Multiple sequence alignment - TraesCS4A01G493800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G493800 chr4A 100.000 2756 0 0 1 2756 742139912 742137157 0.000000e+00 5090.0
1 TraesCS4A01G493800 chr4A 85.697 839 120 0 958 1796 10638073 10637235 0.000000e+00 885.0
2 TraesCS4A01G493800 chr4A 89.216 204 19 2 85 288 602242364 602242564 4.560000e-63 252.0
3 TraesCS4A01G493800 chr4A 90.506 158 15 0 1278 1435 723082240 723082397 2.780000e-50 209.0
4 TraesCS4A01G493800 chr4A 89.873 158 16 0 1278 1435 723054750 723054907 1.290000e-48 204.0
5 TraesCS4A01G493800 chr4A 86.932 176 11 4 287 450 602246614 602246789 1.300000e-43 187.0
6 TraesCS4A01G493800 chr4A 97.647 85 1 1 3 87 602241821 602241904 7.950000e-31 145.0
7 TraesCS4A01G493800 chr4A 93.333 75 5 0 376 450 672211347 672211421 8.070000e-21 111.0
8 TraesCS4A01G493800 chr7A 92.090 1517 68 22 954 2452 2751620 2753102 0.000000e+00 2089.0
9 TraesCS4A01G493800 chr7A 94.286 1015 39 5 954 1968 2604490 2603495 0.000000e+00 1535.0
10 TraesCS4A01G493800 chr7A 94.488 508 22 4 451 955 2605049 2604545 0.000000e+00 778.0
11 TraesCS4A01G493800 chr7A 92.773 512 26 6 451 955 2751058 2751565 0.000000e+00 730.0
12 TraesCS4A01G493800 chr7A 91.018 501 34 6 457 949 2102828 2103325 0.000000e+00 665.0
13 TraesCS4A01G493800 chr7A 92.116 241 19 0 2515 2755 2603452 2603212 9.450000e-90 340.0
14 TraesCS4A01G493800 chr7A 90.164 244 21 2 2515 2755 2753106 2753349 5.730000e-82 315.0
15 TraesCS4A01G493800 chr7D 87.140 1423 130 17 956 2339 3597358 3598766 0.000000e+00 1565.0
16 TraesCS4A01G493800 chr7D 80.197 813 138 13 958 1757 9923902 9924704 3.060000e-164 588.0
17 TraesCS4A01G493800 chr7D 88.136 413 40 6 545 949 3596884 3597295 1.480000e-132 483.0
18 TraesCS4A01G493800 chr7D 94.444 72 4 0 2685 2756 3599940 3600011 8.070000e-21 111.0
19 TraesCS4A01G493800 chr4D 86.190 840 114 2 958 1796 458384286 458385124 0.000000e+00 907.0
20 TraesCS4A01G493800 chr4B 86.190 840 115 1 958 1796 572553704 572554543 0.000000e+00 907.0
21 TraesCS4A01G493800 chr6B 78.451 297 28 19 153 416 23468078 23468371 7.900000e-36 161.0
22 TraesCS4A01G493800 chr6B 91.304 69 6 0 381 449 39341660 39341592 8.130000e-16 95.3
23 TraesCS4A01G493800 chrUn 93.333 75 5 0 376 450 284723802 284723876 8.070000e-21 111.0
24 TraesCS4A01G493800 chrUn 88.043 92 10 1 376 467 68520295 68520385 1.040000e-19 108.0
25 TraesCS4A01G493800 chrUn 89.333 75 8 0 376 450 16381014 16380940 8.130000e-16 95.3
26 TraesCS4A01G493800 chr7B 91.139 79 6 1 376 453 721074576 721074654 3.750000e-19 106.0
27 TraesCS4A01G493800 chr5B 91.176 68 6 0 382 449 526735573 526735640 2.920000e-15 93.5
28 TraesCS4A01G493800 chr1D 89.189 74 7 1 381 453 457549977 457549904 1.050000e-14 91.6
29 TraesCS4A01G493800 chr2A 96.226 53 1 1 3 55 31693582 31693633 4.890000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G493800 chr4A 742137157 742139912 2755 True 5090.000000 5090 100.000000 1 2756 1 chr4A.!!$R2 2755
1 TraesCS4A01G493800 chr4A 10637235 10638073 838 True 885.000000 885 85.697000 958 1796 1 chr4A.!!$R1 838
2 TraesCS4A01G493800 chr7A 2751058 2753349 2291 False 1044.666667 2089 91.675667 451 2755 3 chr7A.!!$F2 2304
3 TraesCS4A01G493800 chr7A 2603212 2605049 1837 True 884.333333 1535 93.630000 451 2755 3 chr7A.!!$R1 2304
4 TraesCS4A01G493800 chr7D 3596884 3600011 3127 False 719.666667 1565 89.906667 545 2756 3 chr7D.!!$F2 2211
5 TraesCS4A01G493800 chr7D 9923902 9924704 802 False 588.000000 588 80.197000 958 1757 1 chr7D.!!$F1 799
6 TraesCS4A01G493800 chr4D 458384286 458385124 838 False 907.000000 907 86.190000 958 1796 1 chr4D.!!$F1 838
7 TraesCS4A01G493800 chr4B 572553704 572554543 839 False 907.000000 907 86.190000 958 1796 1 chr4B.!!$F1 838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 0.031994 GCTCCTCTGCTCCTCGAATC 59.968 60.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 2280 0.460987 GTCGAGCCCTGAATCCACAG 60.461 60.0 0.0 0.0 37.61 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.062971 GGCACCAATCATGTCCATCT 57.937 50.000 0.00 0.00 0.00 2.90
32 33 1.952296 GGCACCAATCATGTCCATCTC 59.048 52.381 0.00 0.00 0.00 2.75
33 34 1.952296 GCACCAATCATGTCCATCTCC 59.048 52.381 0.00 0.00 0.00 3.71
34 35 2.579873 CACCAATCATGTCCATCTCCC 58.420 52.381 0.00 0.00 0.00 4.30
35 36 2.174210 CACCAATCATGTCCATCTCCCT 59.826 50.000 0.00 0.00 0.00 4.20
36 37 2.441001 ACCAATCATGTCCATCTCCCTC 59.559 50.000 0.00 0.00 0.00 4.30
37 38 2.709934 CCAATCATGTCCATCTCCCTCT 59.290 50.000 0.00 0.00 0.00 3.69
38 39 3.244491 CCAATCATGTCCATCTCCCTCTC 60.244 52.174 0.00 0.00 0.00 3.20
39 40 2.854736 TCATGTCCATCTCCCTCTCA 57.145 50.000 0.00 0.00 0.00 3.27
40 41 2.392662 TCATGTCCATCTCCCTCTCAC 58.607 52.381 0.00 0.00 0.00 3.51
41 42 2.023598 TCATGTCCATCTCCCTCTCACT 60.024 50.000 0.00 0.00 0.00 3.41
42 43 1.857965 TGTCCATCTCCCTCTCACTG 58.142 55.000 0.00 0.00 0.00 3.66
43 44 1.118838 GTCCATCTCCCTCTCACTGG 58.881 60.000 0.00 0.00 0.00 4.00
44 45 1.010795 TCCATCTCCCTCTCACTGGA 58.989 55.000 0.00 0.00 0.00 3.86
45 46 1.577729 TCCATCTCCCTCTCACTGGAT 59.422 52.381 0.00 0.00 0.00 3.41
46 47 1.969923 CCATCTCCCTCTCACTGGATC 59.030 57.143 0.00 0.00 0.00 3.36
47 48 2.675583 CATCTCCCTCTCACTGGATCA 58.324 52.381 0.00 0.00 0.00 2.92
48 49 3.241156 CATCTCCCTCTCACTGGATCAT 58.759 50.000 0.00 0.00 0.00 2.45
49 50 2.956132 TCTCCCTCTCACTGGATCATC 58.044 52.381 0.00 0.00 0.00 2.92
50 51 1.612950 CTCCCTCTCACTGGATCATCG 59.387 57.143 0.00 0.00 0.00 3.84
51 52 0.678395 CCCTCTCACTGGATCATCGG 59.322 60.000 0.00 0.00 0.00 4.18
52 53 0.033228 CCTCTCACTGGATCATCGGC 59.967 60.000 0.00 0.00 0.00 5.54
53 54 1.039068 CTCTCACTGGATCATCGGCT 58.961 55.000 0.00 0.00 0.00 5.52
54 55 0.749049 TCTCACTGGATCATCGGCTG 59.251 55.000 0.00 0.00 0.00 4.85
55 56 0.249784 CTCACTGGATCATCGGCTGG 60.250 60.000 0.00 0.00 0.00 4.85
56 57 0.977627 TCACTGGATCATCGGCTGGT 60.978 55.000 0.00 0.00 0.00 4.00
57 58 0.531532 CACTGGATCATCGGCTGGTC 60.532 60.000 0.00 0.00 33.92 4.02
58 59 1.300465 CTGGATCATCGGCTGGTCG 60.300 63.158 0.00 0.00 35.68 4.79
59 60 2.029666 GGATCATCGGCTGGTCGG 59.970 66.667 0.00 0.00 35.68 4.79
60 61 2.663188 GATCATCGGCTGGTCGGC 60.663 66.667 0.00 0.00 0.00 5.54
61 62 3.157217 GATCATCGGCTGGTCGGCT 62.157 63.158 1.58 0.00 35.72 5.52
62 63 3.451556 ATCATCGGCTGGTCGGCTG 62.452 63.158 4.30 4.30 39.72 4.85
67 68 4.704833 GGCTGGTCGGCTGCTTCA 62.705 66.667 0.00 0.00 34.85 3.02
68 69 2.437359 GCTGGTCGGCTGCTTCAT 60.437 61.111 0.00 0.00 0.00 2.57
69 70 1.153369 GCTGGTCGGCTGCTTCATA 60.153 57.895 0.00 0.00 0.00 2.15
70 71 0.744414 GCTGGTCGGCTGCTTCATAA 60.744 55.000 0.00 0.00 0.00 1.90
71 72 1.959042 CTGGTCGGCTGCTTCATAAT 58.041 50.000 0.00 0.00 0.00 1.28
72 73 1.869767 CTGGTCGGCTGCTTCATAATC 59.130 52.381 0.00 0.00 0.00 1.75
73 74 1.486310 TGGTCGGCTGCTTCATAATCT 59.514 47.619 0.00 0.00 0.00 2.40
74 75 2.139118 GGTCGGCTGCTTCATAATCTC 58.861 52.381 0.00 0.00 0.00 2.75
75 76 2.139118 GTCGGCTGCTTCATAATCTCC 58.861 52.381 0.00 0.00 0.00 3.71
76 77 1.070758 TCGGCTGCTTCATAATCTCCC 59.929 52.381 0.00 0.00 0.00 4.30
