Multiple sequence alignment - TraesCS4A01G492400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G492400 chr4A 100.000 4685 0 0 1 4685 741492250 741487566 0.000000e+00 8652.0
1 TraesCS4A01G492400 chr4A 96.234 2894 94 10 1794 4685 739646194 739649074 0.000000e+00 4726.0
2 TraesCS4A01G492400 chr4A 96.055 2890 99 10 1794 4681 742051332 742054208 0.000000e+00 4691.0
3 TraesCS4A01G492400 chr4A 100.000 2043 0 0 6470 8512 741485781 741483739 0.000000e+00 3773.0
4 TraesCS4A01G492400 chr4A 92.425 1901 102 19 6638 8512 741795937 741794053 0.000000e+00 2675.0
5 TraesCS4A01G492400 chr4A 91.943 1899 111 20 6638 8512 741589018 741590898 0.000000e+00 2621.0
6 TraesCS4A01G492400 chr4A 100.000 1228 0 0 5051 6278 741487200 741485973 0.000000e+00 2268.0
7 TraesCS4A01G492400 chr4A 86.918 2041 190 34 6505 8512 739866095 739868091 0.000000e+00 2218.0
8 TraesCS4A01G492400 chr4A 96.970 1287 37 1 6470 7754 739650473 739651759 0.000000e+00 2159.0
9 TraesCS4A01G492400 chr4A 96.426 1287 44 1 6470 7754 742055752 742057038 0.000000e+00 2121.0
10 TraesCS4A01G492400 chr4A 95.702 1233 46 3 5051 6278 739649206 739650436 0.000000e+00 1977.0
11 TraesCS4A01G492400 chr4A 97.310 1041 22 3 506 1546 741587695 741588729 0.000000e+00 1762.0
12 TraesCS4A01G492400 chr4A 96.011 1078 37 2 5205 6278 742054640 742055715 0.000000e+00 1748.0
13 TraesCS4A01G492400 chr4A 91.611 1192 82 14 6638 7827 740022137 740020962 0.000000e+00 1631.0
14 TraesCS4A01G492400 chr4A 83.780 1307 113 36 7246 8512 740936878 740938125 0.000000e+00 1147.0
15 TraesCS4A01G492400 chr4A 91.459 843 32 12 7163 7981 741817729 741816903 0.000000e+00 1122.0
16 TraesCS4A01G492400 chr4A 87.711 1009 57 32 759 1766 739642631 739643573 0.000000e+00 1114.0
17 TraesCS4A01G492400 chr4A 87.291 1015 64 32 759 1766 742047755 742048711 0.000000e+00 1099.0
18 TraesCS4A01G492400 chr4A 92.779 637 37 4 7877 8512 739651918 739652546 0.000000e+00 913.0
19 TraesCS4A01G492400 chr4A 92.622 637 38 4 7877 8512 742057197 742057825 0.000000e+00 907.0
20 TraesCS4A01G492400 chr4A 89.466 731 57 14 824 1545 740022946 740022227 0.000000e+00 905.0
21 TraesCS4A01G492400 chr4A 87.085 813 68 19 759 1551 739860482 739861277 0.000000e+00 885.0
22 TraesCS4A01G492400 chr4A 96.304 514 19 0 1 514 729777312 729776799 0.000000e+00 845.0
23 TraesCS4A01G492400 chr4A 85.749 821 70 20 759 1559 740566277 740567070 0.000000e+00 824.0
24 TraesCS4A01G492400 chr4A 90.110 637 57 3 7877 8512 740455543 740454912 0.000000e+00 822.0
25 TraesCS4A01G492400 chr4A 89.688 640 58 4 7877 8512 740578910 740579545 0.000000e+00 809.0
26 TraesCS4A01G492400 chr4A 93.269 520 35 0 7993 8512 741815650 741815131 0.000000e+00 767.0
27 TraesCS4A01G492400 chr4A 91.652 551 34 7 998 1545 740926794 740927335 0.000000e+00 752.0
28 TraesCS4A01G492400 chr4A 89.781 548 47 6 998 1545 740268862 740269400 0.000000e+00 693.0
29 TraesCS4A01G492400 chr4A 89.416 548 49 6 998 1545 740346267 740346805 0.000000e+00 682.0
30 TraesCS4A01G492400 chr4A 87.121 264 16 4 506 763 739642429 739642680 5.030000e-72 283.0
31 TraesCS4A01G492400 chr4A 87.170 265 15 4 506 763 742047552 742047804 5.030000e-72 283.0
32 TraesCS4A01G492400 chr4A 93.827 162 9 1 603 763 740566165 740566326 8.540000e-60 243.0
33 TraesCS4A01G492400 chr4A 93.210 162 10 1 603 763 739860370 739860531 3.970000e-58 237.0
34 TraesCS4A01G492400 chr4A 94.444 126 5 2 585 708 740023753 740023628 8.720000e-45 193.0
35 TraesCS4A01G492400 chr4A 90.083 121 12 0 6057 6177 739865729 739865849 3.180000e-34 158.0
36 TraesCS4A01G492400 chr4A 88.372 129 11 2 1662 1787 739920138 739920011 1.480000e-32 152.0
37 TraesCS4A01G492400 chr4A 87.719 57 6 1 1685 1740 719971837 719971781 1.980000e-06 65.8
38 TraesCS4A01G492400 chr7D 91.862 2052 132 14 6470 8512 3788513 3786488 0.000000e+00 2832.0
39 TraesCS4A01G492400 chr7D 84.880 2004 244 35 2704 4683 3791862 3789894 0.000000e+00 1967.0
40 TraesCS4A01G492400 chr7D 93.819 1262 57 9 6638 7880 2611285 2610026 0.000000e+00 1879.0
