Multiple sequence alignment - TraesCS4A01G496300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G496300 chr4A 100.000 2896 0 0 1 2896 742791290 742788395 0.000000e+00 5349.0
1 TraesCS4A01G496300 chr4A 80.903 576 98 10 1818 2383 469245735 469246308 7.360000e-121 444.0
2 TraesCS4A01G496300 chr7D 92.909 2186 115 13 451 2603 1187982 1185804 0.000000e+00 3142.0
3 TraesCS4A01G496300 chr7D 86.830 448 25 8 44 457 1188625 1188178 1.210000e-128 470.0
4 TraesCS4A01G496300 chr7D 92.262 168 13 0 2599 2766 39001282 39001449 3.730000e-59 239.0
5 TraesCS4A01G496300 chr7D 89.189 185 18 2 2585 2768 546102339 546102522 2.240000e-56 230.0
6 TraesCS4A01G496300 chr7D 92.481 133 8 2 2765 2896 1185805 1185674 3.810000e-44 189.0
7 TraesCS4A01G496300 chrUn 90.282 1842 127 17 789 2603 316654694 316652878 0.000000e+00 2362.0
8 TraesCS4A01G496300 chrUn 90.207 1838 128 17 793 2603 51485698 51487510 0.000000e+00 2350.0
9 TraesCS4A01G496300 chrUn 89.439 1837 129 24 791 2603 269322146 269323941 0.000000e+00 2257.0
10 TraesCS4A01G496300 chrUn 89.414 1842 124 19 786 2603 245963231 245965025 0.000000e+00 2255.0
11 TraesCS4A01G496300 chrUn 85.789 380 28 9 1 355 366019527 366019149 2.110000e-101 379.0
12 TraesCS4A01G496300 chrUn 93.233 133 7 2 2765 2896 245965024 245965155 8.190000e-46 195.0
13 TraesCS4A01G496300 chrUn 92.481 133 8 2 2765 2896 51487509 51487640 3.810000e-44 189.0
14 TraesCS4A01G496300 chrUn 92.481 133 8 2 2765 2896 269323940 269324071 3.810000e-44 189.0
15 TraesCS4A01G496300 chrUn 92.481 133 8 2 2765 2896 316652879 316652748 3.810000e-44 189.0
16 TraesCS4A01G496300 chrUn 94.000 100 5 1 2798 2896 351031724 351031625 1.800000e-32 150.0
17 TraesCS4A01G496300 chr4D 80.208 576 102 10 1818 2383 106679342 106678769 3.450000e-114 422.0
18 TraesCS4A01G496300 chr3D 91.908 173 14 0 2597 2769 217587729 217587557 2.880000e-60 243.0
19 TraesCS4A01G496300 chr3D 89.418 189 16 3 2602 2787 304588101 304588288 4.820000e-58 235.0
20 TraesCS4A01G496300 chr3D 86.473 207 21 6 2586 2787 78373275 78373479 1.350000e-53 220.0
21 TraesCS4A01G496300 chr6D 89.305 187 14 4 2589 2771 307341051 307340867 2.240000e-56 230.0
22 TraesCS4A01G496300 chr6A 89.189 185 19 1 2594 2777 297678618 297678802 2.240000e-56 230.0
23 TraesCS4A01G496300 chr2D 89.247 186 16 3 2589 2771 213176502 213176318 2.240000e-56 230.0
24 TraesCS4A01G496300 chr1D 88.482 191 18 3 2589 2776 259974621 259974432 8.070000e-56 228.0
25 TraesCS4A01G496300 chr1A 94.231 52 3 0 1574 1625 6438655 6438604 2.390000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G496300 chr4A 742788395 742791290 2895 True 5349.0 5349 100.0000 1 2896 1 chr4A.!!$R1 2895
1 TraesCS4A01G496300 chr4A 469245735 469246308 573 False 444.0 444 80.9030 1818 2383 1 chr4A.!!$F1 565
2 TraesCS4A01G496300 chr7D 1185674 1188625 2951 True 1267.0 3142 90.7400 44 2896 3 chr7D.!!$R1 2852
3 TraesCS4A01G496300 chrUn 316652748 316654694 1946 True 1275.5 2362 91.3815 789 2896 2 chrUn.!!$R3 2107
4 TraesCS4A01G496300 chrUn 51485698 51487640 1942 False 1269.5 2350 91.3440 793 2896 2 chrUn.!!$F1 2103
5 TraesCS4A01G496300 chrUn 245963231 245965155 1924 False 1225.0 2255 91.3235 786 2896 2 chrUn.!!$F2 2110
6 TraesCS4A01G496300 chrUn 269322146 269324071 1925 False 1223.0 2257 90.9600 791 2896 2 chrUn.!!$F3 2105
7 TraesCS4A01G496300 chr4D 106678769 106679342 573 True 422.0 422 80.2080 1818 2383 1 chr4D.!!$R1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
727 976 0.368907 GTAATGTACGTGCACCAGCG 59.631 55.0 8.99 1.4 46.23 5.18 F
1637 1911 0.321653 AGGGTGTCATCGCCTTCAAC 60.322 55.0 0.00 0.0 43.20 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2002 0.183014 AGTAGCTAGGTAGGCGCAGA 59.817 55.0 10.83 0.0 34.52 4.26 R
2701 2987 1.269958 AGTGACTACATGCAGAGCCA 58.730 50.0 0.00 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.606040 AAAAATTGATGACACTTAATTGGTGG 57.394 30.769 14.74 1.92 38.83 4.61
26 27 6.916360 AATTGATGACACTTAATTGGTGGT 57.084 33.333 14.74 4.30 38.83 4.16