77 78 1.202687 CGGCTGCTTCATAATCTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
78 79 2.225467 GGCTGCTTCATAATCTCCCAC 58.775 52.381 0.00 0.00 0.00 4.61
79 80 2.225467 GCTGCTTCATAATCTCCCACC 58.775 52.381 0.00 0.00 0.00 4.61
80 81 2.421952 GCTGCTTCATAATCTCCCACCA 60.422 50.000 0.00 0.00 0.00 4.17
81 82 3.474600 CTGCTTCATAATCTCCCACCAG 58.525 50.000 0.00 0.00 0.00 4.00
82 83 2.846206 TGCTTCATAATCTCCCACCAGT 59.154 45.455 0.00 0.00 0.00 4.00
83 84 3.118261 TGCTTCATAATCTCCCACCAGTC 60.118 47.826 0.00 0.00 0.00 3.51
84 85 3.722147 CTTCATAATCTCCCACCAGTCG 58.278 50.000 0.00 0.00 0.00 4.18
85 86 1.412710 TCATAATCTCCCACCAGTCGC 59.587 52.381 0.00 0.00 0.00 5.19
86 87 1.414181 CATAATCTCCCACCAGTCGCT 59.586 52.381 0.00 0.00 0.00 4.93
87 88 1.112113 TAATCTCCCACCAGTCGCTC 58.888 55.000 0.00 0.00 0.00 5.03
88 89 1.617947 AATCTCCCACCAGTCGCTCC 61.618 60.000 0.00 0.00 0.00 4.70
89 90 3.775654 CTCCCACCAGTCGCTCCC 61.776 72.222 0.00 0.00 0.00 4.30
90 91 4.631740 TCCCACCAGTCGCTCCCA 62.632 66.667 0.00 0.00 0.00 4.37
91 92 3.402681 CCCACCAGTCGCTCCCAT 61.403 66.667 0.00 0.00 0.00 4.00
92 93 2.063979 CCCACCAGTCGCTCCCATA 61.064 63.158 0.00 0.00 0.00 2.74
93 94 1.410850 CCCACCAGTCGCTCCCATAT 61.411 60.000 0.00 0.00 0.00 1.78
94 95 0.469917 CCACCAGTCGCTCCCATATT 59.530 55.000 0.00 0.00 0.00 1.28
95 96 1.134098 CCACCAGTCGCTCCCATATTT 60.134 52.381 0.00 0.00 0.00 1.40
96 97 1.942657 CACCAGTCGCTCCCATATTTG 59.057 52.381 0.00 0.00 0.00 2.32
97 98 1.134098 ACCAGTCGCTCCCATATTTGG 60.134 52.381 0.00 0.00 43.23 3.28
98 99 1.140852 CCAGTCGCTCCCATATTTGGA 59.859 52.381 3.41 0.00 46.92 3.53
99 100 2.421388 CCAGTCGCTCCCATATTTGGAA 60.421 50.000 3.41 0.00 46.92 3.53
100 101 2.614057 CAGTCGCTCCCATATTTGGAAC 59.386 50.000 3.41 0.00 46.92 3.62
101 102 2.505819 AGTCGCTCCCATATTTGGAACT 59.494 45.455 3.41 0.00 46.92 3.01
102 103 3.709653 AGTCGCTCCCATATTTGGAACTA 59.290 43.478 3.41 0.00 46.92 2.24
103 104 4.058817 GTCGCTCCCATATTTGGAACTAG 58.941 47.826 3.41 0.00 46.92 2.57
104 105 3.964688 TCGCTCCCATATTTGGAACTAGA 59.035 43.478 3.41 0.00 46.92 2.43
105 106 4.039245 TCGCTCCCATATTTGGAACTAGAG 59.961 45.833 3.41 2.83 46.92 2.43
106 107 4.068599 GCTCCCATATTTGGAACTAGAGC 58.931 47.826 12.20 12.20 46.92 4.09
107 108 4.310769 CTCCCATATTTGGAACTAGAGCG 58.689 47.826 3.41 0.00 46.92 5.03
108 109 2.808543 CCCATATTTGGAACTAGAGCGC 59.191 50.000 0.00 0.00 46.92 5.92
109 110 2.808543 CCATATTTGGAACTAGAGCGCC 59.191 50.000 2.29 0.00 46.92 6.53
110 111 3.495100 CCATATTTGGAACTAGAGCGCCT 60.495 47.826 2.29 3.28 46.92 5.52
111 112 2.317530 ATTTGGAACTAGAGCGCCTC 57.682 50.000 2.29 0.45 0.00 4.70
112 113 0.108804 TTTGGAACTAGAGCGCCTCG 60.109 55.000 2.29 0.00 35.36 4.63
125 126 3.061848 CCTCGCCGGCATTTGGTT 61.062 61.111 28.98 0.00 0.00 3.67
126 127 2.179018 CTCGCCGGCATTTGGTTG 59.821 61.111 28.98 7.38 0.00 3.77
127 128 3.340953 CTCGCCGGCATTTGGTTGG 62.341 63.158 28.98 6.54 0.00 3.77
128 129 4.433877 CGCCGGCATTTGGTTGGG 62.434 66.667 28.98 0.98 0.00 4.12
129 130 4.081185 GCCGGCATTTGGTTGGGG 62.081 66.667 24.80 0.00 0.00 4.96
130 131 4.081185 CCGGCATTTGGTTGGGGC 62.081 66.667 0.00 0.00 0.00 5.80
131 132 4.433877 CGGCATTTGGTTGGGGCG 62.434 66.667 0.00 0.00 42.72 6.13
132 133 3.310307 GGCATTTGGTTGGGGCGT 61.310 61.111 0.00 0.00 0.00 5.68
133 134 2.261361 GCATTTGGTTGGGGCGTC 59.739 61.111 0.00 0.00 0.00 5.19
134 135 2.566010 CATTTGGTTGGGGCGTCG 59.434 61.111 0.00 0.00 0.00 5.12
135 136 3.370231 ATTTGGTTGGGGCGTCGC 61.370 61.111 9.22 9.22 0.00 5.19
180 181 2.675519 CTTGACGAGCATCAGAGGC 58.324 57.895 0.00 0.00 33.17 4.70
181 182 0.108472 CTTGACGAGCATCAGAGGCA 60.108 55.000 10.23 0.00 33.17 4.75
182 183 0.108472 TTGACGAGCATCAGAGGCAG 60.108 55.000 10.23 5.44 33.17 4.85
183 184 0.967380 TGACGAGCATCAGAGGCAGA 60.967 55.000 10.23 0.00 33.17 4.26
184 185 0.388659 GACGAGCATCAGAGGCAGAT 59.611 55.000 10.23 0.00 33.17 2.90
185 186 0.829333 ACGAGCATCAGAGGCAGATT 59.171 50.000 10.23 0.00 33.17 2.40
186 187 1.209019 ACGAGCATCAGAGGCAGATTT 59.791 47.619 10.23 0.00 33.17 2.17
187 188 1.598132 CGAGCATCAGAGGCAGATTTG 59.402 52.381 10.23 0.00 33.17 2.32
188 189 2.641305 GAGCATCAGAGGCAGATTTGT 58.359 47.619 10.23 0.00 33.17 2.83
189 190 2.613133 GAGCATCAGAGGCAGATTTGTC 59.387 50.000 10.23 0.00 33.17 3.18
190 191 2.239150 AGCATCAGAGGCAGATTTGTCT 59.761 45.455 10.23 0.00 43.35 3.41
191 192 3.015327 GCATCAGAGGCAGATTTGTCTT 58.985 45.455 1.12 0.00 39.97 3.01
192 193 3.181499 GCATCAGAGGCAGATTTGTCTTG 60.181 47.826 1.12 0.00 39.97 3.02
193 194 3.777106 TCAGAGGCAGATTTGTCTTGT 57.223 42.857 0.00 0.00 39.97 3.16
194 195 4.090761 TCAGAGGCAGATTTGTCTTGTT 57.909 40.909 0.00 0.00 39.97 2.83
195 196 3.817084 TCAGAGGCAGATTTGTCTTGTTG 59.183 43.478 0.00 0.00 39.97 3.33
196 197 3.817084 CAGAGGCAGATTTGTCTTGTTGA 59.183 43.478 0.00 0.00 39.97 3.18
197 198 3.817647 AGAGGCAGATTTGTCTTGTTGAC 59.182 43.478 0.00 0.00 39.97 3.18
204 205 3.967715 GTCTTGTTGACGGCTCCC 58.032 61.111 0.00 0.00 35.81 4.30
205 206 1.671379 GTCTTGTTGACGGCTCCCC 60.671 63.158 0.00 0.00 35.81 4.81
206 207 1.841556 TCTTGTTGACGGCTCCCCT 60.842 57.895 0.00 0.00 0.00 4.79
207 208 1.376037 CTTGTTGACGGCTCCCCTC 60.376 63.158 0.00 0.00 0.00 4.30
208 209 1.831652 CTTGTTGACGGCTCCCCTCT 61.832 60.000 0.00 0.00 0.00 3.69
209 210 1.415672 TTGTTGACGGCTCCCCTCTT 61.416 55.000 0.00 0.00 0.00 2.85
210 211 1.376037 GTTGACGGCTCCCCTCTTG 60.376 63.158 0.00 0.00 0.00 3.02
211 212 3.254024 TTGACGGCTCCCCTCTTGC 62.254 63.158 0.00 0.00 0.00 4.01
212 213 4.475135 GACGGCTCCCCTCTTGCC 62.475 72.222 0.00 0.00 42.94 4.52
214 215 3.801997 CGGCTCCCCTCTTGCCAT 61.802 66.667 0.00 0.00 46.39 4.40
215 216 2.194326 GGCTCCCCTCTTGCCATC 59.806 66.667 0.00 0.00 45.46 3.51
216 217 2.194326 GCTCCCCTCTTGCCATCC 59.806 66.667 0.00 0.00 0.00 3.51
217 218 2.683465 GCTCCCCTCTTGCCATCCA 61.683 63.158 0.00 0.00 0.00 3.41
218 219 1.530771 CTCCCCTCTTGCCATCCAG 59.469 63.158 0.00 0.00 0.00 3.86
219 220 2.123982 CCCCTCTTGCCATCCAGC 60.124 66.667 0.00 0.00 0.00 4.85
220 221 2.687610 CCCCTCTTGCCATCCAGCT 61.688 63.158 0.00 0.00 0.00 4.24
221 222 1.153005 CCCTCTTGCCATCCAGCTC 60.153 63.158 0.00 0.00 0.00 4.09
222 223 1.633915 CCCTCTTGCCATCCAGCTCT 61.634 60.000 0.00 0.00 0.00 4.09
223 224 0.464013 CCTCTTGCCATCCAGCTCTG 60.464 60.000 0.00 0.00 0.00 3.35
224 225 1.077930 TCTTGCCATCCAGCTCTGC 60.078 57.895 0.00 0.00 0.00 4.26
225 226 1.077644 CTTGCCATCCAGCTCTGCT 60.078 57.895 0.00 0.00 40.77 4.24
226 227 1.077930 TTGCCATCCAGCTCTGCTC 60.078 57.895 0.00 0.00 36.40 4.26
227 228 2.203181 GCCATCCAGCTCTGCTCC 60.203 66.667 0.00 0.00 36.40 4.70
228 229 2.744243 GCCATCCAGCTCTGCTCCT 61.744 63.158 0.00 0.00 36.40 3.69
229 230 1.446791 CCATCCAGCTCTGCTCCTC 59.553 63.158 0.00 0.00 36.40 3.71
230 231 1.049855 CCATCCAGCTCTGCTCCTCT 61.050 60.000 0.00 0.00 36.40 3.69
231 232 0.105224 CATCCAGCTCTGCTCCTCTG 59.895 60.000 0.00 0.00 36.40 3.35
232 233 1.688269 ATCCAGCTCTGCTCCTCTGC 61.688 60.000 0.00 0.00 36.40 4.26
233 234 2.360767 CCAGCTCTGCTCCTCTGCT 61.361 63.158 0.00 0.00 36.40 4.24
234 235 1.142314 CAGCTCTGCTCCTCTGCTC 59.858 63.158 0.00 0.00 36.40 4.26
