Multiple sequence alignment - TraesCS4A01G497300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G497300 chr4A 100.000 3139 0 0 1 3139 743345078 743348216 0.000000e+00 5797.0
1 TraesCS4A01G497300 chr4A 92.258 1550 106 7 583 2128 744013858 744012319 0.000000e+00 2185.0
2 TraesCS4A01G497300 chr4A 86.658 1529 178 15 714 2232 744032131 744030619 0.000000e+00 1670.0
3 TraesCS4A01G497300 chr4A 86.580 1535 174 16 707 2229 744416220 744417734 0.000000e+00 1664.0
4 TraesCS4A01G497300 chr4A 83.252 1851 230 47 714 2516 744380089 744378271 0.000000e+00 1628.0
5 TraesCS4A01G497300 chr4A 86.987 1437 178 8 716 2146 743675046 743676479 0.000000e+00 1609.0
6 TraesCS4A01G497300 chr4A 89.896 386 30 4 183 560 744014629 744014245 3.640000e-134 488.0
7 TraesCS4A01G497300 chr4A 92.424 66 5 0 272 337 684585542 684585477 9.270000e-16 95.3
8 TraesCS4A01G497300 chr4A 86.667 75 10 0 274 348 471931332 471931258 2.010000e-12 84.2
9 TraesCS4A01G497300 chr4A 93.617 47 3 0 111 157 744380512 744380466 1.560000e-08 71.3
10 TraesCS4A01G497300 chr7A 94.482 1649 76 7 562 2209 633861 635495 0.000000e+00 2527.0
11 TraesCS4A01G497300 chr7A 83.433 1847 232 38 714 2511 330935 332756 0.000000e+00 1648.0
12 TraesCS4A01G497300 chr7A 85.822 529 36 12 44 560 623343 623844 2.770000e-145 525.0
13 TraesCS4A01G497300 chr7A 85.845 219 13 3 2303 2521 635530 635730 1.900000e-52 217.0
14 TraesCS4A01G497300 chr7A 87.097 93 9 2 112 202 330544 330635 5.540000e-18 102.0
15 TraesCS4A01G497300 chr7D 95.276 1376 56 5 836 2204 1236141 1234768 0.000000e+00 2172.0
16 TraesCS4A01G497300 chr7D 84.733 524 46 15 57 560 1237395 1236886 7.820000e-136 494.0
17 TraesCS4A01G497300 chr7D 89.130 322 30 4 2822 3139 1234763 1234443 2.270000e-106 396.0
18 TraesCS4A01G497300 chr7D 89.767 215 18 4 562 774 1236342 1236130 3.990000e-69 272.0
19 TraesCS4A01G497300 chr7D 92.683 41 2 1 764 804 105685799 105685838 1.220000e-04 58.4
20 TraesCS4A01G497300 chrUn 95.594 1271 53 3 868 2136 51384670 51385939 0.000000e+00 2034.0
21 TraesCS4A01G497300 chrUn 85.633 529 38 12 44 560 51390527 51391029 3.590000e-144 521.0
22 TraesCS4A01G497300 chr3D 82.963 1350 213 10 729 2077 19013989 19015322 0.000000e+00 1203.0
23 TraesCS4A01G497300 chr3A 83.168 1307 206 7 767 2073 26489392 26490684 0.000000e+00 1182.0
24 TraesCS4A01G497300 chr3B 80.816 1470 225 31 767 2232 30067392 30065976 0.000000e+00 1099.0
25 TraesCS4A01G497300 chr3B 97.619 42 1 0 767 808 29864275 29864316 4.340000e-09 73.1
26 TraesCS4A01G497300 chr3B 97.619 42 1 0 767 808 30255233 30255274 4.340000e-09 73.1
27 TraesCS4A01G497300 chr2A 89.535 86 9 0 274 359 30572373 30572288 3.310000e-20 110.0
28 TraesCS4A01G497300 chr1B 83.333 84 14 0 271 354 174468117 174468200 9.330000e-11 78.7
29 TraesCS4A01G497300 chr4B 93.878 49 3 0 294 342 147367848 147367896 1.210000e-09 75.0
30 TraesCS4A01G497300 chr2B 90.566 53 4 1 295 347 583063714 583063765 5.620000e-08 69.4
31 TraesCS4A01G497300 chr2B 83.562 73 11 1 271 342 139360285 139360357 2.020000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G497300 chr4A 743345078 743348216 3138 False 5797.00 5797 100.0000 1 3139 1 chr4A.!!$F1 3138
1 TraesCS4A01G497300 chr4A 744030619 744032131 1512 True 1670.00 1670 86.6580 714 2232 1 chr4A.!!$R3 1518
2 TraesCS4A01G497300 chr4A 744416220 744417734 1514 False 1664.00 1664 86.5800 707 2229 1 chr4A.!!$F3 1522
3 TraesCS4A01G497300 chr4A 743675046 743676479 1433 False 1609.00 1609 86.9870 716 2146 1 chr4A.!!$F2 1430
4 TraesCS4A01G497300 chr4A 744012319 744014629 2310 True 1336.50 2185 91.0770 183 2128 2 chr4A.!!$R4 1945
5 TraesCS4A01G497300 chr4A 744378271 744380512 2241 True 849.65 1628 88.4345 111 2516 2 chr4A.!!$R5 2405
6 TraesCS4A01G497300 chr7A 633861 635730 1869 False 1372.00 2527 90.1635 562 2521 2 chr7A.!!$F3 1959
7 TraesCS4A01G497300 chr7A 330544 332756 2212 False 875.00 1648 85.2650 112 2511 2 chr7A.!!$F2 2399
8 TraesCS4A01G497300 chr7A 623343 623844 501 False 525.00 525 85.8220 44 560 1 chr7A.!!$F1 516
9 TraesCS4A01G497300 chr7D 1234443 1237395 2952 True 833.50 2172 89.7265 57 3139 4 chr7D.!!$R1 3082
10 TraesCS4A01G497300 chrUn 51384670 51385939 1269 False 2034.00 2034 95.5940 868 2136 1 chrUn.!!$F1 1268
11 TraesCS4A01G497300 chrUn 51390527 51391029 502 False 521.00 521 85.6330 44 560 1 chrUn.!!$F2 516
12 TraesCS4A01G497300 chr3D 19013989 19015322 1333 False 1203.00 1203 82.9630 729 2077 1 chr3D.!!$F1 1348
13 TraesCS4A01G497300 chr3A 26489392 26490684 1292 False 1182.00 1182 83.1680 767 2073 1 chr3A.!!$F1 1306
14 TraesCS4A01G497300 chr3B 30065976 30067392 1416 True 1099.00 1099 80.8160 767 2232 1 chr3B.!!$R1 1465

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.108520 TAGCGTTGGTGTCGATTCCC 60.109 55.0 6.42 0.0 0.0 3.97 F
39 40 0.108520 GCGTTGGTGTCGATTCCCTA 60.109 55.0 6.42 0.0 0.0 3.53 F
1082 1722 0.251354 ACATCCTCTCGCAGCAATGT 59.749 50.0 0.00 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1170 1810 1.003233 ACGAACTCACTCCCATTTCCC 59.997 52.381 0.0 0.0 0.00 3.97 R
1200 1840 2.097825 GAAGTCCTGCCAATGCTCATT 58.902 47.619 0.0 0.0 38.71 2.57 R
2541 3242 0.032952 GTAGTGCAGGTGTGAACGGA 59.967 55.000 0.0 0.0 37.30 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.708177 AGATGTTTGATATTGCCTAGCGT 58.292 39.130 0.00 0.00 0.00 5.07
24 25 5.126067 AGATGTTTGATATTGCCTAGCGTT 58.874 37.500 0.00 0.00 0.00 4.84
25 26 4.614555 TGTTTGATATTGCCTAGCGTTG 57.385 40.909 0.00 0.00 0.00 4.10
26 27 3.376859 TGTTTGATATTGCCTAGCGTTGG 59.623 43.478 0.00 0.00 0.00 3.77
27 28 3.275617 TTGATATTGCCTAGCGTTGGT 57.724 42.857 0.00 0.00 0.00 3.67
28 29 2.560504 TGATATTGCCTAGCGTTGGTG 58.439 47.619 0.00 0.00 0.00 4.17
29 30 2.093181 TGATATTGCCTAGCGTTGGTGT 60.093 45.455 0.00 0.00 0.00 4.16
30 31 2.018542 TATTGCCTAGCGTTGGTGTC 57.981 50.000 0.00 0.00 0.00 3.67
31 32 1.019278 ATTGCCTAGCGTTGGTGTCG 61.019 55.000 0.00 0.00 0.00 4.35
32 33 2.089887 TTGCCTAGCGTTGGTGTCGA 62.090 55.000 0.00 0.00 0.00 4.20
33 34 1.153628 GCCTAGCGTTGGTGTCGAT 60.154 57.895 0.00 0.00 0.00 3.59
