Multiple sequence alignment - TraesCS4A01G495000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G495000 chr4A 100.000 4529 0 0 1 4529 742372284 742376812 0.000000e+00 8364
1 TraesCS4A01G495000 chr7A 89.404 1812 121 36 2075 3856 1850732 1848962 0.000000e+00 2217
2 TraesCS4A01G495000 chr7A 84.525 1021 56 50 928 1871 1852219 1851224 0.000000e+00 917
3 TraesCS4A01G495000 chr7A 89.549 421 22 13 3972 4391 1848725 1848326 8.690000e-142 514
4 TraesCS4A01G495000 chr7A 91.667 312 23 1 4067 4378 58140102 58139794 3.240000e-116 429
5 TraesCS4A01G495000 chr7D 86.207 1247 108 30 2738 3961 2243299 2242094 0.000000e+00 1291
6 TraesCS4A01G495000 chr7D 90.789 532 45 4 2071 2601 2243991 2243463 0.000000e+00 708
7 TraesCS4A01G495000 chr7D 89.146 562 40 9 3971 4529 2241925 2241382 0.000000e+00 680
8 TraesCS4A01G495000 chr7D 82.470 656 61 26 1307 1958 2244805 2244200 4.010000e-145 525
9 TraesCS4A01G495000 chr7D 87.031 293 19 9 1005 1281 2245093 2244804 3.400000e-81 313
10 TraesCS4A01G495000 chr6D 83.816 587 72 12 14 580 346072351 346071768 1.850000e-148 536
11 TraesCS4A01G495000 chr6D 80.921 608 81 19 1 583 387881853 387881256 8.940000e-122 448
12 TraesCS4A01G495000 chr6D 80.223 627 69 26 1 580 10714565 10715183 1.950000e-113 420
13 TraesCS4A01G495000 chr5D 81.157 605 75 27 1 578 391897983 391897391 2.480000e-122 449
14 TraesCS4A01G495000 chr5D 82.339 436 50 12 170 580 451957149 451956716 2.000000e-93 353
15 TraesCS4A01G495000 chr4D 80.813 615 82 22 1 596 339455754 339455157 2.480000e-122 449
16 TraesCS4A01G495000 chr2B 81.122 588 85 14 25 591 373294353 373293771 8.940000e-122 448
17 TraesCS4A01G495000 chr2D 81.753 559 70 18 42 580 626655974 626655428 5.380000e-119 438
18 TraesCS4A01G495000 chr2D 80.180 555 81 13 2 531 451028762 451028212 5.490000e-104 388
19 TraesCS4A01G495000 chr2D 79.447 579 80 25 19 580 308469065 308468509 1.540000e-99 374
20 TraesCS4A01G495000 chr1D 80.672 595 84 14 14 580 351505540 351506131 2.500000e-117 433
21 TraesCS4A01G495000 chr1D 79.899 597 89 16 1 578 424472975 424472391 4.220000e-110 409
22 TraesCS4A01G495000 chr1B 91.667 312 23 1 4067 4378 73711383 73711691 3.240000e-116 429
23 TraesCS4A01G495000 chr1B 91.667 312 23 1 4067 4378 119304554 119304862 3.240000e-116 429
24 TraesCS4A01G495000 chr1B 95.142 247 7 1 3832 4073 73711111 73711357 7.110000e-103 385
25 TraesCS4A01G495000 chr1B 95.142 247 7 1 3832 4073 119304282 119304528 7.110000e-103 385
26 TraesCS4A01G495000 chrUn 80.223 627 74 17 1 580 86618485 86619108 4.190000e-115 425
27 TraesCS4A01G495000 chrUn 91.346 312 24 1 4067 4378 291659550 291659242 1.510000e-114 424
28 TraesCS4A01G495000 chrUn 91.346 312 24 1 4067 4378 408262868 408262560 1.510000e-114 424
29 TraesCS4A01G495000 chrUn 95.547 247 6 1 3832 4073 291659822 291659576 1.530000e-104 390
30 TraesCS4A01G495000 chrUn 94.737 247 8 1 3832 4073 408263140 408262894 3.310000e-101 379
31 TraesCS4A01G495000 chrUn 94.737 247 8 1 3832 4073 475296774 475297020 3.310000e-101 379
32 TraesCS4A01G495000 chr4B 91.346 312 24 1 4067 4378 273362821 273363129 1.510000e-114 424
33 TraesCS4A01G495000 chr4B 95.547 247 6 4 3832 4073 166407808 166408054 1.530000e-104 390
34 TraesCS4A01G495000 chr4B 95.547 247 6 1 3832 4073 273362549 273362795 1.530000e-104 390
35 TraesCS4A01G495000 chr4B 95.142 247 7 1 3832 4073 318735721 318735475 7.110000e-103 385
36 TraesCS4A01G495000 chr4B 94.737 247 8 1 3832 4073 210653532 210653778 3.310000e-101 379
37 TraesCS4A01G495000 chr4B 79.357 591 81 29 1 571 393342600 393342031 1.190000e-100 377
38 TraesCS4A01G495000 chr3D 80.229 612 82 25 1 582 91383541 91382939 1.510000e-114 424
39 TraesCS4A01G495000 chr3D 82.315 311 35 9 285 580 340679550 340679855 7.520000e-63 252
40 TraesCS4A01G495000 chr1A 91.346 312 23 2 4067 4378 12487019 12486712 1.510000e-114 424
41 TraesCS4A01G495000 chr3B 78.324 549 100 19 56 596 12313569 12314106 2.020000e-88 337
42 TraesCS4A01G495000 chr3A 84.810 158 19 4 415 568 144327122 144327278 2.180000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G495000 chr4A 742372284 742376812 4528 False 8364.0 8364 100.0000 1 4529 1 chr4A.!!$F1 4528
1 TraesCS4A01G495000 chr7A 1848326 1852219 3893 True 1216.0 2217 87.8260 928 4391 3 chr7A.!!$R2 3463
2 TraesCS4A01G495000 chr7D 2241382 2245093 3711 True 703.4 1291 87.1286 1005 4529 5 chr7D.!!$R1 3524
3 TraesCS4A01G495000 chr6D 346071768 346072351 583 True 536.0 536 83.8160 14 580 1 chr6D.!!$R1 566
4 TraesCS4A01G495000 chr6D 387881256 387881853 597 True 448.0 448 80.9210 1 583 1 chr6D.!!$R2 582
5 TraesCS4A01G495000 chr6D 10714565 10715183 618 False 420.0 420 80.2230 1 580 1 chr6D.!!$F1 579
6 TraesCS4A01G495000 chr5D 391897391 391897983 592 True 449.0 449 81.1570 1 578 1 chr5D.!!$R1 577
7 TraesCS4A01G495000 chr4D 339455157 339455754 597 True 449.0 449 80.8130 1 596 1 chr4D.!!$R1 595
8 TraesCS4A01G495000 chr2B 373293771 373294353 582 True 448.0 448 81.1220 25 591 1 chr2B.!!$R1 566
9 TraesCS4A01G495000 chr2D 626655428 626655974 546 True 438.0 438 81.7530 42 580 1 chr2D.!!$R3 538
10 TraesCS4A01G495000 chr2D 451028212 451028762 550 True 388.0 388 80.1800 2 531 1 chr2D.!!$R2 529
11 TraesCS4A01G495000 chr2D 308468509 308469065 556 True 374.0 374 79.4470 19 580 1 chr2D.!!$R1 561
12 TraesCS4A01G495000 chr1D 351505540 351506131 591 False 433.0 433 80.6720 14 580 1 chr1D.!!$F1 566
13 TraesCS4A01G495000 chr1D 424472391 424472975 584 True 409.0 409 79.8990 1 578 1 chr1D.!!$R1 577
14 TraesCS4A01G495000 chr1B 73711111 73711691 580 False 407.0 429 93.4045 3832 4378 2 chr1B.!!$F1 546
15 TraesCS4A01G495000 chr1B 119304282 119304862 580 False 407.0 429 93.4045 3832 4378 2 chr1B.!!$F2 546
16 TraesCS4A01G495000 chrUn 86618485 86619108 623 False 425.0 425 80.2230 1 580 1 chrUn.!!$F1 579
17 TraesCS4A01G495000 chrUn 291659242 291659822 580 True 407.0 424 93.4465 3832 4378 2 chrUn.!!$R1 546
18 TraesCS4A01G495000 chrUn 408262560 408263140 580 True 401.5 424 93.0415 3832 4378 2 chrUn.!!$R2 546
19 TraesCS4A01G495000 chr4B 273362549 273363129 580 False 407.0 424 93.4465 3832 4378 2 chr4B.!!$F3 546
20 TraesCS4A01G495000 chr4B 393342031 393342600 569 True 377.0 377 79.3570 1 571 1 chr4B.!!$R2 570
21 TraesCS4A01G495000 chr3D 91382939 91383541 602 True 424.0 424 80.2290 1 582 1 chr3D.!!$R1 581
22 TraesCS4A01G495000 chr3B 12313569 12314106 537 False 337.0 337 78.3240 56 596 1 chr3B.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 982 0.034186 TCCATCCTGTCCATTGGCAC 60.034 55.0 0.0 0.0 0.0 5.01 F
1672 1836 0.603975 GCCACTCCACTCCACAGTTC 60.604 60.0 0.0 0.0 0.0 3.01 F
3459 4039 0.371645 GGCTCAAATCGCACTTCTCG 59.628 55.0 0.0 0.0 0.0 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2387 2889 0.620556 CAACCACCCATCAGCTAGGT 59.379 55.0 0.00 0.0 0.0 3.08 R
3478 4058 0.179094 GTTGTCGCCGGTCCATCATA 60.179 55.0 1.90 0.0 0.0 2.15 R
4482 5283 0.040425 AACAAATCGTGTGCGCTTCC 60.040 50.0 9.73 0.0 40.6 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 105 2.835431 CTGGATCCTCGCGGTCCT 60.835 66.667 14.23 0.00 33.92 3.85
128 132 2.285442 AACCCCTCTCCTTCCCCG 60.285 66.667 0.00 0.00 0.00 5.73
138 142 1.913762 CCTTCCCCGTCACCTGTCT 60.914 63.158 0.00 0.00 0.00 3.41
229 233 1.092921 GTATCGTGGCGGAAATGGCA 61.093 55.000 0.00 0.00 42.76 4.92
230 234 0.393132 TATCGTGGCGGAAATGGCAA 60.393 50.000 0.00 0.00 46.76 4.52
310 340 2.649034 GACAGCGGAGGAACACGA 59.351 61.111 0.00 0.00 32.99 4.35
318 348 3.591254 GAGGAACACGAGCGCCCTT 62.591 63.158 2.29 0.00 0.00 3.95
375 411 1.668101 GACTGCCGTCGAAGGAGGAT 61.668 60.000 22.33 2.52 0.00 3.24
455 539 3.157087 GGCACTTTCATGAGAAGGGAAA 58.843 45.455 18.34 0.07 35.33 3.13
