Multiple sequence alignment - TraesCS4A01G491600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G491600 chr4A 100.000 6080 0 0 1 6080 741157934 741164013 0.000000e+00 11228.0
1 TraesCS4A01G491600 chr4A 97.309 5499 90 11 600 6080 733989591 733995049 0.000000e+00 9282.0
2 TraesCS4A01G491600 chr4A 85.967 2202 299 9 2018 4214 742144561 742146757 0.000000e+00 2346.0
3 TraesCS4A01G491600 chr4A 85.922 2202 300 9 2018 4214 739906283 739908479 0.000000e+00 2340.0
4 TraesCS4A01G491600 chr4A 85.416 2201 314 7 2018 4214 733871892 733869695 0.000000e+00 2279.0
5 TraesCS4A01G491600 chr4A 82.348 2555 415 32 1700 4234 713505779 713503241 0.000000e+00 2187.0
6 TraesCS4A01G491600 chr4A 81.368 1111 179 21 961 2058 739905660 739906755 0.000000e+00 880.0
7 TraesCS4A01G491600 chr4A 81.098 1111 182 21 961 2058 742143938 742145033 0.000000e+00 863.0
8 TraesCS4A01G491600 chr4A 85.490 827 114 6 2018 2841 741851021 741851844 0.000000e+00 857.0
9 TraesCS4A01G491600 chr4A 80.744 1075 188 14 995 2061 741850433 741851496 0.000000e+00 821.0
10 TraesCS4A01G491600 chr4A 80.589 984 166 18 1092 2064 733872383 733871414 0.000000e+00 736.0
11 TraesCS4A01G491600 chr4A 84.441 572 56 11 16 580 733988690 733989235 3.230000e-147 532.0
12 TraesCS4A01G491600 chr4A 84.718 373 54 2 5082 5452 598785705 598786076 2.680000e-98 370.0
13 TraesCS4A01G491600 chr4A 78.917 517 105 4 1979 2493 733990538 733991052 1.250000e-91 348.0
14 TraesCS4A01G491600 chr4A 77.756 517 108 6 1979 2493 741159483 741159994 1.650000e-80 311.0
15 TraesCS4A01G491600 chr4A 80.475 379 69 3 4708 5082 733869624 733869247 9.970000e-73 285.0
16 TraesCS4A01G491600 chr4A 80.577 381 65 6 4708 5082 742146828 742147205 9.970000e-73 285.0
17 TraesCS4A01G491600 chr4A 80.052 381 67 7 4708 5082 739908550 739908927 2.160000e-69 274.0
18 TraesCS4A01G491600 chr4A 76.154 520 115 8 1732 2245 739740684 739741200 1.300000e-66 265.0
19 TraesCS4A01G491600 chr4A 78.261 299 65 0 2195 2493 739740718 739741016 6.220000e-45 193.0
20 TraesCS4A01G491600 chr4A 86.301 146 14 6 5803 5946 17723363 17723222 2.930000e-33 154.0
21 TraesCS4A01G491600 chr4A 86.538 52 5 1 6007 6056 741849898 741849949 8.510000e-04 56.5
22 TraesCS4A01G491600 chr7A 81.870 2813 462 40 1448 4234 19516279 19519069 0.000000e+00 2326.0
23 TraesCS4A01G491600 chr7A 84.890 1906 272 15 2339 4234 3139051 3140950 0.000000e+00 1910.0
24 TraesCS4A01G491600 chr7A 87.601 371 40 2 5083 5452 31695444 31695809 5.630000e-115 425.0
25 TraesCS4A01G491600 chr7A 84.932 365 52 3 5088 5451 706025247 706025609 3.460000e-97 366.0
26 TraesCS4A01G491600 chr7A 84.267 375 54 5 5083 5454 102089517 102089145 1.610000e-95 361.0
27 TraesCS4A01G491600 chr7A 81.232 341 56 5 1083 1422 19515845 19516178 1.000000e-67 268.0
28 TraesCS4A01G491600 chr7A 82.550 149 20 4 5799 5943 487704840 487704986 6.400000e-25 126.0
29 TraesCS4A01G491600 chr7A 95.714 70 2 1 5798 5867 669219911 669219979 1.790000e-20 111.0
30 TraesCS4A01G491600 chr7D 86.064 2167 291 9 2055 4214 2442954 2440792 0.000000e+00 2318.0
31 TraesCS4A01G491600 chr7D 82.302 2554 418 31 1700 4234 19050320 19052858 0.000000e+00 2182.0
32 TraesCS4A01G491600 chr7D 80.448 1115 194 16 961 2064 2443614 2442513 0.000000e+00 830.0
33 TraesCS4A01G491600 chr7D 84.225 374 55 3 5083 5453 636913648 636914020 1.610000e-95 361.0
34 TraesCS4A01G491600 chr7D 80.670 388 70 2 4700 5082 3845712 3845325 4.610000e-76 296.0
35 TraesCS4A01G491600 chr7D 77.167 473 87 14 959 1422 19049651 19050111 7.820000e-64 255.0
36 TraesCS4A01G491600 chrUn 80.104 960 159 21 970 1914 221199259 221198317 0.000000e+00 686.0
37 TraesCS4A01G491600 chrUn 79.979 969 162 21 961 1914 318474478 318475429 0.000000e+00 686.0
38 TraesCS4A01G491600 chrUn 79.331 658 117 13 1268 1914 232070716 232071365 1.560000e-120 444.0
39 TraesCS4A01G491600 chr3A 86.721 369 47 2 5083 5451 733629943 733630309 5.670000e-110 409.0
40 TraesCS4A01G491600 chr3A 82.550 149 20 4 5799 5943 25406135 25406281 6.400000e-25 126.0
41 TraesCS4A01G491600 chr5D 84.636 371 54 3 5083 5452 495884524 495884892 3.460000e-97 366.0
42 TraesCS4A01G491600 chr5D 80.597 335 65 0 4731 5065 246009985 246009651 6.050000e-65 259.0
43 TraesCS4A01G491600 chr4D 84.085 377 53 5 5083 5454 3254897 3254523 2.080000e-94 357.0
44 TraesCS4A01G491600 chr5B 82.124 386 60 3 4697 5082 280603534 280603158 7.600000e-84 322.0
45 TraesCS4A01G491600 chr5B 81.602 337 55 5 4731 5065 280647665 280647334 7.770000e-69 272.0
46 TraesCS4A01G491600 chr5A 81.586 353 65 0 4731 5083 329992437 329992085 5.960000e-75 292.0
47 TraesCS4A01G491600 chr1D 90.698 86 5 3 5802 5886 8608304 8608387 1.790000e-20 111.0
48 TraesCS4A01G491600 chr7B 91.892 74 5 1 5794 5867 640079056 640079128 1.080000e-17 102.0
49 TraesCS4A01G491600 chr7B 91.892 74 5 1 5794 5867 640138299 640138371 1.080000e-17 102.0
50 TraesCS4A01G491600 chr4B 91.892 74 5 1 5802 5875 446834161 446834089 1.080000e-17 102.0
51 TraesCS4A01G491600 chr2A 92.188 64 5 0 5878 5941 22023115 22023178 2.330000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G491600 chr4A 741157934 741164013 6079 False 11228.000000 11228 100.000000 1 6080 1 chr4A.!!$F3 6079
1 TraesCS4A01G491600 chr4A 733988690 733995049 6359 False 4907.000000 9282 90.875000 16 6080 2 chr4A.!!$F5 6064
2 TraesCS4A01G491600 chr4A 713503241 713505779 2538 True 2187.000000 2187 82.348000 1700 4234 1 chr4A.!!$R2 2534
3 TraesCS4A01G491600 chr4A 739905660 739908927 3267 False 1164.666667 2340 82.447333 961 5082 3 chr4A.!!$F7 4121
4 TraesCS4A01G491600 chr4A 742143938 742147205 3267 False 1164.666667 2346 82.547333 961 5082 3 chr4A.!!$F9 4121
5 TraesCS4A01G491600 chr4A 733869247 733872383 3136 True 1100.000000 2279 82.160000 1092 5082 3 chr4A.!!$R3 3990
6 TraesCS4A01G491600 chr4A 741849898 741851844 1946 False 578.166667 857 84.257333 995 6056 3 chr4A.!!$F8 5061
7 TraesCS4A01G491600 chr4A 733990538 733991052 514 False 348.000000 348 78.917000 1979 2493 1 chr4A.!!$F2 514
8 TraesCS4A01G491600 chr4A 741159483 741159994 511 False 311.000000 311 77.756000 1979 2493 1 chr4A.!!$F4 514
