 0.00 0.00 0.00 1.28
1915 4014 6.942976 TCTTATTGGGTACGGGATCATAATC 58.057 40.000 0.00 0.00 0.00 1.75
1930 4029 7.950236 GGATCATAATCCGTCTATTTAACACG 58.050 38.462 0.00 0.00 42.16 4.49
1931 4030 6.758593 TCATAATCCGTCTATTTAACACGC 57.241 37.500 0.00 0.00 32.03 5.34
1932 4031 6.274579 TCATAATCCGTCTATTTAACACGCA 58.725 36.000 0.00 0.00 32.03 5.24
1933 4032 4.852609 AATCCGTCTATTTAACACGCAC 57.147 40.909 0.00 0.00 32.03 5.34
1934 4033 3.300852 TCCGTCTATTTAACACGCACA 57.699 42.857 0.00 0.00 32.03 4.57
1935 4034 2.988493 TCCGTCTATTTAACACGCACAC 59.012 45.455 0.00 0.00 32.03 3.82
1937 4036 2.754478 GTCTATTTAACACGCACACGC 58.246 47.619 0.00 0.00 45.53 5.34
1938 4037 2.410730 GTCTATTTAACACGCACACGCT 59.589 45.455 0.00 0.00 45.53 5.07
1939 4038 3.609373 GTCTATTTAACACGCACACGCTA 59.391 43.478 0.00 0.00 45.53 4.26
1940 4039 3.855379 TCTATTTAACACGCACACGCTAG 59.145 43.478 0.00 0.00 45.53 3.42
1941 4040 1.855513 TTTAACACGCACACGCTAGT 58.144 45.000 0.00 0.00 45.53 2.57
1955 4054 5.022335 CACGCTAGTGCATAACAATATGG 57.978 43.478 2.40 0.00 41.94 2.74
1956 4055 4.749598 CACGCTAGTGCATAACAATATGGA 59.250 41.667 2.40 0.00 41.94 3.41
1957 4056 5.409520 CACGCTAGTGCATAACAATATGGAT 59.590 40.000 2.40 0.00 41.20 3.41
1958 4057 5.997746 ACGCTAGTGCATAACAATATGGATT 59.002 36.000 2.40 0.00 41.20 3.01
1959 4058 7.117667 CACGCTAGTGCATAACAATATGGATTA 59.882 37.037 2.40 0.00 41.20 1.75
1960 4059 7.824289 ACGCTAGTGCATAACAATATGGATTAT 59.176 33.333 2.40 0.00 41.20 1.28
1961 4060 8.118607 CGCTAGTGCATAACAATATGGATTATG 58.881 37.037 0.00 8.50 41.20 1.90
1962 4061 8.950210 GCTAGTGCATAACAATATGGATTATGT 58.050 33.333 12.17 0.00 41.20 2.29
1964 4063 8.696043 AGTGCATAACAATATGGATTATGTGT 57.304 30.769 12.17 0.00 41.20 3.72
1965 4064 9.791801 AGTGCATAACAATATGGATTATGTGTA 57.208 29.630 12.17 2.42 41.20 2.90
2008 4107 7.201705 CCTCAAATTAAATACTCCCTCCGTTTC 60.202 40.741 0.00 0.00 0.00 2.78
2077 4176 5.748592 ACAAAGTTGAGTCGTCTATTTTGC 58.251 37.500 0.00 0.00 38.10 3.68
2572 4678 4.129380 CGCAATCTGATTCTCCACCAATA 58.871 43.478 0.00 0.00 0.00 1.90
2618 4725 1.268896 CGTTATATCGTGTGACCGGCT 60.269 52.381 0.00 0.00 0.00 5.52
2674 4781 2.288666 GACTGAATCAGCCGCCAAATA 58.711 47.619 10.62 0.00 34.37 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 182 0.394352 GGCGGTCAGTCCATGGAAAT 60.394 55.000 18.20 5.31 35.57 2.17
248 251 6.099557 AGTCCATGGAAAAATCTGTGGAAAAA 59.900 34.615 18.20 0.00 37.48 1.94
249 252 5.602145 AGTCCATGGAAAAATCTGTGGAAAA 59.398 36.000 18.20 0.00 37.48 2.29
250 253 5.147032 AGTCCATGGAAAAATCTGTGGAAA 58.853 37.500 18.20 0.00 37.48 3.13