482 566 1.450312 CAGCCGTGGATGAACTCCC 60.450 63.158 0.00 0.00 44.23 4.30
491 575 2.050144 GGATGAACTCCCTCATAGCCA 58.950 52.381 0.00 0.00 38.19 4.75
553 638 2.894126 AGTAGTGATGGATTAGCCGGAG 59.106 50.000 5.05 0.00 40.66 4.63
559 644 3.136443 TGATGGATTAGCCGGAGAATGTT 59.864 43.478 5.05 0.00 40.66 2.71
572 660 3.488047 GGAGAATGTTTGTGCATCGATGG 60.488 47.826 26.00 8.82 0.00 3.51
596 692 6.366332 GGTAGTTGCGTATGGATTTGAGATAG 59.634 42.308 0.00 0.00 0.00 2.08
597 693 5.918608 AGTTGCGTATGGATTTGAGATAGT 58.081 37.500 0.00 0.00 0.00 2.12
598 694 7.050970 AGTTGCGTATGGATTTGAGATAGTA 57.949 36.000 0.00 0.00 0.00 1.82
599 695 6.924060 AGTTGCGTATGGATTTGAGATAGTAC 59.076 38.462 0.00 0.00 0.00 2.73
600 696 5.458015 TGCGTATGGATTTGAGATAGTACG 58.542 41.667 0.00 0.00 37.37 3.67
601 697 5.239963 TGCGTATGGATTTGAGATAGTACGA 59.760 40.000 5.87 0.00 36.68 3.43
602 698 5.795939 GCGTATGGATTTGAGATAGTACGAG 59.204 44.000 5.87 0.00 36.68 4.18
603 699 6.348295 GCGTATGGATTTGAGATAGTACGAGA 60.348 42.308 5.87 0.00 36.68 4.04
604 700 7.237871 CGTATGGATTTGAGATAGTACGAGAG 58.762 42.308 0.00 0.00 36.68 3.20
605 701 7.117956 CGTATGGATTTGAGATAGTACGAGAGA 59.882 40.741 0.00 0.00 36.68 3.10
606 702 8.952278 GTATGGATTTGAGATAGTACGAGAGAT 58.048 37.037 0.00 0.00 0.00 2.75
607 703 7.825331 TGGATTTGAGATAGTACGAGAGATT 57.175 36.000 0.00 0.00 0.00 2.40
608 704 8.919777 TGGATTTGAGATAGTACGAGAGATTA 57.080 34.615 0.00 0.00 0.00 1.75
609 705 8.784994 TGGATTTGAGATAGTACGAGAGATTAC 58.215 37.037 0.00 0.00 0.00 1.89
610 706 9.005777 GGATTTGAGATAGTACGAGAGATTACT 57.994 37.037 0.00 0.00 33.11 2.24
612 708 7.966246 TTGAGATAGTACGAGAGATTACTCC 57.034 40.000 0.00 0.00 43.53 3.85
613 709 6.465948 TGAGATAGTACGAGAGATTACTCCC 58.534 44.000 0.00 0.00 43.53 4.30
614 710 6.270463 TGAGATAGTACGAGAGATTACTCCCT 59.730 42.308 0.00 0.00 43.53 4.20
615 711 6.704310 AGATAGTACGAGAGATTACTCCCTC 58.296 44.000 0.00 0.00 43.53 4.30
616 712 6.499350 AGATAGTACGAGAGATTACTCCCTCT 59.501 42.308 0.00 0.00 43.53 3.69
617 713 4.710324 AGTACGAGAGATTACTCCCTCTG 58.290 47.826 0.00 0.00 43.53 3.35
618 714 3.655615 ACGAGAGATTACTCCCTCTGT 57.344 47.619 0.00 0.00 43.53 3.41
619 715 4.774660 ACGAGAGATTACTCCCTCTGTA 57.225 45.455 0.00 0.00 43.53 2.74
620 716 5.113446 ACGAGAGATTACTCCCTCTGTAA 57.887 43.478 0.00 0.00 43.53 2.41
621 717 5.507637 ACGAGAGATTACTCCCTCTGTAAA 58.492 41.667 0.00 0.00 43.53 2.01
622 718 5.357596 ACGAGAGATTACTCCCTCTGTAAAC 59.642 44.000 0.00 0.00 43.53 2.01
623 719 5.591067 CGAGAGATTACTCCCTCTGTAAACT 59.409 44.000 0.00 0.00 43.53 2.66
624 720 6.766944 CGAGAGATTACTCCCTCTGTAAACTA 59.233 42.308 0.00 0.00 43.53 2.24
625 721 7.282675 CGAGAGATTACTCCCTCTGTAAACTAA 59.717 40.741 0.00 0.00 43.53 2.24
626 722 9.138596 GAGAGATTACTCCCTCTGTAAACTAAT 57.861 37.037 0.00 0.00 43.53 1.73
634 730 9.656323 ACTCCCTCTGTAAACTAATATATGTGA 57.344 33.333 0.00 0.00 0.00 3.58
671 767 9.485206 AAAAGTGTTTAGATCGCTAGTTTAAGA 57.515 29.630 0.00 0.00 0.00 2.10
672 768 8.690680 AAGTGTTTAGATCGCTAGTTTAAGAG 57.309 34.615 0.00 0.00 0.00 2.85
673 769 7.828712 AGTGTTTAGATCGCTAGTTTAAGAGT 58.171 34.615 0.00 0.00 0.00 3.24
674 770 8.954350 AGTGTTTAGATCGCTAGTTTAAGAGTA 58.046 33.333 0.00 0.00 0.00 2.59
675 771 9.008289 GTGTTTAGATCGCTAGTTTAAGAGTAC 57.992 37.037 0.00 0.00 0.00 2.73
676 772 8.733458 TGTTTAGATCGCTAGTTTAAGAGTACA 58.267 33.333 0.00 0.00 0.00 2.90
677 773 9.733219 GTTTAGATCGCTAGTTTAAGAGTACAT 57.267 33.333 0.00 0.00 0.00 2.29
681 777 9.122779 AGATCGCTAGTTTAAGAGTACATTACT 57.877 33.333 0.00 0.00 42.86 2.24
682 778 9.733219 GATCGCTAGTTTAAGAGTACATTACTT 57.267 33.333 0.00 0.00 39.59 2.24
689 785 9.109246 AGTTTAAGAGTACATTACTTAAGGGGT 57.891 33.333 7.53 2.00 39.59 4.95
690 786 9.159364 GTTTAAGAGTACATTACTTAAGGGGTG 57.841 37.037 7.53 4.73 39.59 4.61
691 787 5.354842 AGAGTACATTACTTAAGGGGTGC 57.645 43.478 7.53 3.19 39.59 5.01
692 788 4.163649 AGAGTACATTACTTAAGGGGTGCC 59.836 45.833 7.53 0.00 39.59 5.01
693 789 2.820728 ACATTACTTAAGGGGTGCCC 57.179 50.000 7.53 0.00 45.90 5.36
694 790 6.201723 AGTACATTACTTAAGGGGTGCCCG 62.202 50.000 7.53 0.00 42.12 6.13
702 798 4.360405 GGGGTGCCCGGTCAATGT 62.360 66.667 0.00 0.00 36.85 2.71
703 799 2.750237 GGGTGCCCGGTCAATGTC 60.750 66.667 0.00 0.00 0.00 3.06
704 800 2.750237 GGTGCCCGGTCAATGTCC 60.750 66.667 0.00 0.00 0.00 4.02
705 801 3.124921 GTGCCCGGTCAATGTCCG 61.125 66.667 11.80 11.80 46.49 4.79
710 806 4.752879 CGGTCAATGTCCGCGGGT 62.753 66.667 27.83 9.24 41.48 5.28
711 807 3.124921 GGTCAATGTCCGCGGGTG 61.125 66.667 27.83 18.00 0.00 4.61
712 808 2.358247 GTCAATGTCCGCGGGTGT 60.358 61.111 27.83 8.41 0.00 4.16
713 809 1.964373 GTCAATGTCCGCGGGTGTT 60.964 57.895 27.83 14.45 0.00 3.32
714 810 1.963855 TCAATGTCCGCGGGTGTTG 60.964 57.895 27.83 24.55 0.00 3.33
715 811 2.671619 AATGTCCGCGGGTGTTGG 60.672 61.111 27.83 0.00 0.00 3.77
716 812 3.185299 AATGTCCGCGGGTGTTGGA 62.185 57.895 27.83 0.00 0.00 3.53
717 813 3.605749 ATGTCCGCGGGTGTTGGAG 62.606 63.158 27.83 0.00 31.04 3.86
725 821 3.728373 GGTGTTGGAGGGCCGGAT 61.728 66.667 5.05 0.00 36.79 4.18
726 822 2.355115 GTGTTGGAGGGCCGGATT 59.645 61.111 5.05 0.00 36.79 3.01
727 823 1.304134 GTGTTGGAGGGCCGGATTT 60.304 57.895 5.05 0.00 36.79 2.17
728 824 0.034863 GTGTTGGAGGGCCGGATTTA 60.035 55.000 5.05 0.00 36.79 1.40
729 825 0.034863 TGTTGGAGGGCCGGATTTAC 60.035 55.000 5.05 0.00 36.79 2.01
730 826 0.750546 GTTGGAGGGCCGGATTTACC 60.751 60.000 5.05 1.43 36.79 2.85
731 827 1.208844 TTGGAGGGCCGGATTTACCA 61.209 55.000 5.05 4.51 38.90 3.25
732 828 1.208844 TGGAGGGCCGGATTTACCAA 61.209 55.000 5.05 0.00 38.90 3.67
733 829 0.465642 GGAGGGCCGGATTTACCAAG 60.466 60.000 5.05 0.00 38.90 3.61
734 830 0.255033 GAGGGCCGGATTTACCAAGT 59.745 55.000 5.05 0.00 38.90 3.16
735 831 0.255033 AGGGCCGGATTTACCAAGTC 59.745 55.000 5.05 0.00 38.90 3.01
736 832 1.093496 GGGCCGGATTTACCAAGTCG 61.093 60.000 5.05 0.00 38.90 4.18
737 833 0.392060 GGCCGGATTTACCAAGTCGT 60.392 55.000 5.05 0.00 38.90 4.34
738 834 0.725117 GCCGGATTTACCAAGTCGTG 59.275 55.000 5.05 0.00 38.90 4.35
739 835 1.942586 GCCGGATTTACCAAGTCGTGT 60.943 52.381 5.05 0.00 38.90 4.49
740 836 1.730064 CCGGATTTACCAAGTCGTGTG 59.270 52.381 0.00 0.00 38.90 3.82
741 837 2.409975 CGGATTTACCAAGTCGTGTGT 58.590 47.619 0.00 0.00 38.90 3.72
742 838 3.577667 CGGATTTACCAAGTCGTGTGTA 58.422 45.455 0.00 0.00 38.90 2.90
743 839 3.989167 CGGATTTACCAAGTCGTGTGTAA 59.011 43.478 0.00 0.00 38.90 2.41
744 840 4.628333 CGGATTTACCAAGTCGTGTGTAAT 59.372 41.667 0.00 0.00 38.90 1.89
745 841 5.806502 CGGATTTACCAAGTCGTGTGTAATA 59.193 40.000 0.00 0.00 38.90 0.98
746 842 6.310956 CGGATTTACCAAGTCGTGTGTAATAA 59.689 38.462 0.00 0.00 38.90 1.40
747 843 7.010738 CGGATTTACCAAGTCGTGTGTAATAAT 59.989 37.037 0.00 0.00 38.90 1.28
748 844 9.316730 GGATTTACCAAGTCGTGTGTAATAATA 57.683 33.333 0.00 0.00 38.79 0.98
752 848 7.068692 ACCAAGTCGTGTGTAATAATAAAGC 57.931 36.000 0.00 0.00 0.00 3.51
753 849 6.651643 ACCAAGTCGTGTGTAATAATAAAGCA 59.348 34.615 0.00 0.00 0.00 3.91
754 850 7.335924 ACCAAGTCGTGTGTAATAATAAAGCAT 59.664 33.333 0.00 0.00 0.00 3.79
755 851 8.181573 CCAAGTCGTGTGTAATAATAAAGCATT 58.818 33.333 0.00 0.00 0.00 3.56
756 852 9.554724 CAAGTCGTGTGTAATAATAAAGCATTT 57.445 29.630 0.00 0.00 43.42 2.32
758 854 9.554724 AGTCGTGTGTAATAATAAAGCATTTTG 57.445 29.630 0.00 0.00 40.09 2.44
759 855 8.794406 GTCGTGTGTAATAATAAAGCATTTTGG 58.206 33.333 0.00 0.00 40.09 3.28
760 856 7.971168 TCGTGTGTAATAATAAAGCATTTTGGG 59.029 33.333 0.00 0.00 40.09 4.12
761 857 7.971168 CGTGTGTAATAATAAAGCATTTTGGGA 59.029 33.333 0.00 0.00 40.09 4.37
762 858 9.816354 GTGTGTAATAATAAAGCATTTTGGGAT 57.184 29.630 0.00 0.00 40.09 3.85
