Multiple sequence alignment - TraesCS4A01G492800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G492800 chr4A 100.000 2348 0 0 1 2348 741610366 741612713 0.000000e+00 4337.0
1 TraesCS4A01G492800 chr4A 94.426 897 44 4 1 895 687007268 687008160 0.000000e+00 1375.0
2 TraesCS4A01G492800 chr4A 87.310 725 62 19 1 721 698541473 698542171 0.000000e+00 802.0
3 TraesCS4A01G492800 chr5B 94.924 1773 49 11 4 1772 636916407 636914672 0.000000e+00 2737.0
4 TraesCS4A01G492800 chr5B 95.195 770 21 3 1004 1773 234045228 234045981 0.000000e+00 1203.0
5 TraesCS4A01G492800 chr5B 89.286 56 6 0 1856 1911 531588075 531588020 1.160000e-08 71.3
6 TraesCS4A01G492800 chr3B 95.595 1294 42 5 483 1776 271101919 271100641 0.000000e+00 2060.0
7 TraesCS4A01G492800 chr3B 98.148 54 1 0 1772 1825 825004228 825004281 6.910000e-16 95.3
8 TraesCS4A01G492800 chr3B 97.368 38 1 0 1824 1861 271100645 271100608 5.420000e-07 65.8
9 TraesCS4A01G492800 chr3B 91.304 46 2 1 1855 1900 606421771 606421814 7.010000e-06 62.1
10 TraesCS4A01G492800 chr2D 95.754 895 30 8 4 895 472764617 472763728 0.000000e+00 1435.0
11 TraesCS4A01G492800 chr2D 98.077 52 1 0 1772 1823 586967642 586967693 8.940000e-15 91.6
12 TraesCS4A01G492800 chr2D 92.308 65 4 1 2284 2348 610251729 610251792 8.940000e-15 91.6
13 TraesCS4A01G492800 chr2D 98.039 51 1 0 1772 1822 136605659 136605709 3.210000e-14 89.8
14 TraesCS4A01G492800 chr2D 96.226 53 2 0 1771 1823 564602419 564602367 1.160000e-13 87.9
15 TraesCS4A01G492800 chr2D 93.220 59 2 2 1856 1913 646628776 646628719 4.160000e-13 86.1
16 TraesCS4A01G492800 chr2D 100.000 33 0 0 1824 1856 472762467 472762435 7.010000e-06 62.1
17 TraesCS4A01G492800 chr1D 95.434 898 35 6 1 895 66928361 66929255 0.000000e+00 1426.0
18 TraesCS4A01G492800 chr1D 88.385 353 40 1 1909 2261 59017737 59018088 7.760000e-115 424.0
19 TraesCS4A01G492800 chr1D 96.804 219 4 2 1514 1732 66929739 66929954 1.720000e-96 363.0
20 TraesCS4A01G492800 chr1D 96.347 219 4 2 1514 1732 424020709 424020495 7.980000e-95 357.0
21 TraesCS4A01G492800 chr1D 96.226 53 2 0 1772 1824 225048478 225048426 1.160000e-13 87.9
22 TraesCS4A01G492800 chr1D 97.561 41 1 0 1736 1776 424019968 424019928 1.160000e-08 71.3
23 TraesCS4A01G492800 chr1D 100.000 33 0 0 1824 1856 66930514 66930546 7.010000e-06 62.1
24 TraesCS4A01G492800 chr1D 100.000 33 0 0 1824 1856 424019932 424019900 7.010000e-06 62.1
25 TraesCS4A01G492800 chr7D 94.789 902 34 7 4 895 276089965 276089067 0.000000e+00 1393.0
26 TraesCS4A01G492800 chr7D 88.406 345 40 0 1917 2261 139825202 139824858 1.300000e-112 416.0
27 TraesCS4A01G492800 chr7D 88.000 325 39 0 1917 2241 613106514 613106190 3.660000e-103 385.0
28 TraesCS4A01G492800 chr7D 96.804 219 3 2 1514 1732 276088583 276088369 1.720000e-96 363.0
29 TraesCS4A01G492800 chr7D 98.077 52 1 0 1772 1823 104693533 104693584 8.940000e-15 91.6
30 TraesCS4A01G492800 chr7D 92.308 65 4 1 2284 2348 139824863 139824800 8.940000e-15 91.6
31 TraesCS4A01G492800 chr7D 100.000 33 0 0 1824 1856 276087805 276087773 7.010000e-06 62.1
32 TraesCS4A01G492800 chr4B 95.531 828 30 7 4 827 355187958 355187134 0.000000e+00 1317.0
33 TraesCS4A01G492800 chr4B 94.416 770 19 6 1004 1773 355187139 355186394 0.000000e+00 1162.0
34 TraesCS4A01G492800 chr4B 96.231 398 15 0 980 1377 1768681 1769078 0.000000e+00 652.0
35 TraesCS4A01G492800 chr4B 88.649 185 11 1 940 1114 1985610 1985426 1.410000e-52 217.0
36 TraesCS4A01G492800 chr4B 100.000 63 0 0 1418 1480 1769078 1769140 1.470000e-22 117.0
37 TraesCS4A01G492800 chr4B 96.226 53 2 0 1772 1824 323789834 323789782 1.160000e-13 87.9
38 TraesCS4A01G492800 chr2B 95.163 827 31 7 1 824 90147393 90148213 0.000000e+00 1297.0
39 TraesCS4A01G492800 chr2B 94.675 770 25 3 1004 1773 90148211 90148964 0.000000e+00 1181.0
40 TraesCS4A01G492800 chr2B 100.000 33 0 0 1824 1856 434231076 434231044 7.010000e-06 62.1
41 TraesCS4A01G492800 chr7B 95.402 609 25 3 217 824 668430612 668431218 0.000000e+00 966.0
42 TraesCS4A01G492800 chr7B 96.172 418 16 0 1004 1421 668435026 668435443 0.000000e+00 684.0
43 TraesCS4A01G492800 chr7B 96.633 297 6 1 1477 1773 668435462 668435754 7.540000e-135 490.0