27 28 5.703978 TTGATGACACTTAATTGGTGGTG 57.296 39.130 14.74 8.55 38.83 4.17
28 29 3.505680 TGATGACACTTAATTGGTGGTGC 59.494 43.478 14.74 7.04 38.83 5.01
29 30 2.235016 TGACACTTAATTGGTGGTGCC 58.765 47.619 14.74 1.61 38.83 5.01
39 40 1.333177 TGGTGGTGCCATTTTGTACC 58.667 50.000 0.00 0.00 43.61 3.34
40 41 1.133325 TGGTGGTGCCATTTTGTACCT 60.133 47.619 0.00 0.00 43.61 3.08
41 42 1.967779 GGTGGTGCCATTTTGTACCTT 59.032 47.619 0.00 0.00 37.17 3.50
42 43 2.029380 GGTGGTGCCATTTTGTACCTTC 60.029 50.000 0.00 0.00 37.17 3.46
61 66 2.770447 TCAAGTATGGGTAGGGATGCA 58.230 47.619 0.00 0.00 0.00 3.96
83 92 5.346822 GCAGTGGCTCATTTATGTTTTTCAG 59.653 40.000 0.00 0.00 36.96 3.02
110 119 1.984026 CCCCAGCCCATTGAACACC 60.984 63.158 0.00 0.00 0.00 4.16
115 124 2.357050 CCAGCCCATTGAACACCTATCA 60.357 50.000 0.00 0.00 0.00 2.15
179 188 5.820404 TCTGCATTCAGAGATATCCATGT 57.180 39.130 0.00 0.00 43.95 3.21
180 189 5.548406 TCTGCATTCAGAGATATCCATGTG 58.452 41.667 0.00 0.00 43.95 3.21
181 190 5.306160 TCTGCATTCAGAGATATCCATGTGA 59.694 40.000 0.00 0.00 43.95 3.58
182 191 6.013639 TCTGCATTCAGAGATATCCATGTGAT 60.014 38.462 0.00 0.00 43.95 3.06
186 195 9.006839 GCATTCAGAGATATCCATGTGATTTTA 57.993 33.333 0.00 0.00 34.76 1.52
223 234 9.642327 TTATGGTTTCTTTGATTCACATGATTG 57.358 29.630 0.00 0.00 0.00 2.67
242 269 2.608623 TGGAGTGTCATGTCCTCTTGA 58.391 47.619 2.14 0.00 33.57 3.02
243 270 2.972021 TGGAGTGTCATGTCCTCTTGAA 59.028 45.455 2.14 0.00 33.57 2.69
283 318 6.749923 ACAGAAATTTAGATGGAAGAGTGC 57.250 37.500 0.00 0.00 0.00 4.40
305 340 5.702865 GCTTGATAGCACATGAAAACAAGA 58.297 37.500 18.00 0.00 46.95 3.02
407 442 8.166061 TCCCAATGATTTCCATCCTCTAAATAG 58.834 37.037 0.00 0.00 33.53 1.73
436 471 9.508567 GATCAAAGTTCTTAGCAATCCAAATAC 57.491 33.333 0.00 0.00 0.00 1.89
462 699 9.208022 CTCAAAAAGAAAAACCTATGGAATTCC 57.792 33.333 18.17 18.17 0.00 3.01
480 717 3.502123 TCCGTTGAATCAAAGGAACCT 57.498 42.857 24.48 0.00 45.78 3.50
506 743 3.949754 AGGTCGACGAGTATTGGTTATGA 59.050 43.478 9.92 0.00 0.00 2.15
508 745 4.916249 GGTCGACGAGTATTGGTTATGATC 59.084 45.833 9.92 0.00 0.00 2.92
517 754 7.194607 AGTATTGGTTATGATCTTTGATGCG 57.805 36.000 0.00 0.00 0.00 4.73
537 774 1.569072 GGAGGTGGGTGGGTGATATTT 59.431 52.381 0.00 0.00 0.00 1.40
616 863 1.098869 TTGTTCACACCGTTGCACAT 58.901 45.000 0.00 0.00 0.00 3.21
617 864 1.098869 TGTTCACACCGTTGCACATT 58.901 45.000 0.00 0.00 0.00 2.71
638 885 5.702622 TTGATTAACGATTGAAGCTCTCG 57.297 39.130 0.00 0.00 38.34 4.04
684 933 1.376543 CACTCAGTGATGTCATGCCC 58.623 55.000 0.00 0.00 35.23 5.36
690 939 1.419012 AGTGATGTCATGCCCGATGAT 59.581 47.619 0.00 0.00 43.20 2.45
710 959 6.834168 TGATGTCATCAACACTGTAGAGTA 57.166 37.500 13.25 0.00 41.75 2.59
727 976 0.368907 GTAATGTACGTGCACCAGCG 59.631 55.000 8.99 1.40 46.23 5.18
736 985 3.364441 GCACCAGCGTCATTGCCA 61.364 61.111 0.00 0.00 34.65 4.92
737 986 2.918345 GCACCAGCGTCATTGCCAA 61.918 57.895 0.00 0.00 34.65 4.52
749 998 5.451908 CGTCATTGCCAATCATAATGTACC 58.548 41.667 0.00 0.00 34.35 3.34
753 1002 6.262944 TCATTGCCAATCATAATGTACCACTC 59.737 38.462 0.00 0.00 34.35 3.51
758 1007 4.873746 ATCATAATGTACCACTCCCTCG 57.126 45.455 0.00 0.00 0.00 4.63
911 1161 1.621317 TGAGAGGCACGTATCAACCAA 59.379 47.619 0.00 0.00 0.00 3.67
914 1164 3.270877 AGAGGCACGTATCAACCAATTC 58.729 45.455 0.00 0.00 0.00 2.17
1041 1310 2.147387 GGAGACCACCACCACCACT 61.147 63.158 0.00 0.00 0.00 4.00
1054 1323 2.149383 ACCACTCCTGCTGCCAAGA 61.149 57.895 0.00 0.00 0.00 3.02
1056 1325 1.675801 CACTCCTGCTGCCAAGAGA 59.324 57.895 14.97 0.00 33.97 3.10
1057 1326 0.673022 CACTCCTGCTGCCAAGAGAC 60.673 60.000 14.97 0.00 33.97 3.36
1146 1415 2.093658 CCACTTGTACGCCTACCAGAAT 60.094 50.000 1.77 0.00 0.00 2.40
1234 1503 0.531532 CCTCGCTGCTAATGACTGGG 60.532 60.000 0.00 0.00 0.00 4.45
1257 1526 1.144057 GTACGATGGTCCTGGCCAG 59.856 63.158 26.87 26.87 42.47 4.85
1278 1547 1.865788 ATGCAAACCTTGTCGCGCAT 61.866 50.000 8.75 0.00 35.36 4.73
1318 1587 3.181526 GCTAGCATGGCCAAAGAGT 57.818 52.632 10.96 0.00 36.10 3.24
1319 1588 0.737219 GCTAGCATGGCCAAAGAGTG 59.263 55.000 10.96 3.67 36.10 3.51