41 TraesCS4A01G492400 chr7D 91.148 1254 97 6 6470 7716 3634720 3633474 0.000000e+00 1688.0
42 TraesCS4A01G492400 chr7D 87.545 1397 146 15 6500 7876 2567658 2566270 0.000000e+00 1591.0
43 TraesCS4A01G492400 chr7D 89.920 1250 103 12 6471 7716 2359193 2357963 0.000000e+00 1589.0
44 TraesCS4A01G492400 chr7D 81.558 1887 311 23 2492 4349 65498549 65496671 0.000000e+00 1522.0
45 TraesCS4A01G492400 chr7D 88.646 1233 130 8 5051 6278 3635986 3634759 0.000000e+00 1493.0
46 TraesCS4A01G492400 chr7D 87.221 1299 158 7 2502 3797 3638174 3636881 0.000000e+00 1472.0
47 TraesCS4A01G492400 chr7D 88.060 1206 118 13 5078 6278 3789732 3788548 0.000000e+00 1406.0
48 TraesCS4A01G492400 chr7D 81.728 706 88 23 1824 2492 65499286 65498585 1.250000e-152 551.0
49 TraesCS4A01G492400 chr7D 80.000 755 74 45 1796 2492 3639489 3638754 3.570000e-133 486.0
50 TraesCS4A01G492400 chr7D 85.903 454 44 12 2058 2492 3792603 3792151 4.650000e-127 466.0
51 TraesCS4A01G492400 chr7D 89.535 258 27 0 2492 2749 3792115 3791858 2.290000e-85 327.0
52 TraesCS4A01G492400 chr7D 85.409 281 29 5 4228 4499 3636521 3636244 1.810000e-71 281.0
53 TraesCS4A01G492400 chr7D 88.889 189 17 4 1834 2020 65494371 65494185 6.650000e-56 230.0
54 TraesCS4A01G492400 chr7D 86.747 83 9 1 1651 1731 3897850 3897932 3.270000e-14 91.6
55 TraesCS4A01G492400 chr7D 95.833 48 2 0 1709 1756 3639616 3639569 2.550000e-10 78.7
56 TraesCS4A01G492400 chr7A 86.543 2051 212 35 6505 8511 3311105 3313135 0.000000e+00 2200.0
57 TraesCS4A01G492400 chr7A 88.897 1387 119 14 6500 7855 3633085 3631703 0.000000e+00 1676.0
58 TraesCS4A01G492400 chr7A 89.669 1239 115 6 6471 7703 2119068 2117837 0.000000e+00 1567.0
59 TraesCS4A01G492400 chr7A 87.141 801 66 15 759 1545 3285039 3285816 0.000000e+00 874.0
60 TraesCS4A01G492400 chr7A 80.690 1072 199 7 2492 3560 50387585 50386519 0.000000e+00 826.0
61 TraesCS4A01G492400 chr7A 88.660 582 54 9 987 1565 2002643 2002071 0.000000e+00 699.0
62 TraesCS4A01G492400 chr7A 93.798 258 12 3 506 763 3284835 3285088 1.340000e-102 385.0
63 TraesCS4A01G492400 chr7A 100.000 29 0 0 6471 6499 96056854 96056826 4.000000e-03 54.7
64 TraesCS4A01G492400 chr7A 94.118 34 2 0 2869 2902 504980996 504980963 1.500000e-02 52.8
65 TraesCS4A01G492400 chr3D 82.042 1871 301 22 2492 4334 268526972 268525109 0.000000e+00 1561.0
66 TraesCS4A01G492400 chr3D 85.005 967 107 17 5051 5979 170548594 170549560 0.000000e+00 948.0
67 TraesCS4A01G492400 chr3D 88.136 649 71 5 5339 5981 601219923 601220571 0.000000e+00 767.0
68 TraesCS4A01G492400 chr3D 87.172 647 78 3 5333 5974 520675615 520674969 0.000000e+00 730.0
69 TraesCS4A01G492400 chr3D 81.423 506 63 14 1841 2316 569059734 569060238 1.340000e-102 385.0
70 TraesCS4A01G492400 chr3D 86.102 295 39 2 5051 5344 520675933 520675640 4.960000e-82 316.0
71 TraesCS4A01G492400 chr3D 89.831 177 16 2 1841 2016 268522968 268522793 8.600000e-55 226.0
72 TraesCS4A01G492400 chr3D 85.294 170 24 1 1841 2010 569060343 569060511 3.160000e-39 174.0
73 TraesCS4A01G492400 chr3D 80.672 119 19 4 2337 2454 197410341 197410456 1.180000e-13 89.8
74 TraesCS4A01G492400 chr1A 79.530 1871 322 35 2492 4349 43328608 43330430 0.000000e+00 1277.0
75 TraesCS4A01G492400 chr1A 85.326 184 25 2 1834 2016 43332514 43332696 1.130000e-43 189.0
76 TraesCS4A01G492400 chr1A 92.308 39 3 0 1716 1754 31793179 31793141 1.000000e-03 56.5
77 TraesCS4A01G492400 chrUn 83.488 969 120 20 5052 5982 91007442 91006476 0.000000e+00 867.0
78 TraesCS4A01G492400 chr2B 96.267 509 18 1 1 509 128380144 128379637 0.000000e+00 833.0
79 TraesCS4A01G492400 chr2B 93.529 510 30 1 1 507 733878082 733878591 0.000000e+00 756.0
80 TraesCS4A01G492400 chr2B 92.607 514 35 2 1 513 158635702 158635191 0.000000e+00 736.0
81 TraesCS4A01G492400 chr2B 92.731 509 34 3 1 509 581454994 581454489 0.000000e+00 732.0
82 TraesCS4A01G492400 chr2B 86.505 289 37 2 5051 5338 496601789 496601502 4.960000e-82 316.0