235 236 2.059786 AGCTCTGCTCCTCTGCTCC 61.060 63.158 0.00 0.00 30.62 4.70
236 237 2.059786 GCTCTGCTCCTCTGCTCCT 61.060 63.158 0.00 0.00 0.00 3.69
237 238 2.019897 GCTCTGCTCCTCTGCTCCTC 62.020 65.000 0.00 0.00 0.00 3.71
238 239 1.727511 CTCTGCTCCTCTGCTCCTCG 61.728 65.000 0.00 0.00 0.00 4.63
239 240 1.752310 CTGCTCCTCTGCTCCTCGA 60.752 63.158 0.00 0.00 0.00 4.04
240 241 1.304464 TGCTCCTCTGCTCCTCGAA 60.304 57.895 0.00 0.00 0.00 3.71
241 242 0.685785 TGCTCCTCTGCTCCTCGAAT 60.686 55.000 0.00 0.00 0.00 3.34
242 243 0.031994 GCTCCTCTGCTCCTCGAATC 59.968 60.000 0.00 0.00 0.00 2.52
243 244 1.397672 CTCCTCTGCTCCTCGAATCA 58.602 55.000 0.00 0.00 0.00 2.57
244 245 1.753649 CTCCTCTGCTCCTCGAATCAA 59.246 52.381 0.00 0.00 0.00 2.57
245 246 2.364970 CTCCTCTGCTCCTCGAATCAAT 59.635 50.000 0.00 0.00 0.00 2.57
246 247 3.566351 TCCTCTGCTCCTCGAATCAATA 58.434 45.455 0.00 0.00 0.00 1.90
247 248 3.319405 TCCTCTGCTCCTCGAATCAATAC 59.681 47.826 0.00 0.00 0.00 1.89
248 249 3.320541 CCTCTGCTCCTCGAATCAATACT 59.679 47.826 0.00 0.00 0.00 2.12
249 250 4.545610 CTCTGCTCCTCGAATCAATACTC 58.454 47.826 0.00 0.00 0.00 2.59
250 251 3.954258 TCTGCTCCTCGAATCAATACTCA 59.046 43.478 0.00 0.00 0.00 3.41
251 252 4.046938 TGCTCCTCGAATCAATACTCAC 57.953 45.455 0.00 0.00 0.00 3.51
252 253 3.181475 TGCTCCTCGAATCAATACTCACC 60.181 47.826 0.00 0.00 0.00 4.02
253 254 3.633235 CTCCTCGAATCAATACTCACCG 58.367 50.000 0.00 0.00 0.00 4.94
254 255 3.284617 TCCTCGAATCAATACTCACCGA 58.715 45.455 0.00 0.00 0.00 4.69
255 256 3.066342 TCCTCGAATCAATACTCACCGAC 59.934 47.826 0.00 0.00 0.00 4.79
256 257 3.036633 CTCGAATCAATACTCACCGACG 58.963 50.000 0.00 0.00 0.00 5.12
257 258 2.117137 CGAATCAATACTCACCGACGG 58.883 52.381 13.61 13.61 0.00 4.79
258 259 2.223409 CGAATCAATACTCACCGACGGA 60.223 50.000 23.38 0.00 0.00 4.69
259 260 3.732774 CGAATCAATACTCACCGACGGAA 60.733 47.826 23.38 7.25 0.00 4.30
260 261 4.369182 GAATCAATACTCACCGACGGAAT 58.631 43.478 23.38 5.04 0.00 3.01
261 262 3.159353 TCAATACTCACCGACGGAATG 57.841 47.619 23.38 9.78 0.00 2.67
262 263 1.593006 CAATACTCACCGACGGAATGC 59.407 52.381 23.38 0.00 0.00 3.56
263 264 1.112113 ATACTCACCGACGGAATGCT 58.888 50.000 23.38 0.00 0.00 3.79
264 265 0.454600 TACTCACCGACGGAATGCTC 59.545 55.000 23.38 0.00 0.00 4.26
265 266 1.874019 CTCACCGACGGAATGCTCG 60.874 63.158 23.38 0.00 0.00 5.03
270 271 4.814294 GACGGAATGCTCGGCGGT 62.814 66.667 7.21 0.00 0.00 5.68
279 280 4.514577 CTCGGCGGTGCGGATTCT 62.515 66.667 7.21 0.00 37.27 2.40
280 281 4.812476 TCGGCGGTGCGGATTCTG 62.812 66.667 7.21 0.00 33.15 3.02
282 283 3.195698 GGCGGTGCGGATTCTGTC 61.196 66.667 0.00 0.00 0.00 3.51
283 284 3.554692 GCGGTGCGGATTCTGTCG 61.555 66.667 0.00 0.00 0.00 4.35
284 285 2.180769 CGGTGCGGATTCTGTCGA 59.819 61.111 0.00 0.00 0.00 4.20
285 286 1.226974 CGGTGCGGATTCTGTCGAT 60.227 57.895 0.00 0.00 0.00 3.59
286 287 1.209275 CGGTGCGGATTCTGTCGATC 61.209 60.000 0.00 0.00 0.00 3.69
287 288 0.103208 GGTGCGGATTCTGTCGATCT 59.897 55.000 0.00 0.00 0.00 2.75
288 289 1.203928 GTGCGGATTCTGTCGATCTG 58.796 55.000 0.00 0.00 0.00 2.90
289 290 0.103026 TGCGGATTCTGTCGATCTGG 59.897 55.000 0.00 0.00 0.00 3.86
290 291 0.385751 GCGGATTCTGTCGATCTGGA 59.614 55.000 0.00 0.00 0.00 3.86
291 292 1.000283 GCGGATTCTGTCGATCTGGAT 60.000 52.381 0.00 0.00 0.00 3.41
292 293 2.546795 GCGGATTCTGTCGATCTGGATT 60.547 50.000 0.00 0.00 0.00 3.01
293 294 3.312828 CGGATTCTGTCGATCTGGATTC 58.687 50.000 0.00 0.00 0.00 2.52
294 295 3.658709 GGATTCTGTCGATCTGGATTCC 58.341 50.000 0.00 0.00 0.00 3.01
295 296 3.323403 GGATTCTGTCGATCTGGATTCCT 59.677 47.826 3.95 0.00 0.00 3.36
296 297 3.808466 TTCTGTCGATCTGGATTCCTG 57.192 47.619 3.95 3.59 0.00 3.86
297 298 2.739943 TCTGTCGATCTGGATTCCTGT 58.260 47.619 3.95 0.00 0.00 4.00
298 299 2.690497 TCTGTCGATCTGGATTCCTGTC 59.310 50.000 3.95 3.75 0.00 3.51
299 300 2.692557 CTGTCGATCTGGATTCCTGTCT 59.307 50.000 3.95 0.00 0.00 3.41
300 301 3.099905 TGTCGATCTGGATTCCTGTCTT 58.900 45.455 3.95 0.00 0.00 3.01
301 302 3.118992 TGTCGATCTGGATTCCTGTCTTG 60.119 47.826 3.95 1.07 0.00 3.02
302 303 3.131223 GTCGATCTGGATTCCTGTCTTGA 59.869 47.826 3.95 3.21 0.00 3.02
303 304 3.963374 TCGATCTGGATTCCTGTCTTGAT 59.037 43.478 3.95 0.00 0.00 2.57
304 305 4.056740 CGATCTGGATTCCTGTCTTGATG 58.943 47.826 3.95 0.00 0.00 3.07
305 306 4.202192 CGATCTGGATTCCTGTCTTGATGA 60.202 45.833 3.95 0.00 0.00 2.92
306 307 5.678583 GATCTGGATTCCTGTCTTGATGAA 58.321 41.667 3.95 0.00 0.00 2.57
307 308 5.503634 TCTGGATTCCTGTCTTGATGAAA 57.496 39.130 3.95 0.00 0.00 2.69
308 309 5.494724 TCTGGATTCCTGTCTTGATGAAAG 58.505 41.667 3.95 0.00 37.22 2.62
309 310 4.012374 TGGATTCCTGTCTTGATGAAAGC 58.988 43.478 3.95 0.00 35.69 3.51
310 311 3.379688 GGATTCCTGTCTTGATGAAAGCC 59.620 47.826 0.00 0.00 35.69 4.35
311 312 3.507162 TTCCTGTCTTGATGAAAGCCA 57.493 42.857 0.00 0.00 35.69 4.75
312 313 3.726557 TCCTGTCTTGATGAAAGCCAT 57.273 42.857 0.00 0.00 38.43 4.40
313 314 4.842531 TCCTGTCTTGATGAAAGCCATA 57.157 40.909 0.00 0.00 35.17 2.74
314 315 5.178096 TCCTGTCTTGATGAAAGCCATAA 57.822 39.130 0.00 0.00 35.17 1.90
315 316 5.188434 TCCTGTCTTGATGAAAGCCATAAG 58.812 41.667 0.00 0.00 35.17 1.73
316 317 5.045651 TCCTGTCTTGATGAAAGCCATAAGA 60.046 40.000 0.00 0.00 35.17 2.10
317 318 5.649395 CCTGTCTTGATGAAAGCCATAAGAA 59.351 40.000 0.00 0.00 35.17 2.52
318 319 6.404074 CCTGTCTTGATGAAAGCCATAAGAAC 60.404 42.308 0.00 0.00 35.17 3.01
319 320 6.240894 TGTCTTGATGAAAGCCATAAGAACT 58.759 36.000 0.00 0.00 35.17 3.01
320 321 7.394016 TGTCTTGATGAAAGCCATAAGAACTA 58.606 34.615 0.00 0.00 35.17 2.24
321 322 7.882791 TGTCTTGATGAAAGCCATAAGAACTAA 59.117 33.333 0.00 0.00 35.17 2.24
322 323 8.897752 GTCTTGATGAAAGCCATAAGAACTAAT 58.102 33.333 0.00 0.00 35.17 1.73
325 326 9.905713 TTGATGAAAGCCATAAGAACTAATACT 57.094 29.630 0.00 0.00 35.17 2.12
332 333 8.664211 AGCCATAAGAACTAATACTACTTTGC 57.336 34.615 0.00 0.00 0.00 3.68
333 334 8.265055 AGCCATAAGAACTAATACTACTTTGCA 58.735 33.333 0.00 0.00 0.00 4.08
334 335 8.889717 GCCATAAGAACTAATACTACTTTGCAA 58.110 33.333 0.00 0.00 0.00 4.08
339 340 9.780186 AAGAACTAATACTACTTTGCAACTCTT 57.220 29.630 0.00 0.00 0.00 2.85
340 341 9.780186 AGAACTAATACTACTTTGCAACTCTTT 57.220 29.630 0.00 0.00 0.00 2.52
342 343 8.240883 ACTAATACTACTTTGCAACTCTTTCG 57.759 34.615 0.00 0.00 0.00 3.46
343 344 8.086522 ACTAATACTACTTTGCAACTCTTTCGA 58.913 33.333 0.00 0.00 0.00 3.71
344 345 7.907214 AATACTACTTTGCAACTCTTTCGAT 57.093 32.000 0.00 0.00 0.00 3.59
345 346 7.907214 ATACTACTTTGCAACTCTTTCGATT 57.093 32.000 0.00 0.00 0.00 3.34
346 347 5.990408 ACTACTTTGCAACTCTTTCGATTG 58.010 37.500 0.00 0.00 0.00 2.67
347 348 4.900635 ACTTTGCAACTCTTTCGATTGT 57.099 36.364 0.00 0.00 0.00 2.71
348 349 4.601019 ACTTTGCAACTCTTTCGATTGTG 58.399 39.130 0.00 0.00 0.00 3.33
349 350 2.686558 TGCAACTCTTTCGATTGTGC 57.313 45.000 0.00 0.00 0.00 4.57
350 351 1.266718 TGCAACTCTTTCGATTGTGCC 59.733 47.619 0.00 0.00 0.00 5.01
351 352 1.401539 GCAACTCTTTCGATTGTGCCC 60.402 52.381 0.00 0.00 0.00 5.36
352 353 2.154462 CAACTCTTTCGATTGTGCCCT 58.846 47.619 0.00 0.00 0.00 5.19
353 354 2.554032 CAACTCTTTCGATTGTGCCCTT 59.446 45.455 0.00 0.00 0.00 3.95