9 TraesCS4A01G491600 chr4A 739740684 739741200 516 False 229.000000 265 77.207500 1732 2493 2 chr4A.!!$F6 761
10 TraesCS4A01G491600 chr7A 3139051 3140950 1899 False 1910.000000 1910 84.890000 2339 4234 1 chr7A.!!$F1 1895
11 TraesCS4A01G491600 chr7A 19515845 19519069 3224 False 1297.000000 2326 81.551000 1083 4234 2 chr7A.!!$F6 3151
12 TraesCS4A01G491600 chr7D 2440792 2443614 2822 True 1574.000000 2318 83.256000 961 4214 2 chr7D.!!$R2 3253
13 TraesCS4A01G491600 chr7D 19049651 19052858 3207 False 1218.500000 2182 79.734500 959 4234 2 chr7D.!!$F2 3275
14 TraesCS4A01G491600 chrUn 221198317 221199259 942 True 686.000000 686 80.104000 970 1914 1 chrUn.!!$R1 944
15 TraesCS4A01G491600 chrUn 318474478 318475429 951 False 686.000000 686 79.979000 961 1914 1 chrUn.!!$F2 953
16 TraesCS4A01G491600 chrUn 232070716 232071365 649 False 444.000000 444 79.331000 1268 1914 1 chrUn.!!$F1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 415 0.034337 TGTACTTTCCCCGCTGACAC 59.966 55.000 0.00 0.00 0.00 3.67 F
1794 2382 0.252012 ATGGGCAAATTCCACGGGAA 60.252 50.000 7.67 7.67 46.39 3.97 F
1929 2517 0.035439 GACTCTCCGGCCAAATTCCA 60.035 55.000 2.24 0.00 0.00 3.53 F
1930 2518 0.404040 ACTCTCCGGCCAAATTCCAA 59.596 50.000 2.24 0.00 0.00 3.53 F
1932 2520 0.695924 TCTCCGGCCAAATTCCAAGA 59.304 50.000 2.24 0.00 0.00 3.02 F
1934 2522 0.695924 TCCGGCCAAATTCCAAGAGA 59.304 50.000 2.24 0.00 0.00 3.10 F
1935 2523 1.074727 TCCGGCCAAATTCCAAGAGAA 59.925 47.619 2.24 0.00 39.32 2.87 F
1995 2583 1.418334 ACAACACACTCTCAGGCTCT 58.582 50.000 0.00 0.00 0.00 4.09 F
2154 3030 1.457346 GTTCCATCCCAGACAGCTTG 58.543 55.000 0.00 0.00 0.00 4.01 F
4406 5867 2.353323 TCTGCAGCAGACATTAGCTTG 58.647 47.619 21.85 0.00 39.50 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1910 2498 0.035439 TGGAATTTGGCCGGAGAGTC 60.035 55.000 5.05 0.0 0.00 3.36 R
2796 4248 1.705186 AGTTTGTAGCACTCACCCCAT 59.295 47.619 0.00 0.0 0.00 4.00 R
2984 4436 1.880027 GCATATTTCCCCGCAGTAAGG 59.120 52.381 0.00 0.0 0.00 2.69 R
3077 4529 2.637382 TGGCAGTGTCCAATTGAGTCTA 59.363 45.455 7.12 0.0 32.18 2.59 R
3328 4780 3.619419 TGTTGTATGACACATCCATGGG 58.381 45.455 13.02 0.0 36.90 4.00 R
3971 5431 8.739039 CATCACAAACAATATTTAACCTCCTCA 58.261 33.333 0.00 0.0 0.00 3.86 R
4483 5944 8.673711 GTCATGTAACAAAATACATAGCTTCCA 58.326 33.333 0.00 0.0 43.00 3.53 R
4534 5995 3.485463 TGAACTTTGGAGACGGAATGT 57.515 42.857 0.00 0.0 0.00 2.71 R
4535 5996 4.829064 TTTGAACTTTGGAGACGGAATG 57.171 40.909 0.00 0.0 0.00 2.67 R
5820 7288 0.736636 GTACCATTTTAGCGGCACCC 59.263 55.000 1.45 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 7.444183 AGTCGAACCTCTGTATTTGATTTTCAA 59.556 33.333 0.00 0.00 34.03 2.69
54 55 8.792633 TCGAACCTCTGTATTTGATTTTCAATT 58.207 29.630 0.00 0.00 36.11 2.32
67 68 6.355747 TGATTTTCAATTCTTTTTGCAGGGT 58.644 32.000 0.00 0.00 0.00 4.34
88 89 8.695456 CAGGGTAATATTGGCTATCAAAGTTTT 58.305 33.333 0.00 0.00 39.05 2.43
89 90 8.914011 AGGGTAATATTGGCTATCAAAGTTTTC 58.086 33.333 0.00 0.00 39.05 2.29
90 91 8.691797 GGGTAATATTGGCTATCAAAGTTTTCA 58.308 33.333 0.00 0.00 39.05 2.69
119 120 8.967664 TTATAATGGAAGTATACGCAAAACCT 57.032 30.769 0.00 0.00 27.82 3.50
127 128 4.626225 CGCAAAACCTGGGTTTCG 57.374 55.556 16.73 10.27 46.22 3.46
131 132 1.001048 GCAAAACCTGGGTTTCGGTAC 60.001 52.381 16.73 3.55 46.22 3.34
132 133 1.264826 CAAAACCTGGGTTTCGGTACG 59.735 52.381 16.73 0.00 46.98 3.67
134 135 3.525230 AAACCTGGGTTTCGGTACGCA 62.525 52.381 11.50 7.21 45.20 5.24
151 152 5.653769 GGTACGCAGGTGGGAGTATATATAA 59.346 44.000 0.37 0.00 0.00 0.98
164 165 7.488471 GGGAGTATATATAAGTTGCAACGCTAG 59.512 40.741 23.21 0.00 0.00 3.42
198 199 9.113838 CATATATATTGGACCATTCAAGCTACC 57.886 37.037 0.00 0.00 0.00 3.18
199 200 2.507407 TTGGACCATTCAAGCTACCC 57.493 50.000 0.00 0.00 0.00 3.69
250 258 3.932089 TGTGATGATGACATTACACACGG 59.068 43.478 14.62 0.00 44.21 4.94
260 268 5.067936 TGACATTACACACGGTTGGAAAAAT 59.932 36.000 0.00 0.00 0.00 1.82
261 269 5.285651 ACATTACACACGGTTGGAAAAATG 58.714 37.500 0.00 0.00 0.00 2.32
270 278 5.293079 CACGGTTGGAAAAATGAACAATGTT 59.707 36.000 0.00 0.00 0.00 2.71
276 284 6.882656 TGGAAAAATGAACAATGTTCCTGAA 58.117 32.000 21.75 5.09 35.58 3.02
284 292 5.976534 TGAACAATGTTCCTGAATTTCAACG 59.023 36.000 21.75 0.00 0.00 4.10
318 326 4.508551 TGAAGAATAGCACATGGATGGT 57.491 40.909 0.00 0.00 0.00 3.55
324 332 4.890158 ATAGCACATGGATGGTATCGAA 57.110 40.909 0.00 0.00 38.59 3.71
330 338 3.199946 ACATGGATGGTATCGAACAACCT 59.800 43.478 13.99 2.86 36.67 3.50
361 369 6.570672 TGTTATGCATACGGTTTACCAAAA 57.429 33.333 5.74 0.00 35.14 2.44
370 378 3.419264 GGTTTACCAAAACGAACCGTT 57.581 42.857 0.00 0.00 44.97 4.44
384 392 2.106683 CCGTTTGCGATGAGGGGTC 61.107 63.158 0.00 0.00 41.33 4.46
400 408 2.089201 GGGTCAATTGTACTTTCCCCG 58.911 52.381 5.13 0.00 0.00 5.73
407 415 0.034337 TGTACTTTCCCCGCTGACAC 59.966 55.000 0.00 0.00 0.00 3.67
426 434 2.124942 CCTCGCCTCCTTGCCTTC 60.125 66.667 0.00 0.00 0.00 3.46
470 478 1.072852 GCCATCTCCTGCCTCATCC 59.927 63.158 0.00 0.00 0.00 3.51
483 491 1.678123 CCTCATCCTGCACTTCACCTG 60.678 57.143 0.00 0.00 0.00 4.00
495 503 2.715532 TTCACCTGCTGACACGCCTC 62.716 60.000 0.00 0.00 0.00 4.70
501 509 4.803426 CTGACACGCCTCGCCTCC 62.803 72.222 0.00 0.00 0.00 4.30
524 532 1.421485 CTTTCTCCGTGCACGCATC 59.579 57.895 33.17 0.00 38.18 3.91
580 588 2.372690 CGCTTCCTTGGACGTGTCG 61.373 63.158 0.00 0.00 0.00 4.35
582 590 2.027625 CTTCCTTGGACGTGTCGCC 61.028 63.158 0.00 0.00 0.00 5.54
586 594 3.220999 CTTGGACGTGTCGCCCTCA 62.221 63.158 0.00 0.00 28.90 3.86
587 595 2.507110 CTTGGACGTGTCGCCCTCAT 62.507 60.000 0.00 0.00 28.90 2.90
590 598 2.994995 ACGTGTCGCCCTCATGGA 60.995 61.111 0.00 0.00 35.39 3.41
591 599 2.202797 CGTGTCGCCCTCATGGAG 60.203 66.667 0.00 0.00 35.39 3.86
601 609 2.699073 CTCATGGAGGACAATGGCG 58.301 57.895 0.00 0.00 0.00 5.69
602 610 0.816825 CTCATGGAGGACAATGGCGG 60.817 60.000 0.00 0.00 0.00 6.13
604 612 3.721370 ATGGAGGACAATGGCGGCC 62.721 63.158 13.32 13.32 0.00 6.13