34 35 0.739813 GCCTAGCGTTGGTGTCGATT 60.740 55.000 0.00 0.00 0.00 3.34
35 36 1.278238 CCTAGCGTTGGTGTCGATTC 58.722 55.000 0.00 0.00 0.00 2.52
36 37 1.278238 CTAGCGTTGGTGTCGATTCC 58.722 55.000 0.00 0.00 0.00 3.01
37 38 0.108520 TAGCGTTGGTGTCGATTCCC 60.109 55.000 6.42 0.00 0.00 3.97
38 39 1.375523 GCGTTGGTGTCGATTCCCT 60.376 57.895 6.42 0.00 0.00 4.20
39 40 0.108520 GCGTTGGTGTCGATTCCCTA 60.109 55.000 6.42 0.00 0.00 3.53
40 41 1.922570 CGTTGGTGTCGATTCCCTAG 58.077 55.000 6.42 0.00 0.00 3.02
41 42 1.203994 CGTTGGTGTCGATTCCCTAGT 59.796 52.381 6.42 0.00 0.00 2.57
42 43 2.424601 CGTTGGTGTCGATTCCCTAGTA 59.575 50.000 6.42 0.00 0.00 1.82
54 55 5.473846 CGATTCCCTAGTATCAGACAAGCTA 59.526 44.000 0.00 0.00 0.00 3.32
60 61 6.428771 CCCTAGTATCAGACAAGCTAGAGTAC 59.571 46.154 0.00 0.00 33.05 2.73
84 86 7.875971 ACAGTTGAAGACTTGGAATACATTTC 58.124 34.615 0.00 0.00 36.10 2.17
108 110 3.458044 TGACTAGTGAGATGTGACCCT 57.542 47.619 0.00 0.00 0.00 4.34
109 111 3.357203 TGACTAGTGAGATGTGACCCTC 58.643 50.000 0.00 0.00 0.00 4.30
175 222 6.330278 TGTAGTCCATGTTCTATCGTTCTTG 58.670 40.000 0.00 0.00 0.00 3.02
208 257 9.965824 TGAAATTTCTTTCTTTCTTCCATACAC 57.034 29.630 18.64 0.00 41.18 2.90
225 274 8.030744 TCCATACACATTTCATTTGCAAAATG 57.969 30.769 17.19 16.73 44.60 2.32
244 294 9.884465 GCAAAATGTGAAGATTCATATACTACC 57.116 33.333 5.39 0.00 37.94 3.18
288 345 2.571653 CCAATGTACTCCCTCTGTTCCA 59.428 50.000 0.00 0.00 0.00 3.53
292 349 4.081322 TGTACTCCCTCTGTTCCAAAAC 57.919 45.455 0.00 0.00 35.85 2.43
350 410 8.445493 CCAAAACGTCTTATATTTTAGAACGGT 58.555 33.333 0.00 0.00 0.00 4.83
431 491 1.228124 CAGGAGGGCCGTCACAAAA 60.228 57.895 25.86 0.00 39.96 2.44
479 540 6.696411 ACTTTCACCATCTTTTCACAAACAA 58.304 32.000 0.00 0.00 0.00 2.83
481 542 7.823799 ACTTTCACCATCTTTTCACAAACAAAT 59.176 29.630 0.00 0.00 0.00 2.32
610 1222 6.323737 TGGGGATTTTTGTGATTAAGGGTTA 58.676 36.000 0.00 0.00 0.00 2.85
637 1249 1.607801 CCCTCACGCATCACTCTCCA 61.608 60.000 0.00 0.00 0.00 3.86
762 1377 1.478631 TTTGCCACCACACAATGTCA 58.521 45.000 0.00 0.00 0.00 3.58
806 1430 8.328758 ACTACTGATGGTCTTGGAAATCATAAA 58.671 33.333 0.00 0.00 0.00 1.40
807 1431 9.347240 CTACTGATGGTCTTGGAAATCATAAAT 57.653 33.333 0.00 0.00 0.00 1.40
808 1432 8.230472 ACTGATGGTCTTGGAAATCATAAATC 57.770 34.615 0.00 0.00 0.00 2.17
809 1433 7.835682 ACTGATGGTCTTGGAAATCATAAATCA 59.164 33.333 0.00 0.00 0.00 2.57
810 1434 8.771521 TGATGGTCTTGGAAATCATAAATCAT 57.228 30.769 0.00 0.00 0.00 2.45
811 1435 9.865152 TGATGGTCTTGGAAATCATAAATCATA 57.135 29.630 0.00 0.00 0.00 2.15
937 1573 5.709164 GTGCTGATATGGCATAGAAAAGGAT 59.291 40.000 13.39 0.00 41.86 3.24
963 1599 5.385198 AGACTATGGTTTCTCCTTTGCAAA 58.615 37.500 12.14 12.14 37.07 3.68
969 1605 4.119862 GGTTTCTCCTTTGCAAAAAGACC 58.880 43.478 18.66 15.35 31.58 3.85
1046 1682 5.488341 AGCTCCAAAACGATACATGTACTT 58.512 37.500 7.96 0.00 0.00 2.24
1082 1722 0.251354 ACATCCTCTCGCAGCAATGT 59.749 50.000 0.00 0.00 0.00 2.71
1155 1795 3.740141 GCCGCCTAGTAGCAGTGAAATTA 60.740 47.826 0.00 0.00 0.00 1.40
1182 1822 2.225343 TGAATGCAAGGGAAATGGGAGT 60.225 45.455 0.00 0.00 0.00 3.85
1188 1828 3.084786 CAAGGGAAATGGGAGTGAGTTC 58.915 50.000 0.00 0.00 0.00 3.01
1200 1840 3.192844 GGAGTGAGTTCGTGAATGAGGTA 59.807 47.826 0.00 0.00 0.00 3.08
1329 1969 8.602424 TCCTTGGATAAGTTCATTTACTCAGAA 58.398 33.333 0.00 0.00 31.80 3.02
1596 2239 2.956333 TCCAGAAGTTCACTCTCGAACA 59.044 45.455 5.50 0.00 46.32 3.18
1597 2240 3.004839 TCCAGAAGTTCACTCTCGAACAG 59.995 47.826 5.50 0.00 46.32 3.16
1860 2503 7.976135 ACCTATATATCGCCCTACTATAACG 57.024 40.000 0.00 0.00 0.00 3.18
1928 2571 1.136110 ACCAAAGCAAAACTTCGGTGG 59.864 47.619 0.00 0.00 44.36 4.61
2139 2793 4.796495 GGCCGCCGACCCTTTGAT 62.796 66.667 0.00 0.00 0.00 2.57
2229 2891 5.047235 ACCTGTAGTGGAGTACATTCAGAAC 60.047 44.000 0.00 0.00 32.45 3.01
2232 2894 6.688578 TGTAGTGGAGTACATTCAGAACTTC 58.311 40.000 0.00 0.00 0.00 3.01
2233 2895 5.153950 AGTGGAGTACATTCAGAACTTCC 57.846 43.478 0.00 0.00 0.00 3.46
2234 2896 4.020128 AGTGGAGTACATTCAGAACTTCCC 60.020 45.833 0.00 0.00 0.00 3.97
2236 2898 3.370633 GGAGTACATTCAGAACTTCCCCC 60.371 52.174 0.00 0.00 0.00 5.40
2237 2899 2.236395 AGTACATTCAGAACTTCCCCCG 59.764 50.000 0.00 0.00 0.00 5.73
2238 2900 0.322546 ACATTCAGAACTTCCCCCGC 60.323 55.000 0.00 0.00 0.00 6.13
2239 2901 0.322456 CATTCAGAACTTCCCCCGCA 60.322 55.000 0.00 0.00 0.00 5.69
2241 2903 0.183971 TTCAGAACTTCCCCCGCAAA 59.816 50.000 0.00 0.00 0.00 3.68
2279 2949 9.851686 ATTCAGAAATTAGTTATGCATGACCTA 57.148 29.630 17.27 6.83 0.00 3.08
2296 2966 4.962362 TGACCTATAAGTCAGGAGCAATCA 59.038 41.667 0.00 0.00 41.78 2.57
2375 3063 5.335191 CCAAAGATCCAACTGCTAGAACAAC 60.335 44.000 0.00 0.00 0.00 3.32
2420 3116 5.136105 ACGATTTAGGGTCTAAGTATCGGT 58.864 41.667 18.07 7.89 38.09 4.69
2428 3129 5.593502 AGGGTCTAAGTATCGGTACTTTCAG 59.406 44.000 25.20 17.34 46.40 3.02
2432 3133 8.196103 GGTCTAAGTATCGGTACTTTCAGAATT 58.804 37.037 25.20 2.07 46.40 2.17
2511 3212 5.060506 TGCAAGAAAACTAATCGTGGAAGA 58.939 37.500 0.00 0.00 0.00 2.87
2521 3222 2.517598 CGTGGAAGAGGAACACACG 58.482 57.895 0.00 0.00 46.82 4.49
2522 3223 3.980583 GTGGAAGAGGAACACACGA 57.019 52.632 0.00 0.00 35.30 4.35
2523 3224 1.784525 GTGGAAGAGGAACACACGAG 58.215 55.000 0.00 0.00 35.30 4.18
2524 3225 0.033504 TGGAAGAGGAACACACGAGC 59.966 55.000 0.00 0.00 0.00 5.03
2525 3226 0.033504 GGAAGAGGAACACACGAGCA 59.966 55.000 0.00 0.00 0.00 4.26
2526 3227 1.540363 GGAAGAGGAACACACGAGCAA 60.540 52.381 0.00 0.00 0.00 3.91
2527 3228 1.795286 GAAGAGGAACACACGAGCAAG 59.205 52.381 0.00 0.00 0.00 4.01
2528 3229 0.753262 AGAGGAACACACGAGCAAGT 59.247 50.000 0.00 0.00 0.00 3.16
2529 3230 1.961394 AGAGGAACACACGAGCAAGTA 59.039 47.619 0.00 0.00 0.00 2.24
2530 3231 2.029828 AGAGGAACACACGAGCAAGTAG 60.030 50.000 0.00 0.00 0.00 2.57
2531 3232 0.790814 GGAACACACGAGCAAGTAGC 59.209 55.000 0.00 0.00 46.19 3.58
2553 3254 2.660552 CGCGTTCCGTTCACACCT 60.661 61.111 0.00 0.00 0.00 4.00
2554 3255 2.935955 GCGTTCCGTTCACACCTG 59.064 61.111 0.00 0.00 0.00 4.00
2555 3256 2.935955 CGTTCCGTTCACACCTGC 59.064 61.111 0.00 0.00 0.00 4.85