354 355 2.863809 ACTCTTTCGATTGTGCCCTTT 58.136 42.857 0.00 0.00 0.00 3.11
355 356 3.222603 ACTCTTTCGATTGTGCCCTTTT 58.777 40.909 0.00 0.00 0.00 2.27
356 357 3.636764 ACTCTTTCGATTGTGCCCTTTTT 59.363 39.130 0.00 0.00 0.00 1.94
357 358 3.976169 TCTTTCGATTGTGCCCTTTTTG 58.024 40.909 0.00 0.00 0.00 2.44
358 359 2.147436 TTCGATTGTGCCCTTTTTGC 57.853 45.000 0.00 0.00 0.00 3.68
359 360 1.035923 TCGATTGTGCCCTTTTTGCA 58.964 45.000 0.00 0.00 36.12 4.08
360 361 1.000385 TCGATTGTGCCCTTTTTGCAG 60.000 47.619 0.00 0.00 39.87 4.41
361 362 1.000385 CGATTGTGCCCTTTTTGCAGA 60.000 47.619 0.00 0.00 39.87 4.26
362 363 2.680577 GATTGTGCCCTTTTTGCAGAG 58.319 47.619 0.00 0.00 39.87 3.35
363 364 1.774110 TTGTGCCCTTTTTGCAGAGA 58.226 45.000 0.00 0.00 39.87 3.10
364 365 1.321474 TGTGCCCTTTTTGCAGAGAG 58.679 50.000 0.00 0.00 39.87 3.20
365 366 1.322442 GTGCCCTTTTTGCAGAGAGT 58.678 50.000 0.00 0.00 39.87 3.24
366 367 2.158682 TGTGCCCTTTTTGCAGAGAGTA 60.159 45.455 0.00 0.00 39.87 2.59
367 368 2.226674 GTGCCCTTTTTGCAGAGAGTAC 59.773 50.000 0.00 0.00 39.87 2.73
368 369 2.106511 TGCCCTTTTTGCAGAGAGTACT 59.893 45.455 0.00 0.00 34.05 2.73
369 370 3.326588 TGCCCTTTTTGCAGAGAGTACTA 59.673 43.478 0.00 0.00 34.05 1.82
370 371 4.019321 TGCCCTTTTTGCAGAGAGTACTAT 60.019 41.667 0.00 0.00 34.05 2.12
371 372 4.333926 GCCCTTTTTGCAGAGAGTACTATG 59.666 45.833 0.00 0.00 38.25 2.23
372 373 4.878397 CCCTTTTTGCAGAGAGTACTATGG 59.122 45.833 0.00 0.00 36.07 2.74
373 374 5.338381 CCCTTTTTGCAGAGAGTACTATGGA 60.338 44.000 0.00 0.00 36.07 3.41
374 375 6.352516 CCTTTTTGCAGAGAGTACTATGGAT 58.647 40.000 0.00 0.00 35.80 3.41
375 376 6.825721 CCTTTTTGCAGAGAGTACTATGGATT 59.174 38.462 0.00 0.00 35.80 3.01
376 377 7.987458 CCTTTTTGCAGAGAGTACTATGGATTA 59.013 37.037 0.00 0.00 35.80 1.75
377 378 9.553064 CTTTTTGCAGAGAGTACTATGGATTAT 57.447 33.333 0.00 0.00 35.80 1.28
378 379 9.547753 TTTTTGCAGAGAGTACTATGGATTATC 57.452 33.333 0.00 0.00 35.80 1.75
379 380 6.502136 TGCAGAGAGTACTATGGATTATCG 57.498 41.667 0.00 0.00 36.07 2.92
380 381 6.238648 TGCAGAGAGTACTATGGATTATCGA 58.761 40.000 0.00 0.00 36.07 3.59
381 382 6.887002 TGCAGAGAGTACTATGGATTATCGAT 59.113 38.462 2.16 2.16 36.07 3.59
382 383 7.394641 TGCAGAGAGTACTATGGATTATCGATT 59.605 37.037 1.71 0.00 36.07 3.34
383 384 8.894731 GCAGAGAGTACTATGGATTATCGATTA 58.105 37.037 1.71 0.00 36.07 1.75
402 403 8.842358 TCGATTAATATTAACCCTTGGATCAC 57.158 34.615 10.07 0.00 0.00 3.06
403 404 7.881232 TCGATTAATATTAACCCTTGGATCACC 59.119 37.037 10.07 0.00 0.00 4.02
404 405 7.663905 CGATTAATATTAACCCTTGGATCACCA 59.336 37.037 10.07 0.00 45.34 4.17
417 418 5.404466 TGGATCACCAAAAATGAATGGTC 57.596 39.130 0.00 0.00 46.94 4.02
418 419 4.837298 TGGATCACCAAAAATGAATGGTCA 59.163 37.500 0.00 0.00 46.94 4.02
419 420 5.306419 TGGATCACCAAAAATGAATGGTCAA 59.694 36.000 0.00 0.00 46.94 3.18
420 421 6.013553 TGGATCACCAAAAATGAATGGTCAAT 60.014 34.615 0.00 0.00 46.94 2.57
421 422 7.179872 TGGATCACCAAAAATGAATGGTCAATA 59.820 33.333 0.00 0.00 46.94 1.90
422 423 8.206189 GGATCACCAAAAATGAATGGTCAATAT 58.794 33.333 0.00 0.00 46.94 1.28
423 424 9.603921 GATCACCAAAAATGAATGGTCAATATT 57.396 29.630 0.00 0.00 46.94 1.28
424 425 9.962809 ATCACCAAAAATGAATGGTCAATATTT 57.037 25.926 0.00 0.00 46.94 1.40
437 438 8.777865 ATGGTCAATATTTATCTGATGTACCG 57.222 34.615 0.00 0.00 0.00 4.02
438 439 7.732025 TGGTCAATATTTATCTGATGTACCGT 58.268 34.615 0.00 0.00 0.00 4.83
439 440 8.862085 TGGTCAATATTTATCTGATGTACCGTA 58.138 33.333 0.00 0.00 0.00 4.02
440 441 9.701098 GGTCAATATTTATCTGATGTACCGTAA 57.299 33.333 0.00 0.00 0.00 3.18
446 447 8.658499 ATTTATCTGATGTACCGTAAAAGGTC 57.342 34.615 0.00 0.00 44.68 3.85
447 448 5.934402 ATCTGATGTACCGTAAAAGGTCT 57.066 39.130 0.00 0.00 44.68 3.85
448 449 5.320549 TCTGATGTACCGTAAAAGGTCTC 57.679 43.478 0.00 0.00 44.68 3.36
449 450 4.768448 TCTGATGTACCGTAAAAGGTCTCA 59.232 41.667 0.00 0.00 44.68 3.27
480 481 9.927668 TTAATTGGATTTGGATTCTTCAGTTTC 57.072 29.630 0.00 0.00 0.00 2.78
506 507 7.754027 CACCTGATTTTCAACTCTTCATTCATC 59.246 37.037 0.00 0.00 0.00 2.92
507 508 7.449395 ACCTGATTTTCAACTCTTCATTCATCA 59.551 33.333 0.00 0.00 0.00 3.07
508 509 8.467598 CCTGATTTTCAACTCTTCATTCATCAT 58.532 33.333 0.00 0.00 0.00 2.45
554 555 5.182950 TGTCGTGTCAAAATATGCCAAAGAT 59.817 36.000 0.00 0.00 0.00 2.40
567 569 5.273674 TGCCAAAGATTTGAATTGTGTCA 57.726 34.783 6.87 0.00 40.55 3.58
738 747 1.004745 TGGAAACCCATGAGCCTTCTC 59.995 52.381 0.00 0.00 39.78 2.87
745 754 1.137675 CCATGAGCCTTCTCGTCATCA 59.862 52.381 0.00 0.00 42.26 3.07
751 760 1.066303 GCCTTCTCGTCATCATCTCGT 59.934 52.381 0.00 0.00 0.00 4.18
753 762 2.356069 CCTTCTCGTCATCATCTCGTCA 59.644 50.000 0.00 0.00 0.00 4.35
950 959 1.669437 TCGCAACAACGGCATAGCA 60.669 52.632 0.00 0.00 0.00 3.49
987 1052 1.004745 CAAGTGCCCAAGATACCACCT 59.995 52.381 0.00 0.00 0.00 4.00
1226 1297 1.338337 CTCCGCGGAGATGTATGACTT 59.662 52.381 45.28 0.00 44.53 3.01
1267 1338 3.269381 ACCCCTTCCTTGCATGAATAAGA 59.731 43.478 0.00 0.00 0.00 2.10
1299 1374 2.095059 GTGTTCTGGCACATTCATGGAC 60.095 50.000 0.00 0.00 38.20 4.02
1302 1377 1.378382 TGGCACATTCATGGACGGG 60.378 57.895 0.00 0.00 0.00 5.28
1683 1791 1.526887 GATCCCGGATCAGCAACCA 59.473 57.895 20.82 0.00 38.77 3.67
1688 1796 1.746615 CGGATCAGCAACCACCTGG 60.747 63.158 0.00 0.00 42.17 4.45
1769 1878 2.299993 TGCTGAGTCCGCTGAATAAG 57.700 50.000 8.09 0.00 0.00 1.73
1780 1889 2.158449 CGCTGAATAAGGATCGAATGCC 59.842 50.000 0.00 0.00 0.00 4.40
1781 1890 3.141398 GCTGAATAAGGATCGAATGCCA 58.859 45.455 0.00 0.00 0.00 4.92
1786 1895 1.972872 AAGGATCGAATGCCATGGAC 58.027 50.000 18.40 7.64 0.00 4.02
1855 1964 8.255206 TGTTATTAGCTTTAATTCTGGTCGAGA 58.745 33.333 0.00 0.00 0.00 4.04
1869 1978 8.988064 TTCTGGTCGAGATGCTAATAATATTC 57.012 34.615 0.00 0.00 0.00 1.75
1937 2059 4.633565 GGTCCTCTTGATCTTGCTTGTTAG 59.366 45.833 0.00 0.00 0.00 2.34
1970 2099 1.512926 AGTCGATGGTCAACTTGTGC 58.487 50.000 0.00 0.00 0.00 4.57
1974 2103 1.002900 CGATGGTCAACTTGTGCGTTT 60.003 47.619 0.00 0.00 0.00 3.60
2041 2171 5.783111 AGTTTGACTGTTTGAGTGCTTTTT 58.217 33.333 0.00 0.00 33.83 1.94
2044 2174 4.985413 TGACTGTTTGAGTGCTTTTTCTG 58.015 39.130 0.00 0.00 33.83 3.02
2070 2200 3.181459 TGTCGGAGTGAACAAATCAGGAA 60.181 43.478 0.00 0.00 39.19 3.36
2071 2201 4.003648 GTCGGAGTGAACAAATCAGGAAT 58.996 43.478 0.00 0.00 39.19 3.01
2072 2202 5.175859 GTCGGAGTGAACAAATCAGGAATA 58.824 41.667 0.00 0.00 39.19 1.75
2073 2203 5.817816 GTCGGAGTGAACAAATCAGGAATAT 59.182 40.000 0.00 0.00 39.19 1.28
2140 2272 1.396543 CGAGCGCTACGTCTTGTCAC 61.397 60.000 11.50 0.00 0.00 3.67
2142 2274 0.243907 AGCGCTACGTCTTGTCACAT 59.756 50.000 8.99 0.00 0.00 3.21
2147 2279 3.059868 CGCTACGTCTTGTCACATGTTTT 60.060 43.478 0.00 0.00 0.00 2.43
2148 2280 4.455124 GCTACGTCTTGTCACATGTTTTC 58.545 43.478 0.00 0.00 0.00 2.29
2154 2286 4.335315 GTCTTGTCACATGTTTTCTGTGGA 59.665 41.667 0.00 0.00 43.33 4.02
2184 2316 1.196808 CGACGCATACAAAAGCAAGGT 59.803 47.619 0.00 0.00 0.00 3.50
2186 2318 1.335872 ACGCATACAAAAGCAAGGTGC 60.336 47.619 0.00 0.00 45.46 5.01
