Multiple sequence alignment - TraesCS4A01G494300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G494300 chr4A 100.000 4172 0 0 1 4172 742273026 742277197 0.000000e+00 7705.0
1 TraesCS4A01G494300 chr4A 83.623 1551 213 30 1951 3474 733960634 733962170 0.000000e+00 1419.0
2 TraesCS4A01G494300 chr4A 85.380 1368 122 28 529 1878 733930963 733932270 0.000000e+00 1347.0
3 TraesCS4A01G494300 chr4A 88.063 1022 101 16 1951 2966 739818461 739817455 0.000000e+00 1192.0
4 TraesCS4A01G494300 chr4A 84.567 1121 140 14 752 1853 740065525 740066631 0.000000e+00 1081.0
5 TraesCS4A01G494300 chr4A 84.035 1021 119 30 1957 2958 740891265 740892260 0.000000e+00 942.0
6 TraesCS4A01G494300 chr4A 80.000 1305 210 36 1957 3252 740071414 740072676 0.000000e+00 917.0
7 TraesCS4A01G494300 chr4A 83.128 972 121 19 928 1878 739828888 739827939 0.000000e+00 846.0
8 TraesCS4A01G494300 chr4A 82.526 950 123 15 985 1900 739802755 739801815 0.000000e+00 795.0
9 TraesCS4A01G494300 chr4A 88.737 586 63 1 985 1567 740872978 740873563 0.000000e+00 713.0
10 TraesCS4A01G494300 chr4A 80.922 933 127 25 990 1886 741971373 741972290 0.000000e+00 689.0
11 TraesCS4A01G494300 chr4A 88.112 572 50 10 212 778 739829596 739829038 0.000000e+00 664.0
12 TraesCS4A01G494300 chr4A 90.457 503 44 2 2977 3475 739817408 739816906 0.000000e+00 660.0
13 TraesCS4A01G494300 chr4A 94.903 412 19 2 3762 4172 739816914 739816504 0.000000e+00 643.0
14 TraesCS4A01G494300 chr4A 89.105 514 45 8 206 709 740065015 740065527 2.740000e-176 628.0
15 TraesCS4A01G494300 chr4A 85.714 497 67 4 2982 3474 740892317 740892813 4.780000e-144 521.0
16 TraesCS4A01G494300 chr4A 79.732 597 84 18 1570 2162 741472433 741471870 8.400000e-107 398.0
17 TraesCS4A01G494300 chr4A 84.500 400 57 4 3773 4168 740892817 740893215 1.410000e-104 390.0
18 TraesCS4A01G494300 chr4A 84.942 259 32 4 206 463 733930703 733930955 5.350000e-64 255.0
19 TraesCS4A01G494300 chr4A 75.728 412 79 13 3764 4169 741973658 741974054 1.980000e-43 187.0
20 TraesCS4A01G494300 chr4A 82.203 118 21 0 3357 3474 740072859 740072976 7.380000e-18 102.0
21 TraesCS4A01G494300 chr4A 81.481 108 18 2 812 918 739802896 739802790 2.070000e-13 87.9
22 TraesCS4A01G494300 chr4A 100.000 47 0 0 101 147 739829739 739829693 2.070000e-13 87.9
23 TraesCS4A01G494300 chr4A 77.885 104 13 7 685 779 740872678 740872780 5.830000e-04 56.5
24 TraesCS4A01G494300 chr4A 100.000 28 0 0 144 171 739829719 739829692 8.000000e-03 52.8
25 TraesCS4A01G494300 chr7A 89.197 1333 104 20 2179 3474 3009123 3010452 0.000000e+00 1628.0
26 TraesCS4A01G494300 chr7A 85.596 1569 182 30 1425 2977 3574067 3572527 0.000000e+00 1605.0
27 TraesCS4A01G494300 chr7A 89.007 1228 99 19 2279 3474 3630146 3628923 0.000000e+00 1487.0
28 TraesCS4A01G494300 chr7A 82.941 1190 165 24 985 2158 3324663 3323496 0.000000e+00 1038.0
29 TraesCS4A01G494300 chr7A 89.133 773 78 4 2202 2970 3323422 3322652 0.000000e+00 957.0
30 TraesCS4A01G494300 chr7A 85.545 927 112 13 989 1896 2859953 2860876 0.000000e+00 950.0
31 TraesCS4A01G494300 chr7A 84.979 932 113 9 989 1900 2570634 2571558 0.000000e+00 920.0
32 TraesCS4A01G494300 chr7A 86.139 606 51 13 2894 3468 2861675 2862278 1.270000e-174 623.0
33 TraesCS4A01G494300 chr7A 86.133 512 64 4 2970 3474 3322619 3322108 2.840000e-151 545.0
34 TraesCS4A01G494300 chr7A 90.315 413 39 1 2969 3380 3572502 3572090 1.320000e-149 540.0
35 TraesCS4A01G494300 chr7A 90.000 410 34 5 3762 4169 2580097 2580501 1.330000e-144 523.0
36 TraesCS4A01G494300 chr7A 88.862 413 39 5 3762 4172 3628930 3628523 6.230000e-138 501.0
37 TraesCS4A01G494300 chr7A 88.780 410 39 5 3762 4169 3010445 3010849 2.900000e-136 496.0
38 TraesCS4A01G494300 chr7A 87.348 411 49 1 3762 4172 3322115 3321708 6.320000e-128 468.0
39 TraesCS4A01G494300 chr7A 80.435 598 85 18 1570 2164 3008480 3009048 1.070000e-115 427.0
40 TraesCS4A01G494300 chrUn 81.904 2006 284 48 990 2958 23779966 23781929 0.000000e+00 1620.0
41 TraesCS4A01G494300 chrUn 81.904 2006 284 48 990 2958 291094423 291096386 0.000000e+00 1620.0
42 TraesCS4A01G494300 chr7D 86.293 1036 104 18 1957 2970 3754367 3755386 0.000000e+00 1092.0
43 TraesCS4A01G494300 chr7D 85.177 931 112 10 989 1900 3740582 3741505 0.000000e+00 931.0
44 TraesCS4A01G494300 chr7D 89.820 668 59 8 2812 3474 3769842 3769179 0.000000e+00 848.0
45 TraesCS4A01G494300 chr7D 79.838 1235 189 40 1955 3179 3432878 3431694 0.000000e+00 846.0
46 TraesCS4A01G494300 chr7D 91.950 559 45 0 2262 2820 3778441 3777883 0.000000e+00 784.0
47 TraesCS4A01G494300 chr7D 89.216 510 51 3 2969 3474 3755418 3755927 5.880000e-178 634.0
48 TraesCS4A01G494300 chr7D 93.399 409 25 2 3765 4172 3769183 3768776 4.610000e-169 604.0
49 TraesCS4A01G494300 chr7D 87.105 411 50 3 3762 4169 3755920 3756330 2.940000e-126 462.0
50 TraesCS4A01G494300 chr7D 100.000 29 0 0 685 713 3435380 3435352 2.000000e-03 54.7
51 TraesCS4A01G494300 chr6D 96.711 304 10 0 3467 3770 36067002 36066699 1.340000e-139 507.0
52 TraesCS4A01G494300 chr3B 97.603 292 7 0 3470 3761 4310584 4310875 6.230000e-138 501.0
53 TraesCS4A01G494300 chr3B 97.241 290 8 0 3474 3763 22786170 22785881 3.750000e-135 492.0
54 TraesCS4A01G494300 chr5A 97.924 289 5 1 3476 3763 512621809 512622097 2.240000e-137 499.0
55 TraesCS4A01G494300 chr7B 97.586 290 7 0 3475 3764 216345601 216345890 8.050000e-137 497.0
56 TraesCS4A01G494300 chr2B 97.586 290 7 0 3474 3763 685568975 685568686 8.050000e-137 497.0
57 TraesCS4A01G494300 chr2B 96.918 292 8 1 3470 3761 71992825 71993115 4.850000e-134 488.0
58 TraesCS4A01G494300 chr6A 95.752 306 13 0 3465 3770 575465715 575466020 1.040000e-135 494.0
59 TraesCS4A01G494300 chr6A 97.241 290 7 1 3474 3763 4957561 4957849 1.350000e-134 490.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G494300 chr4A 742273026 742277197 4171 False 7705.000000 7705 100.000000 1 4172 1 chr4A.!!$F2 4171
1 TraesCS4A01G494300 chr4A 733960634 733962170 1536 False 1419.000000 1419 83.623000 1951 3474 1 chr4A.!!$F1 1523
2 TraesCS4A01G494300 chr4A 740065015 740066631 1616 False 854.500000 1081 86.836000 206 1853 2 chr4A.!!$F4 1647
3 TraesCS4A01G494300 chr4A 739816504 739818461 1957 True 831.666667 1192 91.141000 1951 4172 3 chr4A.!!$R3 2221
4 TraesCS4A01G494300 chr4A 733930703 733932270 1567 False 801.000000 1347 85.161000 206 1878 2 chr4A.!!$F3 1672
5 TraesCS4A01G494300 chr4A 740891265 740893215 1950 False 617.666667 942 84.749667 1957 4168 3 chr4A.!!$F7 2211
6 TraesCS4A01G494300 chr4A 740071414 740072976 1562 False 509.500000 917 81.101500 1957 3474 2 chr4A.!!$F5 1517
7 TraesCS4A01G494300 chr4A 739801815 739802896 1081 True 441.450000 795 82.003500 812 1900 2 chr4A.!!$R2 1088
8 TraesCS4A01G494300 chr4A 741971373 741974054 2681 False 438.000000 689 78.325000 990 4169 2 chr4A.!!$F8 3179
9 TraesCS4A01G494300 chr4A 739827939 739829739 1800 True 412.675000 846 92.810000 101 1878 4 chr4A.!!$R4 1777
10 TraesCS4A01G494300 chr4A 741471870 741472433 563 True 398.000000 398 79.732000 1570 2162 1 chr4A.!!$R1 592