44 TraesCS4A01G492800 chr5A 88.075 587 49 16 1 575 689247247 689246670 0.000000e+00 676.0
45 TraesCS4A01G492800 chr4D 92.473 372 28 0 980 1351 1326260 1326631 1.240000e-147 532.0
46 TraesCS4A01G492800 chrUn 96.099 282 11 0 1004 1285 453546812 453547093 5.910000e-126 460.0
47 TraesCS4A01G492800 chrUn 99.020 204 2 0 2145 2348 314347175 314346972 1.330000e-97 366.0
48 TraesCS4A01G492800 chrUn 96.714 213 5 1 1944 2154 314347790 314347578 1.030000e-93 353.0
49 TraesCS4A01G492800 chrUn 98.148 54 1 0 1772 1825 158063811 158063864 6.910000e-16 95.3
50 TraesCS4A01G492800 chr6D 89.776 313 15 2 580 892 282327075 282327370 3.660000e-103 385.0
51 TraesCS4A01G492800 chr6B 99.020 204 2 0 2145 2348 149602527 149602730 1.330000e-97 366.0
52 TraesCS4A01G492800 chr6B 96.714 213 5 1 1944 2154 149601912 149602124 1.030000e-93 353.0
53 TraesCS4A01G492800 chr6B 84.375 64 8 2 1847 1910 140590260 140590321 7.010000e-06 62.1
54 TraesCS4A01G492800 chr3D 89.655 145 14 1 1919 2063 8253850 8253993 1.430000e-42 183.0
55 TraesCS4A01G492800 chr6A 96.226 53 2 0 1772 1824 61214558 61214610 1.160000e-13 87.9
56 TraesCS4A01G492800 chr2A 97.727 44 1 0 1856 1899 516710893 516710936 2.500000e-10 76.8
57 TraesCS4A01G492800 chr2A 100.000 33 0 0 1824 1856 750036361 750036393 7.010000e-06 62.1
58 TraesCS4A01G492800 chr5D 97.561 41 1 0 1736 1776 24441133 24441093 1.160000e-08 71.3
59 TraesCS4A01G492800 chr5D 100.000 33 0 0 1824 1856 24441097 24441065 7.010000e-06 62.1
60 TraesCS4A01G492800 chr1A 97.561 41 1 0 1736 1776 34427587 34427547 1.160000e-08 71.3
61 TraesCS4A01G492800 chr1A 87.097 62 8 0 1849 1910 221649718 221649657 1.160000e-08 71.3
62 TraesCS4A01G492800 chr1A 100.000 33 0 0 1824 1856 34427551 34427519 7.010000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G492800 chr4A 741610366 741612713 2347 False 4337.000000 4337 100.000000 1 2348 1 chr4A.!!$F3 2347
1 TraesCS4A01G492800 chr4A 687007268 687008160 892 False 1375.000000 1375 94.426000 1 895 1 chr4A.!!$F1 894
2 TraesCS4A01G492800 chr4A 698541473 698542171 698 False 802.000000 802 87.310000 1 721 1 chr4A.!!$F2 720
3 TraesCS4A01G492800 chr5B 636914672 636916407 1735 True 2737.000000 2737 94.924000 4 1772 1 chr5B.!!$R2 1768
4 TraesCS4A01G492800 chr5B 234045228 234045981 753 False 1203.000000 1203 95.195000 1004 1773 1 chr5B.!!$F1 769
5 TraesCS4A01G492800 chr3B 271100608 271101919 1311 True 1062.900000 2060 96.481500 483 1861 2 chr3B.!!$R1 1378
6 TraesCS4A01G492800 chr2D 472762435 472764617 2182 True 748.550000 1435 97.877000 4 1856 2 chr2D.!!$R3 1852
7 TraesCS4A01G492800 chr1D 66928361 66930546 2185 False 617.033333 1426 97.412667 1 1856 3 chr1D.!!$F2 1855
8 TraesCS4A01G492800 chr7D 276087773 276089965 2192 True 606.033333 1393 97.197667 4 1856 3 chr7D.!!$R3 1852
9 TraesCS4A01G492800 chr4B 355186394 355187958 1564 True 1239.500000 1317 94.973500 4 1773 2 chr4B.!!$R3 1769
10 TraesCS4A01G492800 chr2B 90147393 90148964 1571 False 1239.000000 1297 94.919000 1 1773 2 chr2B.!!$F1 1772
11 TraesCS4A01G492800 chr7B 668430612 668435754 5142 False 713.333333 966 96.069000 217 1773 3 chr7B.!!$F1 1556
12 TraesCS4A01G492800 chr5A 689246670 689247247 577 True 676.000000 676 88.075000 1 575 1 chr5A.!!$R1 574
13 TraesCS4A01G492800 chrUn 314346972 314347790 818 True 359.500000 366 97.867000 1944 2348 2 chrUn.!!$R1 404
14 TraesCS4A01G492800 chr6B 149601912 149602730 818 False 359.500000 366 97.867000 1944 2348 2 chr6B.!!$F2 404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 4765 0.392461 TTGGAATTCTTCTCCGCCGG 60.392 55.0 5.23 0.0 35.55 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 6620 0.394938 TCAACACAAGCTAGCCGGAA 59.605 50.0 12.13 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 7.881775 ATATGGTAGGTCCTTCATGAAAAAC 57.118 36.000 9.88 10.03 37.07 2.43
68 70 5.534654 TCCTTCATGAAAAACCTCATTTCGT 59.465 36.000 9.88 0.00 39.17 3.85
74 76 4.576873 TGAAAAACCTCATTTCGTGCACTA 59.423 37.500 16.19 0.00 39.17 2.74
178 182 6.037391 AGTGAAAATTTGTGTGATGCCTTTTG 59.963 34.615 0.00 0.00 0.00 2.44
179 183 4.816786 AAATTTGTGTGATGCCTTTTGC 57.183 36.364 0.00 0.00 41.77 3.68
180 184 1.850377 TTTGTGTGATGCCTTTTGCG 58.150 45.000 0.00 0.00 45.60 4.85