2189 2321 0.887933 ATACAAAAGCAAGGTGCCGG 59.112 50.000 0.00 0.00 46.52 6.13
2214 2346 0.037790 ACGCTGCTCAAAGAGGTCTC 60.038 55.000 0.00 0.00 0.00 3.36
2242 2374 2.352422 TGGCAGCTCATGTCACCC 59.648 61.111 0.00 0.00 39.05 4.61
2295 2427 7.230309 AGTTGAAGAGAAAATCCCTGAAGAAAG 59.770 37.037 0.00 0.00 0.00 2.62
2297 2429 7.290061 TGAAGAGAAAATCCCTGAAGAAAGAA 58.710 34.615 0.00 0.00 0.00 2.52
2298 2430 7.779798 TGAAGAGAAAATCCCTGAAGAAAGAAA 59.220 33.333 0.00 0.00 0.00 2.52
2299 2431 7.517614 AGAGAAAATCCCTGAAGAAAGAAAC 57.482 36.000 0.00 0.00 0.00 2.78
2300 2432 7.062957 AGAGAAAATCCCTGAAGAAAGAAACA 58.937 34.615 0.00 0.00 0.00 2.83
2301 2433 7.727634 AGAGAAAATCCCTGAAGAAAGAAACAT 59.272 33.333 0.00 0.00 0.00 2.71
2302 2434 7.664758 AGAAAATCCCTGAAGAAAGAAACATG 58.335 34.615 0.00 0.00 0.00 3.21
2303 2435 6.983906 AAATCCCTGAAGAAAGAAACATGT 57.016 33.333 0.00 0.00 0.00 3.21
2304 2436 5.972107 ATCCCTGAAGAAAGAAACATGTG 57.028 39.130 0.00 0.00 0.00 3.21
2305 2437 4.792068 TCCCTGAAGAAAGAAACATGTGT 58.208 39.130 0.00 0.00 0.00 3.72
2391 2663 4.946160 TGGATTCCAGTAAGGTTTGGAT 57.054 40.909 0.00 0.00 42.73 3.41
2397 2669 3.055094 TCCAGTAAGGTTTGGATGCTCTC 60.055 47.826 0.00 0.00 38.53 3.20
2437 2743 5.819991 TCTTTCATCTTCAATGCCCTACTT 58.180 37.500 0.00 0.00 0.00 2.24
2452 2758 6.245408 TGCCCTACTTGTATTTCTGAACATT 58.755 36.000 0.00 0.00 0.00 2.71
2455 2761 8.736244 GCCCTACTTGTATTTCTGAACATTAAA 58.264 33.333 0.00 0.00 0.00 1.52
2495 2801 7.604657 ATCTAGATTTCGATTCCAGTAAGGT 57.395 36.000 0.00 0.00 39.02 3.50
2496 2802 7.419711 TCTAGATTTCGATTCCAGTAAGGTT 57.580 36.000 0.00 0.00 39.02 3.50
2497 2803 7.848128 TCTAGATTTCGATTCCAGTAAGGTTT 58.152 34.615 0.00 0.00 39.02 3.27
2498 2804 8.319146 TCTAGATTTCGATTCCAGTAAGGTTTT 58.681 33.333 0.00 0.00 39.02 2.43
2499 2805 7.145932 AGATTTCGATTCCAGTAAGGTTTTG 57.854 36.000 0.00 0.00 39.02 2.44
2500 2806 6.940298 AGATTTCGATTCCAGTAAGGTTTTGA 59.060 34.615 0.00 0.00 39.02 2.69
2501 2807 5.934935 TTCGATTCCAGTAAGGTTTTGAC 57.065 39.130 0.00 0.00 39.02 3.18
2502 2808 3.991773 TCGATTCCAGTAAGGTTTTGACG 59.008 43.478 0.00 0.00 39.02 4.35
2503 2809 3.424433 CGATTCCAGTAAGGTTTTGACGC 60.424 47.826 0.00 0.00 39.02 5.19
2504 2810 2.922740 TCCAGTAAGGTTTTGACGCT 57.077 45.000 0.00 0.00 39.02 5.07
2505 2811 2.762745 TCCAGTAAGGTTTTGACGCTC 58.237 47.619 0.00 0.00 39.02 5.03
2506 2812 2.367567 TCCAGTAAGGTTTTGACGCTCT 59.632 45.455 0.00 0.00 39.02 4.09
2507 2813 2.737252 CCAGTAAGGTTTTGACGCTCTC 59.263 50.000 0.00 0.00 0.00 3.20
2508 2814 2.737252 CAGTAAGGTTTTGACGCTCTCC 59.263 50.000 0.00 0.00 0.00 3.71
2509 2815 2.074576 GTAAGGTTTTGACGCTCTCCC 58.925 52.381 0.00 0.00 0.00 4.30
2510 2816 0.765510 AAGGTTTTGACGCTCTCCCT 59.234 50.000 0.00 0.00 0.00 4.20
2511 2817 0.035458 AGGTTTTGACGCTCTCCCTG 59.965 55.000 0.00 0.00 0.00 4.45
2512 2818 0.955919 GGTTTTGACGCTCTCCCTGG 60.956 60.000 0.00 0.00 0.00 4.45
2513 2819 0.250338 GTTTTGACGCTCTCCCTGGT 60.250 55.000 0.00 0.00 0.00 4.00
2521 2827 0.398318 GCTCTCCCTGGTGTTCAGTT 59.602 55.000 0.00 0.00 41.83 3.16
2529 3601 3.070018 CCTGGTGTTCAGTTTCTAGCTG 58.930 50.000 0.00 0.00 41.83 4.24
2533 3605 3.134458 GTGTTCAGTTTCTAGCTGTGCT 58.866 45.455 0.00 0.00 43.41 4.40
2600 3672 2.906691 ATTCTCAGATCGAAGGGCAG 57.093 50.000 0.00 0.00 0.00 4.85
2662 3734 8.241367 TCATTAGCATTGTTATGATGATGATGC 58.759 33.333 6.72 0.00 43.74 3.91
2743 3818 4.893608 AGAGAAAGAAGAAGAGGTTCAGC 58.106 43.478 0.00 0.00 34.82 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.511600 GATTGGTGCCCTCGTCGG 60.512 66.667 0.00 0.00 0.00 4.79
5 6 1.153369 ATGATTGGTGCCCTCGTCG 60.153 57.895 0.00 0.00 0.00 5.12
6 7 0.392998 ACATGATTGGTGCCCTCGTC 60.393 55.000 0.00 0.00 0.00 4.20
7 8 0.392998 GACATGATTGGTGCCCTCGT 60.393 55.000 0.00 0.00 0.00 4.18
8 9 1.097547 GGACATGATTGGTGCCCTCG 61.098 60.000 0.00 0.00 0.00 4.63
9 10 0.034186 TGGACATGATTGGTGCCCTC 60.034 55.000 0.00 0.00 0.00 4.30
10 11 0.632835 ATGGACATGATTGGTGCCCT 59.367 50.000 0.00 0.00 0.00 5.19
11 12 1.035139 GATGGACATGATTGGTGCCC 58.965 55.000 0.00 0.00 0.00 5.36
12 13 1.952296 GAGATGGACATGATTGGTGCC 59.048 52.381 0.00 0.00 0.00 5.01
13 14 1.952296 GGAGATGGACATGATTGGTGC 59.048 52.381 0.00 0.00 0.00 5.01
14 15 2.174210 AGGGAGATGGACATGATTGGTG 59.826 50.000 0.00 0.00 0.00 4.17
15 16 2.441001 GAGGGAGATGGACATGATTGGT 59.559 50.000 0.00 0.00 0.00 3.67
16 17 2.709934 AGAGGGAGATGGACATGATTGG 59.290 50.000 0.00 0.00 0.00 3.16
17 18 3.390311 TGAGAGGGAGATGGACATGATTG 59.610 47.826 0.00 0.00 0.00 2.67
18 19 3.390639 GTGAGAGGGAGATGGACATGATT 59.609 47.826 0.00 0.00 0.00 2.57
19 20 2.971330 GTGAGAGGGAGATGGACATGAT 59.029 50.000 0.00 0.00 0.00 2.45
20 21 2.023598 AGTGAGAGGGAGATGGACATGA 60.024 50.000 0.00 0.00 0.00 3.07
21 22 2.102757 CAGTGAGAGGGAGATGGACATG 59.897 54.545 0.00 0.00 0.00 3.21
22 23 2.396608 CAGTGAGAGGGAGATGGACAT 58.603 52.381 0.00 0.00 0.00 3.06
23 24 1.620798 CCAGTGAGAGGGAGATGGACA 60.621 57.143 0.00 0.00 0.00 4.02
24 25 1.118838 CCAGTGAGAGGGAGATGGAC 58.881 60.000 0.00 0.00 0.00 4.02
25 26 1.010795 TCCAGTGAGAGGGAGATGGA 58.989 55.000 0.00 0.00 34.54 3.41
26 27 1.969923 GATCCAGTGAGAGGGAGATGG 59.030 57.143 0.00 0.00 36.45 3.51
27 28 2.675583 TGATCCAGTGAGAGGGAGATG 58.324 52.381 0.00 0.00 36.45 2.90
28 29 3.509442 GATGATCCAGTGAGAGGGAGAT 58.491 50.000 0.00 0.00 36.45 2.75
29 30 2.751143 CGATGATCCAGTGAGAGGGAGA 60.751 54.545 0.00 0.00 36.45 3.71
30 31 1.612950 CGATGATCCAGTGAGAGGGAG 59.387 57.143 0.00 0.00 36.45 4.30
31 32 1.697284 CGATGATCCAGTGAGAGGGA 58.303 55.000 0.00 0.00 37.64 4.20
32 33 0.678395 CCGATGATCCAGTGAGAGGG 59.322 60.000 0.00 0.00 0.00 4.30
33 34 0.033228 GCCGATGATCCAGTGAGAGG 59.967 60.000 0.00 0.00 0.00 3.69
34 35 1.039068 AGCCGATGATCCAGTGAGAG 58.961 55.000 0.00 0.00 0.00 3.20
35 36 0.749049 CAGCCGATGATCCAGTGAGA 59.251 55.000 0.00 0.00 0.00 3.27
36 37 0.249784 CCAGCCGATGATCCAGTGAG 60.250 60.000 0.00 0.00 0.00 3.51
37 38 0.977627 ACCAGCCGATGATCCAGTGA 60.978 55.000 0.00 0.00 0.00 3.41
38 39 0.531532 GACCAGCCGATGATCCAGTG 60.532 60.000 0.00 0.00 0.00 3.66
39 40 1.826024 GACCAGCCGATGATCCAGT 59.174 57.895 0.00 0.00 0.00 4.00
40 41 1.300465 CGACCAGCCGATGATCCAG 60.300 63.158 0.00 0.00 0.00 3.86
41 42 2.796193 CCGACCAGCCGATGATCCA 61.796 63.158 0.00 0.00 0.00 3.41
42 43 2.029666 CCGACCAGCCGATGATCC 59.970 66.667 0.00 0.00 0.00 3.36
43 44 2.663188 GCCGACCAGCCGATGATC 60.663 66.667 0.00 0.00 0.00 2.92
44 45 3.157252 AGCCGACCAGCCGATGAT 61.157 61.111 0.00 0.00 0.00 2.45
45 46 4.147449 CAGCCGACCAGCCGATGA 62.147 66.667 0.00 0.00 0.00 2.92
50 51 2.593468 TATGAAGCAGCCGACCAGCC 62.593 60.000 0.00 0.00 0.00 4.85
51 52 0.744414 TTATGAAGCAGCCGACCAGC 60.744 55.000 0.00 0.00 0.00 4.85
52 53 1.869767 GATTATGAAGCAGCCGACCAG 59.130 52.381 0.00 0.00 0.00 4.00
53 54 1.486310 AGATTATGAAGCAGCCGACCA 59.514 47.619 0.00 0.00 0.00 4.02
54 55 2.139118 GAGATTATGAAGCAGCCGACC 58.861 52.381 0.00 0.00 0.00 4.79
55 56 2.139118 GGAGATTATGAAGCAGCCGAC 58.861 52.381 0.00 0.00 0.00 4.79
56 57 1.070758 GGGAGATTATGAAGCAGCCGA 59.929 52.381 0.00 0.00 0.00 5.54
57 58 1.202687 TGGGAGATTATGAAGCAGCCG 60.203 52.381 0.00 0.00 0.00 5.52