605 613 4.424711 GGAGGACAATGGCGGCCA 62.425 66.667 26.11 26.11 38.19 5.36
626 969 2.823628 GGAGGACTCCGTTTTGACG 58.176 57.895 2.05 0.00 40.36 4.35
635 978 1.131826 CGTTTTGACGACGATGCCC 59.868 57.895 0.00 0.00 42.82 5.36
639 982 1.225376 TTTGACGACGATGCCCACAC 61.225 55.000 0.00 0.00 0.00 3.82
822 1176 0.604578 CCTACGAAAACTCCCGTGGA 59.395 55.000 0.00 0.00 39.16 4.02
1061 1426 4.077188 GTTGCTGCTGGCGACGAC 62.077 66.667 0.00 0.00 44.29 4.34
1279 1647 2.244117 GATGCGGCTGAGAGGGACAA 62.244 60.000 0.00 0.00 0.00 3.18
1647 2235 9.425248 AATAATCTTTCAGGCAATATTCCAAGA 57.575 29.630 6.68 6.98 0.00 3.02
1648 2236 6.956202 ATCTTTCAGGCAATATTCCAAGAG 57.044 37.500 6.68 1.35 0.00 2.85
1649 2237 6.065976 TCTTTCAGGCAATATTCCAAGAGA 57.934 37.500 6.68 3.03 0.00 3.10
1650 2238 6.484288 TCTTTCAGGCAATATTCCAAGAGAA 58.516 36.000 6.68 0.00 39.32 2.87
1652 2240 7.616935 TCTTTCAGGCAATATTCCAAGAGAATT 59.383 33.333 6.68 0.00 42.86 2.17
1653 2241 8.821686 TTTCAGGCAATATTCCAAGAGAATTA 57.178 30.769 6.68 0.00 42.86 1.40
1654 2242 8.455903 TTCAGGCAATATTCCAAGAGAATTAG 57.544 34.615 6.68 0.00 42.86 1.73
1655 2243 7.000472 TCAGGCAATATTCCAAGAGAATTAGG 59.000 38.462 6.68 0.00 42.86 2.69
1656 2244 6.774656 CAGGCAATATTCCAAGAGAATTAGGT 59.225 38.462 6.68 0.00 42.86 3.08
1657 2245 7.286316 CAGGCAATATTCCAAGAGAATTAGGTT 59.714 37.037 6.68 0.00 42.86 3.50
1658 2246 8.502738 AGGCAATATTCCAAGAGAATTAGGTTA 58.497 33.333 6.68 0.00 42.86 2.85
1659 2247 9.301897 GGCAATATTCCAAGAGAATTAGGTTAT 57.698 33.333 0.00 0.00 42.86 1.89
1698 2286 9.950680 GAAGATTTTGATCTTAGTGAAAACACA 57.049 29.630 1.91 0.00 40.67 3.72
1699 2287 9.736023 AAGATTTTGATCTTAGTGAAAACACAC 57.264 29.630 0.00 0.00 38.97 3.82
1710 2298 4.421058 GTGAAAACACACTTTCAGGTTCC 58.579 43.478 0.00 0.00 44.00 3.62
1711 2299 4.082463 GTGAAAACACACTTTCAGGTTCCA 60.082 41.667 0.00 0.00 44.00 3.53
1712 2300 4.709397 TGAAAACACACTTTCAGGTTCCAT 59.291 37.500 0.00 0.00 39.74 3.41
1713 2301 4.918810 AAACACACTTTCAGGTTCCATC 57.081 40.909 0.00 0.00 0.00 3.51
1714 2302 2.863809 ACACACTTTCAGGTTCCATCC 58.136 47.619 0.00 0.00 0.00 3.51
1715 2303 2.162681 CACACTTTCAGGTTCCATCCC 58.837 52.381 0.00 0.00 0.00 3.85
1716 2304 1.780309 ACACTTTCAGGTTCCATCCCA 59.220 47.619 0.00 0.00 0.00 4.37
1717 2305 2.176798 ACACTTTCAGGTTCCATCCCAA 59.823 45.455 0.00 0.00 0.00 4.12
1718 2306 3.230134 CACTTTCAGGTTCCATCCCAAA 58.770 45.455 0.00 0.00 0.00 3.28
1719 2307 3.005791 CACTTTCAGGTTCCATCCCAAAC 59.994 47.826 0.00 0.00 0.00 2.93
1720 2308 3.230134 CTTTCAGGTTCCATCCCAAACA 58.770 45.455 0.00 0.00 0.00 2.83
1721 2309 2.584835 TCAGGTTCCATCCCAAACAG 57.415 50.000 0.00 0.00 0.00 3.16
1722 2310 0.890683 CAGGTTCCATCCCAAACAGC 59.109 55.000 0.00 0.00 0.00 4.40
1723 2311 0.779997 AGGTTCCATCCCAAACAGCT 59.220 50.000 0.00 0.00 0.00 4.24
1724 2312 1.147817 AGGTTCCATCCCAAACAGCTT 59.852 47.619 0.00 0.00 0.00 3.74
1725 2313 2.378547 AGGTTCCATCCCAAACAGCTTA 59.621 45.455 0.00 0.00 0.00 3.09
1726 2314 2.755103 GGTTCCATCCCAAACAGCTTAG 59.245 50.000 0.00 0.00 0.00 2.18
1727 2315 2.755103 GTTCCATCCCAAACAGCTTAGG 59.245 50.000 0.00 0.00 0.00 2.69
1728 2316 2.274542 TCCATCCCAAACAGCTTAGGA 58.725 47.619 0.00 0.00 0.00 2.94
1729 2317 2.647299 TCCATCCCAAACAGCTTAGGAA 59.353 45.455 0.00 0.00 0.00 3.36
1730 2318 3.075283 TCCATCCCAAACAGCTTAGGAAA 59.925 43.478 0.00 0.00 0.00 3.13
1731 2319 4.026052 CCATCCCAAACAGCTTAGGAAAT 58.974 43.478 0.00 0.00 0.00 2.17
1732 2320 4.467438 CCATCCCAAACAGCTTAGGAAATT 59.533 41.667 0.00 0.00 0.00 1.82
1733 2321 5.046376 CCATCCCAAACAGCTTAGGAAATTT 60.046 40.000 0.00 0.00 0.00 1.82
1734 2322 5.467035 TCCCAAACAGCTTAGGAAATTTG 57.533 39.130 0.00 0.00 0.00 2.32
1735 2323 5.144100 TCCCAAACAGCTTAGGAAATTTGA 58.856 37.500 0.00 0.00 30.35 2.69
1736 2324 5.010617 TCCCAAACAGCTTAGGAAATTTGAC 59.989 40.000 0.00 0.00 30.35 3.18
1737 2325 5.221422 CCCAAACAGCTTAGGAAATTTGACA 60.221 40.000 0.00 0.00 30.35 3.58
1738 2326 6.279882 CCAAACAGCTTAGGAAATTTGACAA 58.720 36.000 0.00 0.00 30.35 3.18
1739 2327 6.760770 CCAAACAGCTTAGGAAATTTGACAAA 59.239 34.615 2.48 2.48 30.35 2.83
1740 2328 7.279758 CCAAACAGCTTAGGAAATTTGACAAAA 59.720 33.333 4.41 0.00 30.35 2.44
1741 2329 7.770801 AACAGCTTAGGAAATTTGACAAAAC 57.229 32.000 4.41 0.22 0.00 2.43
1742 2330 7.112452 ACAGCTTAGGAAATTTGACAAAACT 57.888 32.000 4.41 4.24 0.00 2.66
1743 2331 7.203218 ACAGCTTAGGAAATTTGACAAAACTC 58.797 34.615 4.41 4.59 0.00 3.01
1744 2332 7.147915 ACAGCTTAGGAAATTTGACAAAACTCA 60.148 33.333 4.41 0.00 0.00 3.41
1745 2333 7.168135 CAGCTTAGGAAATTTGACAAAACTCAC 59.832 37.037 4.41 0.35 0.00 3.51
1746 2334 6.420903 GCTTAGGAAATTTGACAAAACTCACC 59.579 38.462 4.41 5.08 0.00 4.02
1747 2335 5.930837 AGGAAATTTGACAAAACTCACCA 57.069 34.783 4.41 0.00 0.00 4.17
1748 2336 5.660460 AGGAAATTTGACAAAACTCACCAC 58.340 37.500 4.41 0.00 0.00 4.16
1749 2337 4.808895 GGAAATTTGACAAAACTCACCACC 59.191 41.667 4.41 0.00 0.00 4.61
1750 2338 5.395214 GGAAATTTGACAAAACTCACCACCT 60.395 40.000 4.41 0.00 0.00 4.00
1751 2339 5.675684 AATTTGACAAAACTCACCACCTT 57.324 34.783 4.41 0.00 0.00 3.50
1752 2340 4.448537 TTTGACAAAACTCACCACCTTG 57.551 40.909 0.00 0.00 0.00 3.61
1753 2341 1.748493 TGACAAAACTCACCACCTTGC 59.252 47.619 0.00 0.00 0.00 4.01
1754 2342 1.748493 GACAAAACTCACCACCTTGCA 59.252 47.619 0.00 0.00 0.00 4.08
1755 2343 2.362077 GACAAAACTCACCACCTTGCAT 59.638 45.455 0.00 0.00 0.00 3.96
1756 2344 2.362077 ACAAAACTCACCACCTTGCATC 59.638 45.455 0.00 0.00 0.00 3.91
1757 2345 2.624838 CAAAACTCACCACCTTGCATCT 59.375 45.455 0.00 0.00 0.00 2.90
1758 2346 2.664402 AACTCACCACCTTGCATCTT 57.336 45.000 0.00 0.00 0.00 2.40
1759 2347 2.664402 ACTCACCACCTTGCATCTTT 57.336 45.000 0.00 0.00 0.00 2.52
1760 2348 2.949447 ACTCACCACCTTGCATCTTTT 58.051 42.857 0.00 0.00 0.00 2.27
1761 2349 3.299503 ACTCACCACCTTGCATCTTTTT 58.700 40.909 0.00 0.00 0.00 1.94
1762 2350 3.068590 ACTCACCACCTTGCATCTTTTTG 59.931 43.478 0.00 0.00 0.00 2.44
1763 2351 3.295093 TCACCACCTTGCATCTTTTTGA 58.705 40.909 0.00 0.00 0.00 2.69
1764 2352 3.318839 TCACCACCTTGCATCTTTTTGAG 59.681 43.478 0.00 0.00 0.00 3.02
1765 2353 3.318839 CACCACCTTGCATCTTTTTGAGA 59.681 43.478 0.00 0.00 39.13 3.27