83 TraesCS4A01G492400 chr2B 76.939 477 87 12 2492 2964 36507023 36507480 5.100000e-62 250.0
84 TraesCS4A01G492400 chr3B 95.098 510 25 0 1 510 478015434 478014925 0.000000e+00 804.0
85 TraesCS4A01G492400 chr3B 94.912 511 23 3 1 510 29845861 29845353 0.000000e+00 797.0
86 TraesCS4A01G492400 chr3B 93.688 507 29 2 1 507 191185596 191186099 0.000000e+00 756.0
87 TraesCS4A01G492400 chr3B 78.619 753 138 11 3618 4349 228427497 228426747 2.150000e-130 477.0
88 TraesCS4A01G492400 chr3B 87.542 297 35 2 5051 5346 679984387 679984092 8.180000e-90 342.0
89 TraesCS4A01G492400 chr3B 87.543 289 34 2 5051 5338 802296328 802296615 4.920000e-87 333.0
90 TraesCS4A01G492400 chr3B 80.128 468 57 18 2058 2492 228438332 228437868 4.960000e-82 316.0
91 TraesCS4A01G492400 chr5B 93.945 512 24 6 1 509 531741168 531740661 0.000000e+00 767.0
92 TraesCS4A01G492400 chr5B 100.000 29 0 0 6471 6499 710749321 710749349 4.000000e-03 54.7
93 TraesCS4A01G492400 chr6A 88.043 644 67 9 5337 5974 430576077 430576716 0.000000e+00 754.0
94 TraesCS4A01G492400 chr6A 87.797 295 34 2 5051 5344 430575755 430576048 2.270000e-90 344.0
95 TraesCS4A01G492400 chr1B 86.505 289 37 2 5051 5338 257509570 257509283 4.960000e-82 316.0
96 TraesCS4A01G492400 chr1B 90.476 42 2 2 6471 6511 489638289 489638329 4.000000e-03 54.7
97 TraesCS4A01G492400 chr7B 82.540 189 21 7 1582 1764 708483449 708483267 1.140000e-33 156.0
98 TraesCS4A01G492400 chr2D 70.180 721 185 23 2755 3463 62971470 62970768 6.980000e-21 113.0
99 TraesCS4A01G492400 chr6D 74.699 249 59 4 3855 4101 379054946 379055192 3.250000e-19 108.0
100 TraesCS4A01G492400 chr1D 100.000 29 0 0 6471 6499 493903609 493903637 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G492400 chr4A 741483739 741492250 8511 True 4897.666667 8652 100.000000 1 8512 3 chr4A.!!$R7 8511
1 TraesCS4A01G492400 chr4A 741794053 741795937 1884 True 2675.000000 2675 92.425000 6638 8512 1 chr4A.!!$R5 1874
2 TraesCS4A01G492400 chr4A 741587695 741590898 3203 False 2191.500000 2621 94.626500 506 8512 2 chr4A.!!$F10 8006
3 TraesCS4A01G492400 chr4A 739642429 739652546 10117 False 1862.000000 4726 92.752833 506 8512 6 chr4A.!!$F6 8006
4 TraesCS4A01G492400 chr4A 742047552 742057825 10273 False 1808.166667 4691 92.595833 506 8512 6 chr4A.!!$F11 8006
5 TraesCS4A01G492400 chr4A 739865729 739868091 2362 False 1188.000000 2218 88.500500 6057 8512 2 chr4A.!!$F8 2455
6 TraesCS4A01G492400 chr4A 740936878 740938125 1247 False 1147.000000 1147 83.780000 7246 8512 1 chr4A.!!$F5 1266
7 TraesCS4A01G492400 chr4A 741815131 741817729 2598 True 944.500000 1122 92.364000 7163 8512 2 chr4A.!!$R8 1349
8 TraesCS4A01G492400 chr4A 740020962 740023753 2791 True 909.666667 1631 91.840333 585 7827 3 chr4A.!!$R6 7242
9 TraesCS4A01G492400 chr4A 729776799 729777312 513 True 845.000000 845 96.304000 1 514 1 chr4A.!!$R2 513
10 TraesCS4A01G492400 chr4A 740454912 740455543 631 True 822.000000 822 90.110000 7877 8512 1 chr4A.!!$R4 635
11 TraesCS4A01G492400 chr4A 740578910 740579545 635 False 809.000000 809 89.688000 7877 8512 1 chr4A.!!$F3 635
12 TraesCS4A01G492400 chr4A 740926794 740927335 541 False 752.000000 752 91.652000 998 1545 1 chr4A.!!$F4 547
13 TraesCS4A01G492400 chr4A 740268862 740269400 538 False 693.000000 693 89.781000 998 1545 1 chr4A.!!$F1 547
14 TraesCS4A01G492400 chr4A 740346267 740346805 538 False 682.000000 682 89.416000 998 1545 1 chr4A.!!$F2 547
15 TraesCS4A01G492400 chr4A 739860370 739861277 907 False 561.000000 885 90.147500 603 1551 2 chr4A.!!$F7 948
16 TraesCS4A01G492400 chr4A 740566165 740567070 905 False 533.500000 824 89.788000 603 1559 2 chr4A.!!$F9 956
17 TraesCS4A01G492400 chr7D 2610026 2611285 1259 True 1879.000000 1879 93.819000 6638 7880 1 chr7D.!!$R3 1242
18 TraesCS4A01G492400 chr7D 2566270 2567658 1388 True 1591.000000 1591 87.545000 6500 7876 1 chr7D.!!$R2 1376
19 TraesCS4A01G492400 chr7D 2357963 2359193 1230 True 1589.000000 1589 89.920000 6471 7716 1 chr7D.!!$R1 1245