304 310 1.224069 GATGACATGACGCCCATCCG 61.224 60.000 0.00 0.00 31.94 4.18
468 3896 2.363361 CCACCTCCTCCCCGTACT 59.637 66.667 0.00 0.00 0.00 2.73
653 4484 3.727258 CAGGATTCCCCGCACCCA 61.727 66.667 0.00 0.00 40.87 4.51
687 4518 0.839946 AGCTCCTCCTGTGTGTTTGT 59.160 50.000 0.00 0.00 0.00 2.83
799 4630 5.398236 TCTTTCTTCCTCCTTTCTCTCTCA 58.602 41.667 0.00 0.00 0.00 3.27
821 4652 4.797868 CACACACATCTCGATTTCTCTCTC 59.202 45.833 0.00 0.00 0.00 3.20
853 4684 3.499737 CACTTCGCCGCCATGGAC 61.500 66.667 18.40 5.97 42.00 4.02
904 4735 3.255379 GATGCGAACGGCGGACTC 61.255 66.667 13.24 3.67 45.19 3.36
905 4736 4.814294 ATGCGAACGGCGGACTCC 62.814 66.667 13.24 0.00 45.19 3.85
907 4738 4.736896 GCGAACGGCGGACTCCTT 62.737 66.667 13.24 0.00 41.29 3.36
908 4739 2.506438 CGAACGGCGGACTCCTTC 60.506 66.667 13.24 3.53 36.03 3.46
909 4740 2.125633 GAACGGCGGACTCCTTCC 60.126 66.667 13.24 0.00 41.75 3.46
910 4741 2.603776 AACGGCGGACTCCTTCCT 60.604 61.111 13.24 0.00 43.25 3.36
911 4742 2.560051 GAACGGCGGACTCCTTCCTC 62.560 65.000 13.24 0.00 43.25 3.71
912 4743 2.756283 CGGCGGACTCCTTCCTCT 60.756 66.667 0.00 0.00 43.25 3.69
913 4744 2.352032 CGGCGGACTCCTTCCTCTT 61.352 63.158 0.00 0.00 43.25 2.85
914 4745 1.518302 GGCGGACTCCTTCCTCTTC 59.482 63.158 0.00 0.00 43.25 2.87
915 4746 0.973496 GGCGGACTCCTTCCTCTTCT 60.973 60.000 0.00 0.00 43.25 2.85
916 4747 0.899019 GCGGACTCCTTCCTCTTCTT 59.101 55.000 0.00 0.00 43.25 2.52
917 4748 1.404851 GCGGACTCCTTCCTCTTCTTG 60.405 57.143 0.00 0.00 43.25 3.02
918 4749 1.205893 CGGACTCCTTCCTCTTCTTGG 59.794 57.143 0.00 0.00 43.25 3.61
919 4750 2.541466 GGACTCCTTCCTCTTCTTGGA 58.459 52.381 0.00 0.00 41.95 3.53
920 4751 2.907042 GGACTCCTTCCTCTTCTTGGAA 59.093 50.000 0.00 0.00 41.95 3.53
921 4752 3.521531 GGACTCCTTCCTCTTCTTGGAAT 59.478 47.826 0.00 0.00 42.03 3.01
922 4753 4.018870 GGACTCCTTCCTCTTCTTGGAATT 60.019 45.833 0.00 0.00 42.03 2.17
923 4754 5.172687 ACTCCTTCCTCTTCTTGGAATTC 57.827 43.478 0.00 0.00 42.03 2.17
924 4755 4.849235 ACTCCTTCCTCTTCTTGGAATTCT 59.151 41.667 5.23 0.00 42.03 2.40
925 4756 5.311913 ACTCCTTCCTCTTCTTGGAATTCTT 59.688 40.000 5.23 0.00 42.03 2.52
926 4757 5.810095 TCCTTCCTCTTCTTGGAATTCTTC 58.190 41.667 5.23 0.00 42.03 2.87
927 4758 5.549619 TCCTTCCTCTTCTTGGAATTCTTCT 59.450 40.000 5.23 0.00 42.03 2.85
928 4759 5.879777 CCTTCCTCTTCTTGGAATTCTTCTC 59.120 44.000 5.23 0.00 42.03 2.87
929 4760 5.428184 TCCTCTTCTTGGAATTCTTCTCC 57.572 43.478 5.23 0.00 0.00 3.71
930 4761 4.081420 TCCTCTTCTTGGAATTCTTCTCCG 60.081 45.833 5.23 0.00 35.55 4.63
931 4762 3.600388 TCTTCTTGGAATTCTTCTCCGC 58.400 45.455 5.23 0.00 35.55 5.54
932 4763 2.403252 TCTTGGAATTCTTCTCCGCC 57.597 50.000 5.23 0.00 35.55 6.13
933 4764 1.009829 CTTGGAATTCTTCTCCGCCG 58.990 55.000 5.23 0.00 35.55 6.46
934 4765 0.392461 TTGGAATTCTTCTCCGCCGG 60.392 55.000 5.23 0.00 35.55 6.13
935 4766 2.180862 GGAATTCTTCTCCGCCGGC 61.181 63.158 19.07 19.07 0.00 6.13
936 4767 2.124695 AATTCTTCTCCGCCGGCC 60.125 61.111 23.46 2.84 0.00 6.13
937 4768 4.530857 ATTCTTCTCCGCCGGCCG 62.531 66.667 23.46 21.04 0.00 6.13
967 4798 4.047059 GCCTCGTCGTCGGTGGAA 62.047 66.667 15.70 0.00 37.69 3.53
968 4799 2.882876 CCTCGTCGTCGGTGGAAT 59.117 61.111 1.55 0.00 37.69 3.01
969 4800 1.226603 CCTCGTCGTCGGTGGAATC 60.227 63.158 1.55 0.00 37.69 2.52
970 4801 1.226603 CTCGTCGTCGGTGGAATCC 60.227 63.158 1.55 0.00 37.69 3.01
971 4802 1.929806 CTCGTCGTCGGTGGAATCCA 61.930 60.000 0.00 0.00 37.69 3.41
972 4803 1.141019 CGTCGTCGGTGGAATCCAT 59.859 57.895 4.81 0.00 35.28 3.41
973 4804 0.459585 CGTCGTCGGTGGAATCCATT 60.460 55.000 4.81 0.00 35.28 3.16
974 4805 1.287425 GTCGTCGGTGGAATCCATTC 58.713 55.000 4.81 0.07 35.28 2.67
975 4806 0.899019 TCGTCGGTGGAATCCATTCA 59.101 50.000 4.81 0.00 38.53 2.57
976 4807 1.484653 TCGTCGGTGGAATCCATTCAT 59.515 47.619 4.81 0.00 38.53 2.57
977 4808 1.867233 CGTCGGTGGAATCCATTCATC 59.133 52.381 4.81 0.00 38.53 2.92
978 4809 1.867233 GTCGGTGGAATCCATTCATCG 59.133 52.381 4.81 5.53 38.53 3.84
979 4810 1.202639 TCGGTGGAATCCATTCATCGG 60.203 52.381 4.81 0.00 38.53 4.18
980 4811 1.202639 CGGTGGAATCCATTCATCGGA 60.203 52.381 4.81 0.00 38.53 4.55
981 4812 2.498167 GGTGGAATCCATTCATCGGAG 58.502 52.381 4.81 0.00 38.53 4.63