11 TraesCS4A01G494300 chr4A 740872678 740873563 885 False 384.750000 713 83.311000 685 1567 2 chr4A.!!$F6 882
12 TraesCS4A01G494300 chr7A 3572090 3574067 1977 True 1072.500000 1605 87.955500 1425 3380 2 chr7A.!!$R2 1955
13 TraesCS4A01G494300 chr7A 3628523 3630146 1623 True 994.000000 1487 88.934500 2279 4172 2 chr7A.!!$R3 1893
14 TraesCS4A01G494300 chr7A 2570634 2571558 924 False 920.000000 920 84.979000 989 1900 1 chr7A.!!$F1 911
15 TraesCS4A01G494300 chr7A 3008480 3010849 2369 False 850.333333 1628 86.137333 1570 4169 3 chr7A.!!$F4 2599
16 TraesCS4A01G494300 chr7A 2859953 2862278 2325 False 786.500000 950 85.842000 989 3468 2 chr7A.!!$F3 2479
17 TraesCS4A01G494300 chr7A 3321708 3324663 2955 True 752.000000 1038 86.388750 985 4172 4 chr7A.!!$R1 3187
18 TraesCS4A01G494300 chrUn 23779966 23781929 1963 False 1620.000000 1620 81.904000 990 2958 1 chrUn.!!$F1 1968
19 TraesCS4A01G494300 chrUn 291094423 291096386 1963 False 1620.000000 1620 81.904000 990 2958 1 chrUn.!!$F2 1968
20 TraesCS4A01G494300 chr7D 3740582 3741505 923 False 931.000000 931 85.177000 989 1900 1 chr7D.!!$F1 911
21 TraesCS4A01G494300 chr7D 3777883 3778441 558 True 784.000000 784 91.950000 2262 2820 1 chr7D.!!$R1 558
22 TraesCS4A01G494300 chr7D 3754367 3756330 1963 False 729.333333 1092 87.538000 1957 4169 3 chr7D.!!$F2 2212
23 TraesCS4A01G494300 chr7D 3768776 3769842 1066 True 726.000000 848 91.609500 2812 4172 2 chr7D.!!$R3 1360
24 TraesCS4A01G494300 chr7D 3431694 3435380 3686 True 450.350000 846 89.919000 685 3179 2 chr7D.!!$R2 2494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.041576 GCTTTTGCTGCTTTGCTTGC 60.042 50.0 0.00 0.0 43.35 4.01 F
65 66 0.099968 GCTGCATGCATGATTGACGT 59.900 50.0 30.64 0.0 42.31 4.34 F
1640 1835 0.173255 CTTGCCCGCCTTGTTTATGG 59.827 55.0 0.00 0.0 0.00 2.74 F
1646 1841 0.391927 CGCCTTGTTTATGGGGACGA 60.392 55.0 0.00 0.0 36.51 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1568 1751 0.179092 GGATGCCATTTTGAGCTGCC 60.179 55.000 0.00 0.0 0.0 4.85 R
1813 2008 0.318107 CTTGCGCACCTTTTGTCCTG 60.318 55.000 11.12 0.0 0.0 3.86 R
2972 4859 0.035439 TCCAAGGGCCTCGAATTCAC 60.035 55.000 6.46 0.0 0.0 3.18 R
3506 5521 1.069022 CAGTGATTTCGGTTGGTGCTG 60.069 52.381 0.00 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.986882 AGTAAAGTTGGCAAGCTGCT 58.013 45.000 0.00 0.00 44.28 4.24
20 21 1.610522 AGTAAAGTTGGCAAGCTGCTG 59.389 47.619 1.35 0.00 44.28 4.41
21 22 0.961019 TAAAGTTGGCAAGCTGCTGG 59.039 50.000 1.35 0.00 44.28 4.85
22 23 1.751349 AAAGTTGGCAAGCTGCTGGG 61.751 55.000 1.35 0.00 44.28 4.45
23 24 4.368543 GTTGGCAAGCTGCTGGGC 62.369 66.667 22.64 22.64 44.28 5.36
24 25 4.608774 TTGGCAAGCTGCTGGGCT 62.609 61.111 28.08 0.00 44.28 5.19
30 31 2.203596 AGCTGCTGGGCTTTTGCT 60.204 55.556 0.00 0.00 46.54 3.91
31 32 1.835712 AGCTGCTGGGCTTTTGCTT 60.836 52.632 0.00 0.00 46.54 3.91
32 33 1.070275 GCTGCTGGGCTTTTGCTTT 59.930 52.632 0.00 0.00 46.54 3.51
33 34 0.533531 GCTGCTGGGCTTTTGCTTTT 60.534 50.000 0.00 0.00 46.54 2.27
34 35 1.223187 CTGCTGGGCTTTTGCTTTTG 58.777 50.000 0.00 0.00 46.54 2.44
35 36 0.814812 TGCTGGGCTTTTGCTTTTGC 60.815 50.000 0.00 0.00 46.54 3.68
47 48 0.041576 GCTTTTGCTGCTTTGCTTGC 60.042 50.000 0.00 0.00 43.35 4.01
48 49 1.578583 CTTTTGCTGCTTTGCTTGCT 58.421 45.000 0.00 0.00 32.36 3.91
49 50 1.260561 CTTTTGCTGCTTTGCTTGCTG 59.739 47.619 0.00 0.00 32.36 4.41
64 65 2.868020 GCTGCATGCATGATTGACG 58.132 52.632 30.64 7.95 42.31 4.35
65 66 0.099968 GCTGCATGCATGATTGACGT 59.900 50.000 30.64 0.00 42.31 4.34
66 67 1.858798 GCTGCATGCATGATTGACGTC 60.859 52.381 30.64 9.11 42.31 4.34
67 68 1.399089 CTGCATGCATGATTGACGTCA 59.601 47.619 30.64 15.76 0.00 4.35
68 69 1.130938 TGCATGCATGATTGACGTCAC 59.869 47.619 30.64 8.62 0.00 3.67
69 70 1.130938 GCATGCATGATTGACGTCACA 59.869 47.619 30.64 14.73 0.00 3.58
70 71 2.223409 GCATGCATGATTGACGTCACAT 60.223 45.455 30.64 16.47 0.00 3.21
71 72 3.732774 GCATGCATGATTGACGTCACATT 60.733 43.478 30.64 6.11 0.00 2.71
72 73 3.474693 TGCATGATTGACGTCACATTG 57.525 42.857 19.90 14.23 0.00 2.82
73 74 3.072944 TGCATGATTGACGTCACATTGA 58.927 40.909 19.90 3.02 0.00 2.57
74 75 3.125658 TGCATGATTGACGTCACATTGAG 59.874 43.478 19.90 8.87 0.00 3.02
75 76 3.371898 GCATGATTGACGTCACATTGAGA 59.628 43.478 19.90 1.27 0.00 3.27
76 77 4.142838 GCATGATTGACGTCACATTGAGAA 60.143 41.667 19.90 0.39 0.00 2.87
77 78 5.557388 CATGATTGACGTCACATTGAGAAG 58.443 41.667 19.90 2.94 0.00 2.85
78 79 3.996363 TGATTGACGTCACATTGAGAAGG 59.004 43.478 19.90 0.00 0.00 3.46
79 80 2.455674 TGACGTCACATTGAGAAGGG 57.544 50.000 15.76 0.00 0.00 3.95
80 81 1.079503 GACGTCACATTGAGAAGGGC 58.920 55.000 11.55 0.00 0.00 5.19
81 82 0.687354 ACGTCACATTGAGAAGGGCT 59.313 50.000 2.63 0.00 0.00 5.19
82 83 1.081892 CGTCACATTGAGAAGGGCTG 58.918 55.000 0.00 0.00 0.00 4.85
83 84 0.807496 GTCACATTGAGAAGGGCTGC 59.193 55.000 0.00 0.00 0.00 5.25
84 85 0.694771 TCACATTGAGAAGGGCTGCT 59.305 50.000 0.00 0.00 0.00 4.24
85 86 1.074405 TCACATTGAGAAGGGCTGCTT 59.926 47.619 0.00 0.00 0.00 3.91
86 87 1.891150 CACATTGAGAAGGGCTGCTTT 59.109 47.619 0.00 0.00 0.00 3.51
87 88 2.298163 CACATTGAGAAGGGCTGCTTTT 59.702 45.455 0.00 0.00 0.00 2.27
88 89 2.298163 ACATTGAGAAGGGCTGCTTTTG 59.702 45.455 0.00 0.00 0.00 2.44
147 148 3.267812 TGAGAAGGGAAGCATCATTCCTT 59.732 43.478 5.54 0.64 46.74 3.36
149 150 4.021916 AGAAGGGAAGCATCATTCCTTTG 58.978 43.478 7.49 0.00 45.64 2.77
150 151 3.744940 AGGGAAGCATCATTCCTTTGA 57.255 42.857 5.54 0.00 46.74 2.69
151 152 3.629087 AGGGAAGCATCATTCCTTTGAG 58.371 45.455 5.54 0.00 46.74 3.02
153 154 4.019174 GGGAAGCATCATTCCTTTGAGAA 58.981 43.478 5.54 0.00 46.74 2.87
168 169 3.287867 TGAGAAGGGAAGCATCATTCC 57.712 47.619 0.00 0.00 46.82 3.01
169 170 2.848694 TGAGAAGGGAAGCATCATTCCT 59.151 45.455 5.54 0.00 46.74 3.36
170 171 3.212685 GAGAAGGGAAGCATCATTCCTG 58.787 50.000 5.54 0.00 46.74 3.86
204 206 3.944422 GGTGACGCGTTATTGAATCAT 57.056 42.857 15.53 0.00 0.00 2.45
205 207 4.273005 GGTGACGCGTTATTGAATCATT 57.727 40.909 15.53 0.00 0.00 2.57
206 208 4.658071 GGTGACGCGTTATTGAATCATTT 58.342 39.130 15.53 0.00 0.00 2.32
207 209 4.495472 GGTGACGCGTTATTGAATCATTTG 59.505 41.667 15.53 0.00 0.00 2.32
208 210 5.320723 GTGACGCGTTATTGAATCATTTGA 58.679 37.500 15.53 0.00 0.00 2.69
209 211 5.449113 GTGACGCGTTATTGAATCATTTGAG 59.551 40.000 15.53 0.00 0.00 3.02
210 212 4.908736 ACGCGTTATTGAATCATTTGAGG 58.091 39.130 5.58 0.00 0.00 3.86
250 283 7.359097 GCAACATTTTTCATTAGCGTCATTTCA 60.359 33.333 0.00 0.00 0.00 2.69
254 287 7.795431 TTTTTCATTAGCGTCATTTCATCAC 57.205 32.000 0.00 0.00 0.00 3.06
292 325 6.540189 ACATTTTCTCTGGATTATGGAAGACG 59.460 38.462 0.00 0.00 0.00 4.18
294 327 2.365617 TCTCTGGATTATGGAAGACGCC 59.634 50.000 0.00 0.00 0.00 5.68
302 335 5.763204 GGATTATGGAAGACGCCAAAGAATA 59.237 40.000 0.00 0.00 42.16 1.75
304 337 3.695830 TGGAAGACGCCAAAGAATAGT 57.304 42.857 0.00 0.00 34.31 2.12
311 344 5.109903 AGACGCCAAAGAATAGTACACATC 58.890 41.667 0.00 0.00 0.00 3.06
331 364 8.275632 ACACATCATAAATTCATCGTTACATCG 58.724 33.333 0.00 0.00 0.00 3.84
332 365 7.266966 CACATCATAAATTCATCGTTACATCGC 59.733 37.037 0.00 0.00 0.00 4.58