20 TraesCS4A01G492400 chr7D 3786488 3792603 6115 True 1399.600000 2832 88.048000 2058 8512 5 chr7D.!!$R5 6454
21 TraesCS4A01G492400 chr7D 3633474 3639616 6142 True 916.450000 1688 88.042833 1709 7716 6 chr7D.!!$R4 6007
22 TraesCS4A01G492400 chr7D 65494185 65499286 5101 True 767.666667 1522 84.058333 1824 4349 3 chr7D.!!$R6 2525
23 TraesCS4A01G492400 chr7A 3311105 3313135 2030 False 2200.000000 2200 86.543000 6505 8511 1 chr7A.!!$F1 2006
24 TraesCS4A01G492400 chr7A 3631703 3633085 1382 True 1676.000000 1676 88.897000 6500 7855 1 chr7A.!!$R3 1355
25 TraesCS4A01G492400 chr7A 2117837 2119068 1231 True 1567.000000 1567 89.669000 6471 7703 1 chr7A.!!$R2 1232
26 TraesCS4A01G492400 chr7A 50386519 50387585 1066 True 826.000000 826 80.690000 2492 3560 1 chr7A.!!$R4 1068
27 TraesCS4A01G492400 chr7A 2002071 2002643 572 True 699.000000 699 88.660000 987 1565 1 chr7A.!!$R1 578
28 TraesCS4A01G492400 chr7A 3284835 3285816 981 False 629.500000 874 90.469500 506 1545 2 chr7A.!!$F2 1039
29 TraesCS4A01G492400 chr3D 170548594 170549560 966 False 948.000000 948 85.005000 5051 5979 1 chr3D.!!$F1 928
30 TraesCS4A01G492400 chr3D 268522793 268526972 4179 True 893.500000 1561 85.936500 1841 4334 2 chr3D.!!$R1 2493
31 TraesCS4A01G492400 chr3D 601219923 601220571 648 False 767.000000 767 88.136000 5339 5981 1 chr3D.!!$F3 642
32 TraesCS4A01G492400 chr3D 520674969 520675933 964 True 523.000000 730 86.637000 5051 5974 2 chr3D.!!$R2 923
33 TraesCS4A01G492400 chr3D 569059734 569060511 777 False 279.500000 385 83.358500 1841 2316 2 chr3D.!!$F4 475
34 TraesCS4A01G492400 chr1A 43328608 43332696 4088 False 733.000000 1277 82.428000 1834 4349 2 chr1A.!!$F1 2515
35 TraesCS4A01G492400 chrUn 91006476 91007442 966 True 867.000000 867 83.488000 5052 5982 1 chrUn.!!$R1 930
36 TraesCS4A01G492400 chr2B 128379637 128380144 507 True 833.000000 833 96.267000 1 509 1 chr2B.!!$R1 508
37 TraesCS4A01G492400 chr2B 733878082 733878591 509 False 756.000000 756 93.529000 1 507 1 chr2B.!!$F2 506
38 TraesCS4A01G492400 chr2B 158635191 158635702 511 True 736.000000 736 92.607000 1 513 1 chr2B.!!$R2 512
39 TraesCS4A01G492400 chr2B 581454489 581454994 505 True 732.000000 732 92.731000 1 509 1 chr2B.!!$R4 508
40 TraesCS4A01G492400 chr3B 478014925 478015434 509 True 804.000000 804 95.098000 1 510 1 chr3B.!!$R4 509
41 TraesCS4A01G492400 chr3B 29845353 29845861 508 True 797.000000 797 94.912000 1 510 1 chr3B.!!$R1 509
42 TraesCS4A01G492400 chr3B 191185596 191186099 503 False 756.000000 756 93.688000 1 507 1 chr3B.!!$F1 506
43 TraesCS4A01G492400 chr3B 228426747 228427497 750 True 477.000000 477 78.619000 3618 4349 1 chr3B.!!$R2 731
44 TraesCS4A01G492400 chr5B 531740661 531741168 507 True 767.000000 767 93.945000 1 509 1 chr5B.!!$R1 508
45 TraesCS4A01G492400 chr6A 430575755 430576716 961 False 549.000000 754 87.920000 5051 5974 2 chr6A.!!$F1 923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.243907 CTCGGCTTCCTCTGTTTCGA 59.756 55.000 0.00 0.0 0.00 3.71 F
1456 2155 0.389817 CGACTCCCGCAACAAGATGA 60.390 55.000 0.00 0.0 0.00 2.92 F
1764 2687 1.002087 GGCAAGTACACACACCTAGCT 59.998 52.381 0.00 0.0 0.00 3.32 F
3397 7595 0.591170 CAGGTTTGTTCGCCGTCAAT 59.409 50.000 0.00 0.0 0.00 2.57 F
3911 8118 0.526524 GAGAACTCTGCCGGTCGATG 60.527 60.000 1.90 0.0 0.00 3.84 F
5234 9481 0.474466 CAGGCTGGAGGGATGGGATA 60.474 60.000 6.61 0.0 0.00 2.59 F
5789 10107 0.931468 TCCTCGGAGGAATGGAGGTA 59.069 55.000 24.17 0.0 42.51 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 2545 0.039617 GCACAAGCACATGCCGTTTA 60.040 50.000 0.00 0.0 43.38 2.01 R
3392 7590 0.179081 GAGGAGTACCGGGCATTGAC 60.179 60.000 6.32 0.0 41.83 3.18 R
3573 7772 0.753848 AAACCAACACAACCCCGAGG 60.754 55.000 0.00 0.0 40.04 4.63 R
4507 8743 0.108424 CGTGAGGGGAAGAAGAGCAG 60.108 60.000 0.00 0.0 0.00 4.24 R
5697 10015 0.535335 GGGAACGACCACTGATAGCA 59.465 55.000 0.00 0.0 41.20 3.49 R
7062 11475 0.473755 TGCCACTTGAGCCTCTTTGA 59.526 50.000 0.00 0.0 0.00 2.69 R