982 4813 2.104792 GGTGGAATCCATTCATCGGAGA 59.895 50.000 4.81 0.00 38.53 3.71
983 4814 3.433598 GGTGGAATCCATTCATCGGAGAA 60.434 47.826 4.81 0.00 36.20 2.87
984 4815 3.812053 GTGGAATCCATTCATCGGAGAAG 59.188 47.826 4.81 0.00 36.20 2.85
985 4816 3.711190 TGGAATCCATTCATCGGAGAAGA 59.289 43.478 0.00 0.00 38.53 2.87
986 4817 4.202295 TGGAATCCATTCATCGGAGAAGAG 60.202 45.833 0.00 0.00 35.03 2.85
987 4818 4.039730 GGAATCCATTCATCGGAGAAGAGA 59.960 45.833 0.00 0.00 35.03 3.10
988 4819 5.453903 GGAATCCATTCATCGGAGAAGAGAA 60.454 44.000 0.00 0.00 35.03 2.87
989 4820 4.662468 TCCATTCATCGGAGAAGAGAAG 57.338 45.455 0.00 0.00 43.58 2.85
990 4821 4.281657 TCCATTCATCGGAGAAGAGAAGA 58.718 43.478 0.00 0.00 43.58 2.87
991 4822 4.340666 TCCATTCATCGGAGAAGAGAAGAG 59.659 45.833 0.00 0.00 43.58 2.85
992 4823 4.340666 CCATTCATCGGAGAAGAGAAGAGA 59.659 45.833 0.00 0.00 43.58 3.10
993 4824 5.163468 CCATTCATCGGAGAAGAGAAGAGAA 60.163 44.000 0.00 0.00 43.58 2.87
994 4825 5.574891 TTCATCGGAGAAGAGAAGAGAAG 57.425 43.478 0.00 0.00 43.58 2.85
995 4826 4.849518 TCATCGGAGAAGAGAAGAGAAGA 58.150 43.478 0.00 0.00 43.58 2.87
996 4827 5.257262 TCATCGGAGAAGAGAAGAGAAGAA 58.743 41.667 0.00 0.00 43.58 2.52
997 4828 5.712446 TCATCGGAGAAGAGAAGAGAAGAAA 59.288 40.000 0.00 0.00 43.58 2.52
998 4829 6.209589 TCATCGGAGAAGAGAAGAGAAGAAAA 59.790 38.462 0.00 0.00 43.58 2.29
999 4830 6.019779 TCGGAGAAGAGAAGAGAAGAAAAG 57.980 41.667 0.00 0.00 0.00 2.27
1000 4831 5.770663 TCGGAGAAGAGAAGAGAAGAAAAGA 59.229 40.000 0.00 0.00 0.00 2.52
1001 4832 6.435904 TCGGAGAAGAGAAGAGAAGAAAAGAT 59.564 38.462 0.00 0.00 0.00 2.40
1002 4833 6.531240 CGGAGAAGAGAAGAGAAGAAAAGATG 59.469 42.308 0.00 0.00 0.00 2.90
1181 5263 4.388499 GGCCCACGTCGTCATGGT 62.388 66.667 0.00 0.00 33.80 3.55
1184 5266 3.179265 CCACGTCGTCATGGTCGC 61.179 66.667 0.00 0.00 0.00 5.19
1403 5485 3.013188 ACCTAATCCCCACACCACTACTA 59.987 47.826 0.00 0.00 0.00 1.82
1472 5554 4.437682 TTCATTCAGGTTCAGGTTCAGT 57.562 40.909 0.00 0.00 0.00 3.41
1473 5555 4.437682 TCATTCAGGTTCAGGTTCAGTT 57.562 40.909 0.00 0.00 0.00 3.16
1474 5556 4.792068 TCATTCAGGTTCAGGTTCAGTTT 58.208 39.130 0.00 0.00 0.00 2.66
1475 5557 4.821805 TCATTCAGGTTCAGGTTCAGTTTC 59.178 41.667 0.00 0.00 0.00 2.78
1476 5558 3.924114 TCAGGTTCAGGTTCAGTTTCA 57.076 42.857 0.00 0.00 0.00 2.69
1477 5559 3.808728 TCAGGTTCAGGTTCAGTTTCAG 58.191 45.455 0.00 0.00 0.00 3.02
1478 5560 3.199946 TCAGGTTCAGGTTCAGTTTCAGT 59.800 43.478 0.00 0.00 0.00 3.41
1479 5561 3.947834 CAGGTTCAGGTTCAGTTTCAGTT 59.052 43.478 0.00 0.00 0.00 3.16
1480 5562 4.399303 CAGGTTCAGGTTCAGTTTCAGTTT 59.601 41.667 0.00 0.00 0.00 2.66
1481 5563 4.640647 AGGTTCAGGTTCAGTTTCAGTTTC 59.359 41.667 0.00 0.00 0.00 2.78
1482 5564 4.398044 GGTTCAGGTTCAGTTTCAGTTTCA 59.602 41.667 0.00 0.00 0.00 2.69
1483 5565 5.449177 GGTTCAGGTTCAGTTTCAGTTTCAG 60.449 44.000 0.00 0.00 0.00 3.02
1662 5937 7.093771 TGCTGAATATGTTCTTCACTGTCTAGA 60.094 37.037 3.72 0.00 35.33 2.43
1771 6572 0.459899 TAGCTGGGATGTGTAGCGTG 59.540 55.000 0.00 0.00 42.10 5.34
1772 6573 1.815421 GCTGGGATGTGTAGCGTGG 60.815 63.158 0.00 0.00 0.00 4.94
1773 6574 1.596934 CTGGGATGTGTAGCGTGGT 59.403 57.895 0.00 0.00 0.00 4.16
1774 6575 0.036388 CTGGGATGTGTAGCGTGGTT 60.036 55.000 0.00 0.00 0.00 3.67
1775 6576 1.206132 CTGGGATGTGTAGCGTGGTTA 59.794 52.381 0.00 0.00 0.00 2.85
1776 6577 1.066716 TGGGATGTGTAGCGTGGTTAC 60.067 52.381 0.00 0.00 0.00 2.50
1777 6578 1.206371 GGGATGTGTAGCGTGGTTACT 59.794 52.381 0.00 0.00 0.00 2.24
1778 6579 2.268298 GGATGTGTAGCGTGGTTACTG 58.732 52.381 0.00 0.00 0.00 2.74
1779 6580 2.353406 GGATGTGTAGCGTGGTTACTGT 60.353 50.000 0.00 0.00 0.00 3.55
1780 6581 3.119388 GGATGTGTAGCGTGGTTACTGTA 60.119 47.826 0.00 0.00 0.00 2.74
1781 6582 3.564235 TGTGTAGCGTGGTTACTGTAG 57.436 47.619 0.00 0.00 0.00 2.74
1782 6583 2.257034 GTGTAGCGTGGTTACTGTAGC 58.743 52.381 0.00 0.00 0.00 3.58
1783 6584 2.094854 GTGTAGCGTGGTTACTGTAGCT 60.095 50.000 1.71 0.00 38.57 3.32
1784 6585 2.559668 TGTAGCGTGGTTACTGTAGCTT 59.440 45.455 0.00 0.00 36.30 3.74
1785 6586 3.758023 TGTAGCGTGGTTACTGTAGCTTA 59.242 43.478 0.00 0.00 36.30 3.09
1786 6587 3.227810 AGCGTGGTTACTGTAGCTTAC 57.772 47.619 0.00 1.71 0.00 2.34