2556 3257 1.885388 CGTTCCGTTCACACCTGCA 60.885 57.895 0.00 0.00 0.00 4.41
2557 3258 1.647084 GTTCCGTTCACACCTGCAC 59.353 57.895 0.00 0.00 0.00 4.57
2558 3259 0.814010 GTTCCGTTCACACCTGCACT 60.814 55.000 0.00 0.00 0.00 4.40
2559 3260 0.753867 TTCCGTTCACACCTGCACTA 59.246 50.000 0.00 0.00 0.00 2.74
2560 3261 0.032952 TCCGTTCACACCTGCACTAC 59.967 55.000 0.00 0.00 0.00 2.73
2561 3262 0.949105 CCGTTCACACCTGCACTACC 60.949 60.000 0.00 0.00 0.00 3.18
2562 3263 0.033504 CGTTCACACCTGCACTACCT 59.966 55.000 0.00 0.00 0.00 3.08
2563 3264 1.797025 GTTCACACCTGCACTACCTC 58.203 55.000 0.00 0.00 0.00 3.85
2564 3265 0.317160 TTCACACCTGCACTACCTCG 59.683 55.000 0.00 0.00 0.00 4.63
2565 3266 1.738099 CACACCTGCACTACCTCGC 60.738 63.158 0.00 0.00 0.00 5.03
2566 3267 2.125512 CACCTGCACTACCTCGCC 60.126 66.667 0.00 0.00 0.00 5.54
2567 3268 3.760035 ACCTGCACTACCTCGCCG 61.760 66.667 0.00 0.00 0.00 6.46
2568 3269 4.514577 CCTGCACTACCTCGCCGG 62.515 72.222 0.00 0.00 39.35 6.13
2584 3285 2.995547 GGTGACCACCGCCCTAAT 59.004 61.111 3.13 0.00 42.29 1.73
2585 3286 1.153229 GGTGACCACCGCCCTAATC 60.153 63.158 3.13 0.00 42.29 1.75
2586 3287 1.623542 GGTGACCACCGCCCTAATCT 61.624 60.000 3.13 0.00 42.29 2.40
2587 3288 0.462047 GTGACCACCGCCCTAATCTG 60.462 60.000 0.00 0.00 0.00 2.90
2588 3289 1.523938 GACCACCGCCCTAATCTGC 60.524 63.158 0.00 0.00 0.00 4.26
2589 3290 2.252072 GACCACCGCCCTAATCTGCA 62.252 60.000 0.00 0.00 0.00 4.41
2590 3291 1.149174 CCACCGCCCTAATCTGCAT 59.851 57.895 0.00 0.00 0.00 3.96
2591 3292 0.396435 CCACCGCCCTAATCTGCATA 59.604 55.000 0.00 0.00 0.00 3.14
2592 3293 1.003580 CCACCGCCCTAATCTGCATAT 59.996 52.381 0.00 0.00 0.00 1.78
2593 3294 2.553028 CCACCGCCCTAATCTGCATATT 60.553 50.000 2.62 2.62 0.00 1.28
2594 3295 3.149196 CACCGCCCTAATCTGCATATTT 58.851 45.455 2.33 0.00 0.00 1.40
2595 3296 3.189287 CACCGCCCTAATCTGCATATTTC 59.811 47.826 2.33 0.00 0.00 2.17
2596 3297 3.073062 ACCGCCCTAATCTGCATATTTCT 59.927 43.478 2.33 0.00 0.00 2.52
2597 3298 3.686726 CCGCCCTAATCTGCATATTTCTC 59.313 47.826 2.33 0.00 0.00 2.87
2598 3299 3.686726 CGCCCTAATCTGCATATTTCTCC 59.313 47.826 2.33 0.00 0.00 3.71
2599 3300 4.013050 GCCCTAATCTGCATATTTCTCCC 58.987 47.826 2.33 0.00 0.00 4.30
2600 3301 4.593956 CCCTAATCTGCATATTTCTCCCC 58.406 47.826 2.33 0.00 0.00 4.81
2601 3302 4.568592 CCCTAATCTGCATATTTCTCCCCC 60.569 50.000 2.33 0.00 0.00 5.40
2602 3303 4.290722 CCTAATCTGCATATTTCTCCCCCT 59.709 45.833 2.33 0.00 0.00 4.79
2603 3304 4.379302 AATCTGCATATTTCTCCCCCTC 57.621 45.455 0.00 0.00 0.00 4.30
2604 3305 3.066208 TCTGCATATTTCTCCCCCTCT 57.934 47.619 0.00 0.00 0.00 3.69
2605 3306 2.707791 TCTGCATATTTCTCCCCCTCTG 59.292 50.000 0.00 0.00 0.00 3.35
2606 3307 1.143684 TGCATATTTCTCCCCCTCTGC 59.856 52.381 0.00 0.00 0.00 4.26
2607 3308 1.546548 GCATATTTCTCCCCCTCTGCC 60.547 57.143 0.00 0.00 0.00 4.85
2608 3309 2.061061 CATATTTCTCCCCCTCTGCCT 58.939 52.381 0.00 0.00 0.00 4.75
2609 3310 3.251484 CATATTTCTCCCCCTCTGCCTA 58.749 50.000 0.00 0.00 0.00 3.93
2610 3311 1.512735 ATTTCTCCCCCTCTGCCTAC 58.487 55.000 0.00 0.00 0.00 3.18
2611 3312 0.976073 TTTCTCCCCCTCTGCCTACG 60.976 60.000 0.00 0.00 0.00 3.51
2612 3313 2.840102 CTCCCCCTCTGCCTACGG 60.840 72.222 0.00 0.00 0.00 4.02
2613 3314 3.680196 TCCCCCTCTGCCTACGGT 61.680 66.667 0.00 0.00 0.00 4.83
2614 3315 2.281091 CCCCCTCTGCCTACGGTA 59.719 66.667 0.00 0.00 0.00 4.02
2615 3316 2.132352 CCCCCTCTGCCTACGGTAC 61.132 68.421 0.00 0.00 0.00 3.34
2628 3329 3.488090 GGTACGTTGGCGCTGCTC 61.488 66.667 7.64 0.00 42.83 4.26
2629 3330 3.488090 GTACGTTGGCGCTGCTCC 61.488 66.667 7.64 0.71 42.83 4.70
2646 3347 2.465920 CGTCAGCAACGTCGCTTC 59.534 61.111 0.00 0.00 46.42 3.86
2647 3348 2.853914 GTCAGCAACGTCGCTTCC 59.146 61.111 0.00 0.00 41.38 3.46
2648 3349 2.733218 TCAGCAACGTCGCTTCCG 60.733 61.111 0.00 0.00 41.38 4.30
2649 3350 3.036084 CAGCAACGTCGCTTCCGT 61.036 61.111 0.00 0.00 41.38 4.69
2650 3351 3.036084 AGCAACGTCGCTTCCGTG 61.036 61.111 0.00 0.00 39.99 4.94
2651 3352 4.072088 GCAACGTCGCTTCCGTGG 62.072 66.667 0.00 0.00 38.77 4.94
2652 3353 4.072088 CAACGTCGCTTCCGTGGC 62.072 66.667 0.00 0.00 38.77 5.01
2659 3360 4.344865 GCTTCCGTGGCCCCTCAA 62.345 66.667 0.00 0.00 0.00 3.02
2660 3361 2.359975 CTTCCGTGGCCCCTCAAC 60.360 66.667 0.00 0.00 0.00 3.18
2661 3362 2.852075 TTCCGTGGCCCCTCAACT 60.852 61.111 0.00 0.00 0.00 3.16
2662 3363 3.190738 TTCCGTGGCCCCTCAACTG 62.191 63.158 0.00 0.00 0.00 3.16
2668 3369 4.329545 GCCCCTCAACTGCCGACA 62.330 66.667 0.00 0.00 0.00 4.35
2669 3370 2.671070 CCCCTCAACTGCCGACAT 59.329 61.111 0.00 0.00 0.00 3.06
2670 3371 1.904771 CCCCTCAACTGCCGACATA 59.095 57.895 0.00 0.00 0.00 2.29
2671 3372 0.251916 CCCCTCAACTGCCGACATAA 59.748 55.000 0.00 0.00 0.00 1.90
2672 3373 1.656652 CCCTCAACTGCCGACATAAG 58.343 55.000 0.00 0.00 0.00 1.73
2673 3374 1.207089 CCCTCAACTGCCGACATAAGA 59.793 52.381 0.00 0.00 0.00 2.10
2674 3375 2.354704 CCCTCAACTGCCGACATAAGAA 60.355 50.000 0.00 0.00 0.00 2.52
2675 3376 2.673368 CCTCAACTGCCGACATAAGAAC 59.327 50.000 0.00 0.00 0.00 3.01
2676 3377 2.673368 CTCAACTGCCGACATAAGAACC 59.327 50.000 0.00 0.00 0.00 3.62
2677 3378 2.037902 TCAACTGCCGACATAAGAACCA 59.962 45.455 0.00 0.00 0.00 3.67
2678 3379 2.094762 ACTGCCGACATAAGAACCAC 57.905 50.000 0.00 0.00 0.00 4.16
2679 3380 1.338769 ACTGCCGACATAAGAACCACC 60.339 52.381 0.00 0.00 0.00 4.61
2680 3381 0.390603 TGCCGACATAAGAACCACCG 60.391 55.000 0.00 0.00 0.00 4.94
2681 3382 0.108520 GCCGACATAAGAACCACCGA 60.109 55.000 0.00 0.00 0.00 4.69
2682 3383 1.472728 GCCGACATAAGAACCACCGAT 60.473 52.381 0.00 0.00 0.00 4.18
2683 3384 2.201732 CCGACATAAGAACCACCGATG 58.798 52.381 0.00 0.00 0.00 3.84
2684 3385 1.593006 CGACATAAGAACCACCGATGC 59.407 52.381 0.00 0.00 0.00 3.91
2685 3386 1.940613 GACATAAGAACCACCGATGCC 59.059 52.381 0.00 0.00 0.00 4.40
2686 3387 0.937304 CATAAGAACCACCGATGCCG 59.063 55.000 0.00 0.00 0.00 5.69
2687 3388 0.828022 ATAAGAACCACCGATGCCGA 59.172 50.000 0.00 0.00 38.22 5.54
2688 3389 0.174845 TAAGAACCACCGATGCCGAG 59.825 55.000 0.00 0.00 38.22 4.63