1766 2354 3.960102 ACCACCTTGCATCTTTTTGAGAA 59.040 39.130 0.00 0.00 38.06 2.87
1767 2355 4.202151 ACCACCTTGCATCTTTTTGAGAAC 60.202 41.667 0.00 0.00 38.06 3.01
1768 2356 4.301628 CACCTTGCATCTTTTTGAGAACC 58.698 43.478 0.00 0.00 38.06 3.62
1769 2357 4.038402 CACCTTGCATCTTTTTGAGAACCT 59.962 41.667 0.00 0.00 38.06 3.50
1770 2358 4.038402 ACCTTGCATCTTTTTGAGAACCTG 59.962 41.667 0.00 0.00 38.06 4.00
1771 2359 3.648339 TGCATCTTTTTGAGAACCTGC 57.352 42.857 0.00 0.00 38.05 4.85
1772 2360 3.225104 TGCATCTTTTTGAGAACCTGCT 58.775 40.909 0.00 0.00 38.27 4.24
1773 2361 3.638160 TGCATCTTTTTGAGAACCTGCTT 59.362 39.130 0.00 0.00 38.27 3.91
1774 2362 4.099881 TGCATCTTTTTGAGAACCTGCTTT 59.900 37.500 0.00 0.00 38.27 3.51
1775 2363 5.301551 TGCATCTTTTTGAGAACCTGCTTTA 59.698 36.000 0.00 0.00 38.27 1.85
1776 2364 6.015180 TGCATCTTTTTGAGAACCTGCTTTAT 60.015 34.615 0.00 0.00 38.27 1.40
1777 2365 6.309737 GCATCTTTTTGAGAACCTGCTTTATG 59.690 38.462 0.00 0.00 38.06 1.90
1778 2366 6.331369 TCTTTTTGAGAACCTGCTTTATGG 57.669 37.500 0.00 0.00 0.00 2.74
1779 2367 5.243730 TCTTTTTGAGAACCTGCTTTATGGG 59.756 40.000 0.00 0.00 0.00 4.00
1780 2368 2.128771 TGAGAACCTGCTTTATGGGC 57.871 50.000 0.00 0.00 0.00 5.36
1781 2369 1.354031 TGAGAACCTGCTTTATGGGCA 59.646 47.619 0.00 0.00 38.10 5.36
1782 2370 2.224992 TGAGAACCTGCTTTATGGGCAA 60.225 45.455 0.00 0.00 39.30 4.52
1783 2371 2.825532 GAGAACCTGCTTTATGGGCAAA 59.174 45.455 0.00 0.00 39.30 3.68
1784 2372 3.444029 AGAACCTGCTTTATGGGCAAAT 58.556 40.909 0.00 0.00 39.30 2.32
1785 2373 3.840078 AGAACCTGCTTTATGGGCAAATT 59.160 39.130 0.00 0.00 39.30 1.82
1786 2374 3.893326 ACCTGCTTTATGGGCAAATTC 57.107 42.857 0.00 0.00 39.30 2.17
1787 2375 2.501316 ACCTGCTTTATGGGCAAATTCC 59.499 45.455 0.00 0.00 39.30 3.01
1788 2376 2.500910 CCTGCTTTATGGGCAAATTCCA 59.499 45.455 0.00 0.00 39.30 3.53
1789 2377 3.524541 CTGCTTTATGGGCAAATTCCAC 58.475 45.455 0.00 0.00 39.30 4.02
1790 2378 2.094286 TGCTTTATGGGCAAATTCCACG 60.094 45.455 0.00 0.00 37.08 4.94
1791 2379 2.738321 GCTTTATGGGCAAATTCCACGG 60.738 50.000 0.00 0.00 37.08 4.94
1792 2380 1.479709 TTATGGGCAAATTCCACGGG 58.520 50.000 0.00 0.00 37.08 5.28
1793 2381 0.626382 TATGGGCAAATTCCACGGGA 59.374 50.000 0.00 0.00 37.08 5.14
1794 2382 0.252012 ATGGGCAAATTCCACGGGAA 60.252 50.000 7.67 7.67 46.39 3.97
1795 2383 1.182385 TGGGCAAATTCCACGGGAAC 61.182 55.000 7.42 0.00 45.07 3.62
1796 2384 0.898326 GGGCAAATTCCACGGGAACT 60.898 55.000 7.42 0.00 45.07 3.01
1797 2385 1.614850 GGGCAAATTCCACGGGAACTA 60.615 52.381 7.42 0.00 45.07 2.24
1798 2386 2.164338 GGCAAATTCCACGGGAACTAA 58.836 47.619 7.42 0.00 45.07 2.24
1799 2387 2.163613 GGCAAATTCCACGGGAACTAAG 59.836 50.000 7.42 1.36 45.07 2.18
1800 2388 2.817844 GCAAATTCCACGGGAACTAAGT 59.182 45.455 7.42 0.00 45.07 2.24
1801 2389 3.254903 GCAAATTCCACGGGAACTAAGTT 59.745 43.478 7.42 0.00 45.07 2.66
1802 2390 4.456566 GCAAATTCCACGGGAACTAAGTTA 59.543 41.667 7.42 0.00 45.07 2.24
1803 2391 5.124936 GCAAATTCCACGGGAACTAAGTTAT 59.875 40.000 7.42 0.00 45.07 1.89
1804 2392 6.349860 GCAAATTCCACGGGAACTAAGTTATT 60.350 38.462 7.42 0.00 45.07 1.40
1805 2393 7.599171 CAAATTCCACGGGAACTAAGTTATTT 58.401 34.615 7.42 0.83 45.07 1.40
1806 2394 6.753107 ATTCCACGGGAACTAAGTTATTTG 57.247 37.500 7.42 0.00 45.07 2.32
1807 2395 4.581868 TCCACGGGAACTAAGTTATTTGG 58.418 43.478 0.00 0.00 0.00 3.28
1808 2396 4.041938 TCCACGGGAACTAAGTTATTTGGT 59.958 41.667 0.00 0.00 30.93 3.67
1809 2397 4.763279 CCACGGGAACTAAGTTATTTGGTT 59.237 41.667 0.00 0.00 42.40 3.67
1810 2398 5.939296 CCACGGGAACTAAGTTATTTGGTTA 59.061 40.000 0.00 0.00 40.15 2.85
1811 2399 6.600427 CCACGGGAACTAAGTTATTTGGTTAT 59.400 38.462 0.00 0.00 40.15 1.89
1812 2400 7.201670 CCACGGGAACTAAGTTATTTGGTTATC 60.202 40.741 0.00 0.00 40.15 1.75
1813 2401 7.551617 CACGGGAACTAAGTTATTTGGTTATCT 59.448 37.037 0.00 0.00 40.15 1.98
1814 2402 8.105197 ACGGGAACTAAGTTATTTGGTTATCTT 58.895 33.333 0.00 0.00 40.15 2.40
1815 2403 9.603921 CGGGAACTAAGTTATTTGGTTATCTTA 57.396 33.333 0.00 0.00 40.15 2.10
1828 2416 7.657023 TTGGTTATCTTAGAGGACTTAGACC 57.343 40.000 0.00 0.00 35.18 3.85
1829 2417 6.982899 TGGTTATCTTAGAGGACTTAGACCT 58.017 40.000 2.37 2.37 40.80 3.85
1830 2418 7.420029 TGGTTATCTTAGAGGACTTAGACCTT 58.580 38.462 4.56 0.00 37.93 3.50
1831 2419 8.563502 TGGTTATCTTAGAGGACTTAGACCTTA 58.436 37.037 4.56 0.00 37.93 2.69
1832 2420 9.070179 GGTTATCTTAGAGGACTTAGACCTTAG 57.930 40.741 4.56 3.94 37.93 2.18
1833 2421 8.570488 GTTATCTTAGAGGACTTAGACCTTAGC 58.430 40.741 4.56 0.00 37.93 3.09
1834 2422 6.075949 TCTTAGAGGACTTAGACCTTAGCA 57.924 41.667 4.56 0.00 37.93 3.49
1835 2423 6.491383 TCTTAGAGGACTTAGACCTTAGCAA 58.509 40.000 4.56 0.00 37.93 3.91
1836 2424 6.377712 TCTTAGAGGACTTAGACCTTAGCAAC 59.622 42.308 4.56 0.00 37.93 4.17
1837 2425 4.417437 AGAGGACTTAGACCTTAGCAACA 58.583 43.478 4.56 0.00 37.93 3.33
1838 2426 4.838986 AGAGGACTTAGACCTTAGCAACAA 59.161 41.667 4.56 0.00 37.93 2.83
1839 2427 4.895961 AGGACTTAGACCTTAGCAACAAC 58.104 43.478 0.00 0.00 33.55 3.32
1840 2428 4.347000 AGGACTTAGACCTTAGCAACAACA 59.653 41.667 0.00 0.00 33.55 3.33
1841 2429 4.451435 GGACTTAGACCTTAGCAACAACAC 59.549 45.833 0.00 0.00 0.00 3.32
1842 2430 5.031066 ACTTAGACCTTAGCAACAACACA 57.969 39.130 0.00 0.00 0.00 3.72
1843 2431 4.814771 ACTTAGACCTTAGCAACAACACAC 59.185 41.667 0.00 0.00 0.00 3.82
1844 2432 3.560636 AGACCTTAGCAACAACACACT 57.439 42.857 0.00 0.00 0.00 3.55
1845 2433 3.467803 AGACCTTAGCAACAACACACTC 58.532 45.455 0.00 0.00 0.00 3.51
1846 2434 3.134804 AGACCTTAGCAACAACACACTCT 59.865 43.478 0.00 0.00 0.00 3.24
1847 2435 3.467803 ACCTTAGCAACAACACACTCTC 58.532 45.455 0.00 0.00 0.00 3.20
1848 2436 3.118408 ACCTTAGCAACAACACACTCTCA 60.118 43.478 0.00 0.00 0.00 3.27
1849 2437 3.496130 CCTTAGCAACAACACACTCTCAG 59.504 47.826 0.00 0.00 0.00 3.35
1850 2438 1.959042 AGCAACAACACACTCTCAGG 58.041 50.000 0.00 0.00 0.00 3.86
1851 2439 1.210478 AGCAACAACACACTCTCAGGT 59.790 47.619 0.00 0.00 0.00 4.00
1852 2440 2.017049 GCAACAACACACTCTCAGGTT 58.983 47.619 0.00 0.00 0.00 3.50