251 254 4.739793 AGTCCATGGAAAAATCTGTGGAA 58.260 39.130 18.20 0.00 37.48 3.53
316 319 3.525537 GCAGTCACATATGTACAGCTGT 58.474 45.455 25.12 25.12 0.00 4.40
353 356 7.923414 AAGATACGAAGATTTAAGCTGGTTT 57.077 32.000 0.00 0.00 0.00 3.27
461 465 0.945099 TTCGTTGCCGTGTTGCATTA 59.055 45.000 0.00 0.00 41.70 1.90
462 466 0.101399 TTTCGTTGCCGTGTTGCATT 59.899 45.000 0.00 0.00 41.70 3.56
463 467 0.317770 CTTTCGTTGCCGTGTTGCAT 60.318 50.000 0.00 0.00 41.70 3.96
464 468 1.063327 CTTTCGTTGCCGTGTTGCA 59.937 52.632 0.00 0.00 40.07 4.08
518 522 5.734855 TGCGAGGAAATTAAATCTAGCAC 57.265 39.130 0.00 0.00 34.06 4.40
557 561 2.030363 CAGGATGCTTAAAACGGCAACA 60.030 45.455 0.00 0.00 41.90 3.33
575 579 2.158957 TCAGCGGATAAAGTTAGGCAGG 60.159 50.000 0.00 0.00 0.00 4.85
652 656 7.102847 AGTAAGAGAAATCACAGCTACTACC 57.897 40.000 0.00 0.00 0.00 3.18
769 2841 1.535462 GTGTAGTTCCATGCACCACAC 59.465 52.381 8.48 8.48 30.45 3.82
1295 3391 4.020617 CAGCTCCCGGAGTTGCCA 62.021 66.667 17.34 0.00 34.48 4.92
1564 3660 1.209747 GGCAGAAGGTAACCTGGTAGG 59.790 57.143 0.00 0.00 42.49 3.18
1704 3803 2.159517 GCACGGACAGCCTTATTTTCAG 60.160 50.000 0.00 0.00 0.00 3.02
1751 3850 3.615224 TTAAGTTAAGTGGCCCCGTAG 57.385 47.619 0.00 0.00 0.00 3.51
1752 3851 3.582208 TCTTTAAGTTAAGTGGCCCCGTA 59.418 43.478 0.00 0.00 0.00 4.02
1753 3852 2.372837 TCTTTAAGTTAAGTGGCCCCGT 59.627 45.455 0.00 0.00 0.00 5.28
1754 3853 3.007635 CTCTTTAAGTTAAGTGGCCCCG 58.992 50.000 0.00 0.00 0.00 5.73
1770 3869 8.131100 CGCCAATGTCATAATATTGAACTCTTT 58.869 33.333 0.00 0.00 36.41 2.52
1771 3870 7.498900 TCGCCAATGTCATAATATTGAACTCTT 59.501 33.333 0.00 0.00 36.41 2.85
1772 3871 6.992123 TCGCCAATGTCATAATATTGAACTCT 59.008 34.615 0.00 0.00 36.41 3.24
1773 3872 7.072030 GTCGCCAATGTCATAATATTGAACTC 58.928 38.462 0.00 0.00 36.41 3.01
1774 3873 6.017109 GGTCGCCAATGTCATAATATTGAACT 60.017 38.462 0.00 0.00 36.41 3.01
1775 3874 6.017109 AGGTCGCCAATGTCATAATATTGAAC 60.017 38.462 0.00 0.00 36.41 3.18
1776 3875 6.061441 AGGTCGCCAATGTCATAATATTGAA 58.939 36.000 0.00 0.00 36.41 2.69
1777 3876 5.620206 AGGTCGCCAATGTCATAATATTGA 58.380 37.500 0.00 0.00 36.41 2.57
1778 3877 5.947228 AGGTCGCCAATGTCATAATATTG 57.053 39.130 0.00 0.00 34.68 1.90
1779 3878 6.959639 AAAGGTCGCCAATGTCATAATATT 57.040 33.333 0.00 0.00 0.00 1.28
1780 3879 6.959639 AAAAGGTCGCCAATGTCATAATAT 57.040 33.333 0.00 0.00 0.00 1.28
1781 3880 6.767524 AAAAAGGTCGCCAATGTCATAATA 57.232 33.333 0.00 0.00 0.00 0.98
1782 3881 5.659440 AAAAAGGTCGCCAATGTCATAAT 57.341 34.783 0.00 0.00 0.00 1.28
1801 3900 6.968263 TGTGTGAGGATTTGATGGTAAAAA 57.032 33.333 0.00 0.00 0.00 1.94