2689 3390 3.195698 GAACCACCGATGCCGAGC 61.196 66.667 0.00 0.00 38.22 5.03
2690 3391 3.665675 GAACCACCGATGCCGAGCT 62.666 63.158 0.00 0.00 38.22 4.09
2691 3392 3.254024 AACCACCGATGCCGAGCTT 62.254 57.895 0.00 0.00 38.22 3.74
2692 3393 2.892425 CCACCGATGCCGAGCTTC 60.892 66.667 0.00 0.00 38.22 3.86
2693 3394 2.892425 CACCGATGCCGAGCTTCC 60.892 66.667 0.00 0.00 38.22 3.46
2694 3395 4.162690 ACCGATGCCGAGCTTCCC 62.163 66.667 0.00 0.00 38.22 3.97
2695 3396 4.161295 CCGATGCCGAGCTTCCCA 62.161 66.667 0.00 0.00 38.22 4.37
2696 3397 2.125147 CGATGCCGAGCTTCCCAA 60.125 61.111 0.00 0.00 38.22 4.12
2697 3398 1.524621 CGATGCCGAGCTTCCCAAT 60.525 57.895 0.00 0.00 38.22 3.16
2698 3399 1.502163 CGATGCCGAGCTTCCCAATC 61.502 60.000 0.00 0.00 38.22 2.67
2699 3400 0.179034 GATGCCGAGCTTCCCAATCT 60.179 55.000 0.00 0.00 0.00 2.40
2700 3401 0.179034 ATGCCGAGCTTCCCAATCTC 60.179 55.000 0.00 0.00 0.00 2.75
2701 3402 1.267574 TGCCGAGCTTCCCAATCTCT 61.268 55.000 0.00 0.00 0.00 3.10
2702 3403 0.107459 GCCGAGCTTCCCAATCTCTT 60.107 55.000 0.00 0.00 0.00 2.85
2703 3404 1.680249 GCCGAGCTTCCCAATCTCTTT 60.680 52.381 0.00 0.00 0.00 2.52
2704 3405 2.284190 CCGAGCTTCCCAATCTCTTTC 58.716 52.381 0.00 0.00 0.00 2.62
2705 3406 2.284190 CGAGCTTCCCAATCTCTTTCC 58.716 52.381 0.00 0.00 0.00 3.13
2706 3407 2.649190 GAGCTTCCCAATCTCTTTCCC 58.351 52.381 0.00 0.00 0.00 3.97
2707 3408 1.995542 AGCTTCCCAATCTCTTTCCCA 59.004 47.619 0.00 0.00 0.00 4.37
2708 3409 2.584498 AGCTTCCCAATCTCTTTCCCAT 59.416 45.455 0.00 0.00 0.00 4.00
2709 3410 3.012161 AGCTTCCCAATCTCTTTCCCATT 59.988 43.478 0.00 0.00 0.00 3.16
2710 3411 3.382865 GCTTCCCAATCTCTTTCCCATTC 59.617 47.826 0.00 0.00 0.00 2.67
2711 3412 4.864726 CTTCCCAATCTCTTTCCCATTCT 58.135 43.478 0.00 0.00 0.00 2.40
2712 3413 4.953781 TCCCAATCTCTTTCCCATTCTT 57.046 40.909 0.00 0.00 0.00 2.52
2713 3414 5.275263 TCCCAATCTCTTTCCCATTCTTT 57.725 39.130 0.00 0.00 0.00 2.52
2714 3415 5.018809 TCCCAATCTCTTTCCCATTCTTTG 58.981 41.667 0.00 0.00 0.00 2.77
2715 3416 4.774200 CCCAATCTCTTTCCCATTCTTTGT 59.226 41.667 0.00 0.00 0.00 2.83
2716 3417 5.246883 CCCAATCTCTTTCCCATTCTTTGTT 59.753 40.000 0.00 0.00 0.00 2.83
2717 3418 6.239686 CCCAATCTCTTTCCCATTCTTTGTTT 60.240 38.462 0.00 0.00 0.00 2.83
2718 3419 6.870439 CCAATCTCTTTCCCATTCTTTGTTTC 59.130 38.462 0.00 0.00 0.00 2.78
2719 3420 7.256083 CCAATCTCTTTCCCATTCTTTGTTTCT 60.256 37.037 0.00 0.00 0.00 2.52
2720 3421 8.796475 CAATCTCTTTCCCATTCTTTGTTTCTA 58.204 33.333 0.00 0.00 0.00 2.10
2721 3422 7.745620 TCTCTTTCCCATTCTTTGTTTCTAC 57.254 36.000 0.00 0.00 0.00 2.59
2722 3423 7.518188 TCTCTTTCCCATTCTTTGTTTCTACT 58.482 34.615 0.00 0.00 0.00 2.57
2723 3424 7.998964 TCTCTTTCCCATTCTTTGTTTCTACTT 59.001 33.333 0.00 0.00 0.00 2.24
2724 3425 7.940850 TCTTTCCCATTCTTTGTTTCTACTTG 58.059 34.615 0.00 0.00 0.00 3.16
2725 3426 5.705609 TCCCATTCTTTGTTTCTACTTGC 57.294 39.130 0.00 0.00 0.00 4.01
2726 3427 4.215399 TCCCATTCTTTGTTTCTACTTGCG 59.785 41.667 0.00 0.00 0.00 4.85
2727 3428 4.023193 CCCATTCTTTGTTTCTACTTGCGT 60.023 41.667 0.00 0.00 0.00 5.24
2728 3429 5.147162 CCATTCTTTGTTTCTACTTGCGTC 58.853 41.667 0.00 0.00 0.00 5.19
2729 3430 5.277779 CCATTCTTTGTTTCTACTTGCGTCA 60.278 40.000 0.00 0.00 0.00 4.35
2730 3431 4.789095 TCTTTGTTTCTACTTGCGTCAC 57.211 40.909 0.00 0.00 0.00 3.67
2731 3432 4.439057 TCTTTGTTTCTACTTGCGTCACT 58.561 39.130 0.00 0.00 0.00 3.41
2732 3433 4.270084 TCTTTGTTTCTACTTGCGTCACTG 59.730 41.667 0.00 0.00 0.00 3.66
2733 3434 1.864711 TGTTTCTACTTGCGTCACTGC 59.135 47.619 0.00 0.00 0.00 4.40
2734 3435 1.864711 GTTTCTACTTGCGTCACTGCA 59.135 47.619 0.00 0.00 44.61 4.41
2735 3436 2.455674 TTCTACTTGCGTCACTGCAT 57.544 45.000 0.00 0.00 45.78 3.96
2736 3437 3.586100 TTCTACTTGCGTCACTGCATA 57.414 42.857 0.00 0.00 45.78 3.14
2737 3438 3.801114 TCTACTTGCGTCACTGCATAT 57.199 42.857 0.00 0.00 45.78 1.78
2738 3439 3.447742 TCTACTTGCGTCACTGCATATG 58.552 45.455 0.00 0.00 45.78 1.78
2739 3440 2.385013 ACTTGCGTCACTGCATATGA 57.615 45.000 6.97 0.00 45.78 2.15
2740 3441 2.698803 ACTTGCGTCACTGCATATGAA 58.301 42.857 6.97 0.00 45.78 2.57
2741 3442 3.073678 ACTTGCGTCACTGCATATGAAA 58.926 40.909 6.97 0.00 45.78 2.69
2742 3443 3.691118 ACTTGCGTCACTGCATATGAAAT 59.309 39.130 6.97 0.00 45.78 2.17
2743 3444 4.156556 ACTTGCGTCACTGCATATGAAATT 59.843 37.500 6.97 0.00 45.78 1.82
2744 3445 4.018649 TGCGTCACTGCATATGAAATTG 57.981 40.909 6.97 0.00 40.62 2.32
2745 3446 2.785477 GCGTCACTGCATATGAAATTGC 59.215 45.455 6.97 0.00 39.33 3.56
2746 3447 3.731565 GCGTCACTGCATATGAAATTGCA 60.732 43.478 6.97 0.00 46.03 4.08
2747 3448 3.787634 CGTCACTGCATATGAAATTGCAC 59.212 43.478 6.97 0.00 43.54 4.57
2748 3449 4.672283 CGTCACTGCATATGAAATTGCACA 60.672 41.667 6.97 0.00 43.54 4.57
2749 3450 5.345702 GTCACTGCATATGAAATTGCACAT 58.654 37.500 6.97 0.00 43.54 3.21
2750 3451 5.231357 GTCACTGCATATGAAATTGCACATG 59.769 40.000 6.97 0.00 43.54 3.21
2751 3452 4.506288 CACTGCATATGAAATTGCACATGG 59.494 41.667 6.81 0.00 43.54 3.66
2752 3453 4.403113 ACTGCATATGAAATTGCACATGGA 59.597 37.500 6.81 2.72 43.54 3.41
2753 3454 5.069914 ACTGCATATGAAATTGCACATGGAT 59.930 36.000 6.81 0.00 43.54 3.41
2754 3455 6.265876 ACTGCATATGAAATTGCACATGGATA 59.734 34.615 6.81 0.00 43.54 2.59
2755 3456 7.039293 ACTGCATATGAAATTGCACATGGATAT 60.039 33.333 6.81 0.00 43.54 1.63
2756 3457 7.093992 TGCATATGAAATTGCACATGGATATG 58.906 34.615 6.81 2.98 43.54 1.78
2769 3470 5.969423 ACATGGATATGTGCTTTCTTTTGG 58.031 37.500 0.00 0.00 45.54 3.28
2770 3471 4.454728 TGGATATGTGCTTTCTTTTGGC 57.545 40.909 0.00 0.00 0.00 4.52
2771 3472 3.831333 TGGATATGTGCTTTCTTTTGGCA 59.169 39.130 0.00 0.00 0.00 4.92
2772 3473 4.282957 TGGATATGTGCTTTCTTTTGGCAA 59.717 37.500 0.00 0.00 37.73 4.52
2773 3474 5.046448 TGGATATGTGCTTTCTTTTGGCAAT 60.046 36.000 0.00 0.00 37.73 3.56
2774 3475 5.521372 GGATATGTGCTTTCTTTTGGCAATC 59.479 40.000 0.00 0.00 37.73 2.67
2775 3476 3.815856 TGTGCTTTCTTTTGGCAATCA 57.184 38.095 0.00 0.00 37.73 2.57
2776 3477 3.456280 TGTGCTTTCTTTTGGCAATCAC 58.544 40.909 0.00 2.23 37.73 3.06
2777 3478 3.132646 TGTGCTTTCTTTTGGCAATCACT 59.867 39.130 0.00 0.00 37.73 3.41