1853 2441 2.032178 GCAACAACACACTCTCAGGTTC 59.968 50.000 0.00 0.00 0.00 3.62
1854 2442 2.614057 CAACAACACACTCTCAGGTTCC 59.386 50.000 0.00 0.00 0.00 3.62
1855 2443 1.837439 ACAACACACTCTCAGGTTCCA 59.163 47.619 0.00 0.00 0.00 3.53
1856 2444 2.439507 ACAACACACTCTCAGGTTCCAT 59.560 45.455 0.00 0.00 0.00 3.41
1857 2445 3.117888 ACAACACACTCTCAGGTTCCATT 60.118 43.478 0.00 0.00 0.00 3.16
1858 2446 3.409026 ACACACTCTCAGGTTCCATTC 57.591 47.619 0.00 0.00 0.00 2.67
1859 2447 2.039084 ACACACTCTCAGGTTCCATTCC 59.961 50.000 0.00 0.00 0.00 3.01
1860 2448 2.038952 CACACTCTCAGGTTCCATTCCA 59.961 50.000 0.00 0.00 0.00 3.53
1861 2449 2.711009 ACACTCTCAGGTTCCATTCCAA 59.289 45.455 0.00 0.00 0.00 3.53
1862 2450 3.244700 ACACTCTCAGGTTCCATTCCAAG 60.245 47.826 0.00 0.00 0.00 3.61
1863 2451 3.008375 CACTCTCAGGTTCCATTCCAAGA 59.992 47.826 0.00 0.00 0.00 3.02
1864 2452 3.652869 ACTCTCAGGTTCCATTCCAAGAA 59.347 43.478 0.00 0.00 0.00 2.52
1865 2453 4.104738 ACTCTCAGGTTCCATTCCAAGAAA 59.895 41.667 0.00 0.00 0.00 2.52
1866 2454 5.222213 ACTCTCAGGTTCCATTCCAAGAAAT 60.222 40.000 0.00 0.00 0.00 2.17
1867 2455 5.644188 TCTCAGGTTCCATTCCAAGAAATT 58.356 37.500 0.00 0.00 0.00 1.82
1868 2456 6.077322 TCTCAGGTTCCATTCCAAGAAATTT 58.923 36.000 0.00 0.00 0.00 1.82
1869 2457 7.237982 TCTCAGGTTCCATTCCAAGAAATTTA 58.762 34.615 0.00 0.00 0.00 1.40
1870 2458 7.394359 TCTCAGGTTCCATTCCAAGAAATTTAG 59.606 37.037 0.00 0.00 0.00 1.85
1871 2459 6.437162 TCAGGTTCCATTCCAAGAAATTTAGG 59.563 38.462 0.00 0.00 0.00 2.69
1872 2460 6.211384 CAGGTTCCATTCCAAGAAATTTAGGT 59.789 38.462 0.00 0.00 0.00 3.08
1873 2461 7.396055 CAGGTTCCATTCCAAGAAATTTAGGTA 59.604 37.037 0.00 0.00 0.00 3.08
1874 2462 7.953493 AGGTTCCATTCCAAGAAATTTAGGTAA 59.047 33.333 0.00 0.00 0.00 2.85
1875 2463 8.758829 GGTTCCATTCCAAGAAATTTAGGTAAT 58.241 33.333 0.00 0.00 0.00 1.89
1890 2478 9.740710 AATTTAGGTAATTTAACTGAGCTCACT 57.259 29.630 13.74 6.85 32.48 3.41
1894 2482 8.312669 AGGTAATTTAACTGAGCTCACTATCT 57.687 34.615 13.74 0.00 0.00 1.98
1895 2483 8.763601 AGGTAATTTAACTGAGCTCACTATCTT 58.236 33.333 13.74 5.23 0.00 2.40
1898 2486 8.635877 AATTTAACTGAGCTCACTATCTTACG 57.364 34.615 13.74 1.98 0.00 3.18
1899 2487 6.754702 TTAACTGAGCTCACTATCTTACGT 57.245 37.500 13.74 2.70 0.00 3.57
1900 2488 5.646577 AACTGAGCTCACTATCTTACGTT 57.353 39.130 13.74 9.28 0.00 3.99
1901 2489 4.987832 ACTGAGCTCACTATCTTACGTTG 58.012 43.478 13.74 0.37 0.00 4.10
1902 2490 4.142359 ACTGAGCTCACTATCTTACGTTGG 60.142 45.833 13.74 0.00 0.00 3.77
1903 2491 3.130516 TGAGCTCACTATCTTACGTTGGG 59.869 47.826 13.74 0.00 0.00 4.12
1904 2492 3.097614 AGCTCACTATCTTACGTTGGGT 58.902 45.455 0.00 0.00 0.00 4.51
1905 2493 3.130693 AGCTCACTATCTTACGTTGGGTC 59.869 47.826 0.00 0.00 0.00 4.46
1906 2494 3.119245 GCTCACTATCTTACGTTGGGTCA 60.119 47.826 0.00 0.00 0.00 4.02
1907 2495 4.619863 GCTCACTATCTTACGTTGGGTCAA 60.620 45.833 0.00 0.00 0.00 3.18
1908 2496 4.813027 TCACTATCTTACGTTGGGTCAAC 58.187 43.478 0.00 1.06 40.54 3.18
1909 2497 4.281435 TCACTATCTTACGTTGGGTCAACA 59.719 41.667 10.75 0.00 43.70 3.33
1910 2498 4.625742 CACTATCTTACGTTGGGTCAACAG 59.374 45.833 10.75 6.40 43.70 3.16
1911 2499 4.525487 ACTATCTTACGTTGGGTCAACAGA 59.475 41.667 10.75 6.66 43.70 3.41
1912 2500 3.102052 TCTTACGTTGGGTCAACAGAC 57.898 47.619 10.75 0.00 43.70 3.51
1913 2501 2.696707 TCTTACGTTGGGTCAACAGACT 59.303 45.455 10.75 0.00 43.70 3.24
1914 2502 2.806608 TACGTTGGGTCAACAGACTC 57.193 50.000 10.75 0.00 43.70 3.36
1915 2503 1.120530 ACGTTGGGTCAACAGACTCT 58.879 50.000 10.75 0.00 43.70 3.24
1916 2504 1.068741 ACGTTGGGTCAACAGACTCTC 59.931 52.381 10.75 0.00 43.70 3.20
1917 2505 1.605712 CGTTGGGTCAACAGACTCTCC 60.606 57.143 10.75 0.00 43.70 3.71
1918 2506 0.679505 TTGGGTCAACAGACTCTCCG 59.320 55.000 0.00 0.00 33.79 4.63
1919 2507 1.185618 TGGGTCAACAGACTCTCCGG 61.186 60.000 0.00 0.00 33.79 5.14
1920 2508 1.079750 GGTCAACAGACTCTCCGGC 60.080 63.158 0.00 0.00 32.81 6.13
1921 2509 1.079750 GTCAACAGACTCTCCGGCC 60.080 63.158 0.00 0.00 0.00 6.13
1922 2510 1.533033 TCAACAGACTCTCCGGCCA 60.533 57.895 2.24 0.00 0.00 5.36
1923 2511 1.118965 TCAACAGACTCTCCGGCCAA 61.119 55.000 2.24 0.00 0.00 4.52
1924 2512 0.250295 CAACAGACTCTCCGGCCAAA 60.250 55.000 2.24 0.00 0.00 3.28
1925 2513 0.693049 AACAGACTCTCCGGCCAAAT 59.307 50.000 2.24 0.00 0.00 2.32
1926 2514 0.693049 ACAGACTCTCCGGCCAAATT 59.307 50.000 2.24 0.00 0.00 1.82
1927 2515 1.339151 ACAGACTCTCCGGCCAAATTC 60.339 52.381 2.24 0.00 0.00 2.17
1928 2516 0.253327 AGACTCTCCGGCCAAATTCC 59.747 55.000 2.24 0.00 0.00 3.01
1929 2517 0.035439 GACTCTCCGGCCAAATTCCA 60.035 55.000 2.24 0.00 0.00 3.53
1930 2518 0.404040 ACTCTCCGGCCAAATTCCAA 59.596 50.000 2.24 0.00 0.00 3.53
1931 2519 1.098050 CTCTCCGGCCAAATTCCAAG 58.902 55.000 2.24 0.00 0.00 3.61
1932 2520 0.695924 TCTCCGGCCAAATTCCAAGA 59.304 50.000 2.24 0.00 0.00 3.02
1933 2521 1.098050 CTCCGGCCAAATTCCAAGAG 58.902 55.000 2.24 0.00 0.00 2.85
1934 2522 0.695924 TCCGGCCAAATTCCAAGAGA 59.304 50.000 2.24 0.00 0.00 3.10
1935 2523 1.074727 TCCGGCCAAATTCCAAGAGAA 59.925 47.619 2.24 0.00 39.32 2.87
1962 2550 9.924650 TTAGGTTATCTTGTGAACTTAGAGAAC 57.075 33.333 11.69 11.69 38.65 3.01
1963 2551 8.196378 AGGTTATCTTGTGAACTTAGAGAACT 57.804 34.615 16.06 0.00 39.10 3.01
1964 2552 8.652290 AGGTTATCTTGTGAACTTAGAGAACTT 58.348 33.333 16.06 10.41 39.10 2.66
1965 2553 8.713271 GGTTATCTTGTGAACTTAGAGAACTTG 58.287 37.037 16.06 0.00 39.10 3.16
1966 2554 8.713271 GTTATCTTGTGAACTTAGAGAACTTGG 58.287 37.037 12.35 0.00 37.23 3.61
1967 2555 6.479972 TCTTGTGAACTTAGAGAACTTGGA 57.520 37.500 0.00 0.00 0.00 3.53
1968 2556 7.067496 TCTTGTGAACTTAGAGAACTTGGAT 57.933 36.000 0.00 0.00 0.00 3.41
1969 2557 7.155328 TCTTGTGAACTTAGAGAACTTGGATC 58.845 38.462 0.00 0.00 0.00 3.36
1970 2558 6.672266 TGTGAACTTAGAGAACTTGGATCT 57.328 37.500 0.00 0.00 0.00 2.75
1971 2559 7.067496 TGTGAACTTAGAGAACTTGGATCTT 57.933 36.000 0.00 0.00 0.00 2.40
1972 2560 8.190326 TGTGAACTTAGAGAACTTGGATCTTA 57.810 34.615 0.00 0.00 0.00 2.10
1973 2561 8.307483 TGTGAACTTAGAGAACTTGGATCTTAG 58.693 37.037 0.00 0.00 0.00 2.18