1332 1601 3.054878 CAAAGAGTGCTGGTTCATTTGC 58.945 45.455 0.00 0.00 0.00 3.68
1369 1638 7.648112 TCTTCGTCGATCAGAGGTTAATTATTG 59.352 37.037 0.00 0.00 36.24 1.90
1399 1668 8.001881 TGTCTAGCTTAACTATCTCTCTTTGG 57.998 38.462 0.00 0.00 0.00 3.28
1410 1679 9.981460 AACTATCTCTCTTTGGAATTTTACCAT 57.019 29.630 0.00 0.00 37.26 3.55
1434 1707 8.632679 CATATTAATGTTTGTACTGGAGCCATT 58.367 33.333 0.00 0.00 0.00 3.16
1475 1748 7.571080 TCAAACACCGTAAAGGAAATACTTT 57.429 32.000 0.00 0.00 45.00 2.66
1476 1749 7.419204 TCAAACACCGTAAAGGAAATACTTTG 58.581 34.615 0.77 0.00 45.00 2.77
1477 1750 5.366829 ACACCGTAAAGGAAATACTTTGC 57.633 39.130 0.77 0.00 45.00 3.68
1486 1759 9.489084 GTAAAGGAAATACTTTGCCTTGAAATT 57.511 29.630 0.77 0.00 40.44 1.82
1541 1814 5.633655 TTACAGGTTCCAGTTTCAAGGTA 57.366 39.130 0.00 0.00 0.00 3.08
1598 1871 1.303317 GGCAATCGTTGGTGGGACT 60.303 57.895 0.00 0.00 0.00 3.85
1619 1893 7.151587 GACTGGAGAGTTTGCATATGCACAG 62.152 48.000 29.58 28.29 41.23 3.66
1637 1911 0.321653 AGGGTGTCATCGCCTTCAAC 60.322 55.000 0.00 0.00 43.20 3.18
1646 1920 0.400213 TCGCCTTCAACAAGACCCAT 59.600 50.000 0.00 0.00 0.00 4.00
1652 1926 4.338879 CCTTCAACAAGACCCATCAATCT 58.661 43.478 0.00 0.00 0.00 2.40
1694 1968 2.416547 GCTTCATGTTCGTGCTATGTGT 59.583 45.455 0.00 0.00 0.00 3.72
1728 2002 1.141053 GACCTCTGGTGTGTTCCTTGT 59.859 52.381 0.00 0.00 35.25 3.16
1730 2004 1.417890 CCTCTGGTGTGTTCCTTGTCT 59.582 52.381 0.00 0.00 0.00 3.41
1779 2053 6.430000 TGTCCAATTCTCTAGCTTGGTTTTAC 59.570 38.462 0.00 0.00 40.28 2.01
1780 2054 6.655425 GTCCAATTCTCTAGCTTGGTTTTACT 59.345 38.462 0.00 0.00 40.28 2.24
1948 2223 7.172019 GTCATTGATTCACTTGCATTTTCCTTT 59.828 33.333 0.00 0.00 0.00 3.11
2061 2343 7.734924 TGACATCTTTTCATATATGAGCACC 57.265 36.000 14.86 2.89 38.19 5.01
2123 2405 6.037940 GTGATCTCTTTTCTTGCATGCAGATA 59.962 38.462 21.50 12.35 0.00 1.98
2156 2438 4.380655 CCTTCAGAGATCGTTACGGAAGTT 60.381 45.833 4.53 0.00 46.40 2.66
2234 2516 3.009695 CCCTCACCATTACCACAAACCTA 59.990 47.826 0.00 0.00 0.00 3.08
2256 2538 2.342650 CCGTACGGTCCCTTCGGAA 61.343 63.158 26.39 0.00 40.92 4.30
2293 2575 0.819259 TTCAGTGTTCCAGTGCAGGC 60.819 55.000 0.00 0.00 35.04 4.85
2333 2615 3.071459 CTTCGCGTGCGCTGGTAAG 62.071 63.158 9.73 3.86 39.59 2.34
2360 2642 2.181525 GCGCTCGGGGTTTACGTA 59.818 61.111 0.00 0.00 0.00 3.57
2372 2654 2.667969 GGTTTACGTACGTTCACCCATC 59.332 50.000 27.92 7.00 0.00 3.51
2385 2667 4.055710 TCACCCATCTCAACCTAGTACA 57.944 45.455 0.00 0.00 0.00 2.90
2391 2673 5.394738 CCATCTCAACCTAGTACATCCCTA 58.605 45.833 0.00 0.00 0.00 3.53
2435 2717 5.627499 TGTCTTCCATGTTTCTATGTTGC 57.373 39.130 0.00 0.00 0.00 4.17
2436 2718 5.069318 TGTCTTCCATGTTTCTATGTTGCA 58.931 37.500 0.00 0.00 0.00 4.08
2516 2801 5.181690 TGTTGGTTTTCTTATCAGCACAC 57.818 39.130 0.00 0.00 0.00 3.82
2517 2802 4.642437 TGTTGGTTTTCTTATCAGCACACA 59.358 37.500 0.00 0.00 0.00 3.72
2518 2803 5.215160 GTTGGTTTTCTTATCAGCACACAG 58.785 41.667 0.00 0.00 0.00 3.66
2519 2804 4.460263 TGGTTTTCTTATCAGCACACAGT 58.540 39.130 0.00 0.00 0.00 3.55
2533 2818 7.386059 TCAGCACACAGTTTCTCTTATCAATA 58.614 34.615 0.00 0.00 0.00 1.90
2536 2821 8.507249 AGCACACAGTTTCTCTTATCAATAAAC 58.493 33.333 0.00 0.00 0.00 2.01
2538 2823 7.957484 CACACAGTTTCTCTTATCAATAAACGG 59.043 37.037 0.00 0.00 35.67 4.44
2572 2858 6.524101 TTGTACCTTTGCAGAGAAACTTTT 57.476 33.333 5.68 0.00 0.00 2.27
2573 2859 6.524101 TGTACCTTTGCAGAGAAACTTTTT 57.476 33.333 5.68 0.00 0.00 1.94
2601 2887 8.850007 TCACGCTCACTATATTCTACTCTATT 57.150 34.615 0.00 0.00 0.00 1.73
2602 2888 9.939802 TCACGCTCACTATATTCTACTCTATTA 57.060 33.333 0.00 0.00 0.00 0.98
2603 2889 9.976255 CACGCTCACTATATTCTACTCTATTAC 57.024 37.037 0.00 0.00 0.00 1.89
2604 2890 9.947433 ACGCTCACTATATTCTACTCTATTACT 57.053 33.333 0.00 0.00 0.00 2.24
2614 2900 8.700439 ATTCTACTCTATTACTCCCTCTGTTC 57.300 38.462 0.00 0.00 0.00 3.18
2615 2901 6.603224 TCTACTCTATTACTCCCTCTGTTCC 58.397 44.000 0.00 0.00 0.00 3.62
2616 2902 5.475398 ACTCTATTACTCCCTCTGTTCCT 57.525 43.478 0.00 0.00 0.00 3.36