7744 12166 1.134995 CAGCACCTGTAGCGATTCTGA 60.135 52.381 0.00 0.0 37.01 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.003718 GCGCTGTACTTCCACCCTT 60.004 57.895 0.00 0.00 0.00 3.95
65 66 0.732880 CTTCACTCGGCGTTCGACAT 60.733 55.000 6.85 0.00 43.74 3.06
110 111 0.243907 CTCGGCTTCCTCTGTTTCGA 59.756 55.000 0.00 0.00 0.00 3.71
271 281 2.883386 AGTGAGAAAAGAGGCAGCAAAG 59.117 45.455 0.00 0.00 0.00 2.77
443 453 2.966309 GCGCGACTGGGGACTTTTG 61.966 63.158 12.10 0.00 0.00 2.44
445 455 1.164041 CGCGACTGGGGACTTTTGTT 61.164 55.000 0.00 0.00 0.00 2.83
537 547 3.839778 CCTTAGGAGGGGTGAAAAACAA 58.160 45.455 0.00 0.00 39.55 2.83
1456 2155 0.389817 CGACTCCCGCAACAAGATGA 60.390 55.000 0.00 0.00 0.00 2.92
1600 2523 1.821216 GCTAAACCCTGCTGCTGTTA 58.179 50.000 0.00 0.00 0.00 2.41
1601 2524 2.369394 GCTAAACCCTGCTGCTGTTAT 58.631 47.619 0.00 0.00 0.00 1.89
1602 2525 2.755103 GCTAAACCCTGCTGCTGTTATT 59.245 45.455 0.00 0.00 0.00 1.40
1603 2526 3.193479 GCTAAACCCTGCTGCTGTTATTT 59.807 43.478 0.00 3.60 0.00 1.40
1604 2527 4.321974 GCTAAACCCTGCTGCTGTTATTTT 60.322 41.667 0.00 0.11 0.00 1.82
1605 2528 3.942130 AACCCTGCTGCTGTTATTTTC 57.058 42.857 0.00 0.00 0.00 2.29
1606 2529 3.160679 ACCCTGCTGCTGTTATTTTCT 57.839 42.857 0.00 0.00 0.00 2.52
1607 2530 3.500343 ACCCTGCTGCTGTTATTTTCTT 58.500 40.909 0.00 0.00 0.00 2.52
1608 2531 4.662278 ACCCTGCTGCTGTTATTTTCTTA 58.338 39.130 0.00 0.00 0.00 2.10
1609 2532 4.459337 ACCCTGCTGCTGTTATTTTCTTAC 59.541 41.667 0.00 0.00 0.00 2.34
1610 2533 4.458989 CCCTGCTGCTGTTATTTTCTTACA 59.541 41.667 0.00 0.00 0.00 2.41
1611 2534 5.048083 CCCTGCTGCTGTTATTTTCTTACAA 60.048 40.000 0.00 0.00 0.00 2.41
1612 2535 6.088824 CCTGCTGCTGTTATTTTCTTACAAG 58.911 40.000 0.00 0.00 0.00 3.16
1613 2536 6.294176 CCTGCTGCTGTTATTTTCTTACAAGT 60.294 38.462 0.00 0.00 0.00 3.16
1614 2537 7.038154 TGCTGCTGTTATTTTCTTACAAGTT 57.962 32.000 0.00 0.00 0.00 2.66
1615 2538 8.160521 TGCTGCTGTTATTTTCTTACAAGTTA 57.839 30.769 0.00 0.00 0.00 2.24
1616 2539 8.289618 TGCTGCTGTTATTTTCTTACAAGTTAG 58.710 33.333 0.00 0.00 0.00 2.34
1617 2540 7.271438 GCTGCTGTTATTTTCTTACAAGTTAGC 59.729 37.037 0.00 0.00 0.00 3.09
1618 2541 8.160521 TGCTGTTATTTTCTTACAAGTTAGCA 57.839 30.769 0.00 0.00 0.00 3.49
1619 2542 8.625651 TGCTGTTATTTTCTTACAAGTTAGCAA 58.374 29.630 0.00 0.00 0.00 3.91
1620 2543 9.458374 GCTGTTATTTTCTTACAAGTTAGCAAA 57.542 29.630 0.00 0.00 0.00 3.68
1634 2557 5.160641 AGTTAGCAAAATAAACGGCATGTG 58.839 37.500 0.00 0.00 0.00 3.21
1639 2562 3.658757 AAATAAACGGCATGTGCTTGT 57.341 38.095 4.84 1.60 41.70 3.16
1646 2569 2.256391 GCATGTGCTTGTGCCTGTA 58.744 52.632 0.00 0.00 38.71 2.74
1759 2682 2.943653 GCGGCAAGTACACACACC 59.056 61.111 0.00 0.00 0.00 4.16
1763 2686 1.439679 GGCAAGTACACACACCTAGC 58.560 55.000 0.00 0.00 0.00 3.42
1764 2687 1.002087 GGCAAGTACACACACCTAGCT 59.998 52.381 0.00 0.00 0.00 3.32
1769 2692 3.165875 AGTACACACACCTAGCTCACAT 58.834 45.455 0.00 0.00 0.00 3.21
1913 5439 5.186198 ACAGTTTGATAGTACAGCCATTCC 58.814 41.667 0.00 0.00 0.00 3.01
2016 5543 1.613925 CCACCAGATATCCGTCGACAT 59.386 52.381 17.16 4.93 0.00 3.06
2163 5719 8.343168 TCCCAAATAAAATGTATGTCGAGTTT 57.657 30.769 0.00 0.00 0.00 2.66
2245 5802 3.505184 CAATACACGCCGTGGCCC 61.505 66.667 22.60 0.00 37.94 5.80
2511 6665 4.643387 GTGCTGGTCCTGCGGGTT 62.643 66.667 12.43 0.00 0.00 4.11
2520 6674 1.078497 CCTGCGGGTTGTGCATCTA 60.078 57.895 2.29 0.00 42.32 1.98
2738 6892 1.319374 CGTATTTGTACTGCGACACGG 59.681 52.381 0.00 0.00 0.00 4.94
2779 6975 1.447838 GACGCTGATGCCGAGGAAA 60.448 57.895 0.00 0.00 35.36 3.13
2979 7175 1.153901 CGACCGTGCATAGGAACGT 60.154 57.895 16.71 0.00 44.95 3.99
3029 7225 2.266055 GCTTGAGGCCGTACAGCT 59.734 61.111 10.89 0.00 34.27 4.24
3092 7288 1.838568 GAAGTCGGCCGGTTGTTGAC 61.839 60.000 27.83 14.42 0.00 3.18
3214 7410 5.638596 TGAACTATAGCAGACTTGACGAA 57.361 39.130 0.00 0.00 0.00 3.85
3270 7466 1.812686 TTACGAGAAGCCGTGCACCT 61.813 55.000 12.15 1.08 43.27 4.00
3392 7590 2.943653 GTCCAGGTTTGTTCGCCG 59.056 61.111 0.00 0.00 0.00 6.46