334 367 6.876804 TCATAAATTCATCGTTACATCGCTG 58.123 36.000 0.00 0.00 0.00 5.18
366 400 4.612033 GCAAAATGGCAAGCTTGAAATGAC 60.612 41.667 30.39 10.67 0.00 3.06
374 408 3.885484 AGCTTGAAATGACAGTGTTCG 57.115 42.857 0.00 0.00 0.00 3.95
375 409 2.031682 AGCTTGAAATGACAGTGTTCGC 60.032 45.455 0.00 0.00 0.00 4.70
417 451 2.179427 GGGAAGGGTGATTCTTTTGGG 58.821 52.381 0.00 0.00 0.00 4.12
433 472 1.449070 GGGAAAGAACCGGGTAGCG 60.449 63.158 6.32 0.00 0.00 4.26
443 482 1.964373 CGGGTAGCGTTGCTGGTTT 60.964 57.895 0.70 0.00 40.10 3.27
459 498 2.879826 GGTTTTCCAAGGAATGCATCG 58.120 47.619 0.00 0.00 40.31 3.84
463 502 0.461870 TCCAAGGAATGCATCGACCG 60.462 55.000 0.00 0.00 0.00 4.79
488 531 6.944096 ACACTCTATTCTTGGGGTAAGTAAC 58.056 40.000 0.00 0.00 37.65 2.50
499 542 5.907421 TGGGGTAAGTAACTTAAGGAGAGA 58.093 41.667 7.53 0.00 0.00 3.10
503 546 7.125356 GGGGTAAGTAACTTAAGGAGAGAATCA 59.875 40.741 7.53 0.00 37.82 2.57
504 547 8.706521 GGGTAAGTAACTTAAGGAGAGAATCAT 58.293 37.037 7.53 0.00 37.82 2.45
505 548 9.535878 GGTAAGTAACTTAAGGAGAGAATCATG 57.464 37.037 7.53 0.00 37.82 3.07
641 689 3.222173 TGTGTTGGGTTATCAGCTTGT 57.778 42.857 0.00 0.00 0.00 3.16
713 761 9.467258 TCATTAGAAAAATCAAAAGAAGCACAG 57.533 29.630 0.00 0.00 0.00 3.66
947 1083 5.837437 TCGACACACATGCACACATATATA 58.163 37.500 0.00 0.00 33.67 0.86
980 1116 1.153489 CGCTCCAGTGCATACAGCT 60.153 57.895 0.00 0.00 45.94 4.24
1077 1213 2.914097 GGTGCTTTGCTGGGCAGT 60.914 61.111 0.00 0.00 40.61 4.40
1147 1283 2.302733 TCCAAGCTCAAGTCTATGCACA 59.697 45.455 0.00 0.00 0.00 4.57
1206 1342 2.159382 GCGGAATCCAAGGACTTGAAA 58.841 47.619 13.35 2.11 42.93 2.69
1221 1357 0.951558 TGAAAAAGGAAGCGCTGGAC 59.048 50.000 12.58 4.06 0.00 4.02
1233 1369 4.477975 CTGGACCTCGCCGACGAC 62.478 72.222 0.00 0.00 45.12 4.34
1244 1380 2.799502 CGACGACATGCACGACGT 60.800 61.111 10.41 10.41 41.70 4.34
1296 1432 1.518903 GCCGCAGAAGCAAGAACCTT 61.519 55.000 0.00 0.00 42.27 3.50
1320 1456 1.811359 GTGCAGAGCAAGATCAAAGCT 59.189 47.619 6.31 6.31 41.47 3.74
1362 1504 3.462021 GGCAAGAGTAGATGATGTGTCC 58.538 50.000 0.00 0.00 0.00 4.02
1392 1534 1.569479 GCAGCAAGTGGAAGTCGGAC 61.569 60.000 0.00 0.00 0.00 4.79
1398 1540 2.802816 CAAGTGGAAGTCGGACAAGAAG 59.197 50.000 11.27 0.00 0.00 2.85
1439 1582 5.183904 TCTCCAGCTTATTTTCAAGAAAGGC 59.816 40.000 0.00 1.03 0.00 4.35
1475 1634 2.348998 CAGCAAACCGCCTCCTCT 59.651 61.111 0.00 0.00 44.04 3.69
1522 1681 2.420022 GCATCAAAGCTCGTTGGTATGT 59.580 45.455 0.00 0.00 0.00 2.29
1568 1751 5.109903 CAAATACCTGGTAGGAGAAGAACG 58.890 45.833 12.78 0.00 37.67 3.95
1607 1790 1.269448 CATTATTGGTATGGCCGGCAC 59.731 52.381 30.85 18.30 41.21 5.01
1640 1835 0.173255 CTTGCCCGCCTTGTTTATGG 59.827 55.000 0.00 0.00 0.00 2.74
1645 1840 1.373590 CCGCCTTGTTTATGGGGACG 61.374 60.000 0.00 0.00 36.51 4.79
1646 1841 0.391927 CGCCTTGTTTATGGGGACGA 60.392 55.000 0.00 0.00 36.51 4.20
1647 1842 1.379527 GCCTTGTTTATGGGGACGAG 58.620 55.000 0.00 0.00 0.00 4.18
1648 1843 2.017113 GCCTTGTTTATGGGGACGAGG 61.017 57.143 5.58 5.58 46.13 4.63
1649 1844 1.379527 CTTGTTTATGGGGACGAGGC 58.620 55.000 0.00 0.00 0.00 4.70
1650 1845 0.693622 TTGTTTATGGGGACGAGGCA 59.306 50.000 0.00 0.00 0.00 4.75
1774 1969 2.501602 GCTGGCAACCAAGCAAGGT 61.502 57.895 0.00 0.00 45.91 3.50
1813 2008 5.245531 TCCATGCCATATCGAATTTCCTAC 58.754 41.667 0.00 0.00 0.00 3.18
1896 2110 0.779997 ACTGTGAGGGCCAGGATTTT 59.220 50.000 6.18 0.00 34.16 1.82
1911 2140 7.105588 GCCAGGATTTTAAAATGGTGATTTCT 58.894 34.615 17.98 0.00 30.02 2.52
1912 2141 7.607607 GCCAGGATTTTAAAATGGTGATTTCTT 59.392 33.333 17.98 0.00 30.02 2.52
2070 3566 7.730332 AGGTCTTTTCCAGAAAATAATCTTGGT 59.270 33.333 6.05 0.00 39.29 3.67
2108 3837 5.183331 TCACAACTCGTAATGCTTCTCTACT 59.817 40.000 0.00 0.00 0.00 2.57
2109 3838 6.373495 TCACAACTCGTAATGCTTCTCTACTA 59.627 38.462 0.00 0.00 0.00 1.82
2110 3839 6.469595 CACAACTCGTAATGCTTCTCTACTAC 59.530 42.308 0.00 0.00 0.00 2.73
2140 3869 3.384146 TGATTTGGAAAACAGCAAGCTCA 59.616 39.130 0.00 0.00 0.00 4.26
2142 3871 4.405116 TTTGGAAAACAGCAAGCTCAAT 57.595 36.364 0.00 0.00 0.00 2.57
2199 4030 3.567478 AAATGGCTCTATGGACCTGAC 57.433 47.619 0.00 0.00 0.00 3.51
2237 4098 1.211212 TCAGATGAAGCCTGACATGGG 59.789 52.381 0.00 0.00 35.89 4.00
2250 4111 2.224769 TGACATGGGTGGAGAAGGTTTC 60.225 50.000 0.00 0.00 0.00 2.78
2328 4189 3.181514 GCATGTTTTCAGCAATGGCAATC 60.182 43.478 0.00 0.00 44.61 2.67
2344 4208 1.798223 CAATCGTCCGAGAGCAACAAA 59.202 47.619 0.00 0.00 0.00 2.83
2345 4209 1.714794 ATCGTCCGAGAGCAACAAAG 58.285 50.000 0.00 0.00 0.00 2.77
2423 4293 4.656041 CTTAAGCAAAGCGGAATTCAGAG 58.344 43.478 9.97 0.27 0.00 3.35
2521 4391 2.869801 TGCTTGTTGTACTGCAGTGTAC 59.130 45.455 29.57 20.24 42.10 2.90
2577 4447 2.286872 GTCATGAGATGGGTTGCTGAG 58.713 52.381 0.00 0.00 0.00 3.35
2633 4503 2.013400 TGTCGAAGAGCTTTGCAACAA 58.987 42.857 0.00 0.00 36.95 2.83
2655 4525 3.146066 GGGATTTATGCTGCGTATGGAA 58.854 45.455 1.86 0.00 0.00 3.53
2742 4620 9.853555 AAATTGCGTGAAGATAATTTCATTACA 57.146 25.926 0.00 0.00 39.13 2.41
2932 4816 2.684001 TGAGAAGTTGGAACGTGTGT 57.316 45.000 0.00 0.00 0.00 3.72
3274 5279 1.674764 CTGAGCTGGACGAGGCTGAT 61.675 60.000 0.00 0.00 39.05 2.90
3279 5288 2.025767 CTGGACGAGGCTGATGGAGG 62.026 65.000 0.00 0.00 0.00 4.30
3474 5489 1.003233 CCCTGGACCTGAGTTACAACC 59.997 57.143 0.00 0.00 0.00 3.77
3475 5490 1.697432 CCTGGACCTGAGTTACAACCA 59.303 52.381 0.00 0.00 0.00 3.67
3476 5491 2.305927 CCTGGACCTGAGTTACAACCAT 59.694 50.000 0.00 0.00 0.00 3.55
3477 5492 3.338249 CTGGACCTGAGTTACAACCATG 58.662 50.000 0.00 0.00 0.00 3.66
3478 5493 2.039746 TGGACCTGAGTTACAACCATGG 59.960 50.000 11.19 11.19 0.00 3.66
3479 5494 2.039879 GGACCTGAGTTACAACCATGGT 59.960 50.000 13.00 13.00 0.00 3.55
3480 5495 3.497942 GGACCTGAGTTACAACCATGGTT 60.498 47.826 24.86 24.86 39.13 3.67
3481 5496 4.142038 GACCTGAGTTACAACCATGGTTT 58.858 43.478 27.82 19.70 36.00 3.27
3482 5497 4.542697 ACCTGAGTTACAACCATGGTTTT 58.457 39.130 27.82 23.47 36.00 2.43
3483 5498 4.583073 ACCTGAGTTACAACCATGGTTTTC 59.417 41.667 27.82 18.35 36.00 2.29
3484 5499 4.582656 CCTGAGTTACAACCATGGTTTTCA 59.417 41.667 27.82 21.28 36.00 2.69
3485 5500 5.068460 CCTGAGTTACAACCATGGTTTTCAA 59.932 40.000 27.82 17.52 36.00 2.69
3486 5501 6.239289 CCTGAGTTACAACCATGGTTTTCAAT 60.239 38.462 27.82 12.50 36.00 2.57
3487 5502 7.118496 TGAGTTACAACCATGGTTTTCAATT 57.882 32.000 27.82 16.78 36.00 2.32
3488 5503 7.560368 TGAGTTACAACCATGGTTTTCAATTT 58.440 30.769 27.82 12.95 36.00 1.82
3489 5504 7.708752 TGAGTTACAACCATGGTTTTCAATTTC 59.291 33.333 27.82 19.25 36.00 2.17
3490 5505 7.560368 AGTTACAACCATGGTTTTCAATTTCA 58.440 30.769 27.82 1.56 36.00 2.69
3491 5506 7.710475 AGTTACAACCATGGTTTTCAATTTCAG 59.290 33.333 27.82 14.23 36.00 3.02
3492 5507 5.988287 ACAACCATGGTTTTCAATTTCAGT 58.012 33.333 27.82 14.87 36.00 3.41
3493 5508 6.413892 ACAACCATGGTTTTCAATTTCAGTT 58.586 32.000 27.82 0.00 36.00 3.16
3494 5509 6.883756 ACAACCATGGTTTTCAATTTCAGTTT 59.116 30.769 27.82 0.00 36.00 2.66
3495 5510 7.065683 ACAACCATGGTTTTCAATTTCAGTTTC 59.934 33.333 27.82 0.00 36.00 2.78