763 859 9.814899 TGTGTAATAATAAAGCATTTTGGGATG 57.185 29.630 0.00 0.00 40.09 3.51
768 864 9.991906 AATAATAAAGCATTTTGGGATGAGATG 57.008 29.630 0.00 0.00 40.09 2.90
769 865 4.748277 AAAGCATTTTGGGATGAGATGG 57.252 40.909 0.00 0.00 31.62 3.51
770 866 2.674420 AGCATTTTGGGATGAGATGGG 58.326 47.619 0.00 0.00 0.00 4.00
771 867 2.245546 AGCATTTTGGGATGAGATGGGA 59.754 45.455 0.00 0.00 0.00 4.37
772 868 2.626743 GCATTTTGGGATGAGATGGGAG 59.373 50.000 0.00 0.00 0.00 4.30
773 869 3.228453 CATTTTGGGATGAGATGGGAGG 58.772 50.000 0.00 0.00 0.00 4.30
774 870 0.552848 TTTGGGATGAGATGGGAGGC 59.447 55.000 0.00 0.00 0.00 4.70
775 871 0.327867 TTGGGATGAGATGGGAGGCT 60.328 55.000 0.00 0.00 0.00 4.58
776 872 0.567687 TGGGATGAGATGGGAGGCTA 59.432 55.000 0.00 0.00 0.00 3.93
777 873 0.980423 GGGATGAGATGGGAGGCTAC 59.020 60.000 0.00 0.00 0.00 3.58
778 874 0.605589 GGATGAGATGGGAGGCTACG 59.394 60.000 0.00 0.00 0.00 3.51
779 875 0.605589 GATGAGATGGGAGGCTACGG 59.394 60.000 0.00 0.00 0.00 4.02
780 876 1.476007 ATGAGATGGGAGGCTACGGC 61.476 60.000 0.00 0.00 37.82 5.68
781 877 3.214250 GAGATGGGAGGCTACGGCG 62.214 68.421 4.80 4.80 39.81 6.46
782 878 4.971125 GATGGGAGGCTACGGCGC 62.971 72.222 6.90 0.00 39.81 6.53
809 905 2.657237 GGCAGCACCGTGAGTAGT 59.343 61.111 1.65 0.00 0.00 2.73
810 906 1.888018 GGCAGCACCGTGAGTAGTA 59.112 57.895 1.65 0.00 0.00 1.82
811 907 0.179134 GGCAGCACCGTGAGTAGTAG 60.179 60.000 1.65 0.00 0.00 2.57
812 908 0.526662 GCAGCACCGTGAGTAGTAGT 59.473 55.000 1.65 0.00 0.00 2.73
813 909 1.732732 GCAGCACCGTGAGTAGTAGTG 60.733 57.143 1.65 0.00 0.00 2.74
814 910 3.031660 GCACCGTGAGTAGTAGTGC 57.968 57.895 1.65 0.00 45.99 4.40
817 913 2.596452 CACCGTGAGTAGTAGTGCTTG 58.404 52.381 0.00 0.00 0.00 4.01
818 914 1.544691 ACCGTGAGTAGTAGTGCTTGG 59.455 52.381 0.00 0.00 0.00 3.61
819 915 1.630148 CGTGAGTAGTAGTGCTTGGC 58.370 55.000 0.00 0.00 0.00 4.52
820 916 1.202582 CGTGAGTAGTAGTGCTTGGCT 59.797 52.381 0.00 0.00 0.00 4.75
821 917 2.611518 GTGAGTAGTAGTGCTTGGCTG 58.388 52.381 0.00 0.00 0.00 4.85
822 918 1.066858 TGAGTAGTAGTGCTTGGCTGC 60.067 52.381 0.00 0.00 0.00 5.25
823 919 1.205893 GAGTAGTAGTGCTTGGCTGCT 59.794 52.381 0.00 0.00 33.63 4.24
824 920 1.625818 AGTAGTAGTGCTTGGCTGCTT 59.374 47.619 0.00 0.00 31.60 3.91
825 921 1.734465 GTAGTAGTGCTTGGCTGCTTG 59.266 52.381 0.00 0.00 31.60 4.01
826 922 1.211190 GTAGTGCTTGGCTGCTTGC 59.789 57.895 0.00 2.41 41.94 4.01
827 923 1.073722 TAGTGCTTGGCTGCTTGCT 59.926 52.632 0.00 3.72 42.39 3.91
828 924 0.324614 TAGTGCTTGGCTGCTTGCTA 59.675 50.000 0.00 0.00 42.39 3.49
829 925 0.323178 AGTGCTTGGCTGCTTGCTAT 60.323 50.000 0.00 0.00 42.39 2.97
830 926 0.529378 GTGCTTGGCTGCTTGCTATT 59.471 50.000 0.00 0.00 42.39 1.73
831 927 0.528924 TGCTTGGCTGCTTGCTATTG 59.471 50.000 0.00 0.00 42.39 1.90
832 928 0.179119 GCTTGGCTGCTTGCTATTGG 60.179 55.000 0.00 0.00 42.39 3.16
833 929 0.458669 CTTGGCTGCTTGCTATTGGG 59.541 55.000 0.00 0.00 42.39 4.12
834 930 0.039472 TTGGCTGCTTGCTATTGGGA 59.961 50.000 0.00 0.00 42.39 4.37
835 931 0.259647 TGGCTGCTTGCTATTGGGAT 59.740 50.000 0.00 0.00 42.39 3.85
836 932 1.342275 TGGCTGCTTGCTATTGGGATT 60.342 47.619 0.00 0.00 42.39 3.01
837 933 1.758862 GGCTGCTTGCTATTGGGATTT 59.241 47.619 0.00 0.00 42.39 2.17
838 934 2.482490 GGCTGCTTGCTATTGGGATTTG 60.482 50.000 0.00 0.00 42.39 2.32
839 935 2.482490 GCTGCTTGCTATTGGGATTTGG 60.482 50.000 0.00 0.00 38.95 3.28
840 936 2.101917 CTGCTTGCTATTGGGATTTGGG 59.898 50.000 0.00 0.00 0.00 4.12
841 937 2.292126 TGCTTGCTATTGGGATTTGGGA 60.292 45.455 0.00 0.00 0.00 4.37
842 938 2.363359 GCTTGCTATTGGGATTTGGGAG 59.637 50.000 0.00 0.00 0.00 4.30
843 939 3.902218 CTTGCTATTGGGATTTGGGAGA 58.098 45.455 0.00 0.00 0.00 3.71
844 940 3.582998 TGCTATTGGGATTTGGGAGAG 57.417 47.619 0.00 0.00 0.00 3.20
845 941 3.122480 TGCTATTGGGATTTGGGAGAGA 58.878 45.455 0.00 0.00 0.00 3.10
846 942 3.137176 TGCTATTGGGATTTGGGAGAGAG 59.863 47.826 0.00 0.00 0.00 3.20
847 943 3.137360 GCTATTGGGATTTGGGAGAGAGT 59.863 47.826 0.00 0.00 0.00 3.24
848 944 4.385754 GCTATTGGGATTTGGGAGAGAGTT 60.386 45.833 0.00 0.00 0.00 3.01
849 945 4.682021 ATTGGGATTTGGGAGAGAGTTT 57.318 40.909 0.00 0.00 0.00 2.66
850 946 4.469469 TTGGGATTTGGGAGAGAGTTTT 57.531 40.909 0.00 0.00 0.00 2.43
851 947 4.034285 TGGGATTTGGGAGAGAGTTTTC 57.966 45.455 0.00 0.00 0.00 2.29
852 948 3.397618 TGGGATTTGGGAGAGAGTTTTCA 59.602 43.478 0.00 0.00 0.00 2.69
853 949 4.141041 TGGGATTTGGGAGAGAGTTTTCAA 60.141 41.667 0.00 0.00 0.00 2.69
854 950 4.218635 GGGATTTGGGAGAGAGTTTTCAAC 59.781 45.833 0.00 0.00 0.00 3.18
855 951 5.073428 GGATTTGGGAGAGAGTTTTCAACT 58.927 41.667 0.00 0.00 46.38 3.16
866 962 4.622701 AGTTTTCAACTCAGACACTTGC 57.377 40.909 0.00 0.00 37.02 4.01
867 963 4.265073 AGTTTTCAACTCAGACACTTGCT 58.735 39.130 0.00 0.00 37.02 3.91
868 964 4.333926 AGTTTTCAACTCAGACACTTGCTC 59.666 41.667 0.00 0.00 37.02 4.26
869 965 2.533266 TCAACTCAGACACTTGCTCC 57.467 50.000 0.00 0.00 0.00 4.70
870 966 1.762370 TCAACTCAGACACTTGCTCCA 59.238 47.619 0.00 0.00 0.00 3.86
871 967 2.369860 TCAACTCAGACACTTGCTCCAT 59.630 45.455 0.00 0.00 0.00 3.41
872 968 2.740981 CAACTCAGACACTTGCTCCATC 59.259 50.000 0.00 0.00 0.00 3.51
873 969 1.277557 ACTCAGACACTTGCTCCATCC 59.722 52.381 0.00 0.00 0.00 3.51
874 970 1.554160 CTCAGACACTTGCTCCATCCT 59.446 52.381 0.00 0.00 0.00 3.24
875 971 1.277273 TCAGACACTTGCTCCATCCTG 59.723 52.381 0.00 0.00 0.00 3.86
876 972 1.002888 CAGACACTTGCTCCATCCTGT 59.997 52.381 0.00 0.00 0.00 4.00
877 973 1.277557 AGACACTTGCTCCATCCTGTC 59.722 52.381 0.00 0.00 0.00 3.51
878 974 0.326264 ACACTTGCTCCATCCTGTCC 59.674 55.000 0.00 0.00 0.00 4.02
879 975 0.325933 CACTTGCTCCATCCTGTCCA 59.674 55.000 0.00 0.00 0.00 4.02
880 976 1.064906 CACTTGCTCCATCCTGTCCAT 60.065 52.381 0.00 0.00 0.00 3.41
881 977 1.637553 ACTTGCTCCATCCTGTCCATT 59.362 47.619 0.00 0.00 0.00 3.16
882 978 2.022195 CTTGCTCCATCCTGTCCATTG 58.978 52.381 0.00 0.00 0.00 2.82
883 979 0.256752 TGCTCCATCCTGTCCATTGG 59.743 55.000 0.00 0.00 0.00 3.16
884 980 1.105759 GCTCCATCCTGTCCATTGGC 61.106 60.000 0.00 0.00 0.00 4.52
885 981 0.256752 CTCCATCCTGTCCATTGGCA 59.743 55.000 0.00 0.00 0.00 4.92
886 982 0.034186 TCCATCCTGTCCATTGGCAC 60.034 55.000 0.00 0.00 0.00 5.01
887 983 1.378882 CCATCCTGTCCATTGGCACG 61.379 60.000 0.00 0.00 0.00 5.34
888 984 1.077501 ATCCTGTCCATTGGCACGG 60.078 57.895 0.00 2.82 0.00 4.94
889 985 3.443045 CCTGTCCATTGGCACGGC 61.443 66.667 0.00 0.00 0.00 5.68
890 986 2.672651 CTGTCCATTGGCACGGCA 60.673 61.111 0.00 0.00 0.00 5.69
891 987 2.981560 CTGTCCATTGGCACGGCAC 61.982 63.158 0.00 0.00 0.00 5.01
918 1014 4.704833 CGGCCACCACCACCAGAG 62.705 72.222 2.24 0.00 0.00 3.35
919 1015 3.249189 GGCCACCACCACCAGAGA 61.249 66.667 0.00 0.00 0.00 3.10
920 1016 2.348998 GCCACCACCACCAGAGAG 59.651 66.667 0.00 0.00 0.00 3.20
921 1017 2.217038 GCCACCACCACCAGAGAGA 61.217 63.158 0.00 0.00 0.00 3.10
922 1018 1.978473 CCACCACCACCAGAGAGAG 59.022 63.158 0.00 0.00 0.00 3.20
923 1019 1.548357 CCACCACCACCAGAGAGAGG 61.548 65.000 0.00 0.00 0.00 3.69
924 1020 1.915769 ACCACCACCAGAGAGAGGC 60.916 63.158 0.00 0.00 0.00 4.70
925 1021 1.611851 CCACCACCAGAGAGAGGCT 60.612 63.158 0.00 0.00 0.00 4.58
926 1022 1.612395 CCACCACCAGAGAGAGGCTC 61.612 65.000 6.34 6.34 44.29 4.70
965 1061 3.602513 CTGCTTGCCACTCGCTCCT 62.603 63.158 0.00 0.00 38.78 3.69
966 1062 2.817396 GCTTGCCACTCGCTCCTC 60.817 66.667 0.00 0.00 38.78 3.71
967 1063 2.507992 CTTGCCACTCGCTCCTCG 60.508 66.667 0.00 0.00 38.78 4.63
968 1064 4.742201 TTGCCACTCGCTCCTCGC 62.742 66.667 0.00 0.00 38.78 5.03
978 1074 4.180946 CTCCTCGCCGGACACTCG 62.181 72.222 5.05 0.00 36.69 4.18
981 1077 4.421479 CTCGCCGGACACTCGCTT 62.421 66.667 5.05 0.00 0.00 4.68