2778 3479 3.492011 GTGCTTTCTTTTGGCAATCACTG 59.508 43.478 0.00 0.00 37.73 3.66
2787 3488 3.826637 GCAATCACTGCCTGCAAAT 57.173 47.368 0.00 0.00 46.13 2.32
2788 3489 2.945447 GCAATCACTGCCTGCAAATA 57.055 45.000 0.00 0.00 46.13 1.40
2789 3490 2.533266 GCAATCACTGCCTGCAAATAC 58.467 47.619 0.00 0.00 46.13 1.89
2790 3491 2.094597 GCAATCACTGCCTGCAAATACA 60.095 45.455 0.00 0.00 46.13 2.29
2791 3492 3.429822 GCAATCACTGCCTGCAAATACAT 60.430 43.478 0.00 0.00 46.13 2.29
2792 3493 4.109766 CAATCACTGCCTGCAAATACATG 58.890 43.478 0.00 0.00 0.00 3.21
2793 3494 2.794103 TCACTGCCTGCAAATACATGT 58.206 42.857 2.69 2.69 0.00 3.21
2794 3495 3.949132 TCACTGCCTGCAAATACATGTA 58.051 40.909 8.27 8.27 0.00 2.29
2795 3496 3.940852 TCACTGCCTGCAAATACATGTAG 59.059 43.478 11.91 0.00 33.39 2.74
2796 3497 2.684881 ACTGCCTGCAAATACATGTAGC 59.315 45.455 11.91 9.89 32.39 3.58
2797 3498 2.023673 TGCCTGCAAATACATGTAGCC 58.976 47.619 11.91 0.45 32.39 3.93
2798 3499 2.023673 GCCTGCAAATACATGTAGCCA 58.976 47.619 11.91 4.84 32.39 4.75
2799 3500 2.033801 GCCTGCAAATACATGTAGCCAG 59.966 50.000 11.91 12.96 32.39 4.85
2800 3501 2.033801 CCTGCAAATACATGTAGCCAGC 59.966 50.000 11.91 12.36 32.39 4.85
2801 3502 2.684374 CTGCAAATACATGTAGCCAGCA 59.316 45.455 11.91 15.78 0.00 4.41
2802 3503 3.289836 TGCAAATACATGTAGCCAGCAT 58.710 40.909 11.91 0.00 0.00 3.79
2803 3504 3.067040 TGCAAATACATGTAGCCAGCATG 59.933 43.478 11.91 10.11 46.51 4.06
2809 3510 2.631267 CATGTAGCCAGCATGTGTACA 58.369 47.619 0.00 0.00 38.96 2.90
2810 3511 3.208594 CATGTAGCCAGCATGTGTACAT 58.791 45.455 0.00 1.20 38.96 2.29
2832 3533 8.899427 ACATGTGTTGATAGAGATAAATGGAG 57.101 34.615 0.00 0.00 0.00 3.86
2846 3547 3.058160 GGAGTGTGCTGCGCCATT 61.058 61.111 11.12 0.00 0.00 3.16
2886 3587 7.075674 TCACACATATGTCAATTAAGTGCAG 57.924 36.000 5.07 0.00 36.72 4.41
2901 3602 0.035152 TGCAGGATGATTCGTTGCCT 60.035 50.000 1.17 0.00 39.69 4.75
2909 3610 1.084289 GATTCGTTGCCTGGGTGTAC 58.916 55.000 0.00 0.00 0.00 2.90
2910 3611 0.398696 ATTCGTTGCCTGGGTGTACA 59.601 50.000 0.00 0.00 0.00 2.90
2918 3619 2.038033 TGCCTGGGTGTACAAGTTACTC 59.962 50.000 0.00 0.00 0.00 2.59
2922 3623 4.022068 CCTGGGTGTACAAGTTACTCGTAA 60.022 45.833 0.00 0.00 0.00 3.18
2937 3641 9.426837 AGTTACTCGTAATAAACAACATGCTAA 57.573 29.630 0.00 0.00 0.00 3.09
2964 3668 5.954150 ACTTTGATGCAAAACTATCAGGGAT 59.046 36.000 0.00 0.00 35.01 3.85
2971 3675 8.773033 ATGCAAAACTATCAGGGATTTTCTAT 57.227 30.769 0.00 0.00 0.00 1.98
3015 3719 4.563061 GGTTAATTACCGGATCTATGCGT 58.437 43.478 9.46 0.00 40.15 5.24
3020 3724 2.724977 ACCGGATCTATGCGTATGTG 57.275 50.000 9.46 0.00 40.15 3.21
3031 3735 3.485947 TGCGTATGTGAATTTTCTGCC 57.514 42.857 0.00 0.00 0.00 4.85
3035 3739 4.379394 GCGTATGTGAATTTTCTGCCTTCA 60.379 41.667 0.00 0.00 0.00 3.02
3065 3769 2.514803 AGGAAAGAAAATGTCCCCGTG 58.485 47.619 0.00 0.00 31.25 4.94
3071 3775 1.887344 AAAATGTCCCCGTGCATGCC 61.887 55.000 16.68 5.63 0.00 4.40
3083 3787 1.153978 GCATGCCGGTGTGATTGTG 60.154 57.895 6.36 0.00 0.00 3.33
3087 3791 0.106894 TGCCGGTGTGATTGTGTACA 59.893 50.000 1.90 0.00 0.00 2.90
3095 3799 4.454161 GGTGTGATTGTGTACACTGCAATA 59.546 41.667 25.60 10.99 44.91 1.90
3097 3801 6.079763 GTGTGATTGTGTACACTGCAATAAG 58.920 40.000 25.60 0.00 42.86 1.73
3104 3809 9.884636 ATTGTGTACACTGCAATAAGTAATCTA 57.115 29.630 25.60 0.00 31.87 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.853936 ACGCTAGGCAATATCAAACATCTA 58.146 37.500 0.00 0.00 0.00 1.98
1 2 4.708177 ACGCTAGGCAATATCAAACATCT 58.292 39.130 0.00 0.00 0.00 2.90
2 3 5.207768 CAACGCTAGGCAATATCAAACATC 58.792 41.667 0.00 0.00 0.00 3.06
3 4 4.036734 CCAACGCTAGGCAATATCAAACAT 59.963 41.667 0.00 0.00 0.00 2.71
4 5 3.376859 CCAACGCTAGGCAATATCAAACA 59.623 43.478 0.00 0.00 0.00 2.83
5 6 3.377172 ACCAACGCTAGGCAATATCAAAC 59.623 43.478 0.00 0.00 0.00 2.93
6 7 3.376859 CACCAACGCTAGGCAATATCAAA 59.623 43.478 0.00 0.00 0.00 2.69
7 8 2.942376 CACCAACGCTAGGCAATATCAA 59.058 45.455 0.00 0.00 0.00 2.57
8 9 2.093181 ACACCAACGCTAGGCAATATCA 60.093 45.455 0.00 0.00 0.00 2.15
9 10 2.544267 GACACCAACGCTAGGCAATATC 59.456 50.000 0.00 0.00 0.00 1.63
10 11 2.561569 GACACCAACGCTAGGCAATAT 58.438 47.619 0.00 0.00 0.00 1.28
11 12 1.737696 CGACACCAACGCTAGGCAATA 60.738 52.381 0.00 0.00 0.00 1.90
12 13 1.019278 CGACACCAACGCTAGGCAAT 61.019 55.000 0.00 0.00 0.00 3.56
13 14 1.666553 CGACACCAACGCTAGGCAA 60.667 57.895 0.00 0.00 0.00 4.52
14 15 1.884075 ATCGACACCAACGCTAGGCA 61.884 55.000 0.00 0.00 0.00 4.75
15 16 0.739813 AATCGACACCAACGCTAGGC 60.740 55.000 0.00 0.00 0.00 3.93
16 17 1.278238 GAATCGACACCAACGCTAGG 58.722 55.000 0.00 0.00 0.00 3.02
17 18 1.278238 GGAATCGACACCAACGCTAG 58.722 55.000 5.04 0.00 0.00 3.42
18 19 0.108520 GGGAATCGACACCAACGCTA 60.109 55.000 11.06 0.00 0.00 4.26
19 20 1.375523 GGGAATCGACACCAACGCT 60.376 57.895 11.06 0.00 0.00 5.07
20 21 0.108520 TAGGGAATCGACACCAACGC 60.109 55.000 11.06 0.00 0.00 4.84
21 22 1.203994 ACTAGGGAATCGACACCAACG 59.796 52.381 11.06 0.00 0.00 4.10
22 23 4.098960 TGATACTAGGGAATCGACACCAAC 59.901 45.833 11.06 0.00 0.00 3.77
23 24 4.283337 TGATACTAGGGAATCGACACCAA 58.717 43.478 11.06 0.00 0.00 3.67
24 25 3.889538 CTGATACTAGGGAATCGACACCA 59.110 47.826 11.06 0.00 0.00 4.17
25 26 4.023021 GTCTGATACTAGGGAATCGACACC 60.023 50.000 0.00 0.00 31.73 4.16
26 27 4.579340 TGTCTGATACTAGGGAATCGACAC 59.421 45.833 16.23 0.00 34.19 3.67
27 28 4.788679 TGTCTGATACTAGGGAATCGACA 58.211 43.478 16.23 16.23 35.41 4.35
28 29 5.764131 CTTGTCTGATACTAGGGAATCGAC 58.236 45.833 0.00 7.18 0.00 4.20
29 30 4.278669 GCTTGTCTGATACTAGGGAATCGA 59.721 45.833 0.00 0.00 32.28 3.59
30 31 4.279671 AGCTTGTCTGATACTAGGGAATCG 59.720 45.833 0.00 0.00 32.28 3.34
31 32 5.799827 AGCTTGTCTGATACTAGGGAATC 57.200 43.478 0.00 0.00 32.28 2.52
32 33 6.615617 TCTAGCTTGTCTGATACTAGGGAAT 58.384 40.000 0.00 0.00 32.28 3.01
33 34 6.014771 TCTAGCTTGTCTGATACTAGGGAA 57.985 41.667 0.00 0.00 32.28 3.97
34 35 5.132985 ACTCTAGCTTGTCTGATACTAGGGA 59.867 44.000 0.00 0.00 35.43 4.20
35 36 5.381757 ACTCTAGCTTGTCTGATACTAGGG 58.618 45.833 0.00 0.00 37.44 3.53