2617 2903 6.593759 ACTCTATTACTCCCTCTGTTCCTA 57.406 41.667 0.00 0.00 0.00 2.94
2618 2904 6.982899 ACTCTATTACTCCCTCTGTTCCTAA 58.017 40.000 0.00 0.00 0.00 2.69
2619 2905 7.420029 ACTCTATTACTCCCTCTGTTCCTAAA 58.580 38.462 0.00 0.00 0.00 1.85
2620 2906 8.068733 ACTCTATTACTCCCTCTGTTCCTAAAT 58.931 37.037 0.00 0.00 0.00 1.40
2621 2907 9.589461 CTCTATTACTCCCTCTGTTCCTAAATA 57.411 37.037 0.00 0.00 0.00 1.40
2628 2914 9.453830 ACTCCCTCTGTTCCTAAATATTTATCT 57.546 33.333 8.34 0.00 0.00 1.98
2656 2942 9.619316 TTTACAGATTTCAAATGAATTACCACG 57.381 29.630 0.00 0.00 33.54 4.94
2657 2943 7.214467 ACAGATTTCAAATGAATTACCACGT 57.786 32.000 0.00 0.00 33.54 4.49
2658 2944 8.330466 ACAGATTTCAAATGAATTACCACGTA 57.670 30.769 0.00 0.00 33.54 3.57
2659 2945 8.234546 ACAGATTTCAAATGAATTACCACGTAC 58.765 33.333 0.00 0.00 33.54 3.67
2660 2946 7.425309 CAGATTTCAAATGAATTACCACGTACG 59.575 37.037 15.01 15.01 33.54 3.67
2661 2947 5.533533 TTCAAATGAATTACCACGTACGG 57.466 39.130 21.06 8.46 0.00 4.02
2662 2948 4.818642 TCAAATGAATTACCACGTACGGA 58.181 39.130 21.06 0.00 0.00 4.69
2663 2949 5.421277 TCAAATGAATTACCACGTACGGAT 58.579 37.500 21.06 6.82 0.00 4.18
2664 2950 5.292345 TCAAATGAATTACCACGTACGGATG 59.708 40.000 21.06 9.60 0.00 3.51
2665 2951 3.872511 TGAATTACCACGTACGGATGT 57.127 42.857 21.06 15.02 0.00 3.06
2666 2952 4.979943 TGAATTACCACGTACGGATGTA 57.020 40.909 21.06 14.02 0.00 2.29
2667 2953 5.518848 TGAATTACCACGTACGGATGTAT 57.481 39.130 21.06 4.50 32.11 2.29
2668 2954 6.631971 TGAATTACCACGTACGGATGTATA 57.368 37.500 21.06 8.69 32.11 1.47
2669 2955 7.218228 TGAATTACCACGTACGGATGTATAT 57.782 36.000 21.06 8.96 32.11 0.86
2670 2956 8.334263 TGAATTACCACGTACGGATGTATATA 57.666 34.615 21.06 3.74 32.11 0.86
2671 2957 8.453320 TGAATTACCACGTACGGATGTATATAG 58.547 37.037 21.06 0.00 32.11 1.31
2672 2958 8.565896 AATTACCACGTACGGATGTATATAGA 57.434 34.615 21.06 3.08 32.11 1.98
2673 2959 5.869753 ACCACGTACGGATGTATATAGAC 57.130 43.478 21.06 0.00 32.11 2.59
2674 2960 5.308014 ACCACGTACGGATGTATATAGACA 58.692 41.667 21.06 2.07 32.11 3.41
2675 2961 5.942236 ACCACGTACGGATGTATATAGACAT 59.058 40.000 21.06 12.70 42.82 3.06
2676 2962 7.105588 ACCACGTACGGATGTATATAGACATA 58.894 38.462 21.06 0.00 40.18 2.29
2677 2963 7.772292 ACCACGTACGGATGTATATAGACATAT 59.228 37.037 21.06 5.08 40.18 1.78
2678 2964 8.618677 CCACGTACGGATGTATATAGACATATT 58.381 37.037 21.06 3.62 40.18 1.28
2679 2965 9.999009 CACGTACGGATGTATATAGACATATTT 57.001 33.333 21.06 3.30 40.18 1.40
2704 2990 6.690194 AGAGTGTAGATTCAATCATTTGGC 57.310 37.500 0.00 0.00 35.30 4.52
2705 2991 6.421485 AGAGTGTAGATTCAATCATTTGGCT 58.579 36.000 0.00 0.00 35.30 4.75
2706 2992 6.541641 AGAGTGTAGATTCAATCATTTGGCTC 59.458 38.462 0.00 0.28 35.30 4.70
2707 2993 6.421485 AGTGTAGATTCAATCATTTGGCTCT 58.579 36.000 0.00 0.00 33.44 4.09
2708 2994 6.318144 AGTGTAGATTCAATCATTTGGCTCTG 59.682 38.462 0.00 0.00 33.44 3.35
2709 2995 4.650754 AGATTCAATCATTTGGCTCTGC 57.349 40.909 0.00 0.00 33.44 4.26
2710 2996 4.021229 AGATTCAATCATTTGGCTCTGCA 58.979 39.130 0.00 0.00 33.44 4.41
2711 2997 4.649674 AGATTCAATCATTTGGCTCTGCAT 59.350 37.500 0.00 0.00 33.44 3.96
2712 2998 3.793797 TCAATCATTTGGCTCTGCATG 57.206 42.857 0.00 0.00 33.44 4.06
2713 2999 3.093814 TCAATCATTTGGCTCTGCATGT 58.906 40.909 0.00 0.00 33.44 3.21
2714 3000 4.271661 TCAATCATTTGGCTCTGCATGTA 58.728 39.130 0.00 0.00 33.44 2.29
2715 3001 4.337274 TCAATCATTTGGCTCTGCATGTAG 59.663 41.667 4.14 4.14 33.44 2.74
2716 3002 3.354948 TCATTTGGCTCTGCATGTAGT 57.645 42.857 10.80 0.00 0.00 2.73
2717 3003 3.273434 TCATTTGGCTCTGCATGTAGTC 58.727 45.455 10.80 4.26 0.00 2.59
2718 3004 2.857186 TTTGGCTCTGCATGTAGTCA 57.143 45.000 10.80 3.05 0.00 3.41
2719 3005 2.099141 TTGGCTCTGCATGTAGTCAC 57.901 50.000 10.80 3.04 0.00 3.67
2720 3006 1.269958 TGGCTCTGCATGTAGTCACT 58.730 50.000 10.80 0.00 0.00 3.41
2721 3007 1.625315 TGGCTCTGCATGTAGTCACTT 59.375 47.619 10.80 0.00 0.00 3.16
2722 3008 2.005451 GGCTCTGCATGTAGTCACTTG 58.995 52.381 10.80 0.00 33.92 3.16