986 1082 3.414700 CGGACACTCGCTTGCCAC 61.415 66.667 0.00 0.00 0.00 5.01
988 1084 2.280797 GACACTCGCTTGCCACCA 60.281 61.111 0.00 0.00 0.00 4.17
989 1085 2.591715 ACACTCGCTTGCCACCAC 60.592 61.111 0.00 0.00 0.00 4.16
998 1106 1.789078 CTTGCCACCACAGCAGACAC 61.789 60.000 0.00 0.00 42.17 3.67
1212 1326 4.728102 CGCCACCGCAACCTACGA 62.728 66.667 0.00 0.00 34.03 3.43
1223 1337 2.162408 GCAACCTACGAACGTACCTACT 59.838 50.000 2.89 0.00 0.00 2.57
1224 1338 3.374058 GCAACCTACGAACGTACCTACTA 59.626 47.826 2.89 0.00 0.00 1.82
1225 1339 4.728021 GCAACCTACGAACGTACCTACTAC 60.728 50.000 2.89 0.00 0.00 2.73
1226 1340 4.473477 ACCTACGAACGTACCTACTACT 57.527 45.455 2.89 0.00 0.00 2.57
1227 1341 4.184629 ACCTACGAACGTACCTACTACTG 58.815 47.826 2.89 0.00 0.00 2.74
1228 1342 3.001736 CCTACGAACGTACCTACTACTGC 59.998 52.174 2.89 0.00 0.00 4.40
1246 1360 3.139211 ACTGCCTTCTTCCTCCTTTCTTT 59.861 43.478 0.00 0.00 0.00 2.52
1255 1387 4.357918 TCCTCCTTTCTTTCTTCCAGTG 57.642 45.455 0.00 0.00 0.00 3.66
1284 1429 5.248640 TGAATCAAGATCCGCTCTTTCTTT 58.751 37.500 0.00 0.00 41.60 2.52
1285 1430 5.352569 TGAATCAAGATCCGCTCTTTCTTTC 59.647 40.000 0.00 2.38 41.60 2.62
1286 1431 4.543590 TCAAGATCCGCTCTTTCTTTCT 57.456 40.909 0.00 0.00 41.60 2.52
1287 1432 4.899502 TCAAGATCCGCTCTTTCTTTCTT 58.100 39.130 0.00 0.00 41.60 2.52
1288 1433 5.308825 TCAAGATCCGCTCTTTCTTTCTTT 58.691 37.500 0.00 0.00 41.60 2.52
1289 1434 5.409826 TCAAGATCCGCTCTTTCTTTCTTTC 59.590 40.000 0.00 0.00 41.60 2.62
1290 1435 5.159273 AGATCCGCTCTTTCTTTCTTTCT 57.841 39.130 0.00 0.00 0.00 2.52
1291 1436 5.555966 AGATCCGCTCTTTCTTTCTTTCTT 58.444 37.500 0.00 0.00 0.00 2.52
1292 1437 6.000840 AGATCCGCTCTTTCTTTCTTTCTTT 58.999 36.000 0.00 0.00 0.00 2.52
1305 1450 8.220755 TCTTTCTTTCTTTCTTTCCGATTTGA 57.779 30.769 0.00 0.00 0.00 2.69
1308 1453 9.816354 TTTCTTTCTTTCTTTCCGATTTGATTT 57.184 25.926 0.00 0.00 0.00 2.17
1309 1454 8.801715 TCTTTCTTTCTTTCCGATTTGATTTG 57.198 30.769 0.00 0.00 0.00 2.32
1495 1640 4.116328 CGCCGGAGCTCGACTTCA 62.116 66.667 5.05 0.00 42.43 3.02
1566 1711 2.205074 GGATTCGCAGTCCACATGTAG 58.795 52.381 0.00 0.00 35.76 2.74
1567 1712 2.159099 GGATTCGCAGTCCACATGTAGA 60.159 50.000 0.00 0.00 35.76 2.59
1568 1713 2.654749 TTCGCAGTCCACATGTAGAG 57.345 50.000 0.00 0.00 0.00 2.43
1569 1714 1.545841 TCGCAGTCCACATGTAGAGT 58.454 50.000 0.00 0.00 0.00 3.24
1570 1715 2.718563 TCGCAGTCCACATGTAGAGTA 58.281 47.619 0.00 0.00 0.00 2.59
1571 1716 2.422479 TCGCAGTCCACATGTAGAGTAC 59.578 50.000 0.00 0.00 0.00 2.73
1573 1718 2.761208 GCAGTCCACATGTAGAGTACCT 59.239 50.000 0.00 0.00 0.00 3.08
1608 1762 7.411486 TCTGCTTCTTTCTACTGTAGCTTAT 57.589 36.000 9.98 0.00 0.00 1.73
1649 1808 3.692257 ACCATCCTTCAGACTGTTCAG 57.308 47.619 1.59 0.00 0.00 3.02
1653 1812 1.270826 TCCTTCAGACTGTTCAGCTCG 59.729 52.381 1.59 0.00 0.00 5.03
1672 1836 0.603975 GCCACTCCACTCCACAGTTC 60.604 60.000 0.00 0.00 0.00 3.01
1674 1838 1.349026 CCACTCCACTCCACAGTTCAT 59.651 52.381 0.00 0.00 0.00 2.57
1678 1842 3.244353 ACTCCACTCCACAGTTCATTCTG 60.244 47.826 0.00 0.00 40.80 3.02
1683 1847 4.024556 CACTCCACAGTTCATTCTGTTCAC 60.025 45.833 0.00 0.00 44.92 3.18
1687 1851 2.880890 ACAGTTCATTCTGTTCACCAGC 59.119 45.455 0.00 0.00 44.92 4.85
1690 1854 2.084610 TCATTCTGTTCACCAGCTCG 57.915 50.000 0.00 0.00 41.25 5.03
1711 1875 6.587608 GCTCGAAATTTCAGACCAAAATTGAT 59.412 34.615 17.99 0.00 36.65 2.57
1724 1888 4.632688 CCAAAATTGATTGGCTGATTGACC 59.367 41.667 0.00 0.00 43.11 4.02
1728 1892 1.355381 TGATTGGCTGATTGACCCTGT 59.645 47.619 0.00 0.00 0.00 4.00
1730 1894 3.010027 TGATTGGCTGATTGACCCTGTTA 59.990 43.478 0.00 0.00 0.00 2.41
1744 1921 1.679680 CCTGTTAATGCTCATGCCCTG 59.320 52.381 0.00 0.00 38.71 4.45
1823 2000 1.519455 CGACTTCCTCATCGTGCCC 60.519 63.158 0.00 0.00 33.63 5.36
1845 2022 1.359474 AGCAAGGGAGTGAGTCCTCTA 59.641 52.381 6.24 0.00 46.06 2.43
1878 2064 4.406069 CACCAAATTCAGACATAACGCTG 58.594 43.478 0.00 0.00 0.00 5.18
1889 2075 5.688348 GACATAACGCTGTCTTTGTCTAG 57.312 43.478 6.22 0.00 41.87 2.43
1896 2082 3.614150 CGCTGTCTTTGTCTAGCTACCAA 60.614 47.826 0.00 0.00 34.13 3.67
1899 2085 3.901844 TGTCTTTGTCTAGCTACCAACCT 59.098 43.478 0.00 0.00 0.00 3.50
1900 2086 4.246458 GTCTTTGTCTAGCTACCAACCTG 58.754 47.826 0.00 0.00 0.00 4.00
1901 2087 3.901844 TCTTTGTCTAGCTACCAACCTGT 59.098 43.478 0.00 0.00 0.00 4.00
1917 2103 2.880890 ACCTGTTGTTGCTCTGTTCATC 59.119 45.455 0.00 0.00 0.00 2.92
1931 2117 5.005740 TCTGTTCATCCTTGATTGGAACTG 58.994 41.667 0.00 0.00 39.85 3.16
1937 2123 4.277515 TCCTTGATTGGAACTGTCTCAG 57.722 45.455 0.00 0.00 37.52 3.35
1948 2374 4.141846 GGAACTGTCTCAGATATTCAGCCA 60.142 45.833 3.70 0.00 35.18 4.75
1967 2393 4.645588 AGCCACACTACCACTAGAGTTATC 59.354 45.833 0.00 0.00 0.00 1.75
1974 2400 7.067615 ACACTACCACTAGAGTTATCATCACAG 59.932 40.741 0.00 0.00 0.00 3.66
1978 2404 6.070538 ACCACTAGAGTTATCATCACAGCTTT 60.071 38.462 0.00 0.00 0.00 3.51
2018 2462 1.239347 GTCCTTTTCAGTGTCCCAGC 58.761 55.000 0.00 0.00 0.00 4.85
2036 2480 1.001974 AGCCTTCTGTCGTTATGTGCA 59.998 47.619 0.00 0.00 0.00 4.57
2043 2487 5.878332 TCTGTCGTTATGTGCAATTGATT 57.122 34.783 10.34 0.00 0.00 2.57
2108 2610 3.953612 TGCTTACATTGATGGGAATGTCC 59.046 43.478 0.00 0.00 43.88 4.02
2124 2626 2.837947 TGTCCATCCTCATCACCTTCT 58.162 47.619 0.00 0.00 0.00 2.85
2211 2713 3.165559 CGAGATCGTCGTCATTCCC 57.834 57.895 6.45 0.00 44.20 3.97
2333 2835 4.595762 TTGGTAATATACTCGTGCCTCC 57.404 45.455 0.00 0.00 0.00 4.30
2351 2853 3.243569 CCTCCGCCTTCTGTATTCTACTG 60.244 52.174 0.00 0.00 0.00 2.74
2352 2854 2.100916 TCCGCCTTCTGTATTCTACTGC 59.899 50.000 0.00 0.00 0.00 4.40
2363 2865 7.615403 TCTGTATTCTACTGCAAGACTGAATT 58.385 34.615 0.00 0.00 37.43 2.17
2369 2871 2.895404 ACTGCAAGACTGAATTGGCATT 59.105 40.909 0.00 0.00 37.43 3.56
2392 2894 6.710597 TCTGTGCTGTTATAAGGTACCTAG 57.289 41.667 16.67 8.88 0.00 3.02
2393 2895 5.068723 TCTGTGCTGTTATAAGGTACCTAGC 59.931 44.000 20.65 20.65 0.00 3.42
2394 2896 4.960469 TGTGCTGTTATAAGGTACCTAGCT 59.040 41.667 25.29 10.97 35.17 3.32
2395 2897 5.163447 TGTGCTGTTATAAGGTACCTAGCTG 60.163 44.000 25.29 13.90 33.75 4.24
2399 2901 6.665992 TGTTATAAGGTACCTAGCTGATGG 57.334 41.667 16.67 0.00 33.75 3.51
2425 2928 1.508088 GTGTGCAGGTGCTAATGGC 59.492 57.895 3.18 0.00 42.66 4.40
2437 2940 1.001517 TAATGGCTTGGCTTCGGCA 60.002 52.632 0.00 0.00 43.96 5.69
2476 2979 2.334946 GGCATGGTTCGAGCAAGCA 61.335 57.895 13.33 3.80 46.44 3.91
2515 3018 2.691409 TAGTGCAGAAGTATGGTGGC 57.309 50.000 0.00 0.00 0.00 5.01
2599 3102 7.748691 TTATGTCCCTTACAAGGTAACAAAC 57.251 36.000 14.07 2.58 44.98 2.93
2655 3158 7.696755 TCGAGTCCCTTTTTAACTGTTAAAAC 58.303 34.615 28.59 20.60 42.82 2.43
2663 3166 9.131416 CCTTTTTAACTGTTAAAACGTGTCTTT 57.869 29.630 28.59 0.00 42.82 2.52
2734 3237 5.394553 GGAATGATTTTCTTTGGCCCTACAG 60.395 44.000 0.00 0.00 0.00 2.74
2743 3246 3.127533 GCCCTACAGCTTGCCGTG 61.128 66.667 0.00 0.00 0.00 4.94
2758 3261 1.588674 CCGTGTGTGCCTAACTTGAA 58.411 50.000 0.00 0.00 0.00 2.69
2817 3377 3.624410 GTCCGTTTAACACTGTCCTGTTT 59.376 43.478 0.00 0.00 35.87 2.83
2870 3430 4.175516 GACTGCTTCTTCTGACTGAGATG 58.824 47.826 0.00 0.00 0.00 2.90
2874 3434 6.154192 ACTGCTTCTTCTGACTGAGATGATAA 59.846 38.462 0.00 0.00 35.39 1.75
2876 3436 8.242729 TGCTTCTTCTGACTGAGATGATAATA 57.757 34.615 0.00 0.00 35.39 0.98
2882 3442 9.247126 CTTCTGACTGAGATGATAATACAGTTG 57.753 37.037 0.00 0.00 41.01 3.16
2883 3443 7.720442 TCTGACTGAGATGATAATACAGTTGG 58.280 38.462 0.00 0.00 41.01 3.77
2927 3493 5.867174 TCTTGTGTTATGTGTCTGATAACCG 59.133 40.000 0.00 0.00 36.03 4.44
2928 3494 5.142061 TGTGTTATGTGTCTGATAACCGT 57.858 39.130 0.00 0.00 36.03 4.83
2929 3495 4.926832 TGTGTTATGTGTCTGATAACCGTG 59.073 41.667 0.00 0.00 36.03 4.94