1802 3901 6.968263 TTGTGTGAGGATTTGATGGTAAAA 57.032 33.333 0.00 0.00 0.00 1.52
1803 3902 6.322456 TGTTTGTGTGAGGATTTGATGGTAAA 59.678 34.615 0.00 0.00 0.00 2.01
1804 3903 5.830457 TGTTTGTGTGAGGATTTGATGGTAA 59.170 36.000 0.00 0.00 0.00 2.85
1805 3904 5.240623 GTGTTTGTGTGAGGATTTGATGGTA 59.759 40.000 0.00 0.00 0.00 3.25
1806 3905 4.037923 GTGTTTGTGTGAGGATTTGATGGT 59.962 41.667 0.00 0.00 0.00 3.55
1807 3906 4.279169 AGTGTTTGTGTGAGGATTTGATGG 59.721 41.667 0.00 0.00 0.00 3.51
1808 3907 5.443185 AGTGTTTGTGTGAGGATTTGATG 57.557 39.130 0.00 0.00 0.00 3.07
1809 3908 4.520492 GGAGTGTTTGTGTGAGGATTTGAT 59.480 41.667 0.00 0.00 0.00 2.57
1810 3909 3.882888 GGAGTGTTTGTGTGAGGATTTGA 59.117 43.478 0.00 0.00 0.00 2.69
1811 3910 3.004734 GGGAGTGTTTGTGTGAGGATTTG 59.995 47.826 0.00 0.00 0.00 2.32
1812 3911 3.117512 AGGGAGTGTTTGTGTGAGGATTT 60.118 43.478 0.00 0.00 0.00 2.17
1813 3912 2.443255 AGGGAGTGTTTGTGTGAGGATT 59.557 45.455 0.00 0.00 0.00 3.01
1814 3913 2.039084 GAGGGAGTGTTTGTGTGAGGAT 59.961 50.000 0.00 0.00 0.00 3.24
1815 3914 1.416401 GAGGGAGTGTTTGTGTGAGGA 59.584 52.381 0.00 0.00 0.00 3.71
1816 3915 1.543429 GGAGGGAGTGTTTGTGTGAGG 60.543 57.143 0.00 0.00 0.00 3.86
1817 3916 1.543429 GGGAGGGAGTGTTTGTGTGAG 60.543 57.143 0.00 0.00 0.00 3.51
1818 3917 0.472471 GGGAGGGAGTGTTTGTGTGA 59.528 55.000 0.00 0.00 0.00 3.58
1819 3918 0.474184 AGGGAGGGAGTGTTTGTGTG 59.526 55.000 0.00 0.00 0.00 3.82
1820 3919 0.765510 GAGGGAGGGAGTGTTTGTGT 59.234 55.000 0.00 0.00 0.00 3.72
1821 3920 1.059913 AGAGGGAGGGAGTGTTTGTG 58.940 55.000 0.00 0.00 0.00 3.33
1822 3921 1.700186 GAAGAGGGAGGGAGTGTTTGT 59.300 52.381 0.00 0.00 0.00 2.83
1823 3922 1.003696 GGAAGAGGGAGGGAGTGTTTG 59.996 57.143 0.00 0.00 0.00 2.93
1824 3923 1.132365 AGGAAGAGGGAGGGAGTGTTT 60.132 52.381 0.00 0.00 0.00 2.83
1825 3924 0.494095 AGGAAGAGGGAGGGAGTGTT 59.506 55.000 0.00 0.00 0.00 3.32
1826 3925 0.041982 GAGGAAGAGGGAGGGAGTGT 59.958 60.000 0.00 0.00 0.00 3.55
1827 3926 0.041833 TGAGGAAGAGGGAGGGAGTG 59.958 60.000 0.00 0.00 0.00 3.51
1828 3927 0.041982 GTGAGGAAGAGGGAGGGAGT 59.958 60.000 0.00 0.00 0.00 3.85
1829 3928 0.338120 AGTGAGGAAGAGGGAGGGAG 59.662 60.000 0.00 0.00 0.00 4.30
1830 3929 0.336737 GAGTGAGGAAGAGGGAGGGA 59.663 60.000 0.00 0.00 0.00 4.20
1831 3930 0.338120 AGAGTGAGGAAGAGGGAGGG 59.662 60.000 0.00 0.00 0.00 4.30
1832 3931 1.287739 AGAGAGTGAGGAAGAGGGAGG 59.712 57.143 0.00 0.00 0.00 4.30
1833 3932 2.242196 AGAGAGAGTGAGGAAGAGGGAG 59.758 54.545 0.00 0.00 0.00 4.30
1834 3933 2.241176 GAGAGAGAGTGAGGAAGAGGGA 59.759 54.545 0.00 0.00 0.00 4.20