1974 2562 7.276878 GTGAACTTAGAGAACTTGGATCTTAGC 59.723 40.741 0.00 0.00 0.00 3.09
1975 2563 6.859112 ACTTAGAGAACTTGGATCTTAGCA 57.141 37.500 0.00 0.00 0.00 3.49
1976 2564 7.246171 ACTTAGAGAACTTGGATCTTAGCAA 57.754 36.000 0.00 0.00 0.00 3.91
1977 2565 7.100409 ACTTAGAGAACTTGGATCTTAGCAAC 58.900 38.462 0.00 0.00 0.00 4.17
1982 2570 5.239525 AGAACTTGGATCTTAGCAACAACAC 59.760 40.000 0.00 0.00 0.00 3.32
1983 2571 4.460263 ACTTGGATCTTAGCAACAACACA 58.540 39.130 0.00 0.00 0.00 3.72
1986 2574 4.065088 TGGATCTTAGCAACAACACACTC 58.935 43.478 0.00 0.00 0.00 3.51
1995 2583 1.418334 ACAACACACTCTCAGGCTCT 58.582 50.000 0.00 0.00 0.00 4.09
2003 2591 2.971330 CACTCTCAGGCTCTATCCCAAT 59.029 50.000 0.00 0.00 0.00 3.16
2004 2592 4.155709 CACTCTCAGGCTCTATCCCAATA 58.844 47.826 0.00 0.00 0.00 1.90
2006 2594 5.248020 CACTCTCAGGCTCTATCCCAATAAT 59.752 44.000 0.00 0.00 0.00 1.28
2013 2601 7.348274 TCAGGCTCTATCCCAATAATTATAGGG 59.652 40.741 12.36 10.45 42.86 3.53
2032 2620 4.600062 AGGGAACTTGACAAAACTCACTT 58.400 39.130 0.00 0.00 37.44 3.16
2033 2621 5.751586 AGGGAACTTGACAAAACTCACTTA 58.248 37.500 0.00 0.00 37.44 2.24
2034 2622 6.365520 AGGGAACTTGACAAAACTCACTTAT 58.634 36.000 0.00 0.00 37.44 1.73
2047 2635 8.817100 CAAAACTCACTTATTTGTCCCTTTTTC 58.183 33.333 0.00 0.00 31.17 2.29
2049 2637 7.277174 ACTCACTTATTTGTCCCTTTTTCAG 57.723 36.000 0.00 0.00 0.00 3.02
2053 2785 6.923508 CACTTATTTGTCCCTTTTTCAGAACC 59.076 38.462 0.00 0.00 0.00 3.62
2055 2787 5.948742 ATTTGTCCCTTTTTCAGAACCAA 57.051 34.783 0.00 0.00 0.00 3.67
2080 2812 5.934935 TTCTGGTAAAATTCCACGAGAAC 57.065 39.130 10.73 0.00 35.44 3.01
2091 2823 3.705051 TCCACGAGAACTAGGTTACCAT 58.295 45.455 3.51 0.00 0.00 3.55
2101 2833 7.384477 AGAACTAGGTTACCATGTGAACTTAC 58.616 38.462 3.51 0.00 0.00 2.34
2118 2850 5.346181 ACTTACAGGTCTTGGATCTTAGC 57.654 43.478 0.00 0.00 0.00 3.09
2154 3030 1.457346 GTTCCATCCCAGACAGCTTG 58.543 55.000 0.00 0.00 0.00 4.01
2165 3041 3.512724 CCAGACAGCTTGGGAAATTTGAT 59.487 43.478 0.00 0.00 0.00 2.57
2168 3044 6.327934 CAGACAGCTTGGGAAATTTGATAAG 58.672 40.000 0.00 0.00 0.00 1.73
2175 3051 7.233348 AGCTTGGGAAATTTGATAAGACTCAAA 59.767 33.333 0.00 2.11 46.13 2.69
2540 3992 6.640907 GGCAAGTTAATGAGTTTGGTTAAGTG 59.359 38.462 0.00 0.00 0.00 3.16
3077 4529 6.157994 TCAAATAACCTAACTGGGCAGATACT 59.842 38.462 0.00 0.00 41.11 2.12
3265 4717 3.129287 CCGTATGCTTGAAGCCTTGAATT 59.871 43.478 15.43 0.00 41.51 2.17
3328 4780 4.569943 TCAAAGCATGACAAGTCTCCTAC 58.430 43.478 0.00 0.00 31.50 3.18
3971 5431 5.687166 ACTGCAATTGAATTGGATTGGAT 57.313 34.783 18.52 0.00 39.89 3.41
4406 5867 2.353323 TCTGCAGCAGACATTAGCTTG 58.647 47.619 21.85 0.00 39.50 4.01
4417 5878 7.989741 AGCAGACATTAGCTTGTCAGTTTATAT 59.010 33.333 18.40 0.00 46.81 0.86
4470 5931 7.148069 GGCACTTTAAATAGTTGGAAGCTATGT 60.148 37.037 0.00 0.00 30.38 2.29
4471 5932 7.698130 GCACTTTAAATAGTTGGAAGCTATGTG 59.302 37.037 0.00 0.00 30.38 3.21
4472 5933 8.730680 CACTTTAAATAGTTGGAAGCTATGTGT 58.269 33.333 0.00 0.00 30.38 3.72
4473 5934 9.297037 ACTTTAAATAGTTGGAAGCTATGTGTT 57.703 29.630 0.00 0.00 30.38 3.32
4476 5937 9.906660 TTAAATAGTTGGAAGCTATGTGTTTTG 57.093 29.630 0.00 0.00 30.38 2.44
4477 5938 4.243007 AGTTGGAAGCTATGTGTTTTGC 57.757 40.909 0.00 0.00 0.00 3.68
4478 5939 3.891366 AGTTGGAAGCTATGTGTTTTGCT 59.109 39.130 0.00 0.00 37.37 3.91
4479 5940 4.342092 AGTTGGAAGCTATGTGTTTTGCTT 59.658 37.500 0.00 0.00 46.69 3.91
4480 5941 4.935352 TGGAAGCTATGTGTTTTGCTTT 57.065 36.364 0.00 0.00 44.47 3.51
4481 5942 5.275067 TGGAAGCTATGTGTTTTGCTTTT 57.725 34.783 0.00 0.00 44.47 2.27
4482 5943 5.669477 TGGAAGCTATGTGTTTTGCTTTTT 58.331 33.333 0.00 0.00 44.47 1.94
4637 6098 9.325198 GGTTGTTTTTCATTTTCTACTCCAAAT 57.675 29.630 0.00 0.00 0.00 2.32
4656 6117 7.662897 TCCAAATAAATGCCGAAGTTAAGTTT 58.337 30.769 0.00 0.00 0.00 2.66
4689 6150 9.257865 GTTAATTAAACGTGTATTGCAGTACTG 57.742 33.333 18.93 18.93 0.00 2.74
4718 6179 8.443953 AACTATCAAGATTAACTCTCCAATGC 57.556 34.615 0.00 0.00 31.03 3.56
4857 6318 3.510388 TCTATGGACAAGAGAAGCACG 57.490 47.619 0.00 0.00 0.00 5.34
5273 6738 5.078411 ACAACATTCCACTGAGCTAGTAG 57.922 43.478 0.00 0.00 37.60 2.57
5413 6878 2.742403 CACGTTTACCGGTCCCCA 59.258 61.111 12.40 0.00 42.24 4.96
5491 6957 7.530426 AATTAGCACATTGTTTTCTCTTCCT 57.470 32.000 0.00 0.00 0.00 3.36
5559 7025 9.158233 GTATGGTGCTAGTTTGTTTTCTGTATA 57.842 33.333 0.00 0.00 0.00 1.47
5599 7067 6.106673 ACTGGTACAATGTGTGATTAGTAGC 58.893 40.000 0.00 0.00 38.70 3.58
5756 7224 6.847567 TGTGGTCCTATAAGTATACCCATTGT 59.152 38.462 0.00 0.00 0.00 2.71
5772 7240 3.242903 CCATTGTTCACTTGCGTTACACA 60.243 43.478 0.00 0.00 0.00 3.72
5780 7248 3.723764 CACTTGCGTTACACACAATGTTC 59.276 43.478 0.00 0.00 43.19 3.18
5790 7258 7.360522 CGTTACACACAATGTTCTAAATAGCCA 60.361 37.037 0.00 0.00 43.19 4.75
5797 7265 8.892723 CACAATGTTCTAAATAGCCATCTACAA 58.107 33.333 0.00 0.00 0.00 2.41
5838 7306 0.621609 AGGGTGCCGCTAAAATGGTA 59.378 50.000 0.00 0.00 0.00 3.25
5865 7333 6.208797 TCATGTACAATAGTCCGCTAATAGCT 59.791 38.462 10.80 0.00 39.60 3.32
5951 7419 8.508883 ACCCGCTATTTAAAACATTGTACATA 57.491 30.769 0.00 0.00 0.00 2.29
6000 7468 7.732025 TGAAAGAATCTAAGACAACCAGTACA 58.268 34.615 0.00 0.00 0.00 2.90
6042 7510 8.784043 GTTCGGCTAGTTATCAATAATGGAAAT 58.216 33.333 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.280174 ACAGAGGTTCGACTCAAAAATATTTTA 57.720 29.630 13.68 0.00 39.97 1.52
14 15 8.166422 ACAGAGGTTCGACTCAAAAATATTTT 57.834 30.769 7.64 7.64 39.97 1.82
23 24 5.462530 TCAAATACAGAGGTTCGACTCAA 57.537 39.130 5.90 0.00 39.97 3.02
52 53 6.156775 AGCCAATATTACCCTGCAAAAAGAAT 59.843 34.615 0.00 0.00 0.00 2.40
54 55 5.022787 AGCCAATATTACCCTGCAAAAAGA 58.977 37.500 0.00 0.00 0.00 2.52
93 94 9.398538 AGGTTTTGCGTATACTTCCATTATAAA 57.601 29.630 0.56 0.00 0.00 1.40
94 95 8.832521 CAGGTTTTGCGTATACTTCCATTATAA 58.167 33.333 0.56 0.00 0.00 0.98
102 103 3.340928 ACCCAGGTTTTGCGTATACTTC 58.659 45.455 0.56 0.00 0.00 3.01
118 119 1.740296 CCTGCGTACCGAAACCCAG 60.740 63.158 0.00 0.00 0.00 4.45
119 120 2.344500 CCTGCGTACCGAAACCCA 59.656 61.111 0.00 0.00 0.00 4.51