3101 3668 2.301296 CGAGTTCATGGGGCTGATCTAT 59.699 50.000 0.00 0.00 0.00 1.98
3123 3690 8.400947 TCTATGGCGTATACGAGGTAATAAATC 58.599 37.037 28.66 6.05 43.02 2.17
3129 3696 8.663911 GCGTATACGAGGTAATAAATCTCTAGT 58.336 37.037 28.66 0.00 43.02 2.57
3152 3719 5.575995 GTCTCGGTATAAACTGAACTGAACC 59.424 44.000 0.00 0.00 40.52 3.62
3153 3720 4.824289 TCGGTATAAACTGAACTGAACCC 58.176 43.478 0.00 0.00 38.08 4.11
3171 3738 4.569719 ACCCGTTATCTGTTTCCTGAAT 57.430 40.909 0.00 0.00 0.00 2.57
3172 3739 4.261801 ACCCGTTATCTGTTTCCTGAATG 58.738 43.478 0.00 0.00 0.00 2.67
3183 3760 2.775911 TCCTGAATGCCTGAACTGAG 57.224 50.000 0.00 0.00 0.00 3.35
3207 3787 0.459934 GCAACACACAGGCAAAAGCA 60.460 50.000 0.00 0.00 0.00 3.91
3300 3880 2.467826 GGCGACCATCAGCAAGCTC 61.468 63.158 0.00 0.00 34.54 4.09
3306 3886 4.845580 ATCAGCAAGCTCGGCGGG 62.846 66.667 7.21 3.91 36.08 6.13
3357 3937 1.959085 CACGCTGGCCTTCATGTTT 59.041 52.632 3.32 0.00 0.00 2.83
3363 3943 1.466167 CTGGCCTTCATGTTTGAGTCG 59.534 52.381 3.32 0.00 32.27 4.18
3366 3946 1.813513 CCTTCATGTTTGAGTCGGCT 58.186 50.000 0.00 0.00 32.27 5.52
3450 4030 1.502163 GCTGGATCGGGCTCAAATCG 61.502 60.000 1.95 0.00 0.00 3.34
3459 4039 0.371645 GGCTCAAATCGCACTTCTCG 59.628 55.000 0.00 0.00 0.00 4.04
3483 4063 1.956477 GGCAAAGATGGCGGTTATGAT 59.044 47.619 0.00 0.00 42.73 2.45
3539 4119 2.352814 GCGAGAAGTAGCTCTGTTTCCA 60.353 50.000 0.00 0.00 32.71 3.53
3558 4138 5.512942 TCCACAGGTAGGAAATGAAATGA 57.487 39.130 0.00 0.00 30.71 2.57
3559 4139 5.886609 TCCACAGGTAGGAAATGAAATGAA 58.113 37.500 0.00 0.00 30.71 2.57
3560 4140 6.310941 TCCACAGGTAGGAAATGAAATGAAA 58.689 36.000 0.00 0.00 30.71 2.69
3624 4204 6.003859 TGTTACCTGTGTAAAGGGAGAAAA 57.996 37.500 0.00 0.00 42.11 2.29
3648 4228 6.180472 ACAAACAGTAATCAATCCAGTAGGG 58.820 40.000 0.00 0.00 34.83 3.53
3710 4290 5.507817 CCATCCAACATGCCAATGTGTATAC 60.508 44.000 0.00 0.00 46.58 1.47
3749 4345 4.634199 AGCAAGCAAAAGCATGTACATTT 58.366 34.783 5.37 0.00 0.00 2.32
3765 4365 5.817296 TGTACATTTATGGTGATGAGCAGTC 59.183 40.000 0.00 0.00 31.77 3.51
3767 4367 3.610040 TTTATGGTGATGAGCAGTCGT 57.390 42.857 0.00 0.00 31.77 4.34
3789 4389 3.896648 TTTCTTTTCTGGTTAGCAGCG 57.103 42.857 6.54 0.00 0.00 5.18
3813 4413 6.293407 CGTATTTATTGGCTGATTGTACCCTG 60.293 42.308 0.00 0.00 0.00 4.45
3814 4414 2.442236 ATTGGCTGATTGTACCCTGG 57.558 50.000 0.00 0.00 0.00 4.45
3905 4505 7.996758 TGAAAGAGGATCCTAGTTAATTCCT 57.003 36.000 16.16 0.52 39.50 3.36
4034 4796 9.112725 TGAGTATAATGTGATTGTTTCATGGAG 57.887 33.333 0.00 0.00 36.54 3.86
4212 5011 4.157840 ACGTATTGCCTTCTTTGAATTCCC 59.842 41.667 2.27 0.00 0.00 3.97
4223 5022 6.308371 TCTTTGAATTCCCGTTTGTAACTC 57.692 37.500 2.27 0.00 0.00 3.01
4230 5029 5.534207 TTCCCGTTTGTAACTCTGAACTA 57.466 39.130 0.00 0.00 0.00 2.24
4240 5039 7.305813 TGTAACTCTGAACTATGGTGGTTTA 57.694 36.000 0.00 0.00 0.00 2.01
4251 5050 9.783256 GAACTATGGTGGTTTATTGTTTGTATC 57.217 33.333 0.00 0.00 0.00 2.24
4369 5170 5.931146 CCATGATCAATTCCTAGTAGTCAGC 59.069 44.000 0.00 0.00 0.00 4.26
4391 5192 5.996669 CACTGATGCTGATATTGCTACAA 57.003 39.130 3.85 0.00 0.00 2.41
4394 5195 7.423199 CACTGATGCTGATATTGCTACAATTT 58.577 34.615 0.00 0.00 0.00 1.82
4401 5202 6.195244 GCTGATATTGCTACAATTTGTTCACG 59.805 38.462 7.45 0.43 0.00 4.35
4414 5215 5.614923 TTTGTTCACGTTGAGAAAGAACA 57.385 34.783 10.30 10.30 44.62 3.18
4415 5216 5.811399 TTGTTCACGTTGAGAAAGAACAT 57.189 34.783 13.89 0.00 45.31 2.71
4416 5217 5.811399 TGTTCACGTTGAGAAAGAACATT 57.189 34.783 10.30 0.00 42.35 2.71
4419 5220 7.925993 TGTTCACGTTGAGAAAGAACATTATT 58.074 30.769 10.30 0.00 42.35 1.40
4423 5224 8.218441 TCACGTTGAGAAAGAACATTATTAACG 58.782 33.333 10.83 10.83 44.14 3.18
4456 5257 2.671963 GGGGGCGACAAACTCCAC 60.672 66.667 0.00 0.00 0.00 4.02
4458 5259 1.966451 GGGGCGACAAACTCCACAG 60.966 63.158 0.00 0.00 0.00 3.66
4459 5260 2.617274 GGGCGACAAACTCCACAGC 61.617 63.158 0.00 0.00 0.00 4.40
4473 5274 0.729140 CACAGCGAAATCGGCCAAAC 60.729 55.000 2.24 0.00 40.23 2.93
4475 5276 0.729140 CAGCGAAATCGGCCAAACAC 60.729 55.000 2.24 0.00 40.23 3.32
4479 5280 1.790123 CGAAATCGGCCAAACACATCG 60.790 52.381 2.24 0.00 35.37 3.84
4482 5283 1.358725 ATCGGCCAAACACATCGTCG 61.359 55.000 2.24 0.00 0.00 5.12
4517 5318 3.552132 TTGTTTCAGAGTGCACCTACA 57.448 42.857 14.63 8.95 0.00 2.74
4518 5319 2.833794 TGTTTCAGAGTGCACCTACAC 58.166 47.619 14.63 3.93 41.02 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.475403 CGACACTATGGAGTCAGGGT 58.525 55.000 7.37 0.00 33.66 4.34
39 40 1.066303 GAGCCGACACTATGGAGTCAG 59.934 57.143 7.37 0.00 33.66 3.51
101 105 0.620556 GAGAGGGGTTCTGATTGCCA 59.379 55.000 0.00 0.00 35.87 4.92
138 142 1.195115 GTGGGACTCATAGTCTGCCA 58.805 55.000 6.99 4.38 44.46 4.92
176 180 2.050918 CCTTATCCTCTCCTTCCCACC 58.949 57.143 0.00 0.00 0.00 4.61
318 348 2.496341 CGATTCTGCTCTCGGGCA 59.504 61.111 0.00 0.00 40.15 5.36
375 411 2.577059 CCGAAGCTGTCCGCCTTA 59.423 61.111 0.00 0.00 40.39 2.69
458 542 2.819984 TTCATCCACGGCTGCCCTTC 62.820 60.000 14.12 0.00 0.00 3.46
553 638 3.492421 ACCATCGATGCACAAACATTC 57.508 42.857 20.25 0.00 0.00 2.67
559 644 1.737236 GCAACTACCATCGATGCACAA 59.263 47.619 20.25 3.72 37.00 3.33
572 660 6.924060 ACTATCTCAAATCCATACGCAACTAC 59.076 38.462 0.00 0.00 0.00 2.73
596 692 4.453751 ACAGAGGGAGTAATCTCTCGTAC 58.546 47.826 14.09 0.00 45.21 3.67
597 693 4.774660 ACAGAGGGAGTAATCTCTCGTA 57.225 45.455 14.09 0.00 45.21 3.43
598 694 3.655615 ACAGAGGGAGTAATCTCTCGT 57.344 47.619 14.09 12.00 45.21 4.18
599 695 5.591067 AGTTTACAGAGGGAGTAATCTCTCG 59.409 44.000 14.09 11.42 45.21 4.04
600 696 8.522542 TTAGTTTACAGAGGGAGTAATCTCTC 57.477 38.462 12.20 12.20 41.23 3.20
608 704 9.656323 TCACATATATTAGTTTACAGAGGGAGT 57.344 33.333 0.00 0.00 0.00 3.85
645 741 9.485206 TCTTAAACTAGCGATCTAAACACTTTT 57.515 29.630 0.00 0.00 0.00 2.27
646 742 9.141400 CTCTTAAACTAGCGATCTAAACACTTT 57.859 33.333 0.00 0.00 0.00 2.66
647 743 8.305317 ACTCTTAAACTAGCGATCTAAACACTT 58.695 33.333 0.00 0.00 0.00 3.16
648 744 7.828712 ACTCTTAAACTAGCGATCTAAACACT 58.171 34.615 0.00 0.00 0.00 3.55
649 745 9.008289 GTACTCTTAAACTAGCGATCTAAACAC 57.992 37.037 0.00 0.00 0.00 3.32
650 746 8.733458 TGTACTCTTAAACTAGCGATCTAAACA 58.267 33.333 0.00 0.00 0.00 2.83
651 747 9.733219 ATGTACTCTTAAACTAGCGATCTAAAC 57.267 33.333 0.00 0.00 0.00 2.01
655 751 9.122779 AGTAATGTACTCTTAAACTAGCGATCT 57.877 33.333 0.00 0.00 32.47 2.75
656 752 9.733219 AAGTAATGTACTCTTAAACTAGCGATC 57.267 33.333 0.00 0.00 38.26 3.69
663 759 9.109246 ACCCCTTAAGTAATGTACTCTTAAACT 57.891 33.333 0.97 0.00 38.26 2.66
664 760 9.159364 CACCCCTTAAGTAATGTACTCTTAAAC 57.841 37.037 0.97 0.00 38.26 2.01
665 761 7.825761 GCACCCCTTAAGTAATGTACTCTTAAA 59.174 37.037 0.97 0.00 38.26 1.52
666 762 7.333323 GCACCCCTTAAGTAATGTACTCTTAA 58.667 38.462 0.97 4.22 38.26 1.85
667 763 6.126968 GGCACCCCTTAAGTAATGTACTCTTA 60.127 42.308 0.97 0.00 38.26 2.10
668 764 5.338953 GGCACCCCTTAAGTAATGTACTCTT 60.339 44.000 0.97 0.00 38.26 2.85
669 765 4.163649 GGCACCCCTTAAGTAATGTACTCT 59.836 45.833 0.97 0.00 38.26 3.24
670 766 4.449131 GGCACCCCTTAAGTAATGTACTC 58.551 47.826 0.97 0.00 38.26 2.59
671 767 4.498894 GGCACCCCTTAAGTAATGTACT 57.501 45.455 0.97 0.00 41.73 2.73
688 784 3.124921 CGGACATTGACCGGGCAC 61.125 66.667 11.33 0.00 45.65 5.01
694 790 3.124921 CACCCGCGGACATTGACC 61.125 66.667 30.73 0.00 0.00 4.02
695 791 1.964373 AACACCCGCGGACATTGAC 60.964 57.895 30.73 0.00 0.00 3.18
696 792 1.963855 CAACACCCGCGGACATTGA 60.964 57.895 30.73 0.00 0.00 2.57
697 793 2.560861 CAACACCCGCGGACATTG 59.439 61.111 30.73 22.25 0.00 2.82
698 794 2.671619 CCAACACCCGCGGACATT 60.672 61.111 30.73 14.56 0.00 2.71