1835 3934 2.654863 GAGAGAGAGTGAGGAAGAGGG 58.345 57.143 0.00 0.00 0.00 4.30
1836 3935 2.654863 GGAGAGAGAGTGAGGAAGAGG 58.345 57.143 0.00 0.00 0.00 3.69
1837 3936 2.654863 GGGAGAGAGAGTGAGGAAGAG 58.345 57.143 0.00 0.00 0.00 2.85
1838 3937 1.286553 GGGGAGAGAGAGTGAGGAAGA 59.713 57.143 0.00 0.00 0.00 2.87
1839 3938 1.687996 GGGGGAGAGAGAGTGAGGAAG 60.688 61.905 0.00 0.00 0.00 3.46
1840 3939 0.336737 GGGGGAGAGAGAGTGAGGAA 59.663 60.000 0.00 0.00 0.00 3.36
1841 3940 0.553862 AGGGGGAGAGAGAGTGAGGA 60.554 60.000 0.00 0.00 0.00 3.71
1842 3941 0.106217 GAGGGGGAGAGAGAGTGAGG 60.106 65.000 0.00 0.00 0.00 3.86
1843 3942 0.926293 AGAGGGGGAGAGAGAGTGAG 59.074 60.000 0.00 0.00 0.00 3.51
1844 3943 0.923358 GAGAGGGGGAGAGAGAGTGA 59.077 60.000 0.00 0.00 0.00 3.41
1845 3944 0.106217 GGAGAGGGGGAGAGAGAGTG 60.106 65.000 0.00 0.00 0.00 3.51
1846 3945 1.293683 GGGAGAGGGGGAGAGAGAGT 61.294 65.000 0.00 0.00 0.00 3.24
1847 3946 0.998945 AGGGAGAGGGGGAGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
1848 3947 0.996762 GAGGGAGAGGGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
1849 3948 0.998945 AGAGGGAGAGGGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
1850 3949 0.996762 GAGAGGGAGAGGGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
1851 3950 0.998945 AGAGAGGGAGAGGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
1852 3951 0.996762 GAGAGAGGGAGAGGGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
1853 3952 0.998945 AGAGAGAGGGAGAGGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
1854 3953 0.350904 TAGAGAGAGGGAGAGGGGGA 59.649 60.000 0.00 0.00 0.00 4.81
1855 3954 1.133294 GTTAGAGAGAGGGAGAGGGGG 60.133 61.905 0.00 0.00 0.00 5.40
1856 3955 1.571457 TGTTAGAGAGAGGGAGAGGGG 59.429 57.143 0.00 0.00 0.00 4.79
1857 3956 2.024846 TGTGTTAGAGAGAGGGAGAGGG 60.025 54.545 0.00 0.00 0.00 4.30
1858 3957 3.020984 GTGTGTTAGAGAGAGGGAGAGG 58.979 54.545 0.00 0.00 0.00 3.69
1859 3958 3.442273 GTGTGTGTTAGAGAGAGGGAGAG 59.558 52.174 0.00 0.00 0.00 3.20
1860 3959 3.181433 TGTGTGTGTTAGAGAGAGGGAGA 60.181 47.826 0.00 0.00 0.00 3.71
1861 3960 3.057174 GTGTGTGTGTTAGAGAGAGGGAG 60.057 52.174 0.00 0.00 0.00 4.30
1862 3961 2.891580 GTGTGTGTGTTAGAGAGAGGGA 59.108 50.000 0.00 0.00 0.00 4.20
1863 3962 2.628178 TGTGTGTGTGTTAGAGAGAGGG 59.372 50.000 0.00 0.00 0.00 4.30
1864 3963 4.527509 ATGTGTGTGTGTTAGAGAGAGG 57.472 45.455 0.00 0.00 0.00 3.69
1865 3964 6.127619 TGGATATGTGTGTGTGTTAGAGAGAG 60.128 42.308 0.00 0.00 0.00 3.20
1866 3965 5.714806 TGGATATGTGTGTGTGTTAGAGAGA 59.285 40.000 0.00 0.00 0.00 3.10