3496 5511 6.648192 ACCATGGTTTTCAATTTCAGTTTCA 58.352 32.000 13.00 0.00 0.00 2.69
3497 5512 6.762661 ACCATGGTTTTCAATTTCAGTTTCAG 59.237 34.615 13.00 0.00 0.00 3.02
3498 5513 6.985645 CCATGGTTTTCAATTTCAGTTTCAGA 59.014 34.615 2.57 0.00 0.00 3.27
3499 5514 7.495279 CCATGGTTTTCAATTTCAGTTTCAGAA 59.505 33.333 2.57 0.00 0.00 3.02
3500 5515 8.881743 CATGGTTTTCAATTTCAGTTTCAGAAA 58.118 29.630 0.00 0.00 39.11 2.52
3501 5516 8.839310 TGGTTTTCAATTTCAGTTTCAGAAAA 57.161 26.923 0.00 0.00 38.36 2.29
3502 5517 9.277783 TGGTTTTCAATTTCAGTTTCAGAAAAA 57.722 25.926 0.00 0.00 38.36 1.94
3509 5524 9.429600 CAATTTCAGTTTCAGAAAAATTTCAGC 57.570 29.630 8.47 0.00 38.36 4.26
3510 5525 8.721019 ATTTCAGTTTCAGAAAAATTTCAGCA 57.279 26.923 8.47 0.00 38.36 4.41
3511 5526 7.524294 TTCAGTTTCAGAAAAATTTCAGCAC 57.476 32.000 8.47 1.84 39.61 4.40
3512 5527 6.042143 TCAGTTTCAGAAAAATTTCAGCACC 58.958 36.000 8.47 0.00 39.61 5.01
3513 5528 5.811613 CAGTTTCAGAAAAATTTCAGCACCA 59.188 36.000 8.47 0.00 39.61 4.17
3514 5529 6.313411 CAGTTTCAGAAAAATTTCAGCACCAA 59.687 34.615 8.47 0.00 39.61 3.67
3515 5530 6.313658 AGTTTCAGAAAAATTTCAGCACCAAC 59.686 34.615 8.47 3.20 39.61 3.77
3516 5531 4.692228 TCAGAAAAATTTCAGCACCAACC 58.308 39.130 8.47 0.00 39.61 3.77
3517 5532 3.490526 CAGAAAAATTTCAGCACCAACCG 59.509 43.478 8.47 0.00 39.61 4.44
3518 5533 3.383185 AGAAAAATTTCAGCACCAACCGA 59.617 39.130 8.47 0.00 39.61 4.69
3519 5534 3.810310 AAAATTTCAGCACCAACCGAA 57.190 38.095 0.00 0.00 0.00 4.30
3520 5535 3.810310 AAATTTCAGCACCAACCGAAA 57.190 38.095 0.00 0.00 0.00 3.46
3521 5536 4.335400 AAATTTCAGCACCAACCGAAAT 57.665 36.364 0.00 0.00 39.20 2.17
3522 5537 3.575965 ATTTCAGCACCAACCGAAATC 57.424 42.857 0.00 0.00 33.87 2.17
3523 5538 1.974265 TTCAGCACCAACCGAAATCA 58.026 45.000 0.00 0.00 0.00 2.57
3524 5539 1.234821 TCAGCACCAACCGAAATCAC 58.765 50.000 0.00 0.00 0.00 3.06
3525 5540 1.202758 TCAGCACCAACCGAAATCACT 60.203 47.619 0.00 0.00 0.00 3.41
3526 5541 1.069022 CAGCACCAACCGAAATCACTG 60.069 52.381 0.00 0.00 0.00 3.66
3527 5542 1.202758 AGCACCAACCGAAATCACTGA 60.203 47.619 0.00 0.00 0.00 3.41
3528 5543 1.606668 GCACCAACCGAAATCACTGAA 59.393 47.619 0.00 0.00 0.00 3.02
3529 5544 2.034053 GCACCAACCGAAATCACTGAAA 59.966 45.455 0.00 0.00 0.00 2.69
3530 5545 3.305335 GCACCAACCGAAATCACTGAAAT 60.305 43.478 0.00 0.00 0.00 2.17
3531 5546 4.795962 GCACCAACCGAAATCACTGAAATT 60.796 41.667 0.00 0.00 0.00 1.82
3532 5547 4.917415 CACCAACCGAAATCACTGAAATTC 59.083 41.667 0.00 0.00 0.00 2.17
3533 5548 4.582656 ACCAACCGAAATCACTGAAATTCA 59.417 37.500 0.00 0.00 0.00 2.57
3558 5573 7.428826 AGTGAATTTCAGTGATTTCAGTTTCC 58.571 34.615 15.60 7.22 0.00 3.13
3559 5574 7.068593 AGTGAATTTCAGTGATTTCAGTTTCCA 59.931 33.333 15.60 0.00 0.00 3.53
3560 5575 7.869429 GTGAATTTCAGTGATTTCAGTTTCCAT 59.131 33.333 15.60 0.00 0.00 3.41
3561 5576 8.423349 TGAATTTCAGTGATTTCAGTTTCCATT 58.577 29.630 12.59 0.00 0.00 3.16
3562 5577 9.264719 GAATTTCAGTGATTTCAGTTTCCATTT 57.735 29.630 10.09 0.00 0.00 2.32
3563 5578 8.822652 ATTTCAGTGATTTCAGTTTCCATTTC 57.177 30.769 0.00 0.00 0.00 2.17
3564 5579 6.957920 TCAGTGATTTCAGTTTCCATTTCA 57.042 33.333 0.00 0.00 0.00 2.69
3565 5580 6.973843 TCAGTGATTTCAGTTTCCATTTCAG 58.026 36.000 0.00 0.00 0.00 3.02
3566 5581 5.632347 CAGTGATTTCAGTTTCCATTTCAGC 59.368 40.000 0.00 0.00 0.00 4.26
3567 5582 4.925646 GTGATTTCAGTTTCCATTTCAGCC 59.074 41.667 0.00 0.00 0.00 4.85
3568 5583 4.588106 TGATTTCAGTTTCCATTTCAGCCA 59.412 37.500 0.00 0.00 0.00 4.75
3569 5584 5.070180 TGATTTCAGTTTCCATTTCAGCCAA 59.930 36.000 0.00 0.00 0.00 4.52
3570 5585 5.350504 TTTCAGTTTCCATTTCAGCCAAA 57.649 34.783 0.00 0.00 0.00 3.28
3571 5586 5.549742 TTCAGTTTCCATTTCAGCCAAAT 57.450 34.783 0.00 0.00 34.79 2.32
3580 5595 4.806640 ATTTCAGCCAAATGACCGAAAT 57.193 36.364 0.00 0.00 33.07 2.17
3581 5596 5.913137 ATTTCAGCCAAATGACCGAAATA 57.087 34.783 0.00 0.00 33.07 1.40
3582 5597 5.913137 TTTCAGCCAAATGACCGAAATAT 57.087 34.783 0.00 0.00 0.00 1.28
3583 5598 5.913137 TTCAGCCAAATGACCGAAATATT 57.087 34.783 0.00 0.00 0.00 1.28
3584 5599 5.499139 TCAGCCAAATGACCGAAATATTC 57.501 39.130 0.00 0.00 0.00 1.75
3585 5600 4.946772 TCAGCCAAATGACCGAAATATTCA 59.053 37.500 0.00 0.00 0.00 2.57
3586 5601 5.036737 CAGCCAAATGACCGAAATATTCAC 58.963 41.667 0.00 0.00 0.00 3.18
3587 5602 4.949856 AGCCAAATGACCGAAATATTCACT 59.050 37.500 0.00 0.00 0.00 3.41
3588 5603 5.418840 AGCCAAATGACCGAAATATTCACTT 59.581 36.000 0.00 0.00 0.00 3.16
3589 5604 5.516339 GCCAAATGACCGAAATATTCACTTG 59.484 40.000 0.00 0.00 0.00 3.16
3590 5605 6.624861 GCCAAATGACCGAAATATTCACTTGA 60.625 38.462 0.00 0.00 29.95 3.02
3591 5606 7.312154 CCAAATGACCGAAATATTCACTTGAA 58.688 34.615 0.00 0.00 38.56 2.69
3592 5607 7.975616 CCAAATGACCGAAATATTCACTTGAAT 59.024 33.333 9.37 9.37 45.77 2.57
3593 5608 9.357652 CAAATGACCGAAATATTCACTTGAATT 57.642 29.630 9.68 0.00 41.64 2.17
3594 5609 9.573133 AAATGACCGAAATATTCACTTGAATTC 57.427 29.630 9.68 0.00 41.64 2.17
3595 5610 7.680442 TGACCGAAATATTCACTTGAATTCA 57.320 32.000 9.68 3.38 41.64 2.57
3596 5611 8.105097 TGACCGAAATATTCACTTGAATTCAA 57.895 30.769 19.45 19.45 41.64 2.69
3597 5612 8.739039 TGACCGAAATATTCACTTGAATTCAAT 58.261 29.630 20.76 8.72 41.64 2.57
3598 5613 9.573133 GACCGAAATATTCACTTGAATTCAATT 57.427 29.630 20.76 13.01 41.64 2.32
3650 5665 9.727627 TTTTGAAAAATATTGGAATTGTTGTGC 57.272 25.926 0.00 0.00 0.00 4.57
3651 5666 8.674263 TTGAAAAATATTGGAATTGTTGTGCT 57.326 26.923 0.00 0.00 0.00 4.40
3652 5667 9.770097 TTGAAAAATATTGGAATTGTTGTGCTA 57.230 25.926 0.00 0.00 0.00 3.49
3653 5668 9.941325 TGAAAAATATTGGAATTGTTGTGCTAT 57.059 25.926 0.00 0.00 0.00 2.97
3657 5672 9.590451 AAATATTGGAATTGTTGTGCTATTCTG 57.410 29.630 0.00 0.00 38.67 3.02
3658 5673 6.839124 ATTGGAATTGTTGTGCTATTCTGA 57.161 33.333 0.00 0.00 38.67 3.27
3659 5674 6.647334 TTGGAATTGTTGTGCTATTCTGAA 57.353 33.333 0.00 0.00 38.67 3.02
3660 5675 6.647334 TGGAATTGTTGTGCTATTCTGAAA 57.353 33.333 0.00 0.00 38.67 2.69
3661 5676 7.230849 TGGAATTGTTGTGCTATTCTGAAAT 57.769 32.000 0.00 0.00 38.67 2.17
3662 5677 7.669427 TGGAATTGTTGTGCTATTCTGAAATT 58.331 30.769 0.00 0.00 38.67 1.82
3663 5678 7.599621 TGGAATTGTTGTGCTATTCTGAAATTG 59.400 33.333 0.00 0.00 38.67 2.32
3664 5679 6.956299 ATTGTTGTGCTATTCTGAAATTGC 57.044 33.333 0.00 0.19 41.95 3.56
3665 5680 5.710513 TGTTGTGCTATTCTGAAATTGCT 57.289 34.783 0.00 0.00 42.06 3.91
3666 5681 5.463286 TGTTGTGCTATTCTGAAATTGCTG 58.537 37.500 0.00 0.00 42.06 4.41
3667 5682 5.241285 TGTTGTGCTATTCTGAAATTGCTGA 59.759 36.000 0.00 0.00 42.06 4.26
3668 5683 5.963176 TGTGCTATTCTGAAATTGCTGAA 57.037 34.783 8.09 8.09 42.06 3.02
3669 5684 6.330004 TGTGCTATTCTGAAATTGCTGAAA 57.670 33.333 9.58 0.40 42.06 2.69
3670 5685 6.927416 TGTGCTATTCTGAAATTGCTGAAAT 58.073 32.000 9.58 2.64 42.06 2.17
3671 5686 8.054152 TGTGCTATTCTGAAATTGCTGAAATA 57.946 30.769 9.58 3.50 42.06 1.40
3672 5687 8.689061 TGTGCTATTCTGAAATTGCTGAAATAT 58.311 29.630 9.58 0.00 42.06 1.28
3673 5688 9.525409 GTGCTATTCTGAAATTGCTGAAATATT 57.475 29.630 9.58 0.00 42.06 1.28
3678 5693 7.599630 TCTGAAATTGCTGAAATATTTTGGC 57.400 32.000 15.06 15.06 0.00 4.52