699 795 3.605749 CTCCAACACCCGCGGACAT 62.606 63.158 30.73 9.03 0.00 3.06
700 796 4.308458 CTCCAACACCCGCGGACA 62.308 66.667 30.73 0.21 0.00 4.02
708 804 2.781431 AAATCCGGCCCTCCAACACC 62.781 60.000 0.00 0.00 0.00 4.16
709 805 0.034863 TAAATCCGGCCCTCCAACAC 60.035 55.000 0.00 0.00 0.00 3.32
710 806 0.034863 GTAAATCCGGCCCTCCAACA 60.035 55.000 0.00 0.00 0.00 3.33
711 807 0.750546 GGTAAATCCGGCCCTCCAAC 60.751 60.000 0.00 0.00 0.00 3.77
712 808 1.208844 TGGTAAATCCGGCCCTCCAA 61.209 55.000 0.00 0.00 39.52 3.53
713 809 1.208844 TTGGTAAATCCGGCCCTCCA 61.209 55.000 0.00 0.00 39.52 3.86
714 810 0.465642 CTTGGTAAATCCGGCCCTCC 60.466 60.000 0.00 0.00 39.52 4.30
715 811 0.255033 ACTTGGTAAATCCGGCCCTC 59.745 55.000 0.00 0.00 39.52 4.30
716 812 0.255033 GACTTGGTAAATCCGGCCCT 59.745 55.000 0.00 0.00 39.52 5.19
717 813 1.093496 CGACTTGGTAAATCCGGCCC 61.093 60.000 0.00 0.00 39.52 5.80
718 814 0.392060 ACGACTTGGTAAATCCGGCC 60.392 55.000 0.00 0.00 39.52 6.13
719 815 0.725117 CACGACTTGGTAAATCCGGC 59.275 55.000 0.00 0.00 39.52 6.13
720 816 1.730064 CACACGACTTGGTAAATCCGG 59.270 52.381 0.00 0.00 39.52 5.14
721 817 2.409975 ACACACGACTTGGTAAATCCG 58.590 47.619 0.00 0.00 39.52 4.18
722 818 7.599630 TTATTACACACGACTTGGTAAATCC 57.400 36.000 0.00 0.00 29.84 3.01
726 822 8.658609 GCTTTATTATTACACACGACTTGGTAA 58.341 33.333 0.00 0.00 0.00 2.85
727 823 7.818446 TGCTTTATTATTACACACGACTTGGTA 59.182 33.333 0.00 0.00 0.00 3.25
728 824 6.651643 TGCTTTATTATTACACACGACTTGGT 59.348 34.615 0.00 0.00 0.00 3.67
729 825 7.067532 TGCTTTATTATTACACACGACTTGG 57.932 36.000 0.00 0.00 0.00 3.61
730 826 9.554724 AAATGCTTTATTATTACACACGACTTG 57.445 29.630 0.00 0.00 0.00 3.16
732 828 9.554724 CAAAATGCTTTATTATTACACACGACT 57.445 29.630 0.00 0.00 0.00 4.18
733 829 8.794406 CCAAAATGCTTTATTATTACACACGAC 58.206 33.333 0.00 0.00 0.00 4.34
734 830 7.971168 CCCAAAATGCTTTATTATTACACACGA 59.029 33.333 0.00 0.00 0.00 4.35
735 831 7.971168 TCCCAAAATGCTTTATTATTACACACG 59.029 33.333 0.00 0.00 0.00 4.49
736 832 9.816354 ATCCCAAAATGCTTTATTATTACACAC 57.184 29.630 0.00 0.00 0.00 3.82
737 833 9.814899 CATCCCAAAATGCTTTATTATTACACA 57.185 29.630 0.00 0.00 0.00 3.72
742 838 9.991906 CATCTCATCCCAAAATGCTTTATTATT 57.008 29.630 0.00 0.00 0.00 1.40
743 839 8.591072 CCATCTCATCCCAAAATGCTTTATTAT 58.409 33.333 0.00 0.00 0.00 1.28
744 840 7.015487 CCCATCTCATCCCAAAATGCTTTATTA 59.985 37.037 0.00 0.00 0.00 0.98
745 841 6.183361 CCCATCTCATCCCAAAATGCTTTATT 60.183 38.462 0.00 0.00 0.00 1.40
746 842 5.306160 CCCATCTCATCCCAAAATGCTTTAT 59.694 40.000 0.00 0.00 0.00 1.40
747 843 4.650588 CCCATCTCATCCCAAAATGCTTTA 59.349 41.667 0.00 0.00 0.00 1.85
748 844 3.453353 CCCATCTCATCCCAAAATGCTTT 59.547 43.478 0.00 0.00 0.00 3.51
749 845 3.036091 CCCATCTCATCCCAAAATGCTT 58.964 45.455 0.00 0.00 0.00 3.91
750 846 2.245546 TCCCATCTCATCCCAAAATGCT 59.754 45.455 0.00 0.00 0.00 3.79
751 847 2.626743 CTCCCATCTCATCCCAAAATGC 59.373 50.000 0.00 0.00 0.00 3.56
752 848 3.228453 CCTCCCATCTCATCCCAAAATG 58.772 50.000 0.00 0.00 0.00 2.32
753 849 2.425392 GCCTCCCATCTCATCCCAAAAT 60.425 50.000 0.00 0.00 0.00 1.82
754 850 1.063717 GCCTCCCATCTCATCCCAAAA 60.064 52.381 0.00 0.00 0.00 2.44
755 851 0.552848 GCCTCCCATCTCATCCCAAA 59.447 55.000 0.00 0.00 0.00 3.28
756 852 0.327867 AGCCTCCCATCTCATCCCAA 60.328 55.000 0.00 0.00 0.00 4.12
757 853 0.567687 TAGCCTCCCATCTCATCCCA 59.432 55.000 0.00 0.00 0.00 4.37
758 854 0.980423 GTAGCCTCCCATCTCATCCC 59.020 60.000 0.00 0.00 0.00 3.85
759 855 0.605589 CGTAGCCTCCCATCTCATCC 59.394 60.000 0.00 0.00 0.00 3.51
760 856 0.605589 CCGTAGCCTCCCATCTCATC 59.394 60.000 0.00 0.00 0.00 2.92
761 857 1.476007 GCCGTAGCCTCCCATCTCAT 61.476 60.000 0.00 0.00 0.00 2.90
762 858 2.134287 GCCGTAGCCTCCCATCTCA 61.134 63.158 0.00 0.00 0.00 3.27
763 859 2.737830 GCCGTAGCCTCCCATCTC 59.262 66.667 0.00 0.00 0.00 2.75
764 860 3.227276 CGCCGTAGCCTCCCATCT 61.227 66.667 0.00 0.00 34.57 2.90
765 861 4.971125 GCGCCGTAGCCTCCCATC 62.971 72.222 0.00 0.00 34.57 3.51
792 888 0.179134 CTACTACTCACGGTGCTGCC 60.179 60.000 2.51 0.00 0.00 4.85
793 889 0.526662 ACTACTACTCACGGTGCTGC 59.473 55.000 2.51 0.00 0.00 5.25
794 890 1.732732 GCACTACTACTCACGGTGCTG 60.733 57.143 2.51 1.40 46.39 4.41
795 891 0.526662 GCACTACTACTCACGGTGCT 59.473 55.000 2.51 0.00 46.39 4.40
796 892 3.031660 GCACTACTACTCACGGTGC 57.968 57.895 2.51 0.00 44.53 5.01
797 893 2.596452 CAAGCACTACTACTCACGGTG 58.404 52.381 0.56 0.56 0.00 4.94
798 894 1.544691 CCAAGCACTACTACTCACGGT 59.455 52.381 0.00 0.00 0.00 4.83
799 895 1.736032 GCCAAGCACTACTACTCACGG 60.736 57.143 0.00 0.00 0.00 4.94
800 896 1.202582 AGCCAAGCACTACTACTCACG 59.797 52.381 0.00 0.00 0.00 4.35
801 897 2.611518 CAGCCAAGCACTACTACTCAC 58.388 52.381 0.00 0.00 0.00 3.51
802 898 1.066858 GCAGCCAAGCACTACTACTCA 60.067 52.381 0.00 0.00 0.00 3.41
803 899 1.205893 AGCAGCCAAGCACTACTACTC 59.794 52.381 0.00 0.00 36.85 2.59
804 900 1.270907 AGCAGCCAAGCACTACTACT 58.729 50.000 0.00 0.00 36.85 2.57
805 901 1.734465 CAAGCAGCCAAGCACTACTAC 59.266 52.381 0.00 0.00 36.85 2.73
806 902 1.945819 GCAAGCAGCCAAGCACTACTA 60.946 52.381 0.00 0.00 37.23 1.82
807 903 1.239968 GCAAGCAGCCAAGCACTACT 61.240 55.000 0.00 0.00 37.23 2.57
808 904 1.211190 GCAAGCAGCCAAGCACTAC 59.789 57.895 0.00 0.00 37.23 2.73
809 905 3.672293 GCAAGCAGCCAAGCACTA 58.328 55.556 0.00 0.00 37.23 2.74
818 914 2.482490 CCAAATCCCAATAGCAAGCAGC 60.482 50.000 0.00 0.00 46.19 5.25
819 915 2.101917 CCCAAATCCCAATAGCAAGCAG 59.898 50.000 0.00 0.00 0.00 4.24
820 916 2.109774 CCCAAATCCCAATAGCAAGCA 58.890 47.619 0.00 0.00 0.00 3.91
821 917 2.363359 CTCCCAAATCCCAATAGCAAGC 59.637 50.000 0.00 0.00 0.00 4.01
822 918 3.887716 CTCTCCCAAATCCCAATAGCAAG 59.112 47.826 0.00 0.00 0.00 4.01
823 919 3.527253 TCTCTCCCAAATCCCAATAGCAA 59.473 43.478 0.00 0.00 0.00 3.91
824 920 3.122480 TCTCTCCCAAATCCCAATAGCA 58.878 45.455 0.00 0.00 0.00 3.49
825 921 3.137360 ACTCTCTCCCAAATCCCAATAGC 59.863 47.826 0.00 0.00 0.00 2.97
826 922 5.379706 AACTCTCTCCCAAATCCCAATAG 57.620 43.478 0.00 0.00 0.00 1.73
827 923 5.796502 AAACTCTCTCCCAAATCCCAATA 57.203 39.130 0.00 0.00 0.00 1.90
828 924 4.682021 AAACTCTCTCCCAAATCCCAAT 57.318 40.909 0.00 0.00 0.00 3.16
829 925 4.141041 TGAAAACTCTCTCCCAAATCCCAA 60.141 41.667 0.00 0.00 0.00 4.12
830 926 3.397618 TGAAAACTCTCTCCCAAATCCCA 59.602 43.478 0.00 0.00 0.00 4.37
831 927 4.034285 TGAAAACTCTCTCCCAAATCCC 57.966 45.455 0.00 0.00 0.00 3.85
832 928 5.378292 GTTGAAAACTCTCTCCCAAATCC 57.622 43.478 0.00 0.00 45.32 3.01
847 943 3.627577 GGAGCAAGTGTCTGAGTTGAAAA 59.372 43.478 0.00 0.00 37.18 2.29
848 944 3.206150 GGAGCAAGTGTCTGAGTTGAAA 58.794 45.455 0.00 0.00 37.18 2.69
849 945 2.170397 TGGAGCAAGTGTCTGAGTTGAA 59.830 45.455 0.00 0.00 37.18 2.69
850 946 1.762370 TGGAGCAAGTGTCTGAGTTGA 59.238 47.619 0.00 0.00 37.18 3.18
851 947 2.245159 TGGAGCAAGTGTCTGAGTTG 57.755 50.000 0.00 0.00 37.96 3.16
852 948 2.289945 GGATGGAGCAAGTGTCTGAGTT 60.290 50.000 0.00 0.00 0.00 3.01
853 949 1.277557 GGATGGAGCAAGTGTCTGAGT 59.722 52.381 0.00 0.00 0.00 3.41
854 950 1.554160 AGGATGGAGCAAGTGTCTGAG 59.446 52.381 0.00 0.00 0.00 3.35
855 951 1.277273 CAGGATGGAGCAAGTGTCTGA 59.723 52.381 0.00 0.00 0.00 3.27
856 952 1.002888 ACAGGATGGAGCAAGTGTCTG 59.997 52.381 0.00 0.00 43.62 3.51
857 953 1.277557 GACAGGATGGAGCAAGTGTCT 59.722 52.381 0.00 0.00 43.62 3.41
858 954 1.677217 GGACAGGATGGAGCAAGTGTC 60.677 57.143 0.00 0.00 43.62 3.67
859 955 0.326264 GGACAGGATGGAGCAAGTGT 59.674 55.000 0.00 0.00 43.62 3.55
860 956 0.325933 TGGACAGGATGGAGCAAGTG 59.674 55.000 0.00 0.00 43.62 3.16
861 957 1.293062 ATGGACAGGATGGAGCAAGT 58.707 50.000 0.00 0.00 43.62 3.16
862 958 2.022195 CAATGGACAGGATGGAGCAAG 58.978 52.381 0.00 0.00 43.62 4.01