2723 3009 2.613977 GGCTCTGCATGTAGTCACTTGT 60.614 50.000 10.80 0.00 33.46 3.16
2724 3010 3.368427 GGCTCTGCATGTAGTCACTTGTA 60.368 47.826 10.80 0.00 33.46 2.41
2725 3011 3.862267 GCTCTGCATGTAGTCACTTGTAG 59.138 47.826 10.80 0.00 41.16 2.74
2726 3012 4.380973 GCTCTGCATGTAGTCACTTGTAGA 60.381 45.833 10.80 9.78 44.02 2.59
2727 3013 5.714047 CTCTGCATGTAGTCACTTGTAGAA 58.286 41.667 10.80 0.00 44.84 2.10
2728 3014 6.096673 TCTGCATGTAGTCACTTGTAGAAA 57.903 37.500 10.80 0.00 43.61 2.52
2729 3015 6.701340 TCTGCATGTAGTCACTTGTAGAAAT 58.299 36.000 10.80 0.00 43.61 2.17
2730 3016 7.161404 TCTGCATGTAGTCACTTGTAGAAATT 58.839 34.615 10.80 0.00 43.61 1.82
2731 3017 7.661437 TCTGCATGTAGTCACTTGTAGAAATTT 59.339 33.333 10.80 0.00 43.61 1.82
2732 3018 7.806690 TGCATGTAGTCACTTGTAGAAATTTC 58.193 34.615 10.33 10.33 33.46 2.17
2733 3019 7.661437 TGCATGTAGTCACTTGTAGAAATTTCT 59.339 33.333 23.53 23.53 34.93 2.52
2734 3020 9.151471 GCATGTAGTCACTTGTAGAAATTTCTA 57.849 33.333 21.46 21.46 33.84 2.10
2761 3047 9.556030 GAAAGACAAATATTTAGAAACGAAGGG 57.444 33.333 0.00 0.00 0.00 3.95
2762 3048 8.857694 AAGACAAATATTTAGAAACGAAGGGA 57.142 30.769 0.00 0.00 0.00 4.20
2763 3049 8.494016 AGACAAATATTTAGAAACGAAGGGAG 57.506 34.615 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.210265 ACCACCAATTAAGTGTCATCAATTTTT 58.790 29.630 1.80 0.00 33.82 1.94
1 2 7.656948 CACCACCAATTAAGTGTCATCAATTTT 59.343 33.333 1.80 0.00 33.82 1.82
2 3 7.153985 CACCACCAATTAAGTGTCATCAATTT 58.846 34.615 1.80 0.00 33.82 1.82
3 4 6.690530 CACCACCAATTAAGTGTCATCAATT 58.309 36.000 1.80 0.00 35.94 2.32
4 5 5.336690 GCACCACCAATTAAGTGTCATCAAT 60.337 40.000 1.80 0.00 33.20 2.57
5 6 4.022416 GCACCACCAATTAAGTGTCATCAA 60.022 41.667 1.80 0.00 33.20 2.57
6 7 3.505680 GCACCACCAATTAAGTGTCATCA 59.494 43.478 1.80 0.00 33.20 3.07
7 8 3.119495 GGCACCACCAATTAAGTGTCATC 60.119 47.826 1.80 0.00 38.86 2.92
8 9 2.825532 GGCACCACCAATTAAGTGTCAT 59.174 45.455 1.80 0.00 38.86 3.06
9 10 2.235016 GGCACCACCAATTAAGTGTCA 58.765 47.619 1.80 0.00 38.86 3.58
21 22 1.627864 AGGTACAAAATGGCACCACC 58.372 50.000 0.00 0.00 39.84 4.61
22 23 2.625790 TGAAGGTACAAAATGGCACCAC 59.374 45.455 0.00 2.10 31.38 4.16
23 24 2.950781 TGAAGGTACAAAATGGCACCA 58.049 42.857 0.00 0.00 31.38 4.17
24 25 3.320826 ACTTGAAGGTACAAAATGGCACC 59.679 43.478 0.00 0.00 0.00 5.01
25 26 4.584327 ACTTGAAGGTACAAAATGGCAC 57.416 40.909 0.00 0.00 0.00 5.01
26 27 5.184864 CCATACTTGAAGGTACAAAATGGCA 59.815 40.000 0.00 0.00 36.98 4.92
27 28 5.394115 CCCATACTTGAAGGTACAAAATGGC 60.394 44.000 0.00 0.00 39.45 4.40
28 29 5.714806 ACCCATACTTGAAGGTACAAAATGG 59.285 40.000 0.00 0.00 39.91 3.16
29 30 6.834168 ACCCATACTTGAAGGTACAAAATG 57.166 37.500 0.00 0.00 0.00 2.32
30 31 7.116736 CCTACCCATACTTGAAGGTACAAAAT 58.883 38.462 0.00 0.00 33.70 1.82
31 32 6.478129 CCTACCCATACTTGAAGGTACAAAA 58.522 40.000 0.00 0.00 33.70 2.44
32 33 5.045432 CCCTACCCATACTTGAAGGTACAAA 60.045 44.000 0.00 0.00 33.70 2.83
33 34 4.472108 CCCTACCCATACTTGAAGGTACAA 59.528 45.833 0.00 0.00 33.70 2.41
34 35 4.035112 CCCTACCCATACTTGAAGGTACA 58.965 47.826 0.00 0.00 33.70 2.90
35 36 4.292643 TCCCTACCCATACTTGAAGGTAC 58.707 47.826 0.00 0.00 33.70 3.34
36 37 4.630382 TCCCTACCCATACTTGAAGGTA 57.370 45.455 0.00 0.00 33.70 3.08
37 38 3.502051 TCCCTACCCATACTTGAAGGT 57.498 47.619 0.00 0.00 36.36 3.50
38 39 3.496870 GCATCCCTACCCATACTTGAAGG 60.497 52.174 0.00 0.00 0.00 3.46
39 40 3.136443 TGCATCCCTACCCATACTTGAAG 59.864 47.826 0.00 0.00 0.00 3.02
40 41 3.119319 TGCATCCCTACCCATACTTGAA 58.881 45.455 0.00 0.00 0.00 2.69
41 42 2.705658 CTGCATCCCTACCCATACTTGA 59.294 50.000 0.00 0.00 0.00 3.02
42 43 2.439507 ACTGCATCCCTACCCATACTTG 59.560 50.000 0.00 0.00 0.00 3.16
61 66 6.265196 TGACTGAAAAACATAAATGAGCCACT 59.735 34.615 0.00 0.00 0.00 4.00
110 119 3.369892 CCACCTCAAACTGTCCCTGATAG 60.370 52.174 0.00 0.00 0.00 2.08
115 124 0.697854 ACCCACCTCAAACTGTCCCT 60.698 55.000 0.00 0.00 0.00 4.20
159 168 5.556006 TCACATGGATATCTCTGAATGCA 57.444 39.130 2.05 0.00 0.00 3.96
198 209 8.252417 CCAATCATGTGAATCAAAGAAACCATA 58.748 33.333 0.00 0.00 0.00 2.74