1787 6588 2.559668 AGCGTGGTTACTGTAGCTTACA 59.440 45.455 0.00 0.00 37.13 2.41
1788 6589 3.194968 AGCGTGGTTACTGTAGCTTACAT 59.805 43.478 0.00 0.00 38.15 2.29
1789 6590 3.306166 GCGTGGTTACTGTAGCTTACATG 59.694 47.826 0.00 0.00 38.15 3.21
1790 6591 4.740268 CGTGGTTACTGTAGCTTACATGA 58.260 43.478 0.00 0.00 38.15 3.07
1791 6592 4.561606 CGTGGTTACTGTAGCTTACATGAC 59.438 45.833 0.00 0.00 38.15 3.06
1792 6593 5.475719 GTGGTTACTGTAGCTTACATGACA 58.524 41.667 0.00 0.00 38.15 3.58
1793 6594 6.106673 GTGGTTACTGTAGCTTACATGACAT 58.893 40.000 0.00 0.00 38.15 3.06
1794 6595 6.255887 GTGGTTACTGTAGCTTACATGACATC 59.744 42.308 0.00 0.00 38.15 3.06
1795 6596 5.753921 GGTTACTGTAGCTTACATGACATCC 59.246 44.000 0.00 0.00 38.15 3.51
1796 6597 4.408182 ACTGTAGCTTACATGACATCCC 57.592 45.455 0.00 0.00 38.15 3.85
1797 6598 4.033709 ACTGTAGCTTACATGACATCCCT 58.966 43.478 0.00 0.00 38.15 4.20
1798 6599 4.471386 ACTGTAGCTTACATGACATCCCTT 59.529 41.667 0.00 0.00 38.15 3.95
1799 6600 4.769688 TGTAGCTTACATGACATCCCTTG 58.230 43.478 0.00 0.00 32.89 3.61
1800 6601 4.469586 TGTAGCTTACATGACATCCCTTGA 59.530 41.667 0.00 0.00 32.89 3.02
1801 6602 4.148128 AGCTTACATGACATCCCTTGAG 57.852 45.455 0.00 0.00 0.00 3.02
1802 6603 3.118112 AGCTTACATGACATCCCTTGAGG 60.118 47.826 0.00 0.00 0.00 3.86
1813 6614 3.776731 TCCCTTGAGGATGTTAGAGGA 57.223 47.619 0.00 0.00 40.93 3.71
1814 6615 4.286813 TCCCTTGAGGATGTTAGAGGAT 57.713 45.455 0.00 0.00 40.93 3.24
1815 6616 4.227197 TCCCTTGAGGATGTTAGAGGATC 58.773 47.826 0.00 0.00 40.93 3.36
1816 6617 3.326297 CCCTTGAGGATGTTAGAGGATCC 59.674 52.174 2.48 2.48 38.83 3.36
1817 6618 3.006323 CCTTGAGGATGTTAGAGGATCCG 59.994 52.174 5.98 0.00 42.73 4.18
1818 6619 3.595190 TGAGGATGTTAGAGGATCCGA 57.405 47.619 5.98 0.00 42.73 4.55
1819 6620 4.119556 TGAGGATGTTAGAGGATCCGAT 57.880 45.455 5.98 1.10 42.73 4.18
1820 6621 4.483950 TGAGGATGTTAGAGGATCCGATT 58.516 43.478 5.98 0.00 42.73 3.34
1821 6622 4.524714 TGAGGATGTTAGAGGATCCGATTC 59.475 45.833 5.98 0.00 42.73 2.52
1822 6623 3.835395 AGGATGTTAGAGGATCCGATTCC 59.165 47.826 5.98 7.36 42.73 3.01
1856 6657 9.906660 TTGTGTTGATTGGTTTTGAGATATAAC 57.093 29.630 0.00 0.00 0.00 1.89
1871 6672 7.615403 TGAGATATAACTAGATCATGGTTGGC 58.385 38.462 0.00 0.00 34.05 4.52
1872 6673 7.235399 TGAGATATAACTAGATCATGGTTGGCA 59.765 37.037 0.00 0.00 34.05 4.92
1873 6674 7.390027 AGATATAACTAGATCATGGTTGGCAC 58.610 38.462 0.00 0.00 34.05 5.01
1874 6675 2.315925 ACTAGATCATGGTTGGCACG 57.684 50.000 0.00 0.00 0.00 5.34
1875 6676 0.940126 CTAGATCATGGTTGGCACGC 59.060 55.000 0.00 0.00 0.00 5.34
1876 6677 0.809636 TAGATCATGGTTGGCACGCG 60.810 55.000 3.53 3.53 0.00 6.01
1877 6678 2.359850 ATCATGGTTGGCACGCGT 60.360 55.556 5.58 5.58 0.00 6.01
1878 6679 1.922135 GATCATGGTTGGCACGCGTT 61.922 55.000 10.22 0.00 0.00 4.84
1879 6680 2.198906 ATCATGGTTGGCACGCGTTG 62.199 55.000 10.22 6.68 0.00 4.10
1892 6693 2.511373 CGTTGCTGCGCCCATCTA 60.511 61.111 4.18 0.00 0.00 1.98
1893 6694 1.889105 CGTTGCTGCGCCCATCTAT 60.889 57.895 4.18 0.00 0.00 1.98
1894 6695 1.439353 CGTTGCTGCGCCCATCTATT 61.439 55.000 4.18 0.00 0.00 1.73
1895 6696 0.740737 GTTGCTGCGCCCATCTATTT 59.259 50.000 4.18 0.00 0.00 1.40
1896 6697 1.134946 GTTGCTGCGCCCATCTATTTT 59.865 47.619 4.18 0.00 0.00 1.82
1897 6698 0.740149 TGCTGCGCCCATCTATTTTG 59.260 50.000 4.18 0.00 0.00 2.44
1898 6699 1.024271 GCTGCGCCCATCTATTTTGA 58.976 50.000 4.18 0.00 0.00 2.69
1899 6700 1.268743 GCTGCGCCCATCTATTTTGAC 60.269 52.381 4.18 0.00 0.00 3.18
1900 6701 1.003545 CTGCGCCCATCTATTTTGACG 60.004 52.381 4.18 0.00 0.00 4.35
1901 6702 1.295792 GCGCCCATCTATTTTGACGA 58.704 50.000 0.00 0.00 0.00 4.20
1902 6703 1.873591 GCGCCCATCTATTTTGACGAT 59.126 47.619 0.00 0.00 0.00 3.73
1903 6704 3.064207 GCGCCCATCTATTTTGACGATA 58.936 45.455 0.00 0.00 0.00 2.92
1904 6705 3.123621 GCGCCCATCTATTTTGACGATAG 59.876 47.826 0.00 0.00 46.19 2.08
1905 6706 4.556233 CGCCCATCTATTTTGACGATAGA 58.444 43.478 0.00 0.00 39.64 1.98
1906 6707 4.988540 CGCCCATCTATTTTGACGATAGAA 59.011 41.667 0.00 0.00 39.01 2.10
1907 6708 5.639506 CGCCCATCTATTTTGACGATAGAAT 59.360 40.000 0.00 0.00 39.01 2.40
1908 6709 6.401474 CGCCCATCTATTTTGACGATAGAATG 60.401 42.308 0.00 0.00 39.01 2.67