863 959 1.341285 CCAATGGACAGGATGGAGCAA 60.341 52.381 0.00 0.00 43.62 3.91
864 960 0.256752 CCAATGGACAGGATGGAGCA 59.743 55.000 0.00 0.00 43.62 4.26
865 961 1.105759 GCCAATGGACAGGATGGAGC 61.106 60.000 2.05 0.00 43.62 4.70
866 962 0.256752 TGCCAATGGACAGGATGGAG 59.743 55.000 2.05 0.00 43.62 3.86
867 963 0.034186 GTGCCAATGGACAGGATGGA 60.034 55.000 2.05 0.00 43.62 3.41
868 964 1.378882 CGTGCCAATGGACAGGATGG 61.379 60.000 2.05 0.00 43.62 3.51
869 965 1.378882 CCGTGCCAATGGACAGGATG 61.379 60.000 2.05 0.00 46.00 3.51
870 966 1.077501 CCGTGCCAATGGACAGGAT 60.078 57.895 2.05 0.00 33.87 3.24
871 967 2.350895 CCGTGCCAATGGACAGGA 59.649 61.111 2.05 0.00 33.87 3.86
872 968 3.443045 GCCGTGCCAATGGACAGG 61.443 66.667 2.05 6.45 33.87 4.00
873 969 2.672651 TGCCGTGCCAATGGACAG 60.673 61.111 2.05 0.00 33.87 3.51
874 970 2.983030 GTGCCGTGCCAATGGACA 60.983 61.111 2.05 0.00 33.87 4.02
875 971 4.101790 CGTGCCGTGCCAATGGAC 62.102 66.667 2.05 0.00 33.87 4.02
878 974 3.099619 CTAGCGTGCCGTGCCAATG 62.100 63.158 0.00 0.00 0.00 2.82
879 975 2.819595 CTAGCGTGCCGTGCCAAT 60.820 61.111 0.00 0.00 0.00 3.16
901 997 4.704833 CTCTGGTGGTGGTGGCCG 62.705 72.222 0.00 0.00 0.00 6.13
902 998 3.249189 TCTCTGGTGGTGGTGGCC 61.249 66.667 0.00 0.00 0.00 5.36
903 999 2.177594 CTCTCTCTGGTGGTGGTGGC 62.178 65.000 0.00 0.00 0.00 5.01
904 1000 1.548357 CCTCTCTCTGGTGGTGGTGG 61.548 65.000 0.00 0.00 0.00 4.61
905 1001 1.978473 CCTCTCTCTGGTGGTGGTG 59.022 63.158 0.00 0.00 0.00 4.17
906 1002 1.915769 GCCTCTCTCTGGTGGTGGT 60.916 63.158 0.00 0.00 0.00 4.16
907 1003 1.611851 AGCCTCTCTCTGGTGGTGG 60.612 63.158 0.00 0.00 0.00 4.61
908 1004 1.612395 GGAGCCTCTCTCTGGTGGTG 61.612 65.000 0.00 0.00 41.60 4.17
909 1005 1.305718 GGAGCCTCTCTCTGGTGGT 60.306 63.158 0.00 0.00 41.60 4.16
910 1006 1.001503 AGGAGCCTCTCTCTGGTGG 59.998 63.158 0.00 0.00 41.60 4.61
911 1007 0.324183 TGAGGAGCCTCTCTCTGGTG 60.324 60.000 16.87 0.00 43.12 4.17
912 1008 0.324275 GTGAGGAGCCTCTCTCTGGT 60.324 60.000 16.87 0.00 43.12 4.00
913 1009 0.033208 AGTGAGGAGCCTCTCTCTGG 60.033 60.000 16.87 0.00 41.34 3.86
914 1010 3.594453 AGTGAGGAGCCTCTCTCTG 57.406 57.895 16.87 0.00 41.34 3.35
917 1013 1.309688 GGGAGTGAGGAGCCTCTCT 59.690 63.158 18.22 18.22 45.84 3.10
918 1014 1.000993 TGGGAGTGAGGAGCCTCTC 59.999 63.158 16.87 13.32 43.12 3.20
919 1015 1.305718 GTGGGAGTGAGGAGCCTCT 60.306 63.158 16.87 0.00 43.12 3.69
920 1016 1.610673 TGTGGGAGTGAGGAGCCTC 60.611 63.158 9.61 9.61 43.01 4.70
921 1017 1.915769 GTGTGGGAGTGAGGAGCCT 60.916 63.158 0.00 0.00 0.00 4.58
922 1018 2.665603 GTGTGGGAGTGAGGAGCC 59.334 66.667 0.00 0.00 0.00 4.70
923 1019 2.262915 CGTGTGGGAGTGAGGAGC 59.737 66.667 0.00 0.00 0.00 4.70
924 1020 2.262915 GCGTGTGGGAGTGAGGAG 59.737 66.667 0.00 0.00 0.00 3.69
925 1021 3.311110 GGCGTGTGGGAGTGAGGA 61.311 66.667 0.00 0.00 0.00 3.71
926 1022 3.302347 GAGGCGTGTGGGAGTGAGG 62.302 68.421 0.00 0.00 0.00 3.86
965 1061 4.717629 CAAGCGAGTGTCCGGCGA 62.718 66.667 9.30 0.00 0.00 5.54
968 1064 4.680237 TGGCAAGCGAGTGTCCGG 62.680 66.667 0.00 0.00 0.00 5.14
969 1065 3.414700 GTGGCAAGCGAGTGTCCG 61.415 66.667 0.00 0.00 0.00 4.79
970 1066 3.050275 GGTGGCAAGCGAGTGTCC 61.050 66.667 0.00 0.00 0.00 4.02
972 1068 2.591715 GTGGTGGCAAGCGAGTGT 60.592 61.111 0.00 0.00 0.00 3.55
974 1070 2.281070 CTGTGGTGGCAAGCGAGT 60.281 61.111 0.00 0.00 0.00 4.18
976 1072 4.560743 TGCTGTGGTGGCAAGCGA 62.561 61.111 4.59 0.00 36.71 4.93
978 1074 2.595463 TCTGCTGTGGTGGCAAGC 60.595 61.111 1.96 1.96 39.30 4.01
979 1075 1.526686 TGTCTGCTGTGGTGGCAAG 60.527 57.895 0.00 0.00 39.30 4.01
980 1076 1.823470 GTGTCTGCTGTGGTGGCAA 60.823 57.895 0.00 0.00 39.30 4.52
981 1077 2.203195 GTGTCTGCTGTGGTGGCA 60.203 61.111 0.00 0.00 38.10 4.92
983 1079 1.073722 ATGGTGTCTGCTGTGGTGG 59.926 57.895 0.00 0.00 0.00 4.61
986 1082 0.957395 GGACATGGTGTCTGCTGTGG 60.957 60.000 9.66 0.00 46.19 4.17
988 1084 1.004560 CGGACATGGTGTCTGCTGT 60.005 57.895 9.66 0.00 45.52 4.40
989 1085 3.880591 CGGACATGGTGTCTGCTG 58.119 61.111 9.66 0.00 45.52 4.41
1209 1323 1.740025 GGCAGTAGTAGGTACGTTCGT 59.260 52.381 0.00 2.91 36.66 3.85
1212 1326 3.694926 AGAAGGCAGTAGTAGGTACGTT 58.305 45.455 0.00 0.00 36.66 3.99
1223 1337 3.521727 AGAAAGGAGGAAGAAGGCAGTA 58.478 45.455 0.00 0.00 0.00 2.74
1224 1338 2.343625 AGAAAGGAGGAAGAAGGCAGT 58.656 47.619 0.00 0.00 0.00 4.40
1225 1339 3.431673 AAGAAAGGAGGAAGAAGGCAG 57.568 47.619 0.00 0.00 0.00 4.85
1226 1340 3.395941 AGAAAGAAAGGAGGAAGAAGGCA 59.604 43.478 0.00 0.00 0.00 4.75
1227 1341 4.027674 AGAAAGAAAGGAGGAAGAAGGC 57.972 45.455 0.00 0.00 0.00 4.35
1228 1342 5.007034 GGAAGAAAGAAAGGAGGAAGAAGG 58.993 45.833 0.00 0.00 0.00 3.46
1246 1360 1.556911 GATTCAGCCTCCACTGGAAGA 59.443 52.381 0.00 0.00 38.26 2.87
1255 1387 1.876322 CGGATCTTGATTCAGCCTCC 58.124 55.000 0.00 0.00 0.00 4.30
1284 1429 7.867403 CCAAATCAAATCGGAAAGAAAGAAAGA 59.133 33.333 0.00 0.00 0.00 2.52
1285 1430 7.359514 GCCAAATCAAATCGGAAAGAAAGAAAG 60.360 37.037 0.00 0.00 0.00 2.62
1286 1431 6.423604 GCCAAATCAAATCGGAAAGAAAGAAA 59.576 34.615 0.00 0.00 0.00 2.52
1287 1432 5.925969 GCCAAATCAAATCGGAAAGAAAGAA 59.074 36.000 0.00 0.00 0.00 2.52
1288 1433 5.243730 AGCCAAATCAAATCGGAAAGAAAGA 59.756 36.000 0.00 0.00 0.00 2.52
1289 1434 5.346822 CAGCCAAATCAAATCGGAAAGAAAG 59.653 40.000 0.00 0.00 0.00 2.62
1290 1435 5.229423 CAGCCAAATCAAATCGGAAAGAAA 58.771 37.500 0.00 0.00 0.00 2.52
1291 1436 4.808558 CAGCCAAATCAAATCGGAAAGAA 58.191 39.130 0.00 0.00 0.00 2.52
1292 1437 3.367292 GCAGCCAAATCAAATCGGAAAGA 60.367 43.478 0.00 0.00 0.00 2.52
1305 1450 0.251922 ACATCCACCTGCAGCCAAAT 60.252 50.000 8.66 0.00 0.00 2.32
1308 1453 1.299648 GTACATCCACCTGCAGCCA 59.700 57.895 8.66 0.00 0.00 4.75
1309 1454 1.452108 GGTACATCCACCTGCAGCC 60.452 63.158 8.66 0.00 35.55 4.85
1479 1624 1.590259 GATGAAGTCGAGCTCCGGC 60.590 63.158 8.47 5.05 44.58 6.13
1480 1625 4.719997 GATGAAGTCGAGCTCCGG 57.280 61.111 8.47 0.00 39.14 5.14
1495 1640 2.478890 CGGTGTAGAGGCCGTCGAT 61.479 63.158 0.00 0.00 42.73 3.59
1567 1712 2.685522 GCAGAGGAGCAGAGTAGGTACT 60.686 54.545 0.00 0.00 46.37 2.73
1568 1713 1.679153 GCAGAGGAGCAGAGTAGGTAC 59.321 57.143 0.00 0.00 0.00 3.34
1569 1714 1.566703 AGCAGAGGAGCAGAGTAGGTA 59.433 52.381 0.00 0.00 36.85 3.08
1570 1715 0.334676 AGCAGAGGAGCAGAGTAGGT 59.665 55.000 0.00 0.00 36.85 3.08
1571 1716 1.408702 GAAGCAGAGGAGCAGAGTAGG 59.591 57.143 0.00 0.00 36.85 3.18
1573 1718 2.523325 AGAAGCAGAGGAGCAGAGTA 57.477 50.000 0.00 0.00 36.85 2.59
1582 1736 4.159506 AGCTACAGTAGAAAGAAGCAGAGG 59.840 45.833 12.15 0.00 32.42 3.69
1608 1762 5.592282 TGGTTCAGTTCAGTTGAGCAATTAA 59.408 36.000 0.00 0.00 0.00 1.40
1649 1808 3.695606 TGGAGTGGAGTGGCGAGC 61.696 66.667 0.00 0.00 0.00 5.03
1653 1812 0.603975 GAACTGTGGAGTGGAGTGGC 60.604 60.000 0.00 0.00 30.61 5.01
1678 1842 3.498397 TCTGAAATTTCGAGCTGGTGAAC 59.502 43.478 13.34 0.00 0.00 3.18
1683 1847 2.426522 TGGTCTGAAATTTCGAGCTGG 58.573 47.619 26.69 0.00 33.08 4.85
1687 1851 8.430063 CAATCAATTTTGGTCTGAAATTTCGAG 58.570 33.333 13.34 11.35 35.21 4.04
1690 1854 7.173735 AGCCAATCAATTTTGGTCTGAAATTTC 59.826 33.333 11.41 11.41 46.54 2.17
1711 1875 3.517296 TTAACAGGGTCAATCAGCCAA 57.483 42.857 0.00 0.00 46.35 4.52
1724 1888 1.679680 CAGGGCATGAGCATTAACAGG 59.320 52.381 0.00 0.00 44.61 4.00
1728 1892 2.806434 ACAACAGGGCATGAGCATTAA 58.194 42.857 5.99 0.00 44.61 1.40
1730 1894 1.547372 GAACAACAGGGCATGAGCATT 59.453 47.619 5.99 0.00 44.61 3.56
1744 1921 1.654023 GGCGGCATACCTGGAACAAC 61.654 60.000 3.07 0.00 38.70 3.32
1823 2000 1.197430 AGGACTCACTCCCTTGCTGG 61.197 60.000 0.00 0.00 40.53 4.85
1845 2022 1.970640 GAATTTGGTGGGTTGAAGCCT 59.029 47.619 15.13 0.00 36.53 4.58