223 234 3.685139 TTCAAGAGGACATGACACTCC 57.315 47.619 0.00 0.00 31.70 3.85
258 293 8.103305 AGCACTCTTCCATCTAAATTTCTGTAA 58.897 33.333 0.00 0.00 0.00 2.41
264 299 7.951347 ATCAAGCACTCTTCCATCTAAATTT 57.049 32.000 0.00 0.00 0.00 1.82
283 318 7.137490 TCTCTTGTTTTCATGTGCTATCAAG 57.863 36.000 0.00 0.00 34.35 3.02
407 442 7.383102 TGGATTGCTAAGAACTTTGATCTTC 57.617 36.000 0.00 0.00 38.13 2.87
436 471 9.208022 GGAATTCCATAGGTTTTTCTTTTTGAG 57.792 33.333 20.04 0.00 35.64 3.02
462 699 3.064207 TCGAGGTTCCTTTGATTCAACG 58.936 45.455 0.00 0.00 0.00 4.10
506 743 0.107017 CCCACCTCCGCATCAAAGAT 60.107 55.000 0.00 0.00 0.00 2.40
508 745 1.002134 ACCCACCTCCGCATCAAAG 60.002 57.895 0.00 0.00 0.00 2.77
517 754 1.222567 AATATCACCCACCCACCTCC 58.777 55.000 0.00 0.00 0.00 4.30
537 774 8.880878 TCGAGCAACTAATAATTAAGTGCATA 57.119 30.769 0.00 0.00 0.00 3.14
572 809 6.714810 ACATAGACGAGATAAAGCTCAGATCT 59.285 38.462 5.00 5.00 34.56 2.75
616 863 5.168569 ACGAGAGCTTCAATCGTTAATCAA 58.831 37.500 10.28 0.00 46.76 2.57
617 864 4.744570 ACGAGAGCTTCAATCGTTAATCA 58.255 39.130 10.28 0.00 46.76 2.57
684 933 7.679638 TACTCTACAGTGTTGATGACATCATCG 60.680 40.741 18.62 8.26 43.29 3.84
690 939 6.993079 ACATTACTCTACAGTGTTGATGACA 58.007 36.000 7.88 0.00 33.62 3.58
702 951 3.506844 TGGTGCACGTACATTACTCTACA 59.493 43.478 11.45 0.00 0.00 2.74
703 952 4.100707 TGGTGCACGTACATTACTCTAC 57.899 45.455 11.45 0.00 0.00 2.59
706 955 1.659098 GCTGGTGCACGTACATTACTC 59.341 52.381 11.45 0.00 39.41 2.59
710 959 1.289109 GACGCTGGTGCACGTACATT 61.289 55.000 11.45 0.00 43.71 2.71
727 976 6.039717 AGTGGTACATTATGATTGGCAATGAC 59.960 38.462 19.07 4.61 44.52 3.06
736 985 4.654262 ACGAGGGAGTGGTACATTATGATT 59.346 41.667 0.00 0.00 44.52 2.57
737 986 4.223953 ACGAGGGAGTGGTACATTATGAT 58.776 43.478 0.00 0.00 44.52 2.45
749 998 7.464178 CGAAAACTAATATGAAACGAGGGAGTG 60.464 40.741 0.00 0.00 0.00 3.51
753 1002 5.293569 AGCGAAAACTAATATGAAACGAGGG 59.706 40.000 0.00 0.00 0.00 4.30
827 1077 2.163613 ACTCATGAATCACGCTCGTACA 59.836 45.455 0.00 0.00 0.00 2.90
914 1164 9.553064 AAGAGGCTATTTATAGATGTTCAACAG 57.447 33.333 0.00 0.00 32.05 3.16
1005 1274 2.370189 CTCCAAGGTGAAAGACTGAGGT 59.630 50.000 0.00 0.00 0.00 3.85
1041 1310 1.418097 TTGGTCTCTTGGCAGCAGGA 61.418 55.000 0.00 0.00 0.00 3.86
1054 1323 2.643304 GGAAGTAGGAAGGGTTTGGTCT 59.357 50.000 0.00 0.00 0.00 3.85
1056 1325 2.424793 TGGAAGTAGGAAGGGTTTGGT 58.575 47.619 0.00 0.00 0.00 3.67
1057 1326 3.518992 TTGGAAGTAGGAAGGGTTTGG 57.481 47.619 0.00 0.00 0.00 3.28
1146 1415 1.547675 GCATCTGGGGTTTTCTGGACA 60.548 52.381 0.00 0.00 0.00 4.02
1234 1503 1.518572 CAGGACCATCGTACACGGC 60.519 63.158 1.39 0.00 40.29 5.68
1257 1526 1.337110 GCGCGACAAGGTTTGCATTC 61.337 55.000 12.10 0.00 0.00 2.67
1278 1547 1.165907 CGAGGTGCAAACCTTGAGCA 61.166 55.000 6.31 0.00 42.63 4.26
1318 1587 2.429971 TGTTGAAGCAAATGAACCAGCA 59.570 40.909 0.00 0.00 0.00 4.41
1319 1588 3.096489 TGTTGAAGCAAATGAACCAGC 57.904 42.857 0.00 0.00 0.00 4.85
1332 1601 2.672714 TCGACGAAGACCATGTTGAAG 58.327 47.619 0.00 0.00 0.00 3.02
1369 1638 9.863845 AGAGAGATAGTTAAGCTAGACAAAAAC 57.136 33.333 0.00 0.00 32.45 2.43
1409 1678 8.632679 CAATGGCTCCAGTACAAACATTAATAT 58.367 33.333 0.00 0.00 0.00 1.28
1410 1679 7.613801 ACAATGGCTCCAGTACAAACATTAATA 59.386 33.333 0.00 0.00 0.00 0.98
1422 1695 1.563924 ACCGTACAATGGCTCCAGTA 58.436 50.000 0.00 0.00 0.00 2.74
1434 1707 5.915758 GTGTTTGAATTGCATAAACCGTACA 59.084 36.000 11.40 0.00 34.32 2.90
1466 1739 7.437862 TGACACAATTTCAAGGCAAAGTATTTC 59.562 33.333 0.00 0.00 35.03 2.17
1475 1748 5.301551 ACATAGTTGACACAATTTCAAGGCA 59.698 36.000 0.00 0.00 33.63 4.75
1476 1749 5.772521 ACATAGTTGACACAATTTCAAGGC 58.227 37.500 0.00 0.00 33.63 4.35
1477 1750 7.206981 AGACATAGTTGACACAATTTCAAGG 57.793 36.000 0.00 0.00 33.63 3.61
1486 1759 9.416284 TCCAAGTATATAGACATAGTTGACACA 57.584 33.333 10.75 0.00 41.40 3.72
1541 1814 0.486879 TGCCTTGAAAGTCCCCCATT 59.513 50.000 0.00 0.00 0.00 3.16
1571 1844 0.887247 CAACGATTGCCCATTCACCA 59.113 50.000 0.00 0.00 0.00 4.17