58 59 2.225467 GTGGGAGATTATGAAGCAGCC 58.775 52.381 0.00 0.00 0.00 4.85
59 60 2.225467 GGTGGGAGATTATGAAGCAGC 58.775 52.381 0.00 0.00 0.00 5.25
60 61 3.118112 ACTGGTGGGAGATTATGAAGCAG 60.118 47.826 0.00 0.00 38.69 4.24
61 62 2.846206 ACTGGTGGGAGATTATGAAGCA 59.154 45.455 0.00 0.00 0.00 3.91
62 63 3.471680 GACTGGTGGGAGATTATGAAGC 58.528 50.000 0.00 0.00 0.00 3.86
63 64 3.722147 CGACTGGTGGGAGATTATGAAG 58.278 50.000 0.00 0.00 0.00 3.02
64 65 2.158957 GCGACTGGTGGGAGATTATGAA 60.159 50.000 0.00 0.00 0.00 2.57
65 66 1.412710 GCGACTGGTGGGAGATTATGA 59.587 52.381 0.00 0.00 0.00 2.15
66 67 1.414181 AGCGACTGGTGGGAGATTATG 59.586 52.381 0.00 0.00 0.00 1.90
67 68 1.689273 GAGCGACTGGTGGGAGATTAT 59.311 52.381 0.00 0.00 0.00 1.28
68 69 1.112113 GAGCGACTGGTGGGAGATTA 58.888 55.000 0.00 0.00 0.00 1.75
69 70 1.617947 GGAGCGACTGGTGGGAGATT 61.618 60.000 0.00 0.00 0.00 2.40
70 71 2.060980 GGAGCGACTGGTGGGAGAT 61.061 63.158 0.00 0.00 0.00 2.75
71 72 2.680352 GGAGCGACTGGTGGGAGA 60.680 66.667 0.00 0.00 0.00 3.71
72 73 3.775654 GGGAGCGACTGGTGGGAG 61.776 72.222 0.00 0.00 0.00 4.30
73 74 2.523740 TATGGGAGCGACTGGTGGGA 62.524 60.000 0.00 0.00 0.00 4.37
74 75 1.410850 ATATGGGAGCGACTGGTGGG 61.411 60.000 0.00 0.00 0.00 4.61
75 76 0.469917 AATATGGGAGCGACTGGTGG 59.530 55.000 0.00 0.00 0.00 4.61
76 77 1.942657 CAAATATGGGAGCGACTGGTG 59.057 52.381 0.00 0.00 0.00 4.17
77 78 1.134098 CCAAATATGGGAGCGACTGGT 60.134 52.381 0.00 0.00 43.51 4.00
78 79 1.597742 CCAAATATGGGAGCGACTGG 58.402 55.000 0.00 0.00 43.51 4.00
89 90 3.733337 AGGCGCTCTAGTTCCAAATATG 58.267 45.455 7.64 0.00 0.00 1.78
90 91 3.553096 CGAGGCGCTCTAGTTCCAAATAT 60.553 47.826 7.64 0.00 0.00 1.28
91 92 2.223735 CGAGGCGCTCTAGTTCCAAATA 60.224 50.000 7.64 0.00 0.00 1.40
92 93 1.471676 CGAGGCGCTCTAGTTCCAAAT 60.472 52.381 7.64 0.00 0.00 2.32
93 94 0.108804 CGAGGCGCTCTAGTTCCAAA 60.109 55.000 7.64 0.00 0.00 3.28
94 95 1.511305 CGAGGCGCTCTAGTTCCAA 59.489 57.895 7.64 0.00 0.00 3.53
95 96 3.197614 CGAGGCGCTCTAGTTCCA 58.802 61.111 7.64 0.00 0.00 3.53
108 109 3.061848 AACCAAATGCCGGCGAGG 61.062 61.111 23.90 21.83 44.97 4.63
109 110 2.179018 CAACCAAATGCCGGCGAG 59.821 61.111 23.90 11.14 0.00 5.03
110 111 3.369400 CCAACCAAATGCCGGCGA 61.369 61.111 23.90 11.80 0.00 5.54
111 112 4.433877 CCCAACCAAATGCCGGCG 62.434 66.667 23.90 9.63 0.00 6.46
112 113 4.081185 CCCCAACCAAATGCCGGC 62.081 66.667 22.73 22.73 0.00 6.13
113 114 4.081185 GCCCCAACCAAATGCCGG 62.081 66.667 0.00 0.00 0.00 6.13
114 115 4.433877 CGCCCCAACCAAATGCCG 62.434 66.667 0.00 0.00 0.00 5.69
115 116 3.295304 GACGCCCCAACCAAATGCC 62.295 63.158 0.00 0.00 0.00 4.40
116 117 2.261361 GACGCCCCAACCAAATGC 59.739 61.111 0.00 0.00 0.00 3.56
117 118 2.566010 CGACGCCCCAACCAAATG 59.434 61.111 0.00 0.00 0.00 2.32
118 119 3.370231 GCGACGCCCCAACCAAAT 61.370 61.111 9.14 0.00 0.00 2.32
162 163 0.108472 TGCCTCTGATGCTCGTCAAG 60.108 55.000 6.49 0.00 0.00 3.02
163 164 0.108472 CTGCCTCTGATGCTCGTCAA 60.108 55.000 6.49 0.00 0.00 3.18
164 165 0.967380 TCTGCCTCTGATGCTCGTCA 60.967 55.000 6.49 0.00 0.00 4.35
165 166 0.388659 ATCTGCCTCTGATGCTCGTC 59.611 55.000 6.49 0.00 0.00 4.20
166 167 0.829333 AATCTGCCTCTGATGCTCGT 59.171 50.000 6.49 0.00 0.00 4.18
167 168 1.598132 CAAATCTGCCTCTGATGCTCG 59.402 52.381 6.49 0.00 0.00 5.03
168 169 2.613133 GACAAATCTGCCTCTGATGCTC 59.387 50.000 6.49 0.00 0.00 4.26
169 170 2.239150 AGACAAATCTGCCTCTGATGCT 59.761 45.455 6.49 0.00 32.29 3.79
170 171 2.641305 AGACAAATCTGCCTCTGATGC 58.359 47.619 0.00 0.00 32.29 3.91
171 172 4.008330 ACAAGACAAATCTGCCTCTGATG 58.992 43.478 0.00 0.00 34.48 3.07
172 173 4.298103 ACAAGACAAATCTGCCTCTGAT 57.702 40.909 0.00 0.00 34.48 2.90
173 174 3.777106 ACAAGACAAATCTGCCTCTGA 57.223 42.857 0.00 0.00 34.48 3.27
174 175 3.817084 TCAACAAGACAAATCTGCCTCTG 59.183 43.478 0.00 0.00 34.48 3.35
175 176 3.817647 GTCAACAAGACAAATCTGCCTCT 59.182 43.478 0.00 0.00 46.77 3.69
176 177 4.152607 GTCAACAAGACAAATCTGCCTC 57.847 45.455 0.00 0.00 46.77 4.70
187 188 1.671379 GGGGAGCCGTCAACAAGAC 60.671 63.158 0.00 0.00 44.02 3.01
188 189 1.827399 GAGGGGAGCCGTCAACAAGA 61.827 60.000 0.00 0.00 38.20 3.02
189 190 1.376037 GAGGGGAGCCGTCAACAAG 60.376 63.158 0.00 0.00 38.20 3.16
190 191 1.415672 AAGAGGGGAGCCGTCAACAA 61.416 55.000 0.00 0.00 40.46 2.83
191 192 1.841556 AAGAGGGGAGCCGTCAACA 60.842 57.895 0.00 0.00 40.46 3.33
192 193 1.376037 CAAGAGGGGAGCCGTCAAC 60.376 63.158 0.00 0.00 40.46 3.18
193 194 3.068881 CAAGAGGGGAGCCGTCAA 58.931 61.111 0.00 0.00 40.46 3.18
194 195 3.706373 GCAAGAGGGGAGCCGTCA 61.706 66.667 0.00 0.00 40.46 4.35
195 196 4.475135 GGCAAGAGGGGAGCCGTC 62.475 72.222 0.00 0.00 38.86 4.79
199 200 2.194326 GGATGGCAAGAGGGGAGC 59.806 66.667 0.00 0.00 0.00 4.70
200 201 1.530771 CTGGATGGCAAGAGGGGAG 59.469 63.158 0.00 0.00 0.00 4.30
201 202 2.683465 GCTGGATGGCAAGAGGGGA 61.683 63.158 0.00 0.00 0.00 4.81
202 203 2.123982 GCTGGATGGCAAGAGGGG 60.124 66.667 0.00 0.00 0.00 4.79
203 204 1.153005 GAGCTGGATGGCAAGAGGG 60.153 63.158 0.00 0.00 34.17 4.30
204 205 0.464013 CAGAGCTGGATGGCAAGAGG 60.464 60.000 0.00 0.00 34.17 3.69
205 206 1.096386 GCAGAGCTGGATGGCAAGAG 61.096 60.000 0.00 0.00 34.17 2.85
206 207 1.077930 GCAGAGCTGGATGGCAAGA 60.078 57.895 0.00 0.00 34.17 3.02
207 208 1.077644 AGCAGAGCTGGATGGCAAG 60.078 57.895 0.00 0.00 37.57 4.01
208 209 1.077930 GAGCAGAGCTGGATGGCAA 60.078 57.895 0.00 0.00 39.88 4.52
209 210 2.588439 GAGCAGAGCTGGATGGCA 59.412 61.111 0.00 0.00 39.88 4.92
210 211 2.203181 GGAGCAGAGCTGGATGGC 60.203 66.667 0.00 0.00 39.88 4.40
211 212 1.049855 AGAGGAGCAGAGCTGGATGG 61.050 60.000 0.00 0.00 39.88 3.51
212 213 0.105224 CAGAGGAGCAGAGCTGGATG 59.895 60.000 0.00 0.00 39.88 3.51
213 214 1.688269 GCAGAGGAGCAGAGCTGGAT 61.688 60.000 0.00 0.00 39.88 3.41
214 215 2.357575 GCAGAGGAGCAGAGCTGGA 61.358 63.158 0.00 0.00 39.88 3.86
215 216 2.187424 GCAGAGGAGCAGAGCTGG 59.813 66.667 0.00 0.00 39.88 4.85
216 217 1.142314 GAGCAGAGGAGCAGAGCTG 59.858 63.158 0.00 0.00 39.88 4.24
217 218 2.059786 GGAGCAGAGGAGCAGAGCT 61.060 63.158 0.00 0.00 43.88 4.09
218 219 2.019897 GAGGAGCAGAGGAGCAGAGC 62.020 65.000 0.00 0.00 36.85 4.09
219 220 1.727511 CGAGGAGCAGAGGAGCAGAG 61.728 65.000 0.00 0.00 36.85 3.35
220 221 1.752310 CGAGGAGCAGAGGAGCAGA 60.752 63.158 0.00 0.00 36.85 4.26
221 222 1.318886 TTCGAGGAGCAGAGGAGCAG 61.319 60.000 0.00 0.00 36.85 4.24
222 223 0.685785 ATTCGAGGAGCAGAGGAGCA 60.686 55.000 0.00 0.00 36.85 4.26
223 224 0.031994 GATTCGAGGAGCAGAGGAGC 59.968 60.000 0.00 0.00 0.00 4.70
224 225 1.397672 TGATTCGAGGAGCAGAGGAG 58.602 55.000 0.00 0.00 0.00 3.69
225 226 1.852633 TTGATTCGAGGAGCAGAGGA 58.147 50.000 0.00 0.00 0.00 3.71
226 227 2.906691 ATTGATTCGAGGAGCAGAGG 57.093 50.000 0.00 0.00 0.00 3.69
227 228 4.037327 TGAGTATTGATTCGAGGAGCAGAG 59.963 45.833 0.00 0.00 0.00 3.35
228 229 3.954258 TGAGTATTGATTCGAGGAGCAGA 59.046 43.478 0.00 0.00 0.00 4.26
229 230 4.047822 GTGAGTATTGATTCGAGGAGCAG 58.952 47.826 0.00 0.00 0.00 4.24
230 231 3.181475 GGTGAGTATTGATTCGAGGAGCA 60.181 47.826 0.00 0.00 0.00 4.26
231 232 3.385577 GGTGAGTATTGATTCGAGGAGC 58.614 50.000 0.00 0.00 0.00 4.70