1867 3966 5.965922 TGGATATGTGTGTGTGTTAGAGAG 58.034 41.667 0.00 0.00 0.00 3.20
1868 3967 5.993748 TGGATATGTGTGTGTGTTAGAGA 57.006 39.130 0.00 0.00 0.00 3.10
1869 3968 6.577103 AGATGGATATGTGTGTGTGTTAGAG 58.423 40.000 0.00 0.00 0.00 2.43
1870 3969 6.544928 AGATGGATATGTGTGTGTGTTAGA 57.455 37.500 0.00 0.00 0.00 2.10
1871 3970 8.893219 ATAAGATGGATATGTGTGTGTGTTAG 57.107 34.615 0.00 0.00 0.00 2.34
1872 3971 9.108284 CAATAAGATGGATATGTGTGTGTGTTA 57.892 33.333 0.00 0.00 0.00 2.41
1873 3972 7.067372 CCAATAAGATGGATATGTGTGTGTGTT 59.933 37.037 0.00 0.00 43.54 3.32
1874 3973 6.543465 CCAATAAGATGGATATGTGTGTGTGT 59.457 38.462 0.00 0.00 43.54 3.72
1875 3974 6.016860 CCCAATAAGATGGATATGTGTGTGTG 60.017 42.308 0.00 0.00 43.54 3.82
1876 3975 6.064060 CCCAATAAGATGGATATGTGTGTGT 58.936 40.000 0.00 0.00 43.54 3.72
1877 3976 6.064060 ACCCAATAAGATGGATATGTGTGTG 58.936 40.000 0.00 0.00 43.54 3.82
1878 3977 6.266131 ACCCAATAAGATGGATATGTGTGT 57.734 37.500 0.00 0.00 43.54 3.72
1879 3978 6.368791 CGTACCCAATAAGATGGATATGTGTG 59.631 42.308 0.00 0.00 43.54 3.82
1880 3979 6.464222 CGTACCCAATAAGATGGATATGTGT 58.536 40.000 0.00 0.00 43.54 3.72
1881 3980 5.874810 CCGTACCCAATAAGATGGATATGTG 59.125 44.000 0.00 0.00 43.54 3.21
1882 3981 5.045869 CCCGTACCCAATAAGATGGATATGT 60.046 44.000 0.00 0.00 43.54 2.29
1883 3982 5.188948 TCCCGTACCCAATAAGATGGATATG 59.811 44.000 0.00 0.00 43.54 1.78
1884 3983 5.347124 TCCCGTACCCAATAAGATGGATAT 58.653 41.667 0.00 0.00 43.54 1.63
1885 3984 4.754311 TCCCGTACCCAATAAGATGGATA 58.246 43.478 0.00 0.00 43.54 2.59
1886 3985 3.593942 TCCCGTACCCAATAAGATGGAT 58.406 45.455 0.00 0.00 43.54 3.41
1887 3986 3.049108 TCCCGTACCCAATAAGATGGA 57.951 47.619 0.00 0.00 43.54 3.41
1888 3987 3.326588 TGATCCCGTACCCAATAAGATGG 59.673 47.826 0.00 0.00 40.35 3.51
1889 3988 4.617253 TGATCCCGTACCCAATAAGATG 57.383 45.455 0.00 0.00 0.00 2.90
1890 3989 6.945636 TTATGATCCCGTACCCAATAAGAT 57.054 37.500 0.00 0.00 0.00 2.40
1891 3990 6.070424 GGATTATGATCCCGTACCCAATAAGA 60.070 42.308 5.16 0.00 45.21 2.10
1892 3991 6.113411 GGATTATGATCCCGTACCCAATAAG 58.887 44.000 5.16 0.00 45.21 1.73
1893 3992 6.057321 GGATTATGATCCCGTACCCAATAA 57.943 41.667 5.16 0.00 45.21 1.40
1894 3993 5.687166 GGATTATGATCCCGTACCCAATA 57.313 43.478 5.16 0.00 45.21 1.90
1895 3994 4.569719 GGATTATGATCCCGTACCCAAT 57.430 45.455 5.16 0.00 45.21 3.16
1906 4005 7.115805 TGCGTGTTAAATAGACGGATTATGATC 59.884 37.037 0.00 0.00 33.68 2.92
1907 4006 6.926826 TGCGTGTTAAATAGACGGATTATGAT 59.073 34.615 0.00 0.00 33.68 2.45
1908 4007 6.199531 GTGCGTGTTAAATAGACGGATTATGA 59.800 38.462 0.00 0.00 35.84 2.15