1619 1893 0.605319 TGTTGAAGGCGATGACACCC 60.605 55.000 0.00 0.00 0.00 4.61
1637 1911 4.750021 TCTCTCAGATTGATGGGTCTTG 57.250 45.455 0.00 0.00 0.00 3.02
1646 1920 2.354103 CCTGGCGTTTCTCTCAGATTGA 60.354 50.000 0.00 0.00 0.00 2.57
1652 1926 0.250234 CCATCCTGGCGTTTCTCTCA 59.750 55.000 0.00 0.00 0.00 3.27
1694 1968 4.044825 ACCAGAGGTCTTAAGAAGGAGAGA 59.955 45.833 6.78 0.00 0.00 3.10
1728 2002 0.183014 AGTAGCTAGGTAGGCGCAGA 59.817 55.000 10.83 0.00 34.52 4.26
1730 2004 0.183014 AGAGTAGCTAGGTAGGCGCA 59.817 55.000 10.83 0.00 34.52 6.09
1779 2053 2.567049 GTCGGACTCGGGTGTCAG 59.433 66.667 0.00 0.00 38.61 3.51
1780 2054 2.987547 GGTCGGACTCGGGTGTCA 60.988 66.667 8.23 0.00 38.61 3.58
1919 2194 7.118680 GGAAAATGCAAGTGAATCAATGACAAT 59.881 33.333 0.00 0.00 0.00 2.71
1948 2223 3.826524 TGGTTCACCAGCTTTGTCAATA 58.173 40.909 0.00 0.00 42.01 1.90
2053 2335 4.134563 GGAATTACATTACGGGTGCTCAT 58.865 43.478 0.00 0.00 0.00 2.90
2123 2405 0.546267 TCTCTGAAGGGGCAAGCTCT 60.546 55.000 0.00 0.00 0.00 4.09
2256 2538 3.620488 TGAAAGGAGTGCTCTGTGTTTT 58.380 40.909 0.00 0.00 0.00 2.43
2293 2575 6.693315 AGAAACCCACGATGTTATTATTGG 57.307 37.500 0.00 0.00 0.00 3.16
2333 2615 4.849329 CCGAGCGCCTCCACGTAC 62.849 72.222 2.29 0.00 34.88 3.67
2360 2642 1.056660 AGGTTGAGATGGGTGAACGT 58.943 50.000 0.00 0.00 0.00 3.99
2385 2667 2.038557 GTGTGACACAACACCTAGGGAT 59.961 50.000 14.81 0.00 43.84 3.85
2408 2690 8.729756 CAACATAGAAACATGGAAGACATACAA 58.270 33.333 0.00 0.00 37.84 2.41
2435 2717 5.695851 AACACACTTCTTCCTTATTGCTG 57.304 39.130 0.00 0.00 0.00 4.41
2436 2718 7.398024 AGATAACACACTTCTTCCTTATTGCT 58.602 34.615 0.00 0.00 0.00 3.91
2503 2788 5.474578 AGAGAAACTGTGTGCTGATAAGA 57.525 39.130 0.00 0.00 0.00 2.10
2533 2818 9.036671 CAAAGGTACAAACATTATTTTCCGTTT 57.963 29.630 0.00 0.00 31.96 3.60
2536 2821 6.642950 TGCAAAGGTACAAACATTATTTTCCG 59.357 34.615 0.00 0.00 0.00 4.30
2538 2823 8.810652 TCTGCAAAGGTACAAACATTATTTTC 57.189 30.769 0.00 0.00 0.00 2.29
2572 2858 9.286170 AGAGTAGAATATAGTGAGCGTGATAAA 57.714 33.333 0.00 0.00 0.00 1.40
2573 2859 8.850007 AGAGTAGAATATAGTGAGCGTGATAA 57.150 34.615 0.00 0.00 0.00 1.75
2592 2878 6.607019 AGGAACAGAGGGAGTAATAGAGTAG 58.393 44.000 0.00 0.00 0.00 2.57
2602 2888 9.453830 AGATAAATATTTAGGAACAGAGGGAGT 57.546 33.333 13.15 0.00 0.00 3.85
2630 2916 9.619316 CGTGGTAATTCATTTGAAATCTGTAAA 57.381 29.630 0.00 0.00 37.61 2.01
2631 2917 8.788806 ACGTGGTAATTCATTTGAAATCTGTAA 58.211 29.630 0.00 0.00 37.61 2.41
2632 2918 8.330466 ACGTGGTAATTCATTTGAAATCTGTA 57.670 30.769 0.00 0.00 37.61 2.74
2633 2919 7.214467 ACGTGGTAATTCATTTGAAATCTGT 57.786 32.000 0.00 0.00 37.61 3.41
2634 2920 7.425309 CGTACGTGGTAATTCATTTGAAATCTG 59.575 37.037 7.22 0.00 37.61 2.90
2635 2921 7.413657 CCGTACGTGGTAATTCATTTGAAATCT 60.414 37.037 15.21 0.00 37.61 2.40
2636 2922 6.685403 CCGTACGTGGTAATTCATTTGAAATC 59.315 38.462 15.21 0.00 37.61 2.17
2637 2923 6.372103 TCCGTACGTGGTAATTCATTTGAAAT 59.628 34.615 15.21 0.00 37.61 2.17
2638 2924 5.699915 TCCGTACGTGGTAATTCATTTGAAA 59.300 36.000 15.21 0.00 37.61 2.69
2639 2925 5.236282 TCCGTACGTGGTAATTCATTTGAA 58.764 37.500 15.21 0.00 38.56 2.69
2640 2926 4.818642 TCCGTACGTGGTAATTCATTTGA 58.181 39.130 15.21 0.00 0.00 2.69
2641 2927 5.064198 ACATCCGTACGTGGTAATTCATTTG 59.936 40.000 15.21 0.00 0.00 2.32
2642 2928 5.180271 ACATCCGTACGTGGTAATTCATTT 58.820 37.500 15.21 0.00 0.00 2.32
2643 2929 4.761975 ACATCCGTACGTGGTAATTCATT 58.238 39.130 15.21 0.00 0.00 2.57
2644 2930 4.395959 ACATCCGTACGTGGTAATTCAT 57.604 40.909 15.21 0.00 0.00 2.57
2645 2931 3.872511 ACATCCGTACGTGGTAATTCA 57.127 42.857 15.21 0.00 0.00 2.57
2646 2932 8.668353 TCTATATACATCCGTACGTGGTAATTC 58.332 37.037 15.21 0.00 0.00 2.17
2647 2933 8.454106 GTCTATATACATCCGTACGTGGTAATT 58.546 37.037 15.21 7.68 0.00 1.40
2648 2934 7.607607 TGTCTATATACATCCGTACGTGGTAAT 59.392 37.037 15.21 10.95 0.00 1.89
2649 2935 6.934083 TGTCTATATACATCCGTACGTGGTAA 59.066 38.462 15.21 5.39 0.00 2.85
2650 2936 6.463360 TGTCTATATACATCCGTACGTGGTA 58.537 40.000 15.21 13.05 0.00 3.25