232 233 3.315470 TCGGTGAGTATTGATTCGAGGAG 59.685 47.826 0.00 0.00 0.00 3.69
233 234 3.066342 GTCGGTGAGTATTGATTCGAGGA 59.934 47.826 0.00 0.00 0.00 3.71
234 235 3.372954 GTCGGTGAGTATTGATTCGAGG 58.627 50.000 0.00 0.00 0.00 4.63
235 236 3.036633 CGTCGGTGAGTATTGATTCGAG 58.963 50.000 0.00 0.00 0.00 4.04
236 237 2.223409 CCGTCGGTGAGTATTGATTCGA 60.223 50.000 2.08 0.00 0.00 3.71
237 238 2.117137 CCGTCGGTGAGTATTGATTCG 58.883 52.381 2.08 0.00 0.00 3.34
238 239 3.431922 TCCGTCGGTGAGTATTGATTC 57.568 47.619 11.88 0.00 0.00 2.52
239 240 3.880047 TTCCGTCGGTGAGTATTGATT 57.120 42.857 11.88 0.00 0.00 2.57
240 241 3.717707 CATTCCGTCGGTGAGTATTGAT 58.282 45.455 11.88 0.00 0.00 2.57
241 242 2.737359 GCATTCCGTCGGTGAGTATTGA 60.737 50.000 11.88 0.00 0.00 2.57
242 243 1.593006 GCATTCCGTCGGTGAGTATTG 59.407 52.381 11.88 0.00 0.00 1.90
243 244 1.480954 AGCATTCCGTCGGTGAGTATT 59.519 47.619 11.88 0.00 0.00 1.89
244 245 1.067212 GAGCATTCCGTCGGTGAGTAT 59.933 52.381 11.88 0.00 0.00 2.12
245 246 0.454600 GAGCATTCCGTCGGTGAGTA 59.545 55.000 11.88 0.00 0.00 2.59
246 247 1.215647 GAGCATTCCGTCGGTGAGT 59.784 57.895 11.88 0.00 0.00 3.41
247 248 1.874019 CGAGCATTCCGTCGGTGAG 60.874 63.158 11.88 3.27 32.40 3.51
248 249 2.180769 CGAGCATTCCGTCGGTGA 59.819 61.111 11.88 1.61 32.40 4.02
253 254 4.814294 ACCGCCGAGCATTCCGTC 62.814 66.667 0.00 0.00 0.00 4.79
262 263 4.514577 AGAATCCGCACCGCCGAG 62.515 66.667 0.00 0.00 0.00 4.63
263 264 4.812476 CAGAATCCGCACCGCCGA 62.812 66.667 0.00 0.00 0.00 5.54
265 266 3.195698 GACAGAATCCGCACCGCC 61.196 66.667 0.00 0.00 0.00 6.13
266 267 3.554692 CGACAGAATCCGCACCGC 61.555 66.667 0.00 0.00 0.00 5.68
267 268 1.209275 GATCGACAGAATCCGCACCG 61.209 60.000 0.00 0.00 0.00 4.94
268 269 0.103208 AGATCGACAGAATCCGCACC 59.897 55.000 0.00 0.00 0.00 5.01
269 270 1.203928 CAGATCGACAGAATCCGCAC 58.796 55.000 0.00 0.00 0.00 5.34
270 271 0.103026 CCAGATCGACAGAATCCGCA 59.897 55.000 0.00 0.00 0.00 5.69
271 272 0.385751 TCCAGATCGACAGAATCCGC 59.614 55.000 0.00 0.00 0.00 5.54
272 273 3.312828 GAATCCAGATCGACAGAATCCG 58.687 50.000 0.00 0.00 0.00 4.18
273 274 3.323403 AGGAATCCAGATCGACAGAATCC 59.677 47.826 0.61 0.00 0.00 3.01
274 275 4.202202 ACAGGAATCCAGATCGACAGAATC 60.202 45.833 0.61 0.00 0.00 2.52
275 276 3.708631 ACAGGAATCCAGATCGACAGAAT 59.291 43.478 0.61 0.00 0.00 2.40
276 277 3.099905 ACAGGAATCCAGATCGACAGAA 58.900 45.455 0.61 0.00 0.00 3.02
277 278 2.690497 GACAGGAATCCAGATCGACAGA 59.310 50.000 0.61 0.00 0.00 3.41
278 279 2.692557 AGACAGGAATCCAGATCGACAG 59.307 50.000 0.61 0.00 0.00 3.51
279 280 2.739943 AGACAGGAATCCAGATCGACA 58.260 47.619 0.61 0.00 0.00 4.35
280 281 3.131223 TCAAGACAGGAATCCAGATCGAC 59.869 47.826 0.61 0.00 0.00 4.20
281 282 3.365472 TCAAGACAGGAATCCAGATCGA 58.635 45.455 0.61 0.00 0.00 3.59
282 283 3.808466 TCAAGACAGGAATCCAGATCG 57.192 47.619 0.61 0.00 0.00 3.69
283 284 5.287674 TCATCAAGACAGGAATCCAGATC 57.712 43.478 0.61 0.00 0.00 2.75
284 285 5.705397 TTCATCAAGACAGGAATCCAGAT 57.295 39.130 0.61 0.00 0.00 2.90
285 286 5.494724 CTTTCATCAAGACAGGAATCCAGA 58.505 41.667 0.61 0.00 33.80 3.86
286 287 4.096081 GCTTTCATCAAGACAGGAATCCAG 59.904 45.833 0.61 0.00 33.80 3.86
287 288 4.012374 GCTTTCATCAAGACAGGAATCCA 58.988 43.478 0.61 0.00 33.80 3.41
288 289 3.379688 GGCTTTCATCAAGACAGGAATCC 59.620 47.826 0.00 0.00 40.85 3.01
289 290 4.012374 TGGCTTTCATCAAGACAGGAATC 58.988 43.478 0.00 0.00 46.61 2.52
290 291 4.038271 TGGCTTTCATCAAGACAGGAAT 57.962 40.909 0.00 0.00 46.61 3.01
291 292 3.507162 TGGCTTTCATCAAGACAGGAA 57.493 42.857 0.00 0.00 46.61 3.36
296 297 6.749923 AGTTCTTATGGCTTTCATCAAGAC 57.250 37.500 0.00 0.00 41.69 3.01
299 300 9.905713 AGTATTAGTTCTTATGGCTTTCATCAA 57.094 29.630 0.00 0.00 37.30 2.57
306 307 9.110502 GCAAAGTAGTATTAGTTCTTATGGCTT 57.889 33.333 0.00 0.00 0.00 4.35
307 308 8.265055 TGCAAAGTAGTATTAGTTCTTATGGCT 58.735 33.333 0.00 0.00 0.00 4.75
308 309 8.433421 TGCAAAGTAGTATTAGTTCTTATGGC 57.567 34.615 0.00 0.00 0.00 4.40
313 314 9.780186 AAGAGTTGCAAAGTAGTATTAGTTCTT 57.220 29.630 0.00 0.00 0.00 2.52
314 315 9.780186 AAAGAGTTGCAAAGTAGTATTAGTTCT 57.220 29.630 0.00 0.00 0.00 3.01
316 317 8.709646 CGAAAGAGTTGCAAAGTAGTATTAGTT 58.290 33.333 0.00 0.00 0.00 2.24
317 318 8.086522 TCGAAAGAGTTGCAAAGTAGTATTAGT 58.913 33.333 0.00 0.00 34.84 2.24
318 319 8.462143 TCGAAAGAGTTGCAAAGTAGTATTAG 57.538 34.615 0.00 0.00 34.84 1.73
335 336 7.954705 TGCAAAAAGGGCACAATCGAAAGAG 62.955 44.000 0.00 0.00 39.18 2.85
336 337 6.238035 TGCAAAAAGGGCACAATCGAAAGA 62.238 41.667 0.00 0.00 39.85 2.52
337 338 2.476241 GCAAAAAGGGCACAATCGAAAG 59.524 45.455 0.00 0.00 0.00 2.62
338 339 2.159043 TGCAAAAAGGGCACAATCGAAA 60.159 40.909 0.00 0.00 36.11 3.46
339 340 1.410517 TGCAAAAAGGGCACAATCGAA 59.589 42.857 0.00 0.00 36.11 3.71
340 341 1.000385 CTGCAAAAAGGGCACAATCGA 60.000 47.619 0.00 0.00 36.11 3.59
341 342 1.000385 TCTGCAAAAAGGGCACAATCG 60.000 47.619 0.00 0.00 36.11 3.34
342 343 2.297033 TCTCTGCAAAAAGGGCACAATC 59.703 45.455 0.00 0.00 36.11 2.67
343 344 2.298163 CTCTCTGCAAAAAGGGCACAAT 59.702 45.455 0.00 0.00 36.11 2.71
344 345 1.682854 CTCTCTGCAAAAAGGGCACAA 59.317 47.619 0.00 0.00 36.11 3.33
345 346 1.321474 CTCTCTGCAAAAAGGGCACA 58.679 50.000 0.00 0.00 36.11 4.57
346 347 1.322442 ACTCTCTGCAAAAAGGGCAC 58.678 50.000 0.00 0.00 36.11 5.01
347 348 2.106511 AGTACTCTCTGCAAAAAGGGCA 59.893 45.455 0.00 0.00 39.32 5.36
348 349 2.784347 AGTACTCTCTGCAAAAAGGGC 58.216 47.619 0.00 0.00 0.00 5.19
349 350 4.878397 CCATAGTACTCTCTGCAAAAAGGG 59.122 45.833 0.00 0.00 0.00 3.95
350 351 5.734720 TCCATAGTACTCTCTGCAAAAAGG 58.265 41.667 0.00 0.00 0.00 3.11
351 352 7.856145 AATCCATAGTACTCTCTGCAAAAAG 57.144 36.000 0.00 0.00 0.00 2.27
352 353 9.547753 GATAATCCATAGTACTCTCTGCAAAAA 57.452 33.333 0.00 0.00 0.00 1.94
353 354 7.867909 CGATAATCCATAGTACTCTCTGCAAAA 59.132 37.037 0.00 0.00 0.00 2.44
354 355 7.230712 TCGATAATCCATAGTACTCTCTGCAAA 59.769 37.037 0.00 0.00 0.00 3.68
355 356 6.715264 TCGATAATCCATAGTACTCTCTGCAA 59.285 38.462 0.00 0.00 0.00 4.08
356 357 6.238648 TCGATAATCCATAGTACTCTCTGCA 58.761 40.000 0.00 0.00 0.00 4.41
357 358 6.745159 TCGATAATCCATAGTACTCTCTGC 57.255 41.667 0.00 0.00 0.00 4.26
376 377 9.449719 GTGATCCAAGGGTTAATATTAATCGAT 57.550 33.333 11.00 8.33 0.00 3.59
377 378 7.881232 GGTGATCCAAGGGTTAATATTAATCGA 59.119 37.037 11.00 4.15 0.00 3.59
378 379 7.663905 TGGTGATCCAAGGGTTAATATTAATCG 59.336 37.037 11.00 0.00 41.25 3.34
379 380 8.934023 TGGTGATCCAAGGGTTAATATTAATC 57.066 34.615 11.00 10.29 41.25 1.75
395 396 4.837298 TGACCATTCATTTTTGGTGATCCA 59.163 37.500 0.00 0.00 46.14 3.41
396 397 5.404466 TGACCATTCATTTTTGGTGATCC 57.596 39.130 0.00 0.00 46.14 3.36
397 398 9.603921 AATATTGACCATTCATTTTTGGTGATC 57.396 29.630 0.00 0.00 46.14 2.92
398 399 9.962809 AAATATTGACCATTCATTTTTGGTGAT 57.037 25.926 0.00 0.00 46.14 3.06
411 412 9.219603 CGGTACATCAGATAAATATTGACCATT 57.780 33.333 0.00 0.00 0.00 3.16
412 413 8.375506 ACGGTACATCAGATAAATATTGACCAT 58.624 33.333 0.00 0.00 0.00 3.55
413 414 7.732025 ACGGTACATCAGATAAATATTGACCA 58.268 34.615 0.00 0.00 0.00 4.02