36 37 6.993308 TGTACTCTAGCTTGTCTGATACTAGG 59.007 42.308 0.00 0.00 32.28 3.02
37 38 7.713507 ACTGTACTCTAGCTTGTCTGATACTAG 59.286 40.741 0.00 0.00 34.47 2.57
38 39 7.566569 ACTGTACTCTAGCTTGTCTGATACTA 58.433 38.462 0.00 0.00 0.00 1.82
39 40 6.419791 ACTGTACTCTAGCTTGTCTGATACT 58.580 40.000 0.00 0.00 0.00 2.12
40 41 6.687081 ACTGTACTCTAGCTTGTCTGATAC 57.313 41.667 0.00 0.00 0.00 2.24
41 42 6.884836 TCAACTGTACTCTAGCTTGTCTGATA 59.115 38.462 0.00 0.00 0.00 2.15
42 43 5.712446 TCAACTGTACTCTAGCTTGTCTGAT 59.288 40.000 0.00 0.00 0.00 2.90
54 55 5.871396 TTCCAAGTCTTCAACTGTACTCT 57.129 39.130 0.00 0.00 38.58 3.24
60 61 7.874940 TGAAATGTATTCCAAGTCTTCAACTG 58.125 34.615 0.00 0.00 38.58 3.16
84 86 4.872691 GGGTCACATCTCACTAGTCATTTG 59.127 45.833 0.00 0.00 0.00 2.32
190 238 9.918630 AATGAAATGTGTATGGAAGAAAGAAAG 57.081 29.630 0.00 0.00 0.00 2.62
194 242 7.599621 TGCAAATGAAATGTGTATGGAAGAAAG 59.400 33.333 0.00 0.00 32.75 2.62
208 257 9.325150 GAATCTTCACATTTTGCAAATGAAATG 57.675 29.630 21.08 18.85 44.68 2.32
225 274 9.482175 AGATAGGGGTAGTATATGAATCTTCAC 57.518 37.037 0.00 0.00 40.49 3.18
288 345 6.261381 TGAACTGCCTAAACGTCTTATGTTTT 59.739 34.615 2.84 0.00 38.23 2.43
292 349 5.856126 TTGAACTGCCTAAACGTCTTATG 57.144 39.130 0.00 0.00 0.00 1.90
323 380 8.445493 CCGTTCTAAAATATAAGACGTTTTGGT 58.555 33.333 0.83 0.00 0.00 3.67
350 410 4.789159 TGTTGTCCAATAATACTACCCCCA 59.211 41.667 0.00 0.00 0.00 4.96
560 623 0.825840 CGGATGGGAGGAGAGAGGAC 60.826 65.000 0.00 0.00 0.00 3.85
610 1222 2.037620 GATGCGTGAGGGAGCCATCT 62.038 60.000 2.66 0.00 0.00 2.90
834 1462 6.970484 AGCATGTGTTAGTTCCTTTTGTAAG 58.030 36.000 0.00 0.00 0.00 2.34
910 1546 6.015688 CCTTTTCTATGCCATATCAGCACATT 60.016 38.462 0.00 0.00 44.40 2.71
937 1573 5.003804 GCAAAGGAGAAACCATAGTCTTCA 58.996 41.667 0.00 0.00 42.04 3.02
963 1599 2.582052 TCATTGTTTCCGCTGGTCTTT 58.418 42.857 0.00 0.00 0.00 2.52
969 1605 7.483375 TCGTAATTATTTTCATTGTTTCCGCTG 59.517 33.333 0.00 0.00 0.00 5.18
1046 1682 9.303116 GAGAGGATGTTATCTTCATTACCTCTA 57.697 37.037 0.00 0.00 41.97 2.43
1082 1722 2.896685 CCATAACCACCTTTTCCAAGCA 59.103 45.455 0.00 0.00 0.00 3.91
1170 1810 1.003233 ACGAACTCACTCCCATTTCCC 59.997 52.381 0.00 0.00 0.00 3.97
1182 1822 5.400066 TCATTACCTCATTCACGAACTCA 57.600 39.130 0.00 0.00 0.00 3.41
1188 1828 4.260907 CCAATGCTCATTACCTCATTCACG 60.261 45.833 0.00 0.00 0.00 4.35
1200 1840 2.097825 GAAGTCCTGCCAATGCTCATT 58.902 47.619 0.00 0.00 38.71 2.57
1329 1969 5.272402 CATCCTAAAATTTCCTTGGGGTCT 58.728 41.667 0.00 0.00 0.00 3.85
1860 2503 6.153067 TCTCTCGAACATTTCAAGAACTCTC 58.847 40.000 0.00 0.00 0.00 3.20
2030 2679 6.387041 ACATCCATATTGTGAGCTGAAATG 57.613 37.500 0.00 0.00 0.00 2.32
2129 2783 3.879892 GTGCCTTATCTGATCAAAGGGTC 59.120 47.826 21.06 9.81 40.17 4.46
2132 2786 3.310774 CACGTGCCTTATCTGATCAAAGG 59.689 47.826 17.12 17.12 42.27 3.11
2139 2793 2.499693 TGGATTCACGTGCCTTATCTGA 59.500 45.455 11.67 0.58 0.00 3.27
2251 2913 8.408601 GGTCATGCATAACTAATTTCTGAATGT 58.591 33.333 0.00 0.00 0.00 2.71
2254 2916 9.851686 ATAGGTCATGCATAACTAATTTCTGAA 57.148 29.630 0.00 0.00 0.00 3.02
2262 2924 8.367911 CCTGACTTATAGGTCATGCATAACTAA 58.632 37.037 17.09 0.00 43.94 2.24
2263 2925 7.728532 TCCTGACTTATAGGTCATGCATAACTA 59.271 37.037 17.09 2.67 43.94 2.24
2264 2926 6.554982 TCCTGACTTATAGGTCATGCATAACT 59.445 38.462 17.09 0.14 43.94 2.24
2265 2927 6.759272 TCCTGACTTATAGGTCATGCATAAC 58.241 40.000 17.09 0.00 43.94 1.89
2276 2946 5.282055 TGTGATTGCTCCTGACTTATAGG 57.718 43.478 0.00 0.00 36.63 2.57
2279 2949 3.881688 GCATGTGATTGCTCCTGACTTAT 59.118 43.478 0.00 0.00 39.57 1.73
2284 2954 0.328926 TGGCATGTGATTGCTCCTGA 59.671 50.000 0.00 0.00 42.38 3.86
2296 2966 0.398696 TGGACGGTAACTTGGCATGT 59.601 50.000 0.00 0.00 0.00 3.21
2417 3113 4.155826 TGCATCCAAATTCTGAAAGTACCG 59.844 41.667 0.00 0.00 33.76 4.02
2420 3116 7.975616 GCTTTATGCATCCAAATTCTGAAAGTA 59.024 33.333 0.19 0.00 42.31 2.24
2428 3129 6.580041 CAGATACGCTTTATGCATCCAAATTC 59.420 38.462 0.19 0.00 43.06 2.17
2432 3133 4.273235 CACAGATACGCTTTATGCATCCAA 59.727 41.667 0.19 0.00 43.06 3.53
2452 3153 7.365840 TGTATTGTCGCAATGTTTATACACA 57.634 32.000 13.17 0.00 37.03 3.72
2511 3212 1.605712 GCTACTTGCTCGTGTGTTCCT 60.606 52.381 0.00 0.00 38.95 3.36
2539 3240 0.814010 AGTGCAGGTGTGAACGGAAC 60.814 55.000 0.00 0.00 37.30 3.62
2540 3241 0.753867 TAGTGCAGGTGTGAACGGAA 59.246 50.000 0.00 0.00 37.30 4.30
2541 3242 0.032952 GTAGTGCAGGTGTGAACGGA 59.967 55.000 0.00 0.00 37.30 4.69
2542 3243 0.949105 GGTAGTGCAGGTGTGAACGG 60.949 60.000 0.00 0.00 37.30 4.44
2543 3244 0.033504 AGGTAGTGCAGGTGTGAACG 59.966 55.000 0.00 0.00 37.30 3.95
2544 3245 1.797025 GAGGTAGTGCAGGTGTGAAC 58.203 55.000 0.00 0.00 31.21 3.18
2545 3246 0.317160 CGAGGTAGTGCAGGTGTGAA 59.683 55.000 0.00 0.00 0.00 3.18
2546 3247 1.964448 CGAGGTAGTGCAGGTGTGA 59.036 57.895 0.00 0.00 0.00 3.58
2547 3248 1.738099 GCGAGGTAGTGCAGGTGTG 60.738 63.158 0.00 0.00 0.00 3.82
2548 3249 2.657237 GCGAGGTAGTGCAGGTGT 59.343 61.111 0.00 0.00 0.00 4.16
2549 3250 2.125512 GGCGAGGTAGTGCAGGTG 60.126 66.667 0.00 0.00 0.00 4.00
2550 3251 3.760035 CGGCGAGGTAGTGCAGGT 61.760 66.667 0.00 0.00 0.00 4.00
2551 3252 4.514577 CCGGCGAGGTAGTGCAGG 62.515 72.222 9.30 0.00 39.98 4.85
2568 3269 0.462047 CAGATTAGGGCGGTGGTCAC 60.462 60.000 0.00 0.00 0.00 3.67
2569 3270 1.904771 CAGATTAGGGCGGTGGTCA 59.095 57.895 0.00 0.00 0.00 4.02
2570 3271 1.523938 GCAGATTAGGGCGGTGGTC 60.524 63.158 0.00 0.00 0.00 4.02
2571 3272 1.635817 ATGCAGATTAGGGCGGTGGT 61.636 55.000 0.00 0.00 0.00 4.16
2572 3273 0.396435 TATGCAGATTAGGGCGGTGG 59.604 55.000 0.00 0.00 0.00 4.61
2573 3274 2.479566 ATATGCAGATTAGGGCGGTG 57.520 50.000 0.00 0.00 0.00 4.94
2574 3275 3.073062 AGAAATATGCAGATTAGGGCGGT 59.927 43.478 7.05 0.00 0.00 5.68
2575 3276 3.679389 AGAAATATGCAGATTAGGGCGG 58.321 45.455 7.05 0.00 0.00 6.13
2576 3277 3.686726 GGAGAAATATGCAGATTAGGGCG 59.313 47.826 7.05 0.00 0.00 6.13
2577 3278 4.013050 GGGAGAAATATGCAGATTAGGGC 58.987 47.826 7.05 0.00 0.00 5.19
2578 3279 4.568592 GGGGGAGAAATATGCAGATTAGGG 60.569 50.000 7.05 0.00 0.00 3.53