3397 7595 0.591170 CAGGTTTGTTCGCCGTCAAT 59.409 50.000 0.00 0.00 0.00 2.57
3587 7786 4.280019 GGCCCTCGGGGTTGTGTT 62.280 66.667 0.00 0.00 46.51 3.32
3668 7870 4.443934 CGAGAGGGAGGTGGAGTT 57.556 61.111 0.00 0.00 0.00 3.01
3691 7893 3.962530 ATCGGATGGGGGTGGGTGT 62.963 63.158 0.00 0.00 0.00 4.16
3911 8118 0.526524 GAGAACTCTGCCGGTCGATG 60.527 60.000 1.90 0.00 0.00 3.84
3968 8181 1.434696 CCGAGAAACATGCATGGCC 59.565 57.895 29.41 17.36 0.00 5.36
4096 8309 2.191128 AGAATGGAGTGAGGTTGTGC 57.809 50.000 0.00 0.00 0.00 4.57
4200 8427 5.144100 TGTGGACAATGTCATTTAGGGTTT 58.856 37.500 15.86 0.00 33.68 3.27
4215 8442 8.723311 CATTTAGGGTTTGTAAGATACGTTCAA 58.277 33.333 0.00 0.00 0.00 2.69
4307 8534 5.180271 TCACGGGTGGAGTTATTATCAAAC 58.820 41.667 0.00 0.00 0.00 2.93
4335 8567 7.858879 CGGCCCATTGTATATTTTAAGTGTTAC 59.141 37.037 0.00 0.00 0.00 2.50
4375 8608 1.163408 ATAGACTCCCTCCTCCTCCC 58.837 60.000 0.00 0.00 0.00 4.30
4376 8609 1.354168 TAGACTCCCTCCTCCTCCCG 61.354 65.000 0.00 0.00 0.00 5.14
4598 8843 2.194597 GGGCCGGGCAACATGATA 59.805 61.111 30.95 0.00 39.74 2.15
4671 8917 1.015609 TCTCCAGGGATGGTAGGTCA 58.984 55.000 0.00 0.00 0.00 4.02
5175 9422 4.749310 CGTGGAGCTGCCTTCGCT 62.749 66.667 1.53 0.00 41.15 4.93
5234 9481 0.474466 CAGGCTGGAGGGATGGGATA 60.474 60.000 6.61 0.00 0.00 2.59
5247 9494 1.028330 TGGGATACGTCGACGAGCTT 61.028 55.000 41.52 23.13 43.02 3.74
5255 9502 4.680237 CGACGAGCTTGGGCCACA 62.680 66.667 5.23 0.00 39.73 4.17
5260 9507 3.177884 AGCTTGGGCCACACCTCA 61.178 61.111 5.23 0.00 39.73 3.86
5268 9515 2.666190 CCACACCTCACTGGCACG 60.666 66.667 0.00 0.00 40.22 5.34
5289 9536 4.388499 GTGTGTCGGCCCGGATGT 62.388 66.667 0.73 0.00 0.00 3.06
5460 9777 1.890510 GTTCACGGCCGGAACTTGT 60.891 57.895 33.66 13.10 41.05 3.16
5558 9876 1.610554 GGGTGAGCGTGCTAGGGTAA 61.611 60.000 0.00 0.00 0.00 2.85
5608 9926 2.124151 GGCGGCTTCCATGGACAT 60.124 61.111 15.91 0.00 0.00 3.06
5672 9990 1.609072 GAGTTGCTCTGGGTGAAAACC 59.391 52.381 0.00 0.00 0.00 3.27
5697 10015 1.987807 CTTGGGATCGGATGGTGGCT 61.988 60.000 0.00 0.00 0.00 4.75
5789 10107 0.931468 TCCTCGGAGGAATGGAGGTA 59.069 55.000 24.17 0.00 42.51 3.08
5830 10148 5.163540 GGTTCGTCCTCACTCATATGTAGTT 60.164 44.000 1.90 0.00 0.00 2.24
6047 10370 1.056660 GGGGAGAACTTCAGACACCA 58.943 55.000 0.00 0.00 0.00 4.17
6238 10625 8.196771 ACTTTCTCTTTGCATGTGTGATTTTTA 58.803 29.630 0.00 0.00 0.00 1.52
6239 10626 9.199982 CTTTCTCTTTGCATGTGTGATTTTTAT 57.800 29.630 0.00 0.00 0.00 1.40
6242 10629 8.791675 TCTCTTTGCATGTGTGATTTTTATGTA 58.208 29.630 0.00 0.00 0.00 2.29
6248 10637 9.566530 TGCATGTGTGATTTTTATGTATGTTAC 57.433 29.630 0.00 0.00 0.00 2.50
6908 11321 2.139118 GCCGCATACCTTGAAGATCTC 58.861 52.381 0.00 0.00 0.00 2.75
7062 11475 7.667219 ACCACAAGATGACTCATGTTAAGATTT 59.333 33.333 1.25 0.00 31.20 2.17
7267 11680 3.767673 GACAGATACCAGGTCCACTGTTA 59.232 47.826 20.17 0.00 46.06 2.41
7327 11740 3.451004 GATGCCAATGCCGCCACA 61.451 61.111 0.00 0.00 36.33 4.17
7352 11765 3.269538 TGTGAGAAAACTTGTTCCGGA 57.730 42.857 0.00 0.00 0.00 5.14
7511 11926 2.754012 TGGGGAGGCAATTCCATTAG 57.246 50.000 3.91 0.00 39.09 1.73
7537 11952 1.611519 TTCATCCGGGTGTCCAAAAC 58.388 50.000 15.92 0.00 0.00 2.43
7611 12026 1.600636 CCCCAAGCAAGCGAAGACA 60.601 57.895 0.00 0.00 0.00 3.41
7642 12057 6.304356 TGAACTTCACATTACTGCTGAAAG 57.696 37.500 0.00 0.00 0.00 2.62
7744 12166 5.772672 TGTACTGCTTATTTTCCACATGGTT 59.227 36.000 0.00 0.00 36.34 3.67
7752 12193 4.764679 TTTTCCACATGGTTCAGAATCG 57.235 40.909 0.00 0.00 36.34 3.34
7827 12677 9.171877 AGTCAATTTCTGAAAAGATGTATCTCC 57.828 33.333 6.95 0.00 33.77 3.71
7834 12684 6.152831 TCTGAAAAGATGTATCTCCGACAAGA 59.847 38.462 0.00 0.00 35.76 3.02
7923 12846 5.175859 GCACTAACTTGATGCTGGTAGTAA 58.824 41.667 0.00 0.00 36.40 2.24
7924 12847 5.063564 GCACTAACTTGATGCTGGTAGTAAC 59.936 44.000 0.00 0.00 36.40 2.50
7925 12848 5.288712 CACTAACTTGATGCTGGTAGTAACG 59.711 44.000 0.00 0.00 0.00 3.18