2651 2937 5.308014 TGTCTATATACATCCGTACGTGGT 58.692 41.667 15.21 11.27 0.00 4.16
2652 2938 5.868043 TGTCTATATACATCCGTACGTGG 57.132 43.478 15.21 5.54 0.00 4.94
2653 2939 9.999009 AAATATGTCTATATACATCCGTACGTG 57.001 33.333 15.21 9.44 40.52 4.49
2678 2964 8.677300 GCCAAATGATTGAATCTACACTCTAAA 58.323 33.333 6.73 0.00 38.94 1.85
2679 2965 8.049117 AGCCAAATGATTGAATCTACACTCTAA 58.951 33.333 6.73 0.00 38.94 2.10
2680 2966 7.568349 AGCCAAATGATTGAATCTACACTCTA 58.432 34.615 6.73 0.00 38.94 2.43
2681 2967 6.421485 AGCCAAATGATTGAATCTACACTCT 58.579 36.000 6.73 0.00 38.94 3.24
2682 2968 6.541641 AGAGCCAAATGATTGAATCTACACTC 59.458 38.462 6.73 6.17 38.94 3.51
2683 2969 6.318144 CAGAGCCAAATGATTGAATCTACACT 59.682 38.462 6.73 0.00 38.94 3.55
2684 2970 6.493116 CAGAGCCAAATGATTGAATCTACAC 58.507 40.000 6.73 0.00 38.94 2.90
2685 2971 5.066893 GCAGAGCCAAATGATTGAATCTACA 59.933 40.000 6.73 0.00 38.94 2.74
2686 2972 5.066893 TGCAGAGCCAAATGATTGAATCTAC 59.933 40.000 6.73 0.00 38.94 2.59
2687 2973 5.195185 TGCAGAGCCAAATGATTGAATCTA 58.805 37.500 6.73 0.00 38.94 1.98
2688 2974 4.021229 TGCAGAGCCAAATGATTGAATCT 58.979 39.130 6.73 0.00 38.94 2.40
2689 2975 4.380841 TGCAGAGCCAAATGATTGAATC 57.619 40.909 0.00 0.00 38.94 2.52
2690 2976 4.161565 ACATGCAGAGCCAAATGATTGAAT 59.838 37.500 0.00 0.00 38.94 2.57
2691 2977 3.512329 ACATGCAGAGCCAAATGATTGAA 59.488 39.130 0.00 0.00 38.94 2.69
2692 2978 3.093814 ACATGCAGAGCCAAATGATTGA 58.906 40.909 0.00 0.00 38.94 2.57
2693 2979 3.520290 ACATGCAGAGCCAAATGATTG 57.480 42.857 0.00 0.00 36.25 2.67
2694 2980 4.275810 ACTACATGCAGAGCCAAATGATT 58.724 39.130 0.00 0.00 0.00 2.57
2695 2981 3.881688 GACTACATGCAGAGCCAAATGAT 59.118 43.478 0.00 0.00 0.00 2.45
2696 2982 3.273434 GACTACATGCAGAGCCAAATGA 58.727 45.455 0.00 0.00 0.00 2.57
2697 2983 3.011818 TGACTACATGCAGAGCCAAATG 58.988 45.455 0.00 0.00 0.00 2.32
2698 2984 3.012518 GTGACTACATGCAGAGCCAAAT 58.987 45.455 0.00 0.00 0.00 2.32
2699 2985 2.038952 AGTGACTACATGCAGAGCCAAA 59.961 45.455 0.00 0.00 0.00 3.28
2700 2986 1.625315 AGTGACTACATGCAGAGCCAA 59.375 47.619 0.00 0.00 0.00 4.52
2701 2987 1.269958 AGTGACTACATGCAGAGCCA 58.730 50.000 0.00 0.00 0.00 4.75
2702 2988 2.005451 CAAGTGACTACATGCAGAGCC 58.995 52.381 0.00 0.00 0.00 4.70
2703 2989 2.693069 ACAAGTGACTACATGCAGAGC 58.307 47.619 0.00 0.00 0.00 4.09
2704 2990 5.316327 TCTACAAGTGACTACATGCAGAG 57.684 43.478 0.00 0.00 27.93 3.35
2705 2991 5.722021 TTCTACAAGTGACTACATGCAGA 57.278 39.130 0.00 0.00 28.82 4.26
2706 2992 6.974932 ATTTCTACAAGTGACTACATGCAG 57.025 37.500 0.00 0.00 0.00 4.41
2707 2993 7.661437 AGAAATTTCTACAAGTGACTACATGCA 59.339 33.333 19.17 0.00 35.34 3.96
2708 2994 8.034058 AGAAATTTCTACAAGTGACTACATGC 57.966 34.615 19.17 0.00 35.34 4.06
2735 3021 9.556030 CCCTTCGTTTCTAAATATTTGTCTTTC 57.444 33.333 11.05 0.00 0.00 2.62
2736 3022 9.292195 TCCCTTCGTTTCTAAATATTTGTCTTT 57.708 29.630 11.05 0.00 0.00 2.52
2737 3023 8.857694 TCCCTTCGTTTCTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
2738 3024 8.101419 ACTCCCTTCGTTTCTAAATATTTGTCT 58.899 33.333 11.05 0.00 0.00 3.41
2739 3025 8.265165 ACTCCCTTCGTTTCTAAATATTTGTC 57.735 34.615 11.05 0.00 0.00 3.18
2740 3026 9.379791 CTACTCCCTTCGTTTCTAAATATTTGT 57.620 33.333 11.05 0.00 0.00 2.83
2741 3027 9.595823 TCTACTCCCTTCGTTTCTAAATATTTG 57.404 33.333 11.05 1.65 0.00 2.32
2752 3038 9.955102 ACTATTTATTTTCTACTCCCTTCGTTT 57.045 29.630 0.00 0.00 0.00 3.60
2753 3039 9.379791 CACTATTTATTTTCTACTCCCTTCGTT 57.620 33.333 0.00 0.00 0.00 3.85
2754 3040 8.755977 TCACTATTTATTTTCTACTCCCTTCGT 58.244 33.333 0.00 0.00 0.00 3.85
2755 3041 9.765795 ATCACTATTTATTTTCTACTCCCTTCG 57.234 33.333 0.00 0.00 0.00 3.79
2757 3043 9.343539 GCATCACTATTTATTTTCTACTCCCTT 57.656 33.333 0.00 0.00 0.00 3.95
2758 3044 8.494433 TGCATCACTATTTATTTTCTACTCCCT 58.506 33.333 0.00 0.00 0.00 4.20
2759 3045 8.677148 TGCATCACTATTTATTTTCTACTCCC 57.323 34.615 0.00 0.00 0.00 4.30
2833 3120 4.993705 TTGTGGTCCTTGGACTCTATTT 57.006 40.909 17.99 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.