2579 3280 4.290722 AGGGGGAGAAATATGCAGATTAGG 59.709 45.833 7.05 0.00 0.00 2.69
2580 3281 5.250313 AGAGGGGGAGAAATATGCAGATTAG 59.750 44.000 7.05 0.00 0.00 1.73
2581 3282 5.013495 CAGAGGGGGAGAAATATGCAGATTA 59.987 44.000 7.05 0.00 0.00 1.75
2582 3283 3.986134 AGAGGGGGAGAAATATGCAGATT 59.014 43.478 0.00 0.00 0.00 2.40
2583 3284 3.330110 CAGAGGGGGAGAAATATGCAGAT 59.670 47.826 0.00 0.00 0.00 2.90
2584 3285 2.707791 CAGAGGGGGAGAAATATGCAGA 59.292 50.000 0.00 0.00 0.00 4.26
2585 3286 2.813354 GCAGAGGGGGAGAAATATGCAG 60.813 54.545 0.00 0.00 30.51 4.41
2586 3287 1.143684 GCAGAGGGGGAGAAATATGCA 59.856 52.381 0.00 0.00 30.51 3.96
2587 3288 1.546548 GGCAGAGGGGGAGAAATATGC 60.547 57.143 0.00 0.00 0.00 3.14
2588 3289 2.061061 AGGCAGAGGGGGAGAAATATG 58.939 52.381 0.00 0.00 0.00 1.78
2589 3290 2.522013 AGGCAGAGGGGGAGAAATAT 57.478 50.000 0.00 0.00 0.00 1.28
2590 3291 2.690840 GTAGGCAGAGGGGGAGAAATA 58.309 52.381 0.00 0.00 0.00 1.40
2591 3292 1.512735 GTAGGCAGAGGGGGAGAAAT 58.487 55.000 0.00 0.00 0.00 2.17
2592 3293 0.976073 CGTAGGCAGAGGGGGAGAAA 60.976 60.000 0.00 0.00 0.00 2.52
2593 3294 1.381327 CGTAGGCAGAGGGGGAGAA 60.381 63.158 0.00 0.00 0.00 2.87
2594 3295 2.279073 CGTAGGCAGAGGGGGAGA 59.721 66.667 0.00 0.00 0.00 3.71
2595 3296 2.840102 CCGTAGGCAGAGGGGGAG 60.840 72.222 0.00 0.00 46.14 4.30
2604 3305 3.629883 CGCCAACGTACCGTAGGCA 62.630 63.158 12.08 0.00 45.47 4.75
2605 3306 2.882301 CGCCAACGTACCGTAGGC 60.882 66.667 0.00 0.00 44.16 3.93
2607 3308 2.156446 CAGCGCCAACGTACCGTAG 61.156 63.158 2.29 0.00 39.99 3.51
2608 3309 2.126385 CAGCGCCAACGTACCGTA 60.126 61.111 2.29 0.00 39.99 4.02
2611 3312 3.488090 GAGCAGCGCCAACGTACC 61.488 66.667 2.29 0.00 42.83 3.34
2612 3313 3.488090 GGAGCAGCGCCAACGTAC 61.488 66.667 10.86 0.00 42.83 3.67
2630 3331 2.853914 GGAAGCGACGTTGCTGAC 59.146 61.111 30.41 24.44 46.60 3.51
2631 3332 2.733218 CGGAAGCGACGTTGCTGA 60.733 61.111 30.41 0.00 46.60 4.26
2632 3333 3.036084 ACGGAAGCGACGTTGCTG 61.036 61.111 30.41 19.96 46.60 4.41
2634 3335 4.072088 CCACGGAAGCGACGTTGC 62.072 66.667 20.54 20.54 43.58 4.17
2635 3336 4.072088 GCCACGGAAGCGACGTTG 62.072 66.667 0.00 0.00 43.58 4.10
2642 3343 4.344865 TTGAGGGGCCACGGAAGC 62.345 66.667 4.39 0.00 0.00 3.86
2643 3344 2.359975 GTTGAGGGGCCACGGAAG 60.360 66.667 4.39 0.00 0.00 3.46
2644 3345 2.852075 AGTTGAGGGGCCACGGAA 60.852 61.111 4.39 0.00 0.00 4.30
2645 3346 3.636231 CAGTTGAGGGGCCACGGA 61.636 66.667 4.39 0.00 0.00 4.69
2651 3352 2.252072 TATGTCGGCAGTTGAGGGGC 62.252 60.000 0.00 0.00 0.00 5.80
2652 3353 0.251916 TTATGTCGGCAGTTGAGGGG 59.748 55.000 0.00 0.00 0.00 4.79
2653 3354 1.207089 TCTTATGTCGGCAGTTGAGGG 59.793 52.381 0.00 0.00 0.00 4.30
2654 3355 2.672961 TCTTATGTCGGCAGTTGAGG 57.327 50.000 0.00 0.00 0.00 3.86
2655 3356 2.673368 GGTTCTTATGTCGGCAGTTGAG 59.327 50.000 0.00 0.00 0.00 3.02
2656 3357 2.037902 TGGTTCTTATGTCGGCAGTTGA 59.962 45.455 0.00 0.00 0.00 3.18
2657 3358 2.159627 GTGGTTCTTATGTCGGCAGTTG 59.840 50.000 0.00 0.00 0.00 3.16
2658 3359 2.423577 GTGGTTCTTATGTCGGCAGTT 58.576 47.619 0.00 0.00 0.00 3.16
2659 3360 1.338769 GGTGGTTCTTATGTCGGCAGT 60.339 52.381 0.00 0.00 0.00 4.40
2660 3361 1.369625 GGTGGTTCTTATGTCGGCAG 58.630 55.000 0.00 0.00 0.00 4.85
2661 3362 0.390603 CGGTGGTTCTTATGTCGGCA 60.391 55.000 0.00 0.00 0.00 5.69
2662 3363 0.108520 TCGGTGGTTCTTATGTCGGC 60.109 55.000 0.00 0.00 0.00 5.54
2663 3364 2.201732 CATCGGTGGTTCTTATGTCGG 58.798 52.381 0.00 0.00 0.00 4.79
2664 3365 1.593006 GCATCGGTGGTTCTTATGTCG 59.407 52.381 0.00 0.00 0.00 4.35
2665 3366 1.940613 GGCATCGGTGGTTCTTATGTC 59.059 52.381 0.00 0.00 0.00 3.06
2666 3367 1.742411 CGGCATCGGTGGTTCTTATGT 60.742 52.381 0.00 0.00 0.00 2.29
2667 3368 0.937304 CGGCATCGGTGGTTCTTATG 59.063 55.000 0.00 0.00 0.00 1.90
2668 3369 0.828022 TCGGCATCGGTGGTTCTTAT 59.172 50.000 0.00 0.00 36.95 1.73
2669 3370 0.174845 CTCGGCATCGGTGGTTCTTA 59.825 55.000 0.00 0.00 36.95 2.10
2670 3371 1.079127 CTCGGCATCGGTGGTTCTT 60.079 57.895 0.00 0.00 36.95 2.52
2671 3372 2.579201 CTCGGCATCGGTGGTTCT 59.421 61.111 0.00 0.00 36.95 3.01
2672 3373 3.195698 GCTCGGCATCGGTGGTTC 61.196 66.667 0.00 0.00 36.95 3.62
2673 3374 3.254024 AAGCTCGGCATCGGTGGTT 62.254 57.895 0.00 0.00 36.95 3.67
2674 3375 3.665675 GAAGCTCGGCATCGGTGGT 62.666 63.158 0.00 0.00 36.95 4.16
2675 3376 2.892425 GAAGCTCGGCATCGGTGG 60.892 66.667 0.00 0.00 36.95 4.61
2676 3377 2.892425 GGAAGCTCGGCATCGGTG 60.892 66.667 0.00 0.00 36.95 4.94
2677 3378 4.162690 GGGAAGCTCGGCATCGGT 62.163 66.667 0.00 0.00 36.95 4.69
2678 3379 2.947938 ATTGGGAAGCTCGGCATCGG 62.948 60.000 0.00 0.00 36.95 4.18
2679 3380 1.502163 GATTGGGAAGCTCGGCATCG 61.502 60.000 0.00 0.00 37.82 3.84
2680 3381 0.179034 AGATTGGGAAGCTCGGCATC 60.179 55.000 0.00 0.00 0.00 3.91
2681 3382 0.179034 GAGATTGGGAAGCTCGGCAT 60.179 55.000 0.00 0.00 33.86 4.40
2682 3383 1.221840 GAGATTGGGAAGCTCGGCA 59.778 57.895 0.00 0.00 33.86 5.69
2683 3384 4.132999 GAGATTGGGAAGCTCGGC 57.867 61.111 0.00 0.00 33.86 5.54
2686 3387 2.025887 TGGGAAAGAGATTGGGAAGCTC 60.026 50.000 0.00 0.00 44.03 4.09
2687 3388 1.995542 TGGGAAAGAGATTGGGAAGCT 59.004 47.619 0.00 0.00 0.00 3.74
2688 3389 2.514458 TGGGAAAGAGATTGGGAAGC 57.486 50.000 0.00 0.00 0.00 3.86
2689 3390 4.864726 AGAATGGGAAAGAGATTGGGAAG 58.135 43.478 0.00 0.00 0.00 3.46
2690 3391 4.953781 AGAATGGGAAAGAGATTGGGAA 57.046 40.909 0.00 0.00 0.00 3.97
2691 3392 4.953781 AAGAATGGGAAAGAGATTGGGA 57.046 40.909 0.00 0.00 0.00 4.37
2692 3393 4.774200 ACAAAGAATGGGAAAGAGATTGGG 59.226 41.667 0.00 0.00 0.00 4.12
2693 3394 5.990120 ACAAAGAATGGGAAAGAGATTGG 57.010 39.130 0.00 0.00 0.00 3.16
2694 3395 7.664758 AGAAACAAAGAATGGGAAAGAGATTG 58.335 34.615 0.00 0.00 0.00 2.67
2695 3396 7.846101 AGAAACAAAGAATGGGAAAGAGATT 57.154 32.000 0.00 0.00 0.00 2.40
2696 3397 8.166726 AGTAGAAACAAAGAATGGGAAAGAGAT 58.833 33.333 0.00 0.00 0.00 2.75
2697 3398 7.518188 AGTAGAAACAAAGAATGGGAAAGAGA 58.482 34.615 0.00 0.00 0.00 3.10
2698 3399 7.751768 AGTAGAAACAAAGAATGGGAAAGAG 57.248 36.000 0.00 0.00 0.00 2.85
2699 3400 7.470009 GCAAGTAGAAACAAAGAATGGGAAAGA 60.470 37.037 0.00 0.00 0.00 2.52