3679 5694 6.594937 TCTGAAATTGCTGAAATATTTTGGCC 59.405 34.615 17.58 0.00 0.00 5.36
3680 5695 5.350914 TGAAATTGCTGAAATATTTTGGCCG 59.649 36.000 17.58 0.24 0.00 6.13
3681 5696 4.734398 ATTGCTGAAATATTTTGGCCGA 57.266 36.364 17.58 0.00 0.00 5.54
3682 5697 4.527509 TTGCTGAAATATTTTGGCCGAA 57.472 36.364 17.58 0.00 0.00 4.30
3683 5698 4.527509 TGCTGAAATATTTTGGCCGAAA 57.472 36.364 20.60 20.60 0.00 3.46
3684 5699 4.241681 TGCTGAAATATTTTGGCCGAAAC 58.758 39.130 20.75 8.10 0.00 2.78
3685 5700 4.241681 GCTGAAATATTTTGGCCGAAACA 58.758 39.130 20.75 9.96 0.00 2.83
3686 5701 4.869861 GCTGAAATATTTTGGCCGAAACAT 59.130 37.500 20.75 12.14 0.00 2.71
3687 5702 6.039616 GCTGAAATATTTTGGCCGAAACATA 58.960 36.000 20.75 10.53 0.00 2.29
3688 5703 6.533367 GCTGAAATATTTTGGCCGAAACATAA 59.467 34.615 20.75 7.15 0.00 1.90
3689 5704 7.224557 GCTGAAATATTTTGGCCGAAACATAAT 59.775 33.333 20.75 7.42 0.00 1.28
3690 5705 9.743057 CTGAAATATTTTGGCCGAAACATAATA 57.257 29.630 20.75 9.08 0.00 0.98
3696 5711 8.647143 ATTTTGGCCGAAACATAATATTTCAG 57.353 30.769 20.75 0.00 36.09 3.02
3697 5712 6.767524 TTGGCCGAAACATAATATTTCAGT 57.232 33.333 0.00 0.00 36.09 3.41
3698 5713 6.130298 TGGCCGAAACATAATATTTCAGTG 57.870 37.500 0.00 0.00 36.09 3.66
3699 5714 5.650266 TGGCCGAAACATAATATTTCAGTGT 59.350 36.000 0.00 0.00 36.09 3.55
3700 5715 6.183360 TGGCCGAAACATAATATTTCAGTGTC 60.183 38.462 0.00 0.00 36.09 3.67
3701 5716 6.038271 GGCCGAAACATAATATTTCAGTGTCT 59.962 38.462 0.00 0.00 36.09 3.41
3702 5717 6.907212 GCCGAAACATAATATTTCAGTGTCTG 59.093 38.462 0.00 0.00 36.09 3.51
3703 5718 6.907212 CCGAAACATAATATTTCAGTGTCTGC 59.093 38.462 0.00 0.00 36.09 4.26
3704 5719 7.201644 CCGAAACATAATATTTCAGTGTCTGCT 60.202 37.037 0.00 0.00 36.09 4.24
3705 5720 7.637519 CGAAACATAATATTTCAGTGTCTGCTG 59.362 37.037 0.00 0.00 36.09 4.41
3706 5721 8.565896 AAACATAATATTTCAGTGTCTGCTGA 57.434 30.769 0.00 0.00 43.03 4.26
3715 5730 5.213891 TCAGTGTCTGCTGAAATTACTGA 57.786 39.130 18.49 18.49 41.93 3.41
3716 5731 5.610398 TCAGTGTCTGCTGAAATTACTGAA 58.390 37.500 19.37 10.01 41.93 3.02
3717 5732 6.054941 TCAGTGTCTGCTGAAATTACTGAAA 58.945 36.000 19.37 7.04 41.93 2.69
3718 5733 6.712095 TCAGTGTCTGCTGAAATTACTGAAAT 59.288 34.615 19.37 0.00 41.93 2.17
3719 5734 7.229306 TCAGTGTCTGCTGAAATTACTGAAATT 59.771 33.333 19.37 0.00 41.93 1.82
3720 5735 7.536622 CAGTGTCTGCTGAAATTACTGAAATTC 59.463 37.037 16.51 0.00 36.76 2.17
3721 5736 7.229306 AGTGTCTGCTGAAATTACTGAAATTCA 59.771 33.333 0.00 0.00 36.76 2.57
3746 5761 7.672983 GTGAATTTCACCTAAATCTCACTGA 57.327 36.000 17.07 0.00 41.37 3.41
3747 5762 8.099364 GTGAATTTCACCTAAATCTCACTGAA 57.901 34.615 17.07 0.00 41.37 3.02
3748 5763 8.567948 GTGAATTTCACCTAAATCTCACTGAAA 58.432 33.333 17.07 0.00 41.37 2.69
3749 5764 8.786898 TGAATTTCACCTAAATCTCACTGAAAG 58.213 33.333 0.00 0.00 36.76 2.62
3750 5765 8.697507 AATTTCACCTAAATCTCACTGAAAGT 57.302 30.769 0.00 0.00 42.41 2.66
4057 6078 3.071892 TCGACTGGTTGGTAGGTTGAATT 59.928 43.478 0.00 0.00 0.00 2.17
4061 6082 5.697067 ACTGGTTGGTAGGTTGAATTGTAA 58.303 37.500 0.00 0.00 0.00 2.41
4062 6083 6.130569 ACTGGTTGGTAGGTTGAATTGTAAA 58.869 36.000 0.00 0.00 0.00 2.01
4103 6124 3.638160 ACAAAACACATGCAGATTCCAGT 59.362 39.130 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.610522 CAGCAGCTTGCCAACTTTACT 59.389 47.619 0.00 0.00 46.52 2.24
1 2 1.336240 CCAGCAGCTTGCCAACTTTAC 60.336 52.381 0.00 0.00 46.52 2.01
2 3 0.961019 CCAGCAGCTTGCCAACTTTA 59.039 50.000 0.00 0.00 46.52 1.85
4 5 2.205152 CCCAGCAGCTTGCCAACTT 61.205 57.895 0.00 0.00 46.52 2.66
5 6 2.599578 CCCAGCAGCTTGCCAACT 60.600 61.111 0.00 0.00 46.52 3.16
6 7 4.368543 GCCCAGCAGCTTGCCAAC 62.369 66.667 0.00 0.00 46.52 3.77
7 8 4.608774 AGCCCAGCAGCTTGCCAA 62.609 61.111 9.61 0.00 46.52 4.52
14 15 0.533531 AAAAGCAAAAGCCCAGCAGC 60.534 50.000 0.00 0.00 0.00 5.25
15 16 1.223187 CAAAAGCAAAAGCCCAGCAG 58.777 50.000 0.00 0.00 0.00 4.24
16 17 0.814812 GCAAAAGCAAAAGCCCAGCA 60.815 50.000 0.00 0.00 0.00 4.41
17 18 0.533531 AGCAAAAGCAAAAGCCCAGC 60.534 50.000 0.00 0.00 0.00 4.85
18 19 1.223187 CAGCAAAAGCAAAAGCCCAG 58.777 50.000 0.00 0.00 0.00 4.45
19 20 0.814812 GCAGCAAAAGCAAAAGCCCA 60.815 50.000 0.00 0.00 0.00 5.36
20 21 0.533531 AGCAGCAAAAGCAAAAGCCC 60.534 50.000 0.00 0.00 0.00 5.19
21 22 1.302366 AAGCAGCAAAAGCAAAAGCC 58.698 45.000 0.00 0.00 0.00 4.35
22 23 2.711885 CAAAGCAGCAAAAGCAAAAGC 58.288 42.857 0.00 0.00 0.00 3.51
23 24 2.353579 AGCAAAGCAGCAAAAGCAAAAG 59.646 40.909 0.00 0.00 36.85 2.27
24 25 2.358015 AGCAAAGCAGCAAAAGCAAAA 58.642 38.095 0.00 0.00 36.85 2.44
25 26 2.027003 AGCAAAGCAGCAAAAGCAAA 57.973 40.000 0.00 0.00 36.85 3.68
26 27 1.666700 CAAGCAAAGCAGCAAAAGCAA 59.333 42.857 0.00 0.00 36.85 3.91
27 28 1.292061 CAAGCAAAGCAGCAAAAGCA 58.708 45.000 0.00 0.00 36.85 3.91
28 29 0.041576 GCAAGCAAAGCAGCAAAAGC 60.042 50.000 0.00 0.00 36.85 3.51
29 30 1.260561 CAGCAAGCAAAGCAGCAAAAG 59.739 47.619 0.00 0.00 35.04 2.27
30 31 1.292061 CAGCAAGCAAAGCAGCAAAA 58.708 45.000 0.00 0.00 35.04 2.44
31 32 1.155424 GCAGCAAGCAAAGCAGCAAA 61.155 50.000 7.38 0.00 43.05 3.68
32 33 1.593209 GCAGCAAGCAAAGCAGCAA 60.593 52.632 7.38 0.00 43.05 3.91
33 34 2.028484 GCAGCAAGCAAAGCAGCA 59.972 55.556 7.38 0.00 43.05 4.41
46 47 0.099968 ACGTCAATCATGCATGCAGC 59.900 50.000 26.69 8.79 45.96 5.25
47 48 1.399089 TGACGTCAATCATGCATGCAG 59.601 47.619 26.69 17.32 0.00 4.41
48 49 1.130938 GTGACGTCAATCATGCATGCA 59.869 47.619 25.04 25.04 0.00 3.96
49 50 1.130938 TGTGACGTCAATCATGCATGC 59.869 47.619 21.95 11.82 0.00 4.06
50 51 3.685836 ATGTGACGTCAATCATGCATG 57.314 42.857 21.95 21.07 0.00 4.06
51 52 3.690628 TCAATGTGACGTCAATCATGCAT 59.309 39.130 21.95 15.10 0.00 3.96
52 53 3.072944 TCAATGTGACGTCAATCATGCA 58.927 40.909 21.95 13.31 0.00 3.96
53 54 3.371898 TCTCAATGTGACGTCAATCATGC 59.628 43.478 21.95 7.26 0.00 4.06
54 55 5.446875 CCTTCTCAATGTGACGTCAATCATG 60.447 44.000 21.95 16.34 0.00 3.07
55 56 4.633126 CCTTCTCAATGTGACGTCAATCAT 59.367 41.667 21.95 17.35 0.00 2.45
56 57 3.996363 CCTTCTCAATGTGACGTCAATCA 59.004 43.478 21.95 15.69 0.00 2.57
57 58 3.372206 CCCTTCTCAATGTGACGTCAATC 59.628 47.826 21.95 9.69 0.00 2.67
58 59 3.338249 CCCTTCTCAATGTGACGTCAAT 58.662 45.455 21.95 13.07 0.00 2.57
59 60 2.766313 CCCTTCTCAATGTGACGTCAA 58.234 47.619 21.95 11.23 0.00 3.18
60 61 1.608025 GCCCTTCTCAATGTGACGTCA 60.608 52.381 15.76 15.76 0.00 4.35
61 62 1.079503 GCCCTTCTCAATGTGACGTC 58.920 55.000 9.11 9.11 0.00 4.34
62 63 0.687354 AGCCCTTCTCAATGTGACGT 59.313 50.000 0.00 0.00 0.00 4.34
63 64 1.081892 CAGCCCTTCTCAATGTGACG 58.918 55.000 0.00 0.00 0.00 4.35
64 65 0.807496 GCAGCCCTTCTCAATGTGAC 59.193 55.000 0.00 0.00 0.00 3.67
65 66 0.694771 AGCAGCCCTTCTCAATGTGA 59.305 50.000 0.00 0.00 0.00 3.58
66 67 1.542492 AAGCAGCCCTTCTCAATGTG 58.458 50.000 0.00 0.00 0.00 3.21
67 68 2.298163 CAAAAGCAGCCCTTCTCAATGT 59.702 45.455 0.00 0.00 31.99 2.71
68 69 2.929592 GCAAAAGCAGCCCTTCTCAATG 60.930 50.000 0.00 0.00 31.99 2.82
69 70 1.274447 GCAAAAGCAGCCCTTCTCAAT 59.726 47.619 0.00 0.00 31.99 2.57
70 71 0.675633 GCAAAAGCAGCCCTTCTCAA 59.324 50.000 0.00 0.00 31.99 3.02