1909 6710 6.650807 GCCCATCTATTTTGACGATAGAATGA 59.349 38.462 0.00 0.00 39.01 2.57
1910 6711 7.335422 GCCCATCTATTTTGACGATAGAATGAT 59.665 37.037 0.00 0.00 39.01 2.45
1911 6712 9.875691 CCCATCTATTTTGACGATAGAATGATA 57.124 33.333 0.00 0.00 39.01 2.15
1937 6738 4.701956 AAAGAGATAAACGCACCATTGG 57.298 40.909 0.00 0.00 0.00 3.16
1938 6739 3.350219 AGAGATAAACGCACCATTGGT 57.650 42.857 1.37 1.37 35.62 3.67
1939 6740 3.270877 AGAGATAAACGCACCATTGGTC 58.729 45.455 5.04 0.40 31.02 4.02
1940 6741 3.006940 GAGATAAACGCACCATTGGTCA 58.993 45.455 5.04 0.00 31.02 4.02
1941 6742 3.620488 AGATAAACGCACCATTGGTCAT 58.380 40.909 5.04 0.00 31.02 3.06
1942 6743 4.016444 AGATAAACGCACCATTGGTCATT 58.984 39.130 5.04 1.65 31.02 2.57
2039 6842 0.819259 GCAAACTGGTCACTCTGCCA 60.819 55.000 0.00 0.00 0.00 4.92
2079 6882 1.300931 GAAGTGCCGTGCTGACTCA 60.301 57.895 0.00 0.00 0.00 3.41
2133 6936 3.366052 TTAGAGGGTGGGATTCTTTGC 57.634 47.619 0.00 0.00 0.00 3.68
2286 7501 3.081133 CGACACACATGTAGGCGC 58.919 61.111 12.09 0.00 39.95 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
178 182 8.388103 TGAAGTAGCTATCAAAACTATTTTCGC 58.612 33.333 0.00 0.00 0.00 4.70
179 183 9.690434 GTGAAGTAGCTATCAAAACTATTTTCG 57.310 33.333 0.00 0.00 0.00 3.46
275 280 1.111277 TCATGTCATCGATCCGTGGT 58.889 50.000 11.84 0.00 0.00 4.16
304 310 4.445448 GGAGATATGTATGGATGGATGGCC 60.445 50.000 0.00 0.00 0.00 5.36
468 3896 4.870618 TGGATCGGGATGGGGCGA 62.871 66.667 0.00 0.00 0.00 5.54
475 3903 0.178947 GGAGAGGACTGGATCGGGAT 60.179 60.000 0.00 0.00 0.00 3.85
799 4630 4.704540 AGAGAGAGAAATCGAGATGTGTGT 59.295 41.667 0.00 0.00 0.00 3.72
919 4750 2.124695 GGCCGGCGGAGAAGAATT 60.125 61.111 33.44 0.00 0.00 2.17
920 4751 4.530857 CGGCCGGCGGAGAAGAAT 62.531 66.667 33.44 0.00 0.00 2.40
950 4781 3.352338 ATTCCACCGACGACGAGGC 62.352 63.158 9.28 0.00 42.66 4.70
951 4782 1.226603 GATTCCACCGACGACGAGG 60.227 63.158 9.28 10.40 42.66 4.63
952 4783 1.226603 GGATTCCACCGACGACGAG 60.227 63.158 9.28 1.47 42.66 4.18
953 4784 1.317431 ATGGATTCCACCGACGACGA 61.317 55.000 7.76 0.00 37.86 4.20
954 4785 0.459585 AATGGATTCCACCGACGACG 60.460 55.000 7.76 0.00 35.80 5.12
955 4786 1.287425 GAATGGATTCCACCGACGAC 58.713 55.000 7.76 0.00 35.80 4.34
956 4787 0.899019 TGAATGGATTCCACCGACGA 59.101 50.000 7.76 0.00 35.80 4.20
957 4788 1.867233 GATGAATGGATTCCACCGACG 59.133 52.381 7.76 0.00 35.80 5.12
958 4789 1.867233 CGATGAATGGATTCCACCGAC 59.133 52.381 7.76 0.80 35.80 4.79
959 4790 1.202639 CCGATGAATGGATTCCACCGA 60.203 52.381 7.76 0.00 35.80 4.69
960 4791 1.202639 TCCGATGAATGGATTCCACCG 60.203 52.381 7.76 6.88 35.80 4.94
961 4792 2.104792 TCTCCGATGAATGGATTCCACC 59.895 50.000 7.76 3.78 35.80 4.61
962 4793 3.475566 TCTCCGATGAATGGATTCCAC 57.524 47.619 7.76 0.00 35.80 4.02
963 4794 3.711190 TCTTCTCCGATGAATGGATTCCA 59.289 43.478 8.08 8.08 38.19 3.53
964 4795 4.039730 TCTCTTCTCCGATGAATGGATTCC 59.960 45.833 0.00 0.00 35.97 3.01
965 4796 5.207110 TCTCTTCTCCGATGAATGGATTC 57.793 43.478 0.00 0.00 34.32 2.52
966 4797 5.365025 TCTTCTCTTCTCCGATGAATGGATT 59.635 40.000 0.00 0.00 34.32 3.01
967 4798 4.898265 TCTTCTCTTCTCCGATGAATGGAT 59.102 41.667 0.00 0.00 34.32 3.41
968 4799 4.281657 TCTTCTCTTCTCCGATGAATGGA 58.718 43.478 0.00 0.00 0.00 3.41
969 4800 4.340666 TCTCTTCTCTTCTCCGATGAATGG 59.659 45.833 0.00 0.00 0.00 3.16
970 4801 5.512753 TCTCTTCTCTTCTCCGATGAATG 57.487 43.478 0.00 0.00 0.00 2.67
971 4802 5.890985 TCTTCTCTTCTCTTCTCCGATGAAT 59.109 40.000 0.00 0.00 0.00 2.57
972 4803 5.257262 TCTTCTCTTCTCTTCTCCGATGAA 58.743 41.667 0.00 0.00 0.00 2.57
973 4804 4.849518 TCTTCTCTTCTCTTCTCCGATGA 58.150 43.478 0.00 0.00 0.00 2.92
974 4805 5.574891 TTCTTCTCTTCTCTTCTCCGATG 57.425 43.478 0.00 0.00 0.00 3.84
975 4806 6.435904 TCTTTTCTTCTCTTCTCTTCTCCGAT 59.564 38.462 0.00 0.00 0.00 4.18
976 4807 5.770663 TCTTTTCTTCTCTTCTCTTCTCCGA 59.229 40.000 0.00 0.00 0.00 4.55
977 4808 6.019779 TCTTTTCTTCTCTTCTCTTCTCCG 57.980 41.667 0.00 0.00 0.00 4.63
978 4809 6.313658 GCATCTTTTCTTCTCTTCTCTTCTCC 59.686 42.308 0.00 0.00 0.00 3.71
979 4810 7.063780 CAGCATCTTTTCTTCTCTTCTCTTCTC 59.936 40.741 0.00 0.00 0.00 2.87
980 4811 6.875195 CAGCATCTTTTCTTCTCTTCTCTTCT 59.125 38.462 0.00 0.00 0.00 2.85