414 415 9.701098 TTACGGTACATCAGATAAATATTGACC 57.299 33.333 0.00 0.00 0.00 4.02
420 421 9.754382 GACCTTTTACGGTACATCAGATAAATA 57.246 33.333 0.00 0.00 37.42 1.40
421 422 8.483758 AGACCTTTTACGGTACATCAGATAAAT 58.516 33.333 0.00 0.00 37.42 1.40
422 423 7.844009 AGACCTTTTACGGTACATCAGATAAA 58.156 34.615 0.00 0.00 37.42 1.40
423 424 7.123098 TGAGACCTTTTACGGTACATCAGATAA 59.877 37.037 0.00 0.00 37.42 1.75
424 425 6.604396 TGAGACCTTTTACGGTACATCAGATA 59.396 38.462 0.00 0.00 37.42 1.98
425 426 5.421056 TGAGACCTTTTACGGTACATCAGAT 59.579 40.000 0.00 0.00 37.42 2.90
426 427 4.768448 TGAGACCTTTTACGGTACATCAGA 59.232 41.667 0.00 0.00 37.42 3.27
427 428 5.068234 TGAGACCTTTTACGGTACATCAG 57.932 43.478 0.00 0.00 37.42 2.90
428 429 5.670792 ATGAGACCTTTTACGGTACATCA 57.329 39.130 0.00 0.00 37.42 3.07
429 430 8.658499 AATTATGAGACCTTTTACGGTACATC 57.342 34.615 0.00 0.00 37.42 3.06
431 432 9.941325 TTAAATTATGAGACCTTTTACGGTACA 57.059 29.630 0.00 0.00 37.42 2.90
435 436 9.730420 CCAATTAAATTATGAGACCTTTTACGG 57.270 33.333 0.00 0.00 0.00 4.02
442 443 9.713684 TCCAAATCCAATTAAATTATGAGACCT 57.286 29.630 0.00 0.00 0.00 3.85
463 464 5.445069 TCAGGTGAAACTGAAGAATCCAAA 58.555 37.500 0.00 0.00 44.03 3.28
480 481 6.973843 TGAATGAAGAGTTGAAAATCAGGTG 58.026 36.000 0.00 0.00 0.00 4.00
554 555 4.397481 TTGGCATGTGACACAATTCAAA 57.603 36.364 13.23 1.89 29.05 2.69
738 747 2.188524 CCAGTTGACGAGATGATGACG 58.811 52.381 0.00 0.00 0.00 4.35
745 754 2.355108 CCATGAACCCAGTTGACGAGAT 60.355 50.000 0.00 0.00 0.00 2.75
751 760 0.698238 CCCTCCATGAACCCAGTTGA 59.302 55.000 0.00 0.00 0.00 3.18
753 762 1.384191 GCCCTCCATGAACCCAGTT 59.616 57.895 0.00 0.00 0.00 3.16
945 954 2.503061 CAGCGCCCACTCTGCTAT 59.497 61.111 2.29 0.00 37.15 2.97
950 959 3.474570 GGATCCAGCGCCCACTCT 61.475 66.667 6.95 0.00 0.00 3.24
1226 1297 2.301870 GGTGTCCAAGTATGTGTCTCCA 59.698 50.000 0.00 0.00 0.00 3.86
1267 1338 2.438021 TGCCAGAACACAACTTCCTAGT 59.562 45.455 0.00 0.00 35.68 2.57
1299 1374 3.623060 CACCAATCACATAGAACTTCCCG 59.377 47.826 0.00 0.00 0.00 5.14
1302 1377 5.003804 ACACCACCAATCACATAGAACTTC 58.996 41.667 0.00 0.00 0.00 3.01
1417 1492 2.124151 AGCACCGGCCATTCCATC 60.124 61.111 0.00 0.00 42.56 3.51
1683 1791 1.715785 CAACCAAATTCCACCCAGGT 58.284 50.000 0.00 0.00 39.02 4.00
1688 1796 3.313690 CGTTTAGCAACCAAATTCCACC 58.686 45.455 0.00 0.00 0.00 4.61
1769 1878 1.901591 ATGTCCATGGCATTCGATCC 58.098 50.000 6.96 0.00 0.00 3.36
1937 2059 6.056428 ACCATCGACTTAAAACTGAAACAC 57.944 37.500 0.00 0.00 0.00 3.32
1970 2099 4.560035 GCATCAGTTCATGGAAATCAAACG 59.440 41.667 0.00 0.00 0.00 3.60
1974 2103 5.124936 CAGAAGCATCAGTTCATGGAAATCA 59.875 40.000 0.00 0.00 0.00 2.57
2041 2171 2.028876 TGTTCACTCCGACAGAACAGA 58.971 47.619 0.00 0.00 44.60 3.41
2044 2174 3.807622 TGATTTGTTCACTCCGACAGAAC 59.192 43.478 0.00 0.00 41.42 3.01
2119 2251 1.126996 GACAAGACGTAGCGCTCGAC 61.127 60.000 27.66 22.72 0.00 4.20
2140 2272 3.367703 GCCCTGAATCCACAGAAAACATG 60.368 47.826 0.00 0.00 39.94 3.21
2142 2274 2.158475 AGCCCTGAATCCACAGAAAACA 60.158 45.455 0.00 0.00 39.94 2.83
2147 2279 0.614697 TCGAGCCCTGAATCCACAGA 60.615 55.000 0.00 0.00 39.94 3.41
2148 2280 0.460987 GTCGAGCCCTGAATCCACAG 60.461 60.000 0.00 0.00 37.61 3.66
2189 2321 1.208614 CTTTGAGCAGCGTCAAGGC 59.791 57.895 7.18 0.00 37.72 4.35
2242 2374 2.803956 CGTGTGTTTTAGTACCAGTGGG 59.196 50.000 15.21 0.00 41.29 4.61
2345 2617 8.506437 CAAATCACAACAGAAGATAACAGCTAA 58.494 33.333 0.00 0.00 0.00 3.09
2356 2628 5.242393 ACTGGAATCCAAATCACAACAGAAG 59.758 40.000 2.61 0.00 30.80 2.85
2359 2631 6.349611 CCTTACTGGAATCCAAATCACAACAG 60.350 42.308 2.61 0.00 38.35 3.16
2391 2663 2.203788 AGAACACCGGGGAGAGCA 60.204 61.111 12.96 0.00 0.00 4.26
2397 2669 0.833287 AGATCATGAGAACACCGGGG 59.167 55.000 0.00 0.00 0.00 5.73
2469 2775 9.144298 ACCTTACTGGAATCGAAATCTAGATTA 57.856 33.333 18.23 3.66 37.23 1.75
2470 2776 8.024145 ACCTTACTGGAATCGAAATCTAGATT 57.976 34.615 12.37 12.37 39.52 2.40
2471 2777 7.604657 ACCTTACTGGAATCGAAATCTAGAT 57.395 36.000 17.85 0.00 39.71 1.98
2472 2778 7.419711 AACCTTACTGGAATCGAAATCTAGA 57.580 36.000 17.85 0.00 39.71 2.43
2473 2779 8.391106 CAAAACCTTACTGGAATCGAAATCTAG 58.609 37.037 11.71 11.71 39.71 2.43
2474 2780 8.098286 TCAAAACCTTACTGGAATCGAAATCTA 58.902 33.333 0.00 0.00 39.71 1.98
2475 2781 6.940298 TCAAAACCTTACTGGAATCGAAATCT 59.060 34.615 0.00 0.00 39.71 2.40
2476 2782 7.021790 GTCAAAACCTTACTGGAATCGAAATC 58.978 38.462 0.00 0.00 39.71 2.17
2477 2783 6.348213 CGTCAAAACCTTACTGGAATCGAAAT 60.348 38.462 0.00 0.00 39.71 2.17
2478 2784 5.049954 CGTCAAAACCTTACTGGAATCGAAA 60.050 40.000 0.00 0.00 39.71 3.46
2479 2785 4.449743 CGTCAAAACCTTACTGGAATCGAA 59.550 41.667 0.00 0.00 39.71 3.71
2480 2786 3.991773 CGTCAAAACCTTACTGGAATCGA 59.008 43.478 0.00 0.00 39.71 3.59
2481 2787 3.424433 GCGTCAAAACCTTACTGGAATCG 60.424 47.826 0.00 0.00 39.71 3.34
2482 2788 3.751698 AGCGTCAAAACCTTACTGGAATC 59.248 43.478 0.00 0.00 39.71 2.52
2483 2789 3.751518 AGCGTCAAAACCTTACTGGAAT 58.248 40.909 0.00 0.00 39.71 3.01
2484 2790 3.135994 GAGCGTCAAAACCTTACTGGAA 58.864 45.455 0.00 0.00 39.71 3.53
2485 2791 2.367567 AGAGCGTCAAAACCTTACTGGA 59.632 45.455 0.00 0.00 39.71 3.86
2486 2792 2.737252 GAGAGCGTCAAAACCTTACTGG 59.263 50.000 0.00 0.00 42.93 4.00
2487 2793 2.737252 GGAGAGCGTCAAAACCTTACTG 59.263 50.000 0.00 0.00 0.00 2.74
2488 2794 2.289506 GGGAGAGCGTCAAAACCTTACT 60.290 50.000 0.00 0.00 0.00 2.24
2489 2795 2.074576 GGGAGAGCGTCAAAACCTTAC 58.925 52.381 0.00 0.00 0.00 2.34
2490 2796 1.975680 AGGGAGAGCGTCAAAACCTTA 59.024 47.619 0.00 0.00 0.00 2.69
2491 2797 0.765510 AGGGAGAGCGTCAAAACCTT 59.234 50.000 0.00 0.00 0.00 3.50
2492 2798 0.035458 CAGGGAGAGCGTCAAAACCT 59.965 55.000 0.00 0.00 0.00 3.50
2493 2799 0.955919 CCAGGGAGAGCGTCAAAACC 60.956 60.000 0.00 0.00 0.00 3.27
2494 2800 0.250338 ACCAGGGAGAGCGTCAAAAC 60.250 55.000 0.00 0.00 0.00 2.43
2495 2801 0.250295 CACCAGGGAGAGCGTCAAAA 60.250 55.000 0.00 0.00 0.00 2.44
2496 2802 1.371183 CACCAGGGAGAGCGTCAAA 59.629 57.895 0.00 0.00 0.00 2.69
2497 2803 1.407656 AACACCAGGGAGAGCGTCAA 61.408 55.000 0.00 0.00 0.00 3.18
2498 2804 1.816863 GAACACCAGGGAGAGCGTCA 61.817 60.000 0.00 0.00 0.00 4.35
2499 2805 1.079750 GAACACCAGGGAGAGCGTC 60.080 63.158 0.00 0.00 0.00 5.19
2500 2806 1.821061 CTGAACACCAGGGAGAGCGT 61.821 60.000 0.00 0.00 39.23 5.07
2501 2807 1.079543 CTGAACACCAGGGAGAGCG 60.080 63.158 0.00 0.00 39.23 5.03
2510 2816 3.466836 CACAGCTAGAAACTGAACACCA 58.533 45.455 0.00 0.00 38.55 4.17
2511 2817 2.224314 GCACAGCTAGAAACTGAACACC 59.776 50.000 0.00 0.00 38.55 4.16
2512 2818 3.134458 AGCACAGCTAGAAACTGAACAC 58.866 45.455 0.00 0.00 36.99 3.32
2513 2819 3.070159 AGAGCACAGCTAGAAACTGAACA 59.930 43.478 0.00 0.00 39.88 3.18
2521 2827 2.495270 CAGGAAGAGAGCACAGCTAGAA 59.505 50.000 0.00 0.00 39.88 2.10
2578 3650 3.273434 TGCCCTTCGATCTGAGAATTTG 58.727 45.455 0.00 0.00 0.00 2.32
2589 3661 3.011517 AGTGGCCTGCCCTTCGAT 61.012 61.111 3.32 0.00 34.56 3.59
2662 3734 3.896648 AAAGTTGCAGGTCACAATACG 57.103 42.857 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.