1909 4008 6.019398 TGTGCGTGTTAAATAGACGGATTATG 60.019 38.462 0.00 0.00 35.84 1.90
1910 4009 6.019318 GTGTGCGTGTTAAATAGACGGATTAT 60.019 38.462 0.00 0.00 35.84 1.28
1911 4010 5.289193 GTGTGCGTGTTAAATAGACGGATTA 59.711 40.000 0.00 0.00 35.84 1.75
1912 4011 4.092383 GTGTGCGTGTTAAATAGACGGATT 59.908 41.667 0.00 0.00 35.84 3.01
1913 4012 3.615496 GTGTGCGTGTTAAATAGACGGAT 59.385 43.478 0.00 0.00 35.84 4.18
1914 4013 2.988493 GTGTGCGTGTTAAATAGACGGA 59.012 45.455 0.00 0.00 33.68 4.69
1915 4014 2.222420 CGTGTGCGTGTTAAATAGACGG 60.222 50.000 0.00 0.00 33.68 4.79
1916 4015 2.778641 GCGTGTGCGTGTTAAATAGACG 60.779 50.000 0.00 0.00 40.81 4.18
1917 4016 2.754478 GCGTGTGCGTGTTAAATAGAC 58.246 47.619 0.00 0.00 40.81 2.59
1931 4030 5.434706 CATATTGTTATGCACTAGCGTGTG 58.565 41.667 7.59 7.59 46.23 3.82
1932 4031 4.511454 CCATATTGTTATGCACTAGCGTGT 59.489 41.667 0.00 0.00 46.23 4.49
1933 4032 4.749598 TCCATATTGTTATGCACTAGCGTG 59.250 41.667 0.00 0.00 46.23 5.34
1934 4033 4.956085 TCCATATTGTTATGCACTAGCGT 58.044 39.130 0.00 0.00 46.23 5.07
1935 4034 6.486253 AATCCATATTGTTATGCACTAGCG 57.514 37.500 0.00 0.00 46.23 4.26
1936 4035 8.950210 ACATAATCCATATTGTTATGCACTAGC 58.050 33.333 0.00 0.00 38.67 3.42
1938 4037 9.791801 ACACATAATCCATATTGTTATGCACTA 57.208 29.630 0.00 0.00 38.67 2.74
1939 4038 8.696043 ACACATAATCCATATTGTTATGCACT 57.304 30.769 0.00 0.00 38.67 4.40
1957 4056 8.537016 GGGCTCTGGTACATATAATACACATAA 58.463 37.037 0.00 0.00 38.20 1.90
1958 4057 7.899172 AGGGCTCTGGTACATATAATACACATA 59.101 37.037 0.00 0.00 38.20 2.29
1959 4058 6.730977 AGGGCTCTGGTACATATAATACACAT 59.269 38.462 0.00 0.00 38.20 3.21
1960 4059 6.082031 AGGGCTCTGGTACATATAATACACA 58.918 40.000 0.00 0.00 38.20 3.72
1961 4060 6.210784 TGAGGGCTCTGGTACATATAATACAC 59.789 42.308 0.00 0.00 38.20 2.90
1962 4061 6.319715 TGAGGGCTCTGGTACATATAATACA 58.680 40.000 0.00 0.00 38.20 2.29
1963 4062 6.852420 TGAGGGCTCTGGTACATATAATAC 57.148 41.667 0.00 0.00 38.20 1.89
1964 4063 7.865530 TTTGAGGGCTCTGGTACATATAATA 57.134 36.000 0.00 0.00 38.20 0.98
1965 4064 6.763715 TTTGAGGGCTCTGGTACATATAAT 57.236 37.500 0.00 0.00 38.20 1.28
1966 4065 6.763715 ATTTGAGGGCTCTGGTACATATAA 57.236 37.500 0.00 0.00 38.20 0.98
1967 4066 6.763715 AATTTGAGGGCTCTGGTACATATA 57.236 37.500 0.00 0.00 38.20 0.86
1968 4067 5.653255 AATTTGAGGGCTCTGGTACATAT 57.347 39.130 0.00 0.00 38.20 1.78
2077 4176 4.501571 CCATAGAACATACTCCCTCCGTTG 60.502 50.000 0.00 0.00 0.00 4.10
2572 4678 1.519408 CGAAATTGGTGGGAACTCGT 58.481 50.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.