981 4812 6.402442 GCAGCATCTTTTCTTCTCTTCTCTTC 60.402 42.308 0.00 0.00 0.00 2.87
982 4813 5.412286 GCAGCATCTTTTCTTCTCTTCTCTT 59.588 40.000 0.00 0.00 0.00 2.85
983 4814 4.937015 GCAGCATCTTTTCTTCTCTTCTCT 59.063 41.667 0.00 0.00 0.00 3.10
984 4815 4.094739 GGCAGCATCTTTTCTTCTCTTCTC 59.905 45.833 0.00 0.00 0.00 2.87
985 4816 4.009002 GGCAGCATCTTTTCTTCTCTTCT 58.991 43.478 0.00 0.00 0.00 2.85
986 4817 4.009002 AGGCAGCATCTTTTCTTCTCTTC 58.991 43.478 0.00 0.00 0.00 2.87
987 4818 4.031636 AGGCAGCATCTTTTCTTCTCTT 57.968 40.909 0.00 0.00 0.00 2.85
988 4819 3.717452 AGGCAGCATCTTTTCTTCTCT 57.283 42.857 0.00 0.00 0.00 3.10
989 4820 3.119566 CCAAGGCAGCATCTTTTCTTCTC 60.120 47.826 0.00 0.00 0.00 2.87
990 4821 2.824341 CCAAGGCAGCATCTTTTCTTCT 59.176 45.455 0.00 0.00 0.00 2.85
991 4822 2.821969 TCCAAGGCAGCATCTTTTCTTC 59.178 45.455 0.00 0.00 0.00 2.87
992 4823 2.880443 TCCAAGGCAGCATCTTTTCTT 58.120 42.857 0.00 0.00 0.00 2.52
993 4824 2.592102 TCCAAGGCAGCATCTTTTCT 57.408 45.000 0.00 0.00 0.00 2.52
994 4825 3.022406 AGATCCAAGGCAGCATCTTTTC 58.978 45.455 0.00 0.00 0.00 2.29
995 4826 3.097342 AGATCCAAGGCAGCATCTTTT 57.903 42.857 0.00 0.00 0.00 2.27
996 4827 2.822707 AGATCCAAGGCAGCATCTTT 57.177 45.000 0.00 0.00 0.00 2.52
997 4828 2.025605 TGAAGATCCAAGGCAGCATCTT 60.026 45.455 4.91 4.91 38.12 2.40
998 4829 1.562942 TGAAGATCCAAGGCAGCATCT 59.437 47.619 0.00 0.00 0.00 2.90
999 4830 1.948145 CTGAAGATCCAAGGCAGCATC 59.052 52.381 0.00 0.00 0.00 3.91
1000 4831 2.054232 CTGAAGATCCAAGGCAGCAT 57.946 50.000 0.00 0.00 0.00 3.79
1001 4832 3.564262 CTGAAGATCCAAGGCAGCA 57.436 52.632 0.00 0.00 0.00 4.41
1002 4833 2.105124 GCTGAAGATCCAAGGCAGC 58.895 57.895 0.00 0.00 44.11 5.25
1472 5554 5.650266 TGGCTAACTGAAACTGAAACTGAAA 59.350 36.000 0.00 0.00 0.00 2.69
1473 5555 5.189928 TGGCTAACTGAAACTGAAACTGAA 58.810 37.500 0.00 0.00 0.00 3.02
1474 5556 4.776349 TGGCTAACTGAAACTGAAACTGA 58.224 39.130 0.00 0.00 0.00 3.41
1475 5557 5.695851 ATGGCTAACTGAAACTGAAACTG 57.304 39.130 0.00 0.00 0.00 3.16
1476 5558 7.817418 TTAATGGCTAACTGAAACTGAAACT 57.183 32.000 0.00 0.00 0.00 2.66
1477 5559 9.476202 AATTTAATGGCTAACTGAAACTGAAAC 57.524 29.630 0.00 0.00 0.00 2.78
1478 5560 9.691362 GAATTTAATGGCTAACTGAAACTGAAA 57.309 29.630 0.00 0.00 0.00 2.69
1479 5561 9.077885 AGAATTTAATGGCTAACTGAAACTGAA 57.922 29.630 0.00 0.00 0.00 3.02
1480 5562 8.635765 AGAATTTAATGGCTAACTGAAACTGA 57.364 30.769 0.00 0.00 0.00 3.41
1481 5563 9.346725 GAAGAATTTAATGGCTAACTGAAACTG 57.653 33.333 0.00 0.00 0.00 3.16
1482 5564 9.301897 AGAAGAATTTAATGGCTAACTGAAACT 57.698 29.630 0.00 0.00 0.00 2.66
1712 5989 0.747283 CTTCAGATCCCAGTGGCTGC 60.747 60.000 2.61 0.00 0.00 5.25
1771 6572 5.753921 GGATGTCATGTAAGCTACAGTAACC 59.246 44.000 0.00 0.00 42.77 2.85
1772 6573 5.753921 GGGATGTCATGTAAGCTACAGTAAC 59.246 44.000 0.00 0.00 42.77 2.50
1773 6574 5.661312 AGGGATGTCATGTAAGCTACAGTAA 59.339 40.000 0.00 0.00 42.77 2.24
1774 6575 5.208890 AGGGATGTCATGTAAGCTACAGTA 58.791 41.667 0.00 0.00 42.77 2.74
1775 6576 4.033709 AGGGATGTCATGTAAGCTACAGT 58.966 43.478 0.00 0.00 42.77 3.55
1776 6577 4.679373 AGGGATGTCATGTAAGCTACAG 57.321 45.455 0.00 0.00 42.77 2.74
1777 6578 4.469586 TCAAGGGATGTCATGTAAGCTACA 59.530 41.667 0.00 0.00 43.80 2.74
1778 6579 5.023533 TCAAGGGATGTCATGTAAGCTAC 57.976 43.478 0.00 0.00 0.00 3.58
1779 6580 4.101585 CCTCAAGGGATGTCATGTAAGCTA 59.898 45.833 0.00 0.00 37.23 3.32
1780 6581 3.118112 CCTCAAGGGATGTCATGTAAGCT 60.118 47.826 0.00 0.00 37.23 3.74
1781 6582 3.118261 TCCTCAAGGGATGTCATGTAAGC 60.118 47.826 0.00 0.00 39.58 3.09
1782 6583 4.760530 TCCTCAAGGGATGTCATGTAAG 57.239 45.455 0.00 0.00 39.58 2.34
1794 6595 3.326297 GGATCCTCTAACATCCTCAAGGG 59.674 52.174 3.84 0.00 36.39 3.95
1795 6596 3.006323 CGGATCCTCTAACATCCTCAAGG 59.994 52.174 10.75 0.00 37.08 3.61
1796 6597 3.891977 TCGGATCCTCTAACATCCTCAAG 59.108 47.826 10.75 0.00 37.08 3.02
1797 6598 3.910989 TCGGATCCTCTAACATCCTCAA 58.089 45.455 10.75 0.00 37.08 3.02
1798 6599 3.595190 TCGGATCCTCTAACATCCTCA 57.405 47.619 10.75 0.00 37.08 3.86
1799 6600 4.081917 GGAATCGGATCCTCTAACATCCTC 60.082 50.000 10.75 0.00 37.08 3.71
1800 6601 3.835395 GGAATCGGATCCTCTAACATCCT 59.165 47.826 10.75 0.00 37.08 3.24