71 72 0.178981 AGCAAAAGCAGCCCTTCTCA 60.179 50.000 0.00 0.00 31.99 3.27
72 73 0.243095 CAGCAAAAGCAGCCCTTCTC 59.757 55.000 0.00 0.00 31.99 2.87
73 74 1.813728 GCAGCAAAAGCAGCCCTTCT 61.814 55.000 0.00 0.00 31.99 2.85
74 75 1.373873 GCAGCAAAAGCAGCCCTTC 60.374 57.895 0.00 0.00 31.99 3.46
75 76 1.405272 AAGCAGCAAAAGCAGCCCTT 61.405 50.000 0.00 0.00 34.51 3.95
76 77 1.405272 AAAGCAGCAAAAGCAGCCCT 61.405 50.000 0.00 0.00 0.00 5.19
77 78 1.070275 AAAGCAGCAAAAGCAGCCC 59.930 52.632 0.00 0.00 0.00 5.19
78 79 1.838568 GCAAAGCAGCAAAAGCAGCC 61.839 55.000 0.00 0.00 0.00 4.85
79 80 0.878961 AGCAAAGCAGCAAAAGCAGC 60.879 50.000 0.00 0.00 36.85 5.25
80 81 0.859232 CAGCAAAGCAGCAAAAGCAG 59.141 50.000 0.00 0.00 36.85 4.24
81 82 1.155424 GCAGCAAAGCAGCAAAAGCA 61.155 50.000 1.36 0.00 40.73 3.91
82 83 1.568025 GCAGCAAAGCAGCAAAAGC 59.432 52.632 1.36 0.00 40.73 3.51
83 84 0.872881 ACGCAGCAAAGCAGCAAAAG 60.873 50.000 7.15 0.00 41.08 2.27
84 85 1.141449 ACGCAGCAAAGCAGCAAAA 59.859 47.368 7.15 0.00 41.08 2.44
85 86 1.589461 CACGCAGCAAAGCAGCAAA 60.589 52.632 7.15 0.00 41.08 3.68
86 87 2.026445 CACGCAGCAAAGCAGCAA 59.974 55.556 7.15 0.00 41.08 3.91
87 88 4.634133 GCACGCAGCAAAGCAGCA 62.634 61.111 7.15 0.00 41.08 4.41
96 97 2.156446 GTTCATGCATGCACGCAGC 61.156 57.895 25.37 7.99 46.99 5.25
97 98 0.109458 AAGTTCATGCATGCACGCAG 60.109 50.000 25.37 13.46 46.99 5.18
99 100 0.711670 CAAAGTTCATGCATGCACGC 59.288 50.000 25.37 13.13 0.00 5.34
147 148 3.267812 AGGAATGATGCTTCCCTTCTCAA 59.732 43.478 0.00 0.00 44.93 3.02
148 149 2.848694 AGGAATGATGCTTCCCTTCTCA 59.151 45.455 0.00 0.00 44.93 3.27
149 150 3.118112 TCAGGAATGATGCTTCCCTTCTC 60.118 47.826 0.00 0.00 44.93 2.87
150 151 2.848694 TCAGGAATGATGCTTCCCTTCT 59.151 45.455 0.00 0.00 44.93 2.85
151 152 3.118112 TCTCAGGAATGATGCTTCCCTTC 60.118 47.826 0.00 2.13 44.93 3.46
153 154 2.485659 TCTCAGGAATGATGCTTCCCT 58.514 47.619 0.00 0.00 44.93 4.20
155 156 5.649782 TTTTTCTCAGGAATGATGCTTCC 57.350 39.130 0.00 0.00 44.29 3.46
186 188 5.447144 CCTCAAATGATTCAATAACGCGTCA 60.447 40.000 14.44 0.00 0.00 4.35
188 190 4.634004 TCCTCAAATGATTCAATAACGCGT 59.366 37.500 5.58 5.58 0.00 6.01
191 193 7.761409 TCCTTTCCTCAAATGATTCAATAACG 58.239 34.615 0.00 0.00 0.00 3.18
192 194 9.358872 GTTCCTTTCCTCAAATGATTCAATAAC 57.641 33.333 0.00 0.00 0.00 1.89
193 195 9.087871 TGTTCCTTTCCTCAAATGATTCAATAA 57.912 29.630 0.00 0.00 0.00 1.40
195 197 7.543359 TGTTCCTTTCCTCAAATGATTCAAT 57.457 32.000 0.00 0.00 0.00 2.57
196 198 6.975196 TGTTCCTTTCCTCAAATGATTCAA 57.025 33.333 0.00 0.00 0.00 2.69
199 201 5.840693 ACCTTGTTCCTTTCCTCAAATGATT 59.159 36.000 0.00 0.00 0.00 2.57
200 202 5.244626 CACCTTGTTCCTTTCCTCAAATGAT 59.755 40.000 0.00 0.00 0.00 2.45
201 203 4.584325 CACCTTGTTCCTTTCCTCAAATGA 59.416 41.667 0.00 0.00 0.00 2.57
202 204 4.797275 GCACCTTGTTCCTTTCCTCAAATG 60.797 45.833 0.00 0.00 0.00 2.32
203 205 3.321968 GCACCTTGTTCCTTTCCTCAAAT 59.678 43.478 0.00 0.00 0.00 2.32
204 206 2.693074 GCACCTTGTTCCTTTCCTCAAA 59.307 45.455 0.00 0.00 0.00 2.69
205 207 2.306847 GCACCTTGTTCCTTTCCTCAA 58.693 47.619 0.00 0.00 0.00 3.02
206 208 1.214175 TGCACCTTGTTCCTTTCCTCA 59.786 47.619 0.00 0.00 0.00 3.86
207 209 1.981256 TGCACCTTGTTCCTTTCCTC 58.019 50.000 0.00 0.00 0.00 3.71
208 210 2.031870 GTTGCACCTTGTTCCTTTCCT 58.968 47.619 0.00 0.00 0.00 3.36
209 211 1.754226 TGTTGCACCTTGTTCCTTTCC 59.246 47.619 0.00 0.00 0.00 3.13
210 212 3.733443 ATGTTGCACCTTGTTCCTTTC 57.267 42.857 0.00 0.00 0.00 2.62
250 283 6.435277 AGAAAATGTTGTGCCTGATAAGTGAT 59.565 34.615 0.00 0.00 0.00 3.06
254 287 6.320171 CAGAGAAAATGTTGTGCCTGATAAG 58.680 40.000 0.00 0.00 0.00 1.73
302 335 9.594478 TGTAACGATGAATTTATGATGTGTACT 57.406 29.630 0.00 0.00 0.00 2.73
332 365 1.065358 CCATTTTGCTTTGAGCGCAG 58.935 50.000 11.47 0.00 46.26 5.18
334 367 0.945265 TGCCATTTTGCTTTGAGCGC 60.945 50.000 0.00 0.00 46.26 5.92
366 400 4.481930 TCTTTGTTATTGGCGAACACTG 57.518 40.909 0.00 0.00 36.55 3.66
374 408 7.497579 TCCCTTTTCTTTTTCTTTGTTATTGGC 59.502 33.333 0.00 0.00 0.00 4.52
375 409 8.956533 TCCCTTTTCTTTTTCTTTGTTATTGG 57.043 30.769 0.00 0.00 0.00 3.16
417 451 0.794473 CAACGCTACCCGGTTCTTTC 59.206 55.000 0.00 0.00 42.52 2.62
427 466 0.240145 GGAAAACCAGCAACGCTACC 59.760 55.000 0.00 0.00 36.40 3.18
433 472 3.392882 CATTCCTTGGAAAACCAGCAAC 58.607 45.455 6.16 0.00 0.00 4.17
443 482 1.750193 GGTCGATGCATTCCTTGGAA 58.250 50.000 0.00 4.43 0.00 3.53
459 498 2.159085 CCCCAAGAATAGAGTGTCGGTC 60.159 54.545 0.00 0.00 0.00 4.79
463 502 5.678955 ACTTACCCCAAGAATAGAGTGTC 57.321 43.478 0.00 0.00 37.71 3.67
488 531 7.279758 GGAACAGAACATGATTCTCTCCTTAAG 59.720 40.741 17.63 0.00 30.42 1.85
499 542 4.083110 CGAAGCAAGGAACAGAACATGATT 60.083 41.667 0.00 0.00 0.00 2.57
641 689 3.000041 AGCGATCTCAAACGTATTGCAA 59.000 40.909 0.00 0.00 33.26 4.08
713 761 2.022240 AAGCGGGAGGAAGAGATCGC 62.022 60.000 0.00 0.00 42.91 4.58
934 1031 5.181056 CCGCCAAAGAATATATATGTGTGCA 59.819 40.000 0.00 0.00 0.00 4.57
980 1116 2.265739 CTCAGCTAGGGCGTGCAA 59.734 61.111 0.00 0.00 44.37 4.08
1047 1183 2.837291 GCACCCAACTTGGCCACA 60.837 61.111 3.88 0.00 35.79 4.17
1077 1213 1.736645 GCGCCGAAGCTTGTACTCA 60.737 57.895 2.10 0.00 36.60 3.41
1147 1283 2.643551 CCATGTCGCCCAAAGAATAGT 58.356 47.619 0.00 0.00 0.00 2.12
1183 1319 1.402968 CAAGTCCTTGGATTCCGCATG 59.597 52.381 0.00 0.00 36.95 4.06
1206 1342 1.003233 GAGGTCCAGCGCTTCCTTT 60.003 57.895 21.35 3.94 0.00 3.11
1244 1380 1.883926 TGAGGATGAAGTCGTCGACAA 59.116 47.619 26.17 12.32 43.10 3.18
1296 1432 3.632643 TTGATCTTGCTCTGCACCATA 57.367 42.857 0.00 0.00 38.71 2.74
1320 1456 2.175499 CCTGAAATCATGGAAGGGGCTA 59.825 50.000 0.00 0.00 0.00 3.93
1388 1530 2.288457 TGAGCAGACTTCTTCTTGTCCG 60.288 50.000 0.00 0.00 34.02 4.79
1392 1534 2.810852 GGGTTGAGCAGACTTCTTCTTG 59.189 50.000 0.00 0.00 28.96 3.02
1398 1540 2.626840 GAGATGGGTTGAGCAGACTTC 58.373 52.381 0.00 0.00 0.00 3.01
1439 1582 1.453197 GGGGTACTGGATTTGGCGG 60.453 63.158 0.00 0.00 0.00 6.13
1475 1634 2.585330 TGCTGACAAATGGAGCTTGAA 58.415 42.857 0.00 0.00 33.66 2.69
1522 1681 0.326904 AGGTCATCCCTCCATCTGCA 60.327 55.000 0.00 0.00 40.71 4.41
1544 1703 5.337330 CGTTCTTCTCCTACCAGGTATTTGT 60.337 44.000 0.00 0.00 36.53 2.83
1568 1751 0.179092 GGATGCCATTTTGAGCTGCC 60.179 55.000 0.00 0.00 0.00 4.85
1591 1774 2.515991 CGTGCCGGCCATACCAAT 60.516 61.111 26.77 0.00 39.03 3.16
1607 1790 1.365999 GCAAGGGTTGTTTTCCCCG 59.634 57.895 0.00 0.00 46.17 5.73
1640 1835 2.491693 TGATTTTCAATTGCCTCGTCCC 59.508 45.455 0.00 0.00 0.00 4.46
1645 1840 5.138125 TGGAACTGATTTTCAATTGCCTC 57.862 39.130 0.00 0.00 0.00 4.70
1646 1841 4.590222 ACTGGAACTGATTTTCAATTGCCT 59.410 37.500 0.00 0.00 0.00 4.75
1647 1842 4.886579 ACTGGAACTGATTTTCAATTGCC 58.113 39.130 0.00 0.00 0.00 4.52
1648 1843 4.925646 GGACTGGAACTGATTTTCAATTGC 59.074 41.667 0.00 0.00 0.00 3.56
1649 1844 5.473039 GGGACTGGAACTGATTTTCAATTG 58.527 41.667 0.00 0.00 0.00 2.32
1650 1845 4.218417 CGGGACTGGAACTGATTTTCAATT 59.782 41.667 0.00 0.00 0.00 2.32
1774 1969 3.306989 GCATGGATGATATGTTCCTCCGA 60.307 47.826 0.00 0.00 40.91 4.55
1813 2008 0.318107 CTTGCGCACCTTTTGTCCTG 60.318 55.000 11.12 0.00 0.00 3.86