7926 12849 3.955650 ACTTGATGCTGGTAGTAACGT 57.044 42.857 0.00 0.00 0.00 3.99
8006 14272 7.875041 TCATTCTTTCCTAGCATATCTAACTGC 59.125 37.037 0.00 0.00 38.69 4.40
8045 14315 3.750652 ACGCATAAATGTGACATGTGTGA 59.249 39.130 15.56 0.00 40.77 3.58
8071 14341 4.469586 TCTTGACATGCAGGTACCTAATCA 59.530 41.667 15.80 13.20 0.00 2.57
8097 14367 9.818270 ATTGTTGATGATTTATGGGATACATCT 57.182 29.630 0.00 0.00 41.03 2.90
8410 15673 5.674525 TGCCTTCTGTATCAGTGGATTTAG 58.325 41.667 12.50 0.00 34.89 1.85
8452 15715 4.143242 CGCTAGTGTCTTGTTTGTCATCAG 60.143 45.833 0.00 0.00 0.00 2.90
8458 15721 6.204301 AGTGTCTTGTTTGTCATCAGATTCAG 59.796 38.462 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 1.330521 CGCCGAAGAAATACACCATGG 59.669 52.381 11.19 11.19 0.00 3.66
382 392 1.528309 CTCGGGCCAAAACTGGTGT 60.528 57.895 4.39 0.00 0.00 4.16
437 447 4.279043 GCCGGCGCCAACAAAAGT 62.279 61.111 28.98 0.00 0.00 2.66
537 547 1.078709 CGCGACAAGACCATTCATGT 58.921 50.000 0.00 0.00 36.37 3.21
1456 2155 4.448720 TCTCAAGAATGCCATGATCCAT 57.551 40.909 0.00 0.00 0.00 3.41
1559 2437 3.120782 CGCATCAAGAAAAGAAAAGCAGC 59.879 43.478 0.00 0.00 0.00 5.25
1602 2525 9.453325 CCGTTTATTTTGCTAACTTGTAAGAAA 57.547 29.630 0.00 0.00 0.00 2.52
1603 2526 7.592164 GCCGTTTATTTTGCTAACTTGTAAGAA 59.408 33.333 0.00 0.00 0.00 2.52
1604 2527 7.079475 GCCGTTTATTTTGCTAACTTGTAAGA 58.921 34.615 0.00 0.00 0.00 2.10
1605 2528 6.858993 TGCCGTTTATTTTGCTAACTTGTAAG 59.141 34.615 0.00 0.00 0.00 2.34
1606 2529 6.736123 TGCCGTTTATTTTGCTAACTTGTAA 58.264 32.000 0.00 0.00 0.00 2.41
1607 2530 6.315091 TGCCGTTTATTTTGCTAACTTGTA 57.685 33.333 0.00 0.00 0.00 2.41
1608 2531 5.189659 TGCCGTTTATTTTGCTAACTTGT 57.810 34.783 0.00 0.00 0.00 3.16
1609 2532 5.633182 ACATGCCGTTTATTTTGCTAACTTG 59.367 36.000 0.00 0.00 0.00 3.16
1610 2533 5.633182 CACATGCCGTTTATTTTGCTAACTT 59.367 36.000 0.00 0.00 0.00 2.66
1611 2534 5.160641 CACATGCCGTTTATTTTGCTAACT 58.839 37.500 0.00 0.00 0.00 2.24
1612 2535 4.201580 GCACATGCCGTTTATTTTGCTAAC 60.202 41.667 0.00 0.00 34.31 2.34
1613 2536 3.923461 GCACATGCCGTTTATTTTGCTAA 59.077 39.130 0.00 0.00 34.31 3.09
1614 2537 3.192422 AGCACATGCCGTTTATTTTGCTA 59.808 39.130 0.00 0.00 43.38 3.49
1615 2538 2.029110 AGCACATGCCGTTTATTTTGCT 60.029 40.909 0.00 0.00 43.38 3.91
1616 2539 2.336667 AGCACATGCCGTTTATTTTGC 58.663 42.857 0.00 0.00 43.38 3.68
1617 2540 3.740321 ACAAGCACATGCCGTTTATTTTG 59.260 39.130 0.00 0.00 43.38 2.44
1618 2541 3.740321 CACAAGCACATGCCGTTTATTTT 59.260 39.130 0.00 0.00 43.38 1.82
1619 2542 3.316283 CACAAGCACATGCCGTTTATTT 58.684 40.909 0.00 0.00 43.38 1.40
1620 2543 2.926159 GCACAAGCACATGCCGTTTATT 60.926 45.455 0.00 0.00 43.38 1.40
1621 2544 1.402720 GCACAAGCACATGCCGTTTAT 60.403 47.619 0.00 0.00 43.38 1.40
1622 2545 0.039617 GCACAAGCACATGCCGTTTA 60.040 50.000 0.00 0.00 43.38 2.01
1634 2557 2.096496 GTCATCATGTACAGGCACAAGC 59.904 50.000 1.79 0.00 41.10 4.01
1639 2562 2.305635 ACCAAGTCATCATGTACAGGCA 59.694 45.455 1.79 0.00 0.00 4.75
1644 2567 2.860735 GCTCGACCAAGTCATCATGTAC 59.139 50.000 0.00 0.00 32.09 2.90
1646 2569 1.552337 AGCTCGACCAAGTCATCATGT 59.448 47.619 0.00 0.00 32.09 3.21
1759 2682 2.342651 CACGACGTTTGATGTGAGCTAG 59.657 50.000 0.00 0.00 34.29 3.42
1763 2686 0.790207 CCCACGACGTTTGATGTGAG 59.210 55.000 0.00 0.00 34.29 3.51
1764 2687 0.389757 TCCCACGACGTTTGATGTGA 59.610 50.000 0.00 0.00 34.29 3.58
1769 2692 0.967662 TACCATCCCACGACGTTTGA 59.032 50.000 0.00 0.00 0.00 2.69
1863 5389 1.227089 AGAGCTAACGCATCGGCAG 60.227 57.895 0.00 0.00 41.24 4.85
2016 5543 2.435938 GCTCAAACGATGGCGGGA 60.436 61.111 0.00 0.00 43.17 5.14
2163 5719 1.227793 TGACGCACCAAGCACATCA 60.228 52.632 0.00 0.00 46.13 3.07
2758 6954 2.125952 CTCGGCATCAGCGTCACA 60.126 61.111 0.00 0.00 43.41 3.58
2779 6975 4.897051 AGGACCTTGGACCTCTACATTAT 58.103 43.478 4.89 0.00 0.00 1.28
2979 7175 2.112297 GGTTTGACAGGTCCGCCA 59.888 61.111 0.00 0.00 37.19 5.69
3029 7225 1.751351 CATCTGCCTCCTCGACAAGTA 59.249 52.381 0.00 0.00 0.00 2.24