1801 6602 3.367498 CGGAATCGGATCCTCTAACATCC 60.367 52.174 10.75 6.82 37.34 3.51
1802 6603 3.839293 CGGAATCGGATCCTCTAACATC 58.161 50.000 10.75 0.00 37.34 3.06
1803 6604 3.944055 CGGAATCGGATCCTCTAACAT 57.056 47.619 10.75 0.00 37.34 2.71
1816 6617 0.460284 ACACAAGCTAGCCGGAATCG 60.460 55.000 12.13 0.00 0.00 3.34
1817 6618 1.398390 CAACACAAGCTAGCCGGAATC 59.602 52.381 12.13 0.00 0.00 2.52
1818 6619 1.003118 TCAACACAAGCTAGCCGGAAT 59.997 47.619 12.13 0.00 0.00 3.01
1819 6620 0.394938 TCAACACAAGCTAGCCGGAA 59.605 50.000 12.13 0.00 0.00 4.30
1820 6621 0.613260 ATCAACACAAGCTAGCCGGA 59.387 50.000 12.13 0.00 0.00 5.14
1821 6622 1.131126 CAATCAACACAAGCTAGCCGG 59.869 52.381 12.13 6.38 0.00 6.13
1822 6623 1.131126 CCAATCAACACAAGCTAGCCG 59.869 52.381 12.13 5.56 0.00 5.52
1856 6657 0.940126 GCGTGCCAACCATGATCTAG 59.060 55.000 0.00 0.00 31.89 2.43
1861 6662 2.593148 AACGCGTGCCAACCATGA 60.593 55.556 14.98 0.00 31.89 3.07
1862 6663 2.428902 CAACGCGTGCCAACCATG 60.429 61.111 14.98 0.00 0.00 3.66
1880 6681 1.003545 CGTCAAAATAGATGGGCGCAG 60.004 52.381 10.83 0.00 0.00 5.18
1881 6682 1.013596 CGTCAAAATAGATGGGCGCA 58.986 50.000 10.83 5.70 0.00 6.09
1882 6683 1.295792 TCGTCAAAATAGATGGGCGC 58.704 50.000 0.00 0.00 0.00 6.53
1883 6684 4.556233 TCTATCGTCAAAATAGATGGGCG 58.444 43.478 0.00 0.00 32.18 6.13
1884 6685 6.650807 TCATTCTATCGTCAAAATAGATGGGC 59.349 38.462 0.00 0.00 36.03 5.36
1885 6686 8.783833 ATCATTCTATCGTCAAAATAGATGGG 57.216 34.615 0.00 0.00 36.03 4.00
1914 6715 5.010617 ACCAATGGTGCGTTTATCTCTTTTT 59.989 36.000 3.09 0.00 32.98 1.94
1915 6716 4.522789 ACCAATGGTGCGTTTATCTCTTTT 59.477 37.500 3.09 0.00 32.98 2.27
1916 6717 4.079253 ACCAATGGTGCGTTTATCTCTTT 58.921 39.130 3.09 0.00 32.98 2.52
1917 6718 3.686016 ACCAATGGTGCGTTTATCTCTT 58.314 40.909 3.09 0.00 32.98 2.85
1918 6719 3.270877 GACCAATGGTGCGTTTATCTCT 58.729 45.455 10.84 0.00 35.25 3.10
1919 6720 3.006940 TGACCAATGGTGCGTTTATCTC 58.993 45.455 10.84 0.00 35.25 2.75
1920 6721 3.066291 TGACCAATGGTGCGTTTATCT 57.934 42.857 10.84 0.00 35.25 1.98
1921 6722 4.104776 CAATGACCAATGGTGCGTTTATC 58.895 43.478 10.84 0.00 35.25 1.75
1922 6723 3.761218 TCAATGACCAATGGTGCGTTTAT 59.239 39.130 10.84 0.00 35.25 1.40
1923 6724 3.149981 TCAATGACCAATGGTGCGTTTA 58.850 40.909 10.84 0.00 35.25 2.01
1924 6725 1.959985 TCAATGACCAATGGTGCGTTT 59.040 42.857 10.84 0.00 35.25 3.60
1925 6726 1.614996 TCAATGACCAATGGTGCGTT 58.385 45.000 10.84 6.58 35.25 4.84
1926 6727 1.269448 GTTCAATGACCAATGGTGCGT 59.731 47.619 10.84 0.00 35.25 5.24
1927 6728 1.541147 AGTTCAATGACCAATGGTGCG 59.459 47.619 10.84 0.00 35.25 5.34
1928 6729 3.665745 AAGTTCAATGACCAATGGTGC 57.334 42.857 10.84 1.99 35.25 5.01
1929 6730 5.629020 CGTAAAAGTTCAATGACCAATGGTG 59.371 40.000 10.84 0.00 35.25 4.17
1930 6731 5.533154 TCGTAAAAGTTCAATGACCAATGGT 59.467 36.000 3.74 3.74 39.44 3.55
1931 6732 6.007936 TCGTAAAAGTTCAATGACCAATGG 57.992 37.500 0.00 0.00 0.00 3.16
1932 6733 6.898041 TCTCGTAAAAGTTCAATGACCAATG 58.102 36.000 0.00 0.00 0.00 2.82
1933 6734 7.390440 TCATCTCGTAAAAGTTCAATGACCAAT 59.610 33.333 0.00 0.00 0.00 3.16
1934 6735 6.708502 TCATCTCGTAAAAGTTCAATGACCAA 59.291 34.615 0.00 0.00 0.00 3.67
1935 6736 6.227522 TCATCTCGTAAAAGTTCAATGACCA 58.772 36.000 0.00 0.00 0.00 4.02
1936 6737 6.673316 GCTCATCTCGTAAAAGTTCAATGACC 60.673 42.308 0.00 0.00 0.00 4.02
1937 6738 6.128553 TGCTCATCTCGTAAAAGTTCAATGAC 60.129 38.462 0.00 0.00 0.00 3.06
1938 6739 5.931724 TGCTCATCTCGTAAAAGTTCAATGA 59.068 36.000 0.00 0.00 0.00 2.57
1939 6740 6.017933 GTGCTCATCTCGTAAAAGTTCAATG 58.982 40.000 0.00 0.00 0.00 2.82
1940 6741 5.700832 TGTGCTCATCTCGTAAAAGTTCAAT 59.299 36.000 0.00 0.00 0.00 2.57
1941 6742 5.053811 TGTGCTCATCTCGTAAAAGTTCAA 58.946 37.500 0.00 0.00 0.00 2.69
1942 6743 4.627058 TGTGCTCATCTCGTAAAAGTTCA 58.373 39.130 0.00 0.00 0.00 3.18
2036 6839 1.427819 CGTTACGGCTGGAAATGGC 59.572 57.895 0.00 0.00 0.00 4.40
2039 6842 1.747745 GCCCGTTACGGCTGGAAAT 60.748 57.895 19.48 0.00 46.86 2.17
2253 7468 4.430423 CGCCACTGTTTCGCGCTC 62.430 66.667 5.56 0.00 39.39 5.03
2286 7501 2.093764 CACCTCCTGTAGCTCCTTTCTG 60.094 54.545 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.