1860 2057 5.101628 TCACAGTGCACATTTCAAAAAGAC 58.898 37.500 21.04 0.00 0.00 3.01
1923 2152 3.706086 ACCAAATTTCAAACAGCTGGACT 59.294 39.130 19.93 0.00 0.00 3.85
1927 2156 5.111293 ACTTGACCAAATTTCAAACAGCTG 58.889 37.500 13.48 13.48 32.61 4.24
2070 3566 6.920817 ACGAGTTGTGATGACAATTCTACTA 58.079 36.000 16.21 0.00 43.34 1.82
2108 3837 5.886609 TGTTTTCCAAATCATCTCCTGGTA 58.113 37.500 0.00 0.00 0.00 3.25
2109 3838 4.739793 TGTTTTCCAAATCATCTCCTGGT 58.260 39.130 0.00 0.00 0.00 4.00
2110 3839 4.381292 GCTGTTTTCCAAATCATCTCCTGG 60.381 45.833 0.00 0.00 0.00 4.45
2155 3884 6.405278 TCGTGTCCATATATCACATTCAGT 57.595 37.500 4.48 0.00 33.04 3.41
2174 3984 2.614057 GGTCCATAGAGCCATTTTCGTG 59.386 50.000 0.00 0.00 34.29 4.35
2175 3985 2.505819 AGGTCCATAGAGCCATTTTCGT 59.494 45.455 0.00 0.00 41.64 3.85
2199 4030 1.005340 GAGCAGCGACATCTTCCTTG 58.995 55.000 0.00 0.00 0.00 3.61
2237 4098 2.135933 CACAGTCGAAACCTTCTCCAC 58.864 52.381 0.00 0.00 0.00 4.02
2250 4111 3.190079 CACAATAGGATGGTCACAGTCG 58.810 50.000 0.00 0.00 0.00 4.18
2328 4189 1.497991 TTCTTTGTTGCTCTCGGACG 58.502 50.000 0.00 0.00 0.00 4.79
2344 4208 6.506413 TCCCTTAAATGTACCCCTAGTTTTCT 59.494 38.462 0.00 0.00 0.00 2.52
2345 4209 6.724351 TCCCTTAAATGTACCCCTAGTTTTC 58.276 40.000 0.00 0.00 0.00 2.29
2423 4293 1.515521 CGGTTCAAACCCTGGAGTGC 61.516 60.000 6.34 0.00 46.53 4.40
2521 4391 4.459337 GTCAAAAGGGTAATTCTCAGGGTG 59.541 45.833 0.00 0.00 0.00 4.61
2614 4484 2.603173 CCTTGTTGCAAAGCTCTTCGAC 60.603 50.000 0.00 0.00 0.00 4.20
2633 4503 2.371841 TCCATACGCAGCATAAATCCCT 59.628 45.455 0.00 0.00 0.00 4.20
2655 4525 0.252375 AGGGCATGCCAAATGAACCT 60.252 50.000 36.56 19.45 37.98 3.50
2742 4620 3.442625 CCAATGTGATGTCAGAACTGCAT 59.557 43.478 9.93 9.93 32.75 3.96
2932 4816 5.449297 TGATATTGAAGATCCAACACCCA 57.551 39.130 0.00 0.00 0.00 4.51
2972 4859 0.035439 TCCAAGGGCCTCGAATTCAC 60.035 55.000 6.46 0.00 0.00 3.18
3274 5279 1.888436 GATCTCACGTGGCACCTCCA 61.888 60.000 17.00 0.00 44.18 3.86
3279 5288 2.501223 TTCCCGATCTCACGTGGCAC 62.501 60.000 17.00 7.79 0.00 5.01
3320 5329 1.202927 AGCATGGTGTACTGCAGGTTT 60.203 47.619 19.93 0.00 40.88 3.27
3474 5489 8.422973 TTCTGAAACTGAAATTGAAAACCATG 57.577 30.769 0.00 0.00 0.00 3.66
3475 5490 9.447157 TTTTCTGAAACTGAAATTGAAAACCAT 57.553 25.926 1.58 0.00 32.91 3.55
3476 5491 8.839310 TTTTCTGAAACTGAAATTGAAAACCA 57.161 26.923 1.58 0.00 32.91 3.67
3483 5498 9.429600 GCTGAAATTTTTCTGAAACTGAAATTG 57.570 29.630 12.42 0.00 38.07 2.32
3484 5499 9.165035 TGCTGAAATTTTTCTGAAACTGAAATT 57.835 25.926 12.42 3.83 38.07 1.82
3485 5500 8.606602 GTGCTGAAATTTTTCTGAAACTGAAAT 58.393 29.630 12.42 0.00 38.07 2.17
3486 5501 7.064490 GGTGCTGAAATTTTTCTGAAACTGAAA 59.936 33.333 12.42 0.00 38.07 2.69
3487 5502 6.534793 GGTGCTGAAATTTTTCTGAAACTGAA 59.465 34.615 12.42 0.00 38.07 3.02
3488 5503 6.042143 GGTGCTGAAATTTTTCTGAAACTGA 58.958 36.000 12.42 0.00 38.07 3.41
3489 5504 5.811613 TGGTGCTGAAATTTTTCTGAAACTG 59.188 36.000 12.42 0.00 38.07 3.16
3490 5505 5.976458 TGGTGCTGAAATTTTTCTGAAACT 58.024 33.333 12.42 0.00 38.07 2.66
3491 5506 6.456853 GGTTGGTGCTGAAATTTTTCTGAAAC 60.457 38.462 12.42 6.57 38.07 2.78
3492 5507 5.584251 GGTTGGTGCTGAAATTTTTCTGAAA 59.416 36.000 12.42 0.00 38.07 2.69
3493 5508 5.115480 GGTTGGTGCTGAAATTTTTCTGAA 58.885 37.500 12.42 1.18 38.07 3.02
3494 5509 4.692228 GGTTGGTGCTGAAATTTTTCTGA 58.308 39.130 12.42 0.00 38.07 3.27
3495 5510 3.490526 CGGTTGGTGCTGAAATTTTTCTG 59.509 43.478 4.80 5.32 38.02 3.02
3496 5511 3.383185 TCGGTTGGTGCTGAAATTTTTCT 59.617 39.130 4.80 0.00 38.02 2.52
3497 5512 3.712187 TCGGTTGGTGCTGAAATTTTTC 58.288 40.909 0.00 0.00 37.69 2.29
3498 5513 3.810310 TCGGTTGGTGCTGAAATTTTT 57.190 38.095 0.00 0.00 0.00 1.94
3499 5514 3.810310 TTCGGTTGGTGCTGAAATTTT 57.190 38.095 0.00 0.00 31.49 1.82
3500 5515 3.810310 TTTCGGTTGGTGCTGAAATTT 57.190 38.095 0.00 0.00 38.41 1.82
3503 5518 2.034053 GTGATTTCGGTTGGTGCTGAAA 59.966 45.455 3.06 3.06 44.68 2.69
3504 5519 1.606668 GTGATTTCGGTTGGTGCTGAA 59.393 47.619 0.00 0.00 32.46 3.02
3505 5520 1.202758 AGTGATTTCGGTTGGTGCTGA 60.203 47.619 0.00 0.00 0.00 4.26
3506 5521 1.069022 CAGTGATTTCGGTTGGTGCTG 60.069 52.381 0.00 0.00 0.00 4.41
3507 5522 1.202758 TCAGTGATTTCGGTTGGTGCT 60.203 47.619 0.00 0.00 0.00 4.40
3508 5523 1.234821 TCAGTGATTTCGGTTGGTGC 58.765 50.000 0.00 0.00 0.00 5.01
3509 5524 3.980646 TTTCAGTGATTTCGGTTGGTG 57.019 42.857 0.00 0.00 0.00 4.17
3510 5525 4.582656 TGAATTTCAGTGATTTCGGTTGGT 59.417 37.500 0.00 0.00 0.00 3.67
3511 5526 5.119931 TGAATTTCAGTGATTTCGGTTGG 57.880 39.130 0.00 0.00 0.00 3.77
3528 5543 8.636213 ACTGAAATCACTGAAATTCACTGAATT 58.364 29.630 10.71 10.71 43.07 2.17
3529 5544 8.174733 ACTGAAATCACTGAAATTCACTGAAT 57.825 30.769 8.87 0.00 33.25 2.57
3530 5545 7.572523 ACTGAAATCACTGAAATTCACTGAA 57.427 32.000 8.87 0.00 0.00 3.02
3531 5546 7.572523 AACTGAAATCACTGAAATTCACTGA 57.427 32.000 7.57 7.57 0.00 3.41
3532 5547 7.380602 GGAAACTGAAATCACTGAAATTCACTG 59.619 37.037 0.00 0.00 0.00 3.66
3533 5548 7.068593 TGGAAACTGAAATCACTGAAATTCACT 59.931 33.333 0.00 0.00 0.00 3.41
3534 5549 7.202526 TGGAAACTGAAATCACTGAAATTCAC 58.797 34.615 0.00 0.13 0.00 3.18
3535 5550 7.345422 TGGAAACTGAAATCACTGAAATTCA 57.655 32.000 0.00 0.00 0.00 2.57
3536 5551 8.822652 AATGGAAACTGAAATCACTGAAATTC 57.177 30.769 0.00 0.00 0.00 2.17
3537 5552 9.264719 GAAATGGAAACTGAAATCACTGAAATT 57.735 29.630 0.00 0.00 0.00 1.82
3538 5553 8.423349 TGAAATGGAAACTGAAATCACTGAAAT 58.577 29.630 0.00 0.00 0.00 2.17
3539 5554 7.780064 TGAAATGGAAACTGAAATCACTGAAA 58.220 30.769 0.00 0.00 0.00 2.69
3540 5555 7.345422 TGAAATGGAAACTGAAATCACTGAA 57.655 32.000 0.00 0.00 0.00 3.02
3541 5556 6.515531 GCTGAAATGGAAACTGAAATCACTGA 60.516 38.462 0.00 0.00 0.00 3.41
3542 5557 5.632347 GCTGAAATGGAAACTGAAATCACTG 59.368 40.000 0.00 0.00 0.00 3.66
3543 5558 5.279156 GGCTGAAATGGAAACTGAAATCACT 60.279 40.000 0.00 0.00 0.00 3.41
3544 5559 4.925646 GGCTGAAATGGAAACTGAAATCAC 59.074 41.667 0.00 0.00 0.00 3.06
3545 5560 4.588106 TGGCTGAAATGGAAACTGAAATCA 59.412 37.500 0.00 0.00 0.00 2.57
3546 5561 5.138125 TGGCTGAAATGGAAACTGAAATC 57.862 39.130 0.00 0.00 0.00 2.17
3547 5562 5.549742 TTGGCTGAAATGGAAACTGAAAT 57.450 34.783 0.00 0.00 0.00 2.17
3548 5563 5.350504 TTTGGCTGAAATGGAAACTGAAA 57.649 34.783 0.00 0.00 0.00 2.69
3549 5564 5.299148 CATTTGGCTGAAATGGAAACTGAA 58.701 37.500 11.68 0.00 45.06 3.02
3550 5565 4.885413 CATTTGGCTGAAATGGAAACTGA 58.115 39.130 11.68 0.00 45.06 3.41
3554 5569 8.359821 TTTCGGTCATTTGGCTGAAATGGAAA 62.360 38.462 13.66 15.05 46.47 3.13
3555 5570 6.962304 TTTCGGTCATTTGGCTGAAATGGAA 61.962 40.000 13.66 11.66 46.47 3.53
3556 5571 5.531829 TTTCGGTCATTTGGCTGAAATGGA 61.532 41.667 13.66 7.83 46.47 3.41
3557 5572 3.305950 TTTCGGTCATTTGGCTGAAATGG 60.306 43.478 13.66 6.22 46.47 3.16
3558 5573 3.911868 TTTCGGTCATTTGGCTGAAATG 58.088 40.909 13.66 12.79 46.47 2.32
3561 5576 5.417266 TGAATATTTCGGTCATTTGGCTGAA 59.583 36.000 2.35 2.35 42.66 3.02
3562 5577 4.946772 TGAATATTTCGGTCATTTGGCTGA 59.053 37.500 0.00 0.00 32.40 4.26
3563 5578 5.036737 GTGAATATTTCGGTCATTTGGCTG 58.963 41.667 0.00 0.00 0.00 4.85