127 128 1.696063 TATACTCCCACCTGCGTACC 58.304 55.000 0.00 0.00 0.00 3.34
131 132 5.916661 ACTTATATATACTCCCACCTGCG 57.083 43.478 0.00 0.00 0.00 5.18
132 133 5.875359 GCAACTTATATATACTCCCACCTGC 59.125 44.000 0.00 0.00 0.00 4.85
134 135 7.450903 GTTGCAACTTATATATACTCCCACCT 58.549 38.462 22.36 0.00 0.00 4.00
151 152 0.324943 ACCATCCTAGCGTTGCAACT 59.675 50.000 26.09 12.00 0.00 3.16
164 165 9.561069 GAATGGTCCAATATATATGTACCATCC 57.439 37.037 23.82 15.43 43.58 3.51
175 176 6.485171 GGGTAGCTTGAATGGTCCAATATAT 58.515 40.000 0.00 0.00 0.00 0.86
177 178 4.447762 GGGGTAGCTTGAATGGTCCAATAT 60.448 45.833 0.00 0.00 0.00 1.28
182 183 0.623723 TGGGGTAGCTTGAATGGTCC 59.376 55.000 0.00 0.00 0.00 4.46
184 185 2.683742 CGATTGGGGTAGCTTGAATGGT 60.684 50.000 0.00 0.00 0.00 3.55
216 217 5.764192 TGTCATCATCACACACAATTTCTCA 59.236 36.000 0.00 0.00 0.00 3.27
249 257 6.018016 CAGGAACATTGTTCATTTTTCCAACC 60.018 38.462 26.27 9.05 35.87 3.77
250 258 6.760770 TCAGGAACATTGTTCATTTTTCCAAC 59.239 34.615 26.27 8.83 35.87 3.77
260 268 5.976534 CGTTGAAATTCAGGAACATTGTTCA 59.023 36.000 26.27 10.14 0.00 3.18
261 269 5.977129 ACGTTGAAATTCAGGAACATTGTTC 59.023 36.000 19.17 19.17 0.00 3.18
270 278 2.032799 GCACACACGTTGAAATTCAGGA 59.967 45.455 0.00 0.00 0.00 3.86
276 284 1.601903 ACATCGCACACACGTTGAAAT 59.398 42.857 5.01 0.00 36.50 2.17
284 292 3.542712 ATTCTTCAACATCGCACACAC 57.457 42.857 0.00 0.00 0.00 3.82
318 326 5.147330 ACATCTCACAAGGTTGTTCGATA 57.853 39.130 0.00 0.00 39.91 2.92
324 332 4.397420 TGCATAACATCTCACAAGGTTGT 58.603 39.130 0.00 0.00 43.36 3.32
330 338 4.765273 ACCGTATGCATAACATCTCACAA 58.235 39.130 8.28 0.00 40.38 3.33
361 369 1.289109 CCTCATCGCAAACGGTTCGT 61.289 55.000 0.00 0.00 43.97 3.85
370 378 1.271871 ACAATTGACCCCTCATCGCAA 60.272 47.619 13.59 0.00 0.00 4.85
384 392 2.161609 GTCAGCGGGGAAAGTACAATTG 59.838 50.000 3.24 3.24 0.00 2.32
413 421 2.044551 CAGGGAAGGCAAGGAGGC 60.045 66.667 0.00 0.00 44.61 4.70
455 463 0.693430 TGCAGGATGAGGCAGGAGAT 60.693 55.000 0.00 0.00 39.69 2.75
464 472 1.735386 CAGGTGAAGTGCAGGATGAG 58.265 55.000 0.00 0.00 39.69 2.90
465 473 0.321919 GCAGGTGAAGTGCAGGATGA 60.322 55.000 0.00 0.00 39.69 2.92
470 478 0.533531 TGTCAGCAGGTGAAGTGCAG 60.534 55.000 3.22 0.00 43.82 4.41
498 506 1.153745 CACGGAGAAAGGCGAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
499 507 2.970639 CACGGAGAAAGGCGAGGA 59.029 61.111 0.00 0.00 0.00 3.71
500 508 2.815647 GCACGGAGAAAGGCGAGG 60.816 66.667 0.00 0.00 0.00 4.63
501 509 2.048222 TGCACGGAGAAAGGCGAG 60.048 61.111 0.00 0.00 0.00 5.03
502 510 2.357034 GTGCACGGAGAAAGGCGA 60.357 61.111 0.00 0.00 0.00 5.54
524 532 2.324215 CCAGCACATGGGATAAGCG 58.676 57.895 0.00 0.00 46.36 4.68
543 551 2.816958 CATCGGCACAGCTTCGCT 60.817 61.111 4.23 0.00 40.77 4.93
546 554 3.869272 CGGCATCGGCACAGCTTC 61.869 66.667 0.00 0.00 43.71 3.86
557 565 2.464459 CGTCCAAGGAAGCGGCATC 61.464 63.158 1.45 0.00 0.00 3.91
586 594 2.124151 GCCGCCATTGTCCTCCAT 60.124 61.111 0.00 0.00 0.00 3.41
587 595 4.424711 GGCCGCCATTGTCCTCCA 62.425 66.667 3.91 0.00 0.00 3.86
590 598 2.053865 CATTGGCCGCCATTGTCCT 61.054 57.895 21.36 0.00 32.27 3.85
591 599 2.495866 CATTGGCCGCCATTGTCC 59.504 61.111 21.36 0.00 32.27 4.02
592 600 2.008268 CTCCATTGGCCGCCATTGTC 62.008 60.000 25.44 0.00 34.28 3.18
593 601 2.037049 TCCATTGGCCGCCATTGT 59.963 55.556 25.44 9.45 34.28 2.71
594 602 2.788640 CCTCCATTGGCCGCCATTG 61.789 63.158 22.30 22.30 35.42 2.82
595 603 2.442643 CCTCCATTGGCCGCCATT 60.443 61.111 14.30 7.00 31.53 3.16
596 604 3.419580 TCCTCCATTGGCCGCCAT 61.420 61.111 14.30 0.34 31.53 4.40
597 605 4.424711 GTCCTCCATTGGCCGCCA 62.425 66.667 8.43 8.43 0.00 5.69
598 606 4.115199 AGTCCTCCATTGGCCGCC 62.115 66.667 1.04 1.04 0.00 6.13
599 607 2.514824 GAGTCCTCCATTGGCCGC 60.515 66.667 0.00 0.00 0.00 6.53
618 961 0.110373 GTGGGCATCGTCGTCAAAAC 60.110 55.000 0.00 0.00 0.00 2.43
619 962 0.533085 TGTGGGCATCGTCGTCAAAA 60.533 50.000 0.00 0.00 0.00 2.44
626 969 2.509336 CTCCGTGTGGGCATCGTC 60.509 66.667 0.00 0.00 35.24 4.20
639 982 1.442184 CTCGAACACGTGTCCTCCG 60.442 63.158 23.61 21.05 0.00 4.63
753 1096 1.600916 GGTCTTGACACCACAGCCC 60.601 63.158 3.08 0.00 36.32 5.19
1353 1721 1.622499 CCCAATGCCAGGAGGGAAT 59.378 57.895 0.00 0.00 44.30 3.01
1412 1780 3.108376 AGGTGAACTGACCCTCTTATCC 58.892 50.000 0.00 0.00 36.56 2.59
1689 2277 4.082845 TGGAACCTGAAAGTGTGTTTTCA 58.917 39.130 1.76 1.76 42.93 2.69
1690 2278 4.712122 TGGAACCTGAAAGTGTGTTTTC 57.288 40.909 0.00 0.00 37.53 2.29
1691 2279 4.099419 GGATGGAACCTGAAAGTGTGTTTT 59.901 41.667 0.00 0.00 0.00 2.43
1692 2280 3.636764 GGATGGAACCTGAAAGTGTGTTT 59.363 43.478 0.00 0.00 0.00 2.83
1693 2281 3.222603 GGATGGAACCTGAAAGTGTGTT 58.777 45.455 0.00 0.00 0.00 3.32
1694 2282 2.489073 GGGATGGAACCTGAAAGTGTGT 60.489 50.000 0.00 0.00 0.00 3.72
1695 2283 2.162681 GGGATGGAACCTGAAAGTGTG 58.837 52.381 0.00 0.00 0.00 3.82
1696 2284 1.780309 TGGGATGGAACCTGAAAGTGT 59.220 47.619 0.00 0.00 0.00 3.55
1697 2285 2.584835 TGGGATGGAACCTGAAAGTG 57.415 50.000 0.00 0.00 0.00 3.16
1698 2286 3.230976 GTTTGGGATGGAACCTGAAAGT 58.769 45.455 0.00 0.00 0.00 2.66
1699 2287 3.230134 TGTTTGGGATGGAACCTGAAAG 58.770 45.455 0.00 0.00 0.00 2.62
1700 2288 3.230134 CTGTTTGGGATGGAACCTGAAA 58.770 45.455 0.00 0.00 0.00 2.69
1701 2289 2.875296 CTGTTTGGGATGGAACCTGAA 58.125 47.619 0.00 0.00 0.00 3.02
1702 2290 1.547675 GCTGTTTGGGATGGAACCTGA 60.548 52.381 0.00 0.00 0.00 3.86
1703 2291 0.890683 GCTGTTTGGGATGGAACCTG 59.109 55.000 0.00 0.00 0.00 4.00
1704 2292 0.779997 AGCTGTTTGGGATGGAACCT 59.220 50.000 0.00 0.00 0.00 3.50
1705 2293 1.632589 AAGCTGTTTGGGATGGAACC 58.367 50.000 0.00 0.00 0.00 3.62
1706 2294 2.755103 CCTAAGCTGTTTGGGATGGAAC 59.245 50.000 0.19 0.00 39.69 3.62
1707 2295 2.647299 TCCTAAGCTGTTTGGGATGGAA 59.353 45.455 5.25 0.00 41.09 3.53
1708 2296 2.274542 TCCTAAGCTGTTTGGGATGGA 58.725 47.619 5.25 0.00 41.09 3.41
1709 2297 2.806945 TCCTAAGCTGTTTGGGATGG 57.193 50.000 5.25 0.00 41.09 3.51
1710 2298 5.665916 AATTTCCTAAGCTGTTTGGGATG 57.334 39.130 9.96 0.00 44.83 3.51