1878 2064 4.246458 CAGGTTGGTAGCTAGACAAAGAC 58.754 47.826 11.26 6.52 0.00 3.01
1884 2070 3.679824 ACAACAGGTTGGTAGCTAGAC 57.320 47.619 15.84 0.00 44.45 2.59
1896 2082 2.418368 TGAACAGAGCAACAACAGGT 57.582 45.000 0.00 0.00 0.00 4.00
1899 2085 3.213206 AGGATGAACAGAGCAACAACA 57.787 42.857 0.00 0.00 0.00 3.33
1900 2086 3.565482 TCAAGGATGAACAGAGCAACAAC 59.435 43.478 0.00 0.00 30.99 3.32
1901 2087 3.819368 TCAAGGATGAACAGAGCAACAA 58.181 40.909 0.00 0.00 30.99 2.83
1917 2103 4.277515 TCTGAGACAGTTCCAATCAAGG 57.722 45.455 0.00 0.00 32.61 3.61
1931 2117 4.399004 AGTGTGGCTGAATATCTGAGAC 57.601 45.455 0.00 0.00 0.00 3.36
1937 2123 4.408182 AGTGGTAGTGTGGCTGAATATC 57.592 45.455 0.00 0.00 0.00 1.63
1948 2374 6.890268 TGTGATGATAACTCTAGTGGTAGTGT 59.110 38.462 0.00 0.00 35.02 3.55
1974 2400 6.200854 CAGAATTTTGGGTAACAACAGAAAGC 59.799 38.462 0.00 0.00 39.19 3.51
1978 2404 5.300792 GGACAGAATTTTGGGTAACAACAGA 59.699 40.000 0.57 0.00 39.19 3.41
2018 2462 4.154015 TCAATTGCACATAACGACAGAAGG 59.846 41.667 0.00 0.00 0.00 3.46
2063 2527 8.515414 AGCATAACTGAACAGGAATTTTTAGTC 58.485 33.333 6.76 0.00 0.00 2.59
2108 2610 2.695666 ACCGTAGAAGGTGATGAGGATG 59.304 50.000 0.00 0.00 44.07 3.51
2124 2626 1.310904 GGCTTGACACCAAAACCGTA 58.689 50.000 0.00 0.00 0.00 4.02
2333 2835 3.165058 TGCAGTAGAATACAGAAGGCG 57.835 47.619 0.00 0.00 46.26 5.52
2351 2853 3.057033 ACAGAATGCCAATTCAGTCTTGC 60.057 43.478 1.64 0.00 44.05 4.01
2352 2854 4.482386 CACAGAATGCCAATTCAGTCTTG 58.518 43.478 1.64 0.00 44.05 3.02
2369 2871 5.068723 GCTAGGTACCTTATAACAGCACAGA 59.931 44.000 22.11 0.00 0.00 3.41
2387 2889 0.620556 CAACCACCCATCAGCTAGGT 59.379 55.000 0.00 0.00 0.00 3.08
2392 2894 1.228552 ACACCAACCACCCATCAGC 60.229 57.895 0.00 0.00 0.00 4.26
2393 2895 1.526575 GCACACCAACCACCCATCAG 61.527 60.000 0.00 0.00 0.00 2.90
2394 2896 1.530419 GCACACCAACCACCCATCA 60.530 57.895 0.00 0.00 0.00 3.07
2395 2897 1.526575 CTGCACACCAACCACCCATC 61.527 60.000 0.00 0.00 0.00 3.51
2399 2901 2.123897 ACCTGCACACCAACCACC 60.124 61.111 0.00 0.00 0.00 4.61
2425 2928 0.967380 AATCCCTTGCCGAAGCCAAG 60.967 55.000 0.00 0.00 38.69 3.61
2476 2979 2.609610 ACATACCCAGGGCGGTGT 60.610 61.111 4.91 5.20 36.56 4.16
2515 3018 2.250939 TGTGGCGGTGAAAAGCTCG 61.251 57.895 0.00 0.00 0.00 5.03
2599 3102 0.962356 GTCCACACTGCTGGAATGGG 60.962 60.000 9.23 0.00 42.22 4.00
2694 3197 9.425248 AAAATCATTCCACATATGACCACTTAT 57.575 29.630 10.38 0.00 35.03 1.73
2734 3237 2.258013 TTAGGCACACACGGCAAGC 61.258 57.895 0.00 0.00 0.00 4.01
2741 3244 5.348164 ACAAAATTCAAGTTAGGCACACAC 58.652 37.500 0.00 0.00 0.00 3.82
2743 3246 6.902224 AAACAAAATTCAAGTTAGGCACAC 57.098 33.333 0.00 0.00 0.00 3.82
2758 3261 8.076178 CAGATCGTACTGAAAGGAAAACAAAAT 58.924 33.333 5.90 0.00 39.94 1.82
2883 3443 2.421399 GCAGCTCAAATGCTCCCCC 61.421 63.158 0.00 0.00 41.98 5.40
2927 3493 5.106197 TGTGAGGAACAATTCATATGCACAC 60.106 40.000 0.00 0.00 35.24 3.82
2928 3494 5.008980 TGTGAGGAACAATTCATATGCACA 58.991 37.500 0.00 0.00 35.24 4.57
2929 3495 5.565592 TGTGAGGAACAATTCATATGCAC 57.434 39.130 0.00 0.00 35.24 4.57
3101 3668 6.432162 AGAGATTTATTACCTCGTATACGCCA 59.568 38.462 20.42 3.38 39.60 5.69
3123 3690 7.280428 TCAGTTCAGTTTATACCGAGACTAGAG 59.720 40.741 0.00 0.00 0.00 2.43
3129 3696 5.337009 GGGTTCAGTTCAGTTTATACCGAGA 60.337 44.000 0.00 0.00 0.00 4.04
3152 3719 3.065371 GGCATTCAGGAAACAGATAACGG 59.935 47.826 0.00 0.00 0.00 4.44
3153 3720 3.941483 AGGCATTCAGGAAACAGATAACG 59.059 43.478 0.00 0.00 0.00 3.18
3171 3738 0.466007 TGCAAAGCTCAGTTCAGGCA 60.466 50.000 0.00 0.00 0.00 4.75
3172 3739 0.670162 TTGCAAAGCTCAGTTCAGGC 59.330 50.000 0.00 0.00 0.00 4.85
3183 3760 0.459934 TTGCCTGTGTGTTGCAAAGC 60.460 50.000 0.00 0.00 41.63 3.51
3306 3886 3.670377 GGTGTGTTGGCTTCCGGC 61.670 66.667 0.00 0.00 40.90 6.13
3312 3892 2.029073 CTCGTCGGTGTGTTGGCT 59.971 61.111 0.00 0.00 0.00 4.75
3357 3937 2.121538 CGGGATCAGAGCCGACTCA 61.122 63.158 0.35 0.00 46.09 3.41
3366 3946 4.794439 CACACGCGCGGGATCAGA 62.794 66.667 41.88 0.00 0.00 3.27
3405 3985 1.823041 GTAGTCGAGGTCCCGGGAG 60.823 68.421 27.72 13.05 0.00 4.30
3450 4030 0.455633 CTTTGCCATGCGAGAAGTGC 60.456 55.000 0.00 0.00 0.00 4.40
3459 4039 2.105528 CCGCCATCTTTGCCATGC 59.894 61.111 0.00 0.00 0.00 4.06
3478 4058 0.179094 GTTGTCGCCGGTCCATCATA 60.179 55.000 1.90 0.00 0.00 2.15
3479 4059 1.449601 GTTGTCGCCGGTCCATCAT 60.450 57.895 1.90 0.00 0.00 2.45
3539 4119 8.421249 TTCATTTCATTTCATTTCCTACCTGT 57.579 30.769 0.00 0.00 0.00 4.00
3551 4131 6.440010 TGGCCTAGGAATTTCATTTCATTTCA 59.560 34.615 14.75 0.00 0.00 2.69
3552 4132 6.877236 TGGCCTAGGAATTTCATTTCATTTC 58.123 36.000 14.75 0.00 0.00 2.17
3553 4133 6.872585 TGGCCTAGGAATTTCATTTCATTT 57.127 33.333 14.75 0.00 0.00 2.32
3554 4134 6.384886 ACATGGCCTAGGAATTTCATTTCATT 59.615 34.615 14.75 0.00 0.00 2.57
3555 4135 5.901276 ACATGGCCTAGGAATTTCATTTCAT 59.099 36.000 14.75 0.00 0.00 2.57
3556 4136 5.271598 ACATGGCCTAGGAATTTCATTTCA 58.728 37.500 14.75 0.00 0.00 2.69
3557 4137 5.859205 ACATGGCCTAGGAATTTCATTTC 57.141 39.130 14.75 0.00 0.00 2.17
3558 4138 9.028284 CATATACATGGCCTAGGAATTTCATTT 57.972 33.333 14.75 3.59 0.00 2.32
3559 4139 8.172741 ACATATACATGGCCTAGGAATTTCATT 58.827 33.333 14.75 0.00 36.39 2.57
3560 4140 7.702785 ACATATACATGGCCTAGGAATTTCAT 58.297 34.615 14.75 4.68 36.39 2.57
3602 4182 5.824097 TGTTTTCTCCCTTTACACAGGTAAC 59.176 40.000 0.00 0.00 39.14 2.50
3624 4204 6.012858 TCCCTACTGGATTGATTACTGTTTGT 60.013 38.462 0.00 0.00 38.61 2.83
3749 4345 3.610040 AAACGACTGCTCATCACCATA 57.390 42.857 0.00 0.00 0.00 2.74
3765 4365 4.441087 GCTGCTAACCAGAAAAGAAAAACG 59.559 41.667 0.00 0.00 44.64 3.60
3767 4367 4.097286 ACGCTGCTAACCAGAAAAGAAAAA 59.903 37.500 0.00 0.00 44.64 1.94
3789 4389 6.016276 CCAGGGTACAATCAGCCAATAAATAC 60.016 42.308 0.00 0.00 38.60 1.89
3813 4413 4.631131 AGCTTTATTCAACAAAAGTGGCC 58.369 39.130 0.00 0.00 35.56 5.36
3814 4414 4.686091 GGAGCTTTATTCAACAAAAGTGGC 59.314 41.667 0.00 0.00 35.56 5.01
3904 4504 2.372264 AGGTGCAGCCACATTATTCAG 58.628 47.619 13.29 0.00 43.88 3.02
3905 4505 2.512692 AGGTGCAGCCACATTATTCA 57.487 45.000 13.29 0.00 43.88 2.57
4143 4942 5.980116 AGAGACTAAAACATCGATCGATTGG 59.020 40.000 27.45 19.24 31.62 3.16
4212 5011 5.120208 CCACCATAGTTCAGAGTTACAAACG 59.880 44.000 0.00 0.00 36.23 3.60
4223 5022 7.657336 ACAAACAATAAACCACCATAGTTCAG 58.343 34.615 0.00 0.00 0.00 3.02
4230 5029 8.956426 CAGTAGATACAAACAATAAACCACCAT 58.044 33.333 0.00 0.00 0.00 3.55
4240 5039 8.301720 TCGTCTGTTACAGTAGATACAAACAAT 58.698 33.333 12.41 0.00 32.61 2.71
4251 5050 6.061231 TGATAGCATCGTCTGTTACAGTAG 57.939 41.667 12.41 7.74 32.61 2.57
4254 5053 5.523369 TCATGATAGCATCGTCTGTTACAG 58.477 41.667 5.94 5.94 30.68 2.74
4369 5170 5.996669 TTGTAGCAATATCAGCATCAGTG 57.003 39.130 3.33 0.00 0.00 3.66
4391 5192 6.189677 TGTTCTTTCTCAACGTGAACAAAT 57.810 33.333 11.56 0.00 42.32 2.32
4394 5195 5.811399 AATGTTCTTTCTCAACGTGAACA 57.189 34.783 15.07 15.07 46.82 3.18
4456 5257 0.729140 GTGTTTGGCCGATTTCGCTG 60.729 55.000 0.00 0.00 38.18 5.18
4458 5259 0.109319 ATGTGTTTGGCCGATTTCGC 60.109 50.000 0.00 0.00 38.18 4.70
4459 5260 1.790123 CGATGTGTTTGGCCGATTTCG 60.790 52.381 0.00 0.00 39.44 3.46
4473 5274 2.809174 TGCGCTTCCGACGATGTG 60.809 61.111 9.73 0.00 36.29 3.21
4475 5276 2.809174 TGTGCGCTTCCGACGATG 60.809 61.111 9.73 0.00 36.29 3.84
4479 5280 1.897398 AAATCGTGTGCGCTTCCGAC 61.897 55.000 9.73 0.00 38.14 4.79
4482 5283 0.040425 AACAAATCGTGTGCGCTTCC 60.040 50.000 9.73 0.00 40.60 3.46
4498 5299 2.169561 TGTGTAGGTGCACTCTGAAACA 59.830 45.455 17.98 13.84 39.89 2.83
4502 5303 3.070878 TGAATTGTGTAGGTGCACTCTGA 59.929 43.478 17.98 1.31 39.89 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.