3564 5579 4.949856 AGTGAATATTTCGGTCATTTGGCT 59.050 37.500 0.00 0.00 0.00 4.75
3565 5580 5.248870 AGTGAATATTTCGGTCATTTGGC 57.751 39.130 0.00 0.00 0.00 4.52
3566 5581 6.851609 TCAAGTGAATATTTCGGTCATTTGG 58.148 36.000 8.75 0.00 38.68 3.28
3567 5582 8.915871 ATTCAAGTGAATATTTCGGTCATTTG 57.084 30.769 4.71 4.16 42.48 2.32
3568 5583 9.573133 GAATTCAAGTGAATATTTCGGTCATTT 57.427 29.630 6.95 0.00 43.41 2.32
3569 5584 8.739039 TGAATTCAAGTGAATATTTCGGTCATT 58.261 29.630 5.45 0.00 43.41 2.57
3570 5585 8.279970 TGAATTCAAGTGAATATTTCGGTCAT 57.720 30.769 5.45 0.00 43.41 3.06
3571 5586 7.680442 TGAATTCAAGTGAATATTTCGGTCA 57.320 32.000 5.45 3.23 43.41 4.02
3572 5587 9.573133 AATTGAATTCAAGTGAATATTTCGGTC 57.427 29.630 24.17 0.85 43.41 4.79
3624 5639 9.727627 GCACAACAATTCCAATATTTTTCAAAA 57.272 25.926 0.00 0.00 0.00 2.44
3625 5640 9.118300 AGCACAACAATTCCAATATTTTTCAAA 57.882 25.926 0.00 0.00 0.00 2.69
3626 5641 8.674263 AGCACAACAATTCCAATATTTTTCAA 57.326 26.923 0.00 0.00 0.00 2.69
3627 5642 9.941325 ATAGCACAACAATTCCAATATTTTTCA 57.059 25.926 0.00 0.00 0.00 2.69
3631 5646 9.590451 CAGAATAGCACAACAATTCCAATATTT 57.410 29.630 0.00 0.00 31.35 1.40
3632 5647 8.970020 TCAGAATAGCACAACAATTCCAATATT 58.030 29.630 0.00 0.00 31.35 1.28
3633 5648 8.523915 TCAGAATAGCACAACAATTCCAATAT 57.476 30.769 0.00 0.00 31.35 1.28
3634 5649 7.936496 TCAGAATAGCACAACAATTCCAATA 57.064 32.000 0.00 0.00 31.35 1.90
3635 5650 6.839124 TCAGAATAGCACAACAATTCCAAT 57.161 33.333 0.00 0.00 31.35 3.16
3636 5651 6.647334 TTCAGAATAGCACAACAATTCCAA 57.353 33.333 0.00 0.00 31.35 3.53
3637 5652 6.647334 TTTCAGAATAGCACAACAATTCCA 57.353 33.333 0.00 0.00 31.35 3.53
3638 5653 7.412237 GCAATTTCAGAATAGCACAACAATTCC 60.412 37.037 0.00 0.00 31.35 3.01
3639 5654 7.330208 AGCAATTTCAGAATAGCACAACAATTC 59.670 33.333 5.20 0.00 0.00 2.17
3640 5655 7.117236 CAGCAATTTCAGAATAGCACAACAATT 59.883 33.333 5.20 0.00 0.00 2.32
3641 5656 6.588756 CAGCAATTTCAGAATAGCACAACAAT 59.411 34.615 5.20 0.00 0.00 2.71
3642 5657 5.921976 CAGCAATTTCAGAATAGCACAACAA 59.078 36.000 5.20 0.00 0.00 2.83
3643 5658 5.241285 TCAGCAATTTCAGAATAGCACAACA 59.759 36.000 5.20 0.00 0.00 3.33
3644 5659 5.702865 TCAGCAATTTCAGAATAGCACAAC 58.297 37.500 5.20 0.00 0.00 3.32
3645 5660 5.963176 TCAGCAATTTCAGAATAGCACAA 57.037 34.783 5.20 0.00 0.00 3.33
3646 5661 5.963176 TTCAGCAATTTCAGAATAGCACA 57.037 34.783 5.20 0.00 0.00 4.57
3647 5662 9.525409 AATATTTCAGCAATTTCAGAATAGCAC 57.475 29.630 5.20 0.00 0.00 4.40
3652 5667 8.671028 GCCAAAATATTTCAGCAATTTCAGAAT 58.329 29.630 14.39 0.00 0.00 2.40
3653 5668 7.119553 GGCCAAAATATTTCAGCAATTTCAGAA 59.880 33.333 18.73 0.00 0.00 3.02
3654 5669 6.594937 GGCCAAAATATTTCAGCAATTTCAGA 59.405 34.615 18.73 0.00 0.00 3.27
3655 5670 6.455913 CGGCCAAAATATTTCAGCAATTTCAG 60.456 38.462 18.73 3.61 0.00 3.02
3656 5671 5.350914 CGGCCAAAATATTTCAGCAATTTCA 59.649 36.000 18.73 0.00 0.00 2.69
3657 5672 5.580297 TCGGCCAAAATATTTCAGCAATTTC 59.420 36.000 18.73 5.61 0.00 2.17
3658 5673 5.486526 TCGGCCAAAATATTTCAGCAATTT 58.513 33.333 18.73 0.00 0.00 1.82
3659 5674 5.083533 TCGGCCAAAATATTTCAGCAATT 57.916 34.783 18.73 0.00 0.00 2.32
3660 5675 4.734398 TCGGCCAAAATATTTCAGCAAT 57.266 36.364 18.73 0.00 0.00 3.56
3661 5676 4.527509 TTCGGCCAAAATATTTCAGCAA 57.472 36.364 18.73 7.49 0.00 3.91
3662 5677 4.241681 GTTTCGGCCAAAATATTTCAGCA 58.758 39.130 18.73 2.88 0.00 4.41
3663 5678 4.241681 TGTTTCGGCCAAAATATTTCAGC 58.758 39.130 2.24 11.95 0.00 4.26
3664 5679 8.647143 ATTATGTTTCGGCCAAAATATTTCAG 57.353 30.769 3.53 0.00 0.00 3.02
3670 5685 9.743057 CTGAAATATTATGTTTCGGCCAAAATA 57.257 29.630 2.24 0.00 38.18 1.40
3671 5686 8.257306 ACTGAAATATTATGTTTCGGCCAAAAT 58.743 29.630 18.77 0.00 42.81 1.82
3672 5687 7.543868 CACTGAAATATTATGTTTCGGCCAAAA 59.456 33.333 18.77 0.00 42.81 2.44
3673 5688 7.032580 CACTGAAATATTATGTTTCGGCCAAA 58.967 34.615 18.77 0.00 42.81 3.28
3674 5689 6.151985 ACACTGAAATATTATGTTTCGGCCAA 59.848 34.615 18.77 0.00 42.81 4.52
3675 5690 5.650266 ACACTGAAATATTATGTTTCGGCCA 59.350 36.000 18.77 0.00 42.81 5.36
3676 5691 6.038271 AGACACTGAAATATTATGTTTCGGCC 59.962 38.462 18.77 10.91 42.81 6.13
3677 5692 6.907212 CAGACACTGAAATATTATGTTTCGGC 59.093 38.462 18.77 7.05 42.81 5.54
3678 5693 6.907212 GCAGACACTGAAATATTATGTTTCGG 59.093 38.462 17.71 17.71 43.98 4.30
3679 5694 7.637519 CAGCAGACACTGAAATATTATGTTTCG 59.362 37.037 9.28 7.13 40.25 3.46
3680 5695 8.668353 TCAGCAGACACTGAAATATTATGTTTC 58.332 33.333 7.36 7.36 43.59 2.78
3681 5696 8.565896 TCAGCAGACACTGAAATATTATGTTT 57.434 30.769 2.81 0.00 43.59 2.83
3693 5708 5.213891 TCAGTAATTTCAGCAGACACTGA 57.786 39.130 2.81 7.52 44.84 3.41
3694 5709 5.929697 TTCAGTAATTTCAGCAGACACTG 57.070 39.130 0.00 0.00 39.12 3.66
3695 5710 7.229306 TGAATTTCAGTAATTTCAGCAGACACT 59.771 33.333 0.00 0.00 36.59 3.55
3696 5711 7.362662 TGAATTTCAGTAATTTCAGCAGACAC 58.637 34.615 0.00 0.00 36.59 3.67
3697 5712 7.509141 TGAATTTCAGTAATTTCAGCAGACA 57.491 32.000 0.00 0.00 36.59 3.41
3716 5731 9.300681 TGAGATTTAGGTGAAATTCACTGAATT 57.699 29.630 23.30 10.71 46.19 2.17
3717 5732 8.734386 GTGAGATTTAGGTGAAATTCACTGAAT 58.266 33.333 23.30 18.99 46.19 2.57
3718 5733 7.939039 AGTGAGATTTAGGTGAAATTCACTGAA 59.061 33.333 23.30 15.24 46.19 3.02
3719 5734 7.453393 AGTGAGATTTAGGTGAAATTCACTGA 58.547 34.615 23.30 10.54 46.19 3.41
3720 5735 7.678947 AGTGAGATTTAGGTGAAATTCACTG 57.321 36.000 23.30 0.00 46.19 3.66
3721 5736 7.453393 TCAGTGAGATTTAGGTGAAATTCACT 58.547 34.615 23.30 13.04 46.19 3.41
3722 5737 7.672983 TCAGTGAGATTTAGGTGAAATTCAC 57.327 36.000 17.16 17.16 46.23 3.18
3723 5738 8.690203 TTTCAGTGAGATTTAGGTGAAATTCA 57.310 30.769 0.00 0.00 37.90 2.57
3724 5739 8.787852 ACTTTCAGTGAGATTTAGGTGAAATTC 58.212 33.333 0.00 0.00 37.90 2.17
3725 5740 8.697507 ACTTTCAGTGAGATTTAGGTGAAATT 57.302 30.769 0.00 0.00 37.90 1.82
3738 5753 8.113303 TAACCATCGTTTTCACTTTCAGTGAGA 61.113 37.037 6.69 0.13 43.21 3.27
3739 5754 6.018262 TAACCATCGTTTTCACTTTCAGTGAG 60.018 38.462 6.69 0.00 43.21 3.51
3740 5755 5.818336 TAACCATCGTTTTCACTTTCAGTGA 59.182 36.000 2.34 2.34 42.02 3.41
3741 5756 5.907391 GTAACCATCGTTTTCACTTTCAGTG 59.093 40.000 0.00 0.00 39.22 3.66
3742 5757 5.587043 TGTAACCATCGTTTTCACTTTCAGT 59.413 36.000 0.00 0.00 33.17 3.41
3743 5758 6.055231 TGTAACCATCGTTTTCACTTTCAG 57.945 37.500 0.00 0.00 33.17 3.02
3744 5759 6.259638 GTTGTAACCATCGTTTTCACTTTCA 58.740 36.000 0.00 0.00 33.17 2.69
3745 5760 6.727569 GTTGTAACCATCGTTTTCACTTTC 57.272 37.500 0.00 0.00 33.17 2.62
3760 5775 2.045634 GAGCCCCCGGTTGTAACC 60.046 66.667 0.00 3.67 45.76 2.85
3761 5776 1.673337 GTGAGCCCCCGGTTGTAAC 60.673 63.158 0.00 0.00 0.00 2.50
3762 5777 2.148052 TGTGAGCCCCCGGTTGTAA 61.148 57.895 0.00 0.00 0.00 2.41
4057 6078 1.587066 ACGATTAGGCCCCCTTTACA 58.413 50.000 0.00 0.00 34.61 2.41
4061 6082 1.613061 CCAACGATTAGGCCCCCTT 59.387 57.895 0.00 0.00 34.61 3.95
4062 6083 2.383601 CCCAACGATTAGGCCCCCT 61.384 63.158 0.00 0.00 37.71 4.79
4103 6124 3.855255 TGAAGTGTTCCTTGATCCACA 57.145 42.857 0.00 0.00 32.03 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.