3092 7288 1.374343 TAGCCGAGCGTGTCTACTGG 61.374 60.000 0.00 0.00 0.00 4.00
3156 7352 2.094659 CCACGTTGCTAGACTGCCG 61.095 63.158 0.00 0.00 0.00 5.69
3214 7410 4.202367 ACTTCGATGAAACCTTCAGTCCTT 60.202 41.667 5.16 0.00 43.98 3.36
3270 7466 1.063070 TGGTACAAAGCCAGGTGGGA 61.063 55.000 0.00 0.00 34.06 4.37
3392 7590 0.179081 GAGGAGTACCGGGCATTGAC 60.179 60.000 6.32 0.00 41.83 3.18
3397 7595 2.363795 CAGGAGGAGTACCGGGCA 60.364 66.667 6.32 0.00 41.83 5.36
3573 7772 0.753848 AAACCAACACAACCCCGAGG 60.754 55.000 0.00 0.00 40.04 4.63
3587 7786 3.589542 CCCCCTCCTGCCAAACCA 61.590 66.667 0.00 0.00 0.00 3.67
3668 7870 2.042095 ACCCCCATCCGATCACCA 59.958 61.111 0.00 0.00 0.00 4.17
3691 7893 1.894466 CCTTGTGCCAATCATCACCAA 59.106 47.619 0.00 0.00 32.51 3.67
3876 8083 6.919115 CAGAGTTCTCATCTCATGTCATGTAG 59.081 42.308 12.54 8.84 34.73 2.74
3911 8118 0.674581 GGGTACCGTTGCTACAACCC 60.675 60.000 14.57 14.57 40.86 4.11
4171 8398 4.589216 AATGACATTGTCCACAACCTTG 57.411 40.909 14.05 0.00 38.86 3.61
4307 8534 6.262273 ACACTTAAAATATACAATGGGCCGAG 59.738 38.462 0.00 0.00 0.00 4.63
4463 8697 4.351054 CGCCCAGTCAAGCCCCTT 62.351 66.667 0.00 0.00 0.00 3.95
4507 8743 0.108424 CGTGAGGGGAAGAAGAGCAG 60.108 60.000 0.00 0.00 0.00 4.24
5234 9481 4.719369 GCCCAAGCTCGTCGACGT 62.719 66.667 34.40 15.71 40.80 4.34
5247 9494 3.569210 CCAGTGAGGTGTGGCCCA 61.569 66.667 0.00 0.00 38.26 5.36
5289 9536 2.284405 GAGGAGGGGGAACGGACA 60.284 66.667 0.00 0.00 0.00 4.02
5441 9758 1.890041 CAAGTTCCGGCCGTGAACA 60.890 57.895 37.80 18.11 43.57 3.18
5558 9876 6.408869 CCAATAAAAGATTGGGCAAGTGATT 58.591 36.000 8.22 0.00 43.58 2.57
5608 9926 3.490933 CGGAGCCTTCATGAAAGATACGA 60.491 47.826 19.78 0.00 37.12 3.43
5697 10015 0.535335 GGGAACGACCACTGATAGCA 59.465 55.000 0.00 0.00 41.20 3.49
5789 10107 2.436646 CGCTTGGAGCCAACGGAT 60.437 61.111 12.99 0.00 38.18 4.18
5830 10148 0.981183 ACCCGAATGACTACCAAGCA 59.019 50.000 0.00 0.00 0.00 3.91
6248 10637 8.820933 CATGAGTAGGATACACACAATAAACAG 58.179 37.037 0.00 0.00 44.60 3.16
6930 11343 3.536164 CCAACACTTGGCTGCCAA 58.464 55.556 30.49 30.49 45.17 4.52
6944 11357 3.245016 ACTCATGTGCCTCTTTCATCCAA 60.245 43.478 0.00 0.00 0.00 3.53
7062 11475 0.473755 TGCCACTTGAGCCTCTTTGA 59.526 50.000 0.00 0.00 0.00 2.69
7267 11680 1.221840 CTTGCCACCGAGGTGCTAT 59.778 57.895 16.39 0.00 44.16 2.97
7327 11740 3.381590 GGAACAAGTTTTCTCACAAGGCT 59.618 43.478 0.00 0.00 0.00 4.58
7352 11765 5.509840 GCTCATCCGACCATCAATTACTAGT 60.510 44.000 0.00 0.00 0.00 2.57
7511 11926 4.796495 ACCCGGATGAAAGCCCGC 62.796 66.667 0.73 0.00 41.45 6.13
7611 12026 6.148480 GCAGTAATGTGAAGTTCATCAGAAGT 59.852 38.462 9.18 2.64 39.06 3.01
7642 12057 8.097038 TCTTGGCATGTAGATAATTCCTGATAC 58.903 37.037 0.00 0.00 0.00 2.24
7716 12138 6.995511 TGTGGAAAATAAGCAGTACATACC 57.004 37.500 0.00 0.00 0.00 2.73
7744 12166 1.134995 CAGCACCTGTAGCGATTCTGA 60.135 52.381 0.00 0.00 37.01 3.27
7752 12193 3.436700 AAACAAAACAGCACCTGTAGC 57.563 42.857 0.00 0.00 44.62 3.58
7822 12672 5.655488 CTCACTGTAAATCTTGTCGGAGAT 58.345 41.667 0.00 0.00 40.67 2.75
7827 12677 4.237724 TCAGCTCACTGTAAATCTTGTCG 58.762 43.478 0.00 0.00 44.77 4.35
7882 12805 7.769044 AGTTAGTGCTGACTTGAAGAGTAAAAA 59.231 33.333 0.00 0.00 39.19 1.94
8006 14272 1.993370 GCGTCAGGCTAACAGTAACAG 59.007 52.381 0.00 0.00 39.11 3.16
8045 14315 4.307032 AGGTACCTGCATGTCAAGAATT 57.693 40.909 15.42 0.00 0.00 2.17
8071 14341 9.818270 AGATGTATCCCATAAATCATCAACAAT 57.182 29.630 0.00 0.00 32.86 2.71
8097 14367 5.387788 AGCTGATTAATAACATCCCATGCA 58.612 37.500 0.00 0.00 0.00 3.96
8275 14976 7.279615 TCTTCAGGACAGTTAATTTCAGAACA 58.720 34.615 0.00 0.00 0.00 3.18
8285 15445 7.873719 TGTTTCAATTCTTCAGGACAGTTAA 57.126 32.000 0.00 0.00 0.00 2.01
8410 15673 3.618594 AGCGAATCATGTATGTGTGTCAC 59.381 43.478 0.00 0.00 34.56 3.67
8452 15715 4.926238 TCTCGTTCTTTCTGAAGCTGAATC 59.074 41.667 0.00 0.00 35.01 2.52
8458 15721 3.804873 ACTTGTCTCGTTCTTTCTGAAGC 59.195 43.478 0.00 0.00 35.01 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.