2700 3401 6.642540 GCAAGTAGAAACAAAGAATGGGAAAG 59.357 38.462 0.00 0.00 0.00 2.62
2701 3402 6.512297 GCAAGTAGAAACAAAGAATGGGAAA 58.488 36.000 0.00 0.00 0.00 3.13
2702 3403 5.278266 CGCAAGTAGAAACAAAGAATGGGAA 60.278 40.000 0.00 0.00 0.00 3.97
2703 3404 4.215399 CGCAAGTAGAAACAAAGAATGGGA 59.785 41.667 0.00 0.00 0.00 4.37
2704 3405 4.475944 CGCAAGTAGAAACAAAGAATGGG 58.524 43.478 0.00 0.00 0.00 4.00
2721 3422 3.745332 TTTCATATGCAGTGACGCAAG 57.255 42.857 6.24 1.39 46.87 4.01
2722 3423 4.413969 CAATTTCATATGCAGTGACGCAA 58.586 39.130 6.24 0.00 46.87 4.85
2723 3424 6.159693 TGCAATTTCATATGCAGTGACGCA 62.160 41.667 4.22 4.76 46.87 5.24
2724 3425 2.785477 GCAATTTCATATGCAGTGACGC 59.215 45.455 4.22 2.68 42.12 5.19
2725 3426 4.018649 TGCAATTTCATATGCAGTGACG 57.981 40.909 4.22 0.00 46.87 4.35
2731 3432 7.256012 ACATATCCATGTGCAATTTCATATGCA 60.256 33.333 8.88 0.00 43.89 3.96
2732 3433 7.094631 ACATATCCATGTGCAATTTCATATGC 58.905 34.615 8.88 0.00 43.89 3.14
2746 3447 5.625197 GCCAAAAGAAAGCACATATCCATGT 60.625 40.000 0.00 0.00 46.58 3.21
2747 3448 4.807304 GCCAAAAGAAAGCACATATCCATG 59.193 41.667 0.00 0.00 38.21 3.66
2748 3449 4.467082 TGCCAAAAGAAAGCACATATCCAT 59.533 37.500 0.00 0.00 0.00 3.41
2749 3450 3.831333 TGCCAAAAGAAAGCACATATCCA 59.169 39.130 0.00 0.00 0.00 3.41
2750 3451 4.454728 TGCCAAAAGAAAGCACATATCC 57.545 40.909 0.00 0.00 0.00 2.59
2751 3452 6.101332 TGATTGCCAAAAGAAAGCACATATC 58.899 36.000 0.00 0.00 35.96 1.63
2752 3453 6.040209 TGATTGCCAAAAGAAAGCACATAT 57.960 33.333 0.00 0.00 35.96 1.78
2753 3454 5.465532 TGATTGCCAAAAGAAAGCACATA 57.534 34.783 0.00 0.00 35.96 2.29
2754 3455 4.339872 TGATTGCCAAAAGAAAGCACAT 57.660 36.364 0.00 0.00 35.96 3.21
2755 3456 3.815856 TGATTGCCAAAAGAAAGCACA 57.184 38.095 0.00 0.00 35.96 4.57
2757 3458 3.719924 CAGTGATTGCCAAAAGAAAGCA 58.280 40.909 0.00 0.00 33.97 3.91
2770 3471 3.853831 TGTATTTGCAGGCAGTGATTG 57.146 42.857 0.00 0.00 0.00 2.67
2771 3472 3.765511 ACATGTATTTGCAGGCAGTGATT 59.234 39.130 0.00 0.00 0.00 2.57
2772 3473 3.359033 ACATGTATTTGCAGGCAGTGAT 58.641 40.909 0.00 0.00 0.00 3.06
2773 3474 2.794103 ACATGTATTTGCAGGCAGTGA 58.206 42.857 0.00 0.00 0.00 3.41
2774 3475 3.488047 GCTACATGTATTTGCAGGCAGTG 60.488 47.826 5.91 0.00 0.00 3.66
2775 3476 2.684881 GCTACATGTATTTGCAGGCAGT 59.315 45.455 5.91 0.00 0.00 4.40
2776 3477 2.033801 GGCTACATGTATTTGCAGGCAG 59.966 50.000 15.16 0.18 36.01 4.85
2777 3478 2.023673 GGCTACATGTATTTGCAGGCA 58.976 47.619 15.16 0.00 36.01 4.75
2778 3479 2.023673 TGGCTACATGTATTTGCAGGC 58.976 47.619 15.16 12.66 36.39 4.85
2779 3480 2.033801 GCTGGCTACATGTATTTGCAGG 59.966 50.000 15.16 9.17 0.00 4.85
2780 3481 2.684374 TGCTGGCTACATGTATTTGCAG 59.316 45.455 15.16 11.69 0.00 4.41
2781 3482 2.720915 TGCTGGCTACATGTATTTGCA 58.279 42.857 15.16 14.86 0.00 4.08
2782 3483 3.635331 CATGCTGGCTACATGTATTTGC 58.365 45.455 5.91 6.53 40.04 3.68
2789 3490 3.002965 CATGTACACATGCTGGCTACATG 59.997 47.826 15.68 15.68 45.92 3.21
2790 3491 3.208594 CATGTACACATGCTGGCTACAT 58.791 45.455 9.28 0.15 45.92 2.29
2791 3492 2.631267 CATGTACACATGCTGGCTACA 58.369 47.619 9.28 0.00 45.92 2.74
2804 3505 9.546428 CCATTTATCTCTATCAACACATGTACA 57.454 33.333 0.00 0.00 0.00 2.90
2805 3506 9.764363 TCCATTTATCTCTATCAACACATGTAC 57.236 33.333 0.00 0.00 0.00 2.90
2806 3507 9.987272 CTCCATTTATCTCTATCAACACATGTA 57.013 33.333 0.00 0.00 0.00 2.29
2807 3508 8.489489 ACTCCATTTATCTCTATCAACACATGT 58.511 33.333 0.00 0.00 0.00 3.21
2808 3509 8.771766 CACTCCATTTATCTCTATCAACACATG 58.228 37.037 0.00 0.00 0.00 3.21
2809 3510 8.489489 ACACTCCATTTATCTCTATCAACACAT 58.511 33.333 0.00 0.00 0.00 3.21
2810 3511 7.765819 CACACTCCATTTATCTCTATCAACACA 59.234 37.037 0.00 0.00 0.00 3.72
2811 3512 7.254590 GCACACTCCATTTATCTCTATCAACAC 60.255 40.741 0.00 0.00 0.00 3.32
2812 3513 6.763135 GCACACTCCATTTATCTCTATCAACA 59.237 38.462 0.00 0.00 0.00 3.33
2813 3514 6.989169 AGCACACTCCATTTATCTCTATCAAC 59.011 38.462 0.00 0.00 0.00 3.18
2814 3515 6.988580 CAGCACACTCCATTTATCTCTATCAA 59.011 38.462 0.00 0.00 0.00 2.57
2815 3516 6.519382 CAGCACACTCCATTTATCTCTATCA 58.481 40.000 0.00 0.00 0.00 2.15
2816 3517 5.407995 GCAGCACACTCCATTTATCTCTATC 59.592 44.000 0.00 0.00 0.00 2.08
2817 3518 5.303971 GCAGCACACTCCATTTATCTCTAT 58.696 41.667 0.00 0.00 0.00 1.98
2818 3519 4.697514 GCAGCACACTCCATTTATCTCTA 58.302 43.478 0.00 0.00 0.00 2.43
2819 3520 3.539604 GCAGCACACTCCATTTATCTCT 58.460 45.455 0.00 0.00 0.00 3.10
2820 3521 2.286294 CGCAGCACACTCCATTTATCTC 59.714 50.000 0.00 0.00 0.00 2.75
2846 3547 1.075542 GTGATTTGTGGATCGACGCA 58.924 50.000 3.26 0.00 0.00 5.24
2849 3550 5.294306 ACATATGTGTGATTTGTGGATCGAC 59.706 40.000 7.78 0.12 37.14 4.20
2851 3552 5.294060 TGACATATGTGTGATTTGTGGATCG 59.706 40.000 14.43 0.00 39.09 3.69
2886 3587 0.394352 ACCCAGGCAACGAATCATCC 60.394 55.000 0.00 0.00 46.39 3.51
2901 3602 5.726980 ATTACGAGTAACTTGTACACCCA 57.273 39.130 0.00 0.00 30.91 4.51
2909 3610 8.227791 AGCATGTTGTTTATTACGAGTAACTTG 58.772 33.333 0.00 0.00 0.00 3.16
2910 3611 8.319143 AGCATGTTGTTTATTACGAGTAACTT 57.681 30.769 0.00 0.00 0.00 2.66
2937 3641 6.375455 CCCTGATAGTTTTGCATCAAAGTAGT 59.625 38.462 5.05 0.00 34.72 2.73
2997 3701 5.047590 TCACATACGCATAGATCCGGTAATT 60.048 40.000 0.00 0.00 0.00 1.40
3004 3708 7.293745 CAGAAAATTCACATACGCATAGATCC 58.706 38.462 0.00 0.00 0.00 3.36
3015 3719 7.039152 TGGAATTGAAGGCAGAAAATTCACATA 60.039 33.333 13.02 0.00 39.63 2.29
3020 3724 9.688592 CTATATGGAATTGAAGGCAGAAAATTC 57.311 33.333 0.00 0.00 37.98 2.17
3065 3769 1.153978 CACAATCACACCGGCATGC 60.154 57.895 9.90 9.90 0.00 4.06
3071 3775 1.194547 GCAGTGTACACAATCACACCG 59.805 52.381 27.06 5.61 44.94 4.94
3074 3778 5.762711 ACTTATTGCAGTGTACACAATCACA 59.237 36.000 27.06 14.10 35.68 3.58
3076 3780 7.971183 TTACTTATTGCAGTGTACACAATCA 57.029 32.000 27.06 17.52 35.68 2.57
3087 3791 9.461312 TGGAAATGTTAGATTACTTATTGCAGT 57.539 29.630 0.00 0.00 0.00 4.40
3095 3799 7.918076 TCCTGAGTGGAAATGTTAGATTACTT 58.082 34.615 0.00 0.00 42.94 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.