1711 2299 5.779771 TCAAATTTCCTAAGCTGTTTGGGAT 59.220 36.000 9.96 0.00 44.83 3.85
1712 2300 5.010617 GTCAAATTTCCTAAGCTGTTTGGGA 59.989 40.000 5.25 5.25 43.93 4.37
1713 2301 5.221422 TGTCAAATTTCCTAAGCTGTTTGGG 60.221 40.000 0.07 0.07 38.71 4.12
1714 2302 5.841810 TGTCAAATTTCCTAAGCTGTTTGG 58.158 37.500 0.00 0.00 0.00 3.28
1715 2303 7.769272 TTTGTCAAATTTCCTAAGCTGTTTG 57.231 32.000 0.00 0.00 0.00 2.93
1716 2304 8.040727 AGTTTTGTCAAATTTCCTAAGCTGTTT 58.959 29.630 0.00 0.00 0.00 2.83
1717 2305 7.555965 AGTTTTGTCAAATTTCCTAAGCTGTT 58.444 30.769 0.00 0.00 0.00 3.16
1718 2306 7.112452 AGTTTTGTCAAATTTCCTAAGCTGT 57.888 32.000 0.00 0.00 0.00 4.40
1719 2307 7.168135 GTGAGTTTTGTCAAATTTCCTAAGCTG 59.832 37.037 0.00 0.00 0.00 4.24
1720 2308 7.203218 GTGAGTTTTGTCAAATTTCCTAAGCT 58.797 34.615 0.00 0.00 0.00 3.74
1721 2309 6.420903 GGTGAGTTTTGTCAAATTTCCTAAGC 59.579 38.462 0.00 0.00 0.00 3.09
1722 2310 7.435192 GTGGTGAGTTTTGTCAAATTTCCTAAG 59.565 37.037 0.00 0.00 0.00 2.18
1723 2311 7.262048 GTGGTGAGTTTTGTCAAATTTCCTAA 58.738 34.615 0.00 0.00 0.00 2.69
1724 2312 6.183360 GGTGGTGAGTTTTGTCAAATTTCCTA 60.183 38.462 0.00 0.00 0.00 2.94
1725 2313 5.395214 GGTGGTGAGTTTTGTCAAATTTCCT 60.395 40.000 0.00 0.00 0.00 3.36
1726 2314 4.808895 GGTGGTGAGTTTTGTCAAATTTCC 59.191 41.667 0.00 0.00 0.00 3.13
1727 2315 5.660460 AGGTGGTGAGTTTTGTCAAATTTC 58.340 37.500 0.00 1.30 0.00 2.17
1728 2316 5.675684 AGGTGGTGAGTTTTGTCAAATTT 57.324 34.783 0.00 0.00 0.00 1.82
1729 2317 5.418676 CAAGGTGGTGAGTTTTGTCAAATT 58.581 37.500 0.00 0.00 0.00 1.82
1730 2318 4.680440 GCAAGGTGGTGAGTTTTGTCAAAT 60.680 41.667 0.00 0.00 0.00 2.32
1731 2319 3.367910 GCAAGGTGGTGAGTTTTGTCAAA 60.368 43.478 0.00 0.00 0.00 2.69
1732 2320 2.165437 GCAAGGTGGTGAGTTTTGTCAA 59.835 45.455 0.00 0.00 0.00 3.18
1733 2321 1.748493 GCAAGGTGGTGAGTTTTGTCA 59.252 47.619 0.00 0.00 0.00 3.58
1734 2322 1.748493 TGCAAGGTGGTGAGTTTTGTC 59.252 47.619 0.00 0.00 0.00 3.18
1735 2323 1.846007 TGCAAGGTGGTGAGTTTTGT 58.154 45.000 0.00 0.00 0.00 2.83
1736 2324 2.624838 AGATGCAAGGTGGTGAGTTTTG 59.375 45.455 0.00 0.00 0.00 2.44
1737 2325 2.949447 AGATGCAAGGTGGTGAGTTTT 58.051 42.857 0.00 0.00 0.00 2.43
1738 2326 2.664402 AGATGCAAGGTGGTGAGTTT 57.336 45.000 0.00 0.00 0.00 2.66
1739 2327 2.664402 AAGATGCAAGGTGGTGAGTT 57.336 45.000 0.00 0.00 0.00 3.01
1740 2328 2.664402 AAAGATGCAAGGTGGTGAGT 57.336 45.000 0.00 0.00 0.00 3.41
1741 2329 3.318839 TCAAAAAGATGCAAGGTGGTGAG 59.681 43.478 0.00 0.00 0.00 3.51
1742 2330 3.295093 TCAAAAAGATGCAAGGTGGTGA 58.705 40.909 0.00 0.00 0.00 4.02
1743 2331 3.318839 TCTCAAAAAGATGCAAGGTGGTG 59.681 43.478 0.00 0.00 0.00 4.17
1744 2332 3.565307 TCTCAAAAAGATGCAAGGTGGT 58.435 40.909 0.00 0.00 0.00 4.16
1745 2333 4.301628 GTTCTCAAAAAGATGCAAGGTGG 58.698 43.478 0.00 0.00 32.82 4.61
1746 2334 4.038402 AGGTTCTCAAAAAGATGCAAGGTG 59.962 41.667 0.00 0.00 32.82 4.00
1747 2335 4.038402 CAGGTTCTCAAAAAGATGCAAGGT 59.962 41.667 0.00 0.00 32.82 3.50
1748 2336 4.553323 CAGGTTCTCAAAAAGATGCAAGG 58.447 43.478 0.00 0.00 32.82 3.61
1749 2337 3.985925 GCAGGTTCTCAAAAAGATGCAAG 59.014 43.478 0.00 0.00 37.44 4.01
1750 2338 3.638160 AGCAGGTTCTCAAAAAGATGCAA 59.362 39.130 0.00 0.00 39.14 4.08
1751 2339 3.225104 AGCAGGTTCTCAAAAAGATGCA 58.775 40.909 0.00 0.00 39.14 3.96
1752 2340 3.930634 AGCAGGTTCTCAAAAAGATGC 57.069 42.857 0.00 0.00 37.66 3.91
1753 2341 6.810182 CCATAAAGCAGGTTCTCAAAAAGATG 59.190 38.462 0.00 0.00 32.82 2.90
1754 2342 6.071165 CCCATAAAGCAGGTTCTCAAAAAGAT 60.071 38.462 0.00 0.00 32.82 2.40
1755 2343 5.243730 CCCATAAAGCAGGTTCTCAAAAAGA 59.756 40.000 0.00 0.00 0.00 2.52
1756 2344 5.473039 CCCATAAAGCAGGTTCTCAAAAAG 58.527 41.667 0.00 0.00 0.00 2.27
1757 2345 4.262420 GCCCATAAAGCAGGTTCTCAAAAA 60.262 41.667 0.00 0.00 0.00 1.94
1758 2346 3.258123 GCCCATAAAGCAGGTTCTCAAAA 59.742 43.478 0.00 0.00 0.00 2.44
1759 2347 2.825532 GCCCATAAAGCAGGTTCTCAAA 59.174 45.455 0.00 0.00 0.00 2.69
1760 2348 2.224992 TGCCCATAAAGCAGGTTCTCAA 60.225 45.455 0.00 0.00 34.69 3.02
1761 2349 1.354031 TGCCCATAAAGCAGGTTCTCA 59.646 47.619 0.00 0.00 34.69 3.27
1762 2350 2.128771 TGCCCATAAAGCAGGTTCTC 57.871 50.000 0.00 0.00 34.69 2.87
1763 2351 2.603075 TTGCCCATAAAGCAGGTTCT 57.397 45.000 0.00 0.00 42.17 3.01
1764 2352 3.893326 ATTTGCCCATAAAGCAGGTTC 57.107 42.857 0.00 0.00 42.17 3.62
1765 2353 3.055167 GGAATTTGCCCATAAAGCAGGTT 60.055 43.478 0.00 0.00 42.17 3.50
1766 2354 2.501316 GGAATTTGCCCATAAAGCAGGT 59.499 45.455 0.00 0.00 42.17 4.00
1767 2355 2.500910 TGGAATTTGCCCATAAAGCAGG 59.499 45.455 0.00 0.00 42.17 4.85
1768 2356 3.524541 GTGGAATTTGCCCATAAAGCAG 58.475 45.455 0.00 0.00 42.17 4.24
1769 2357 2.094286 CGTGGAATTTGCCCATAAAGCA 60.094 45.455 0.00 0.00 38.81 3.91
1770 2358 2.539476 CGTGGAATTTGCCCATAAAGC 58.461 47.619 0.00 0.00 35.91 3.51
1771 2359 2.159114 CCCGTGGAATTTGCCCATAAAG 60.159 50.000 0.00 0.00 35.91 1.85
1772 2360 1.827969 CCCGTGGAATTTGCCCATAAA 59.172 47.619 0.00 0.00 35.91 1.40
1773 2361 1.006043 TCCCGTGGAATTTGCCCATAA 59.994 47.619 0.00 0.00 35.91 1.90
1774 2362 0.626382 TCCCGTGGAATTTGCCCATA 59.374 50.000 0.00 0.00 35.91 2.74
1775 2363 0.252012 TTCCCGTGGAATTTGCCCAT 60.252 50.000 1.68 0.00 36.71 4.00
1776 2364 1.153989 TTCCCGTGGAATTTGCCCA 59.846 52.632 1.68 0.00 36.71 5.36
1777 2365 0.898326 AGTTCCCGTGGAATTTGCCC 60.898 55.000 8.36 0.00 44.04 5.36
1778 2366 1.828979 TAGTTCCCGTGGAATTTGCC 58.171 50.000 8.36 0.00 44.04 4.52
1779 2367 2.817844 ACTTAGTTCCCGTGGAATTTGC 59.182 45.455 8.36 0.00 44.04 3.68
1780 2368 6.753107 ATAACTTAGTTCCCGTGGAATTTG 57.247 37.500 0.00 4.76 44.04 2.32
1781 2369 7.309560 CCAAATAACTTAGTTCCCGTGGAATTT 60.310 37.037 0.00 0.00 44.04 1.82
1782 2370 6.152154 CCAAATAACTTAGTTCCCGTGGAATT 59.848 38.462 0.00 7.15 44.04 2.17
1783 2371 5.650703 CCAAATAACTTAGTTCCCGTGGAAT 59.349 40.000 0.00 2.27 44.04 3.01
1784 2372 5.005094 CCAAATAACTTAGTTCCCGTGGAA 58.995 41.667 0.00 1.68 39.66 3.53
1785 2373 4.041938 ACCAAATAACTTAGTTCCCGTGGA 59.958 41.667 17.88 0.00 0.00 4.02
1786 2374 4.329392 ACCAAATAACTTAGTTCCCGTGG 58.671 43.478 0.00 8.00 0.00 4.94
1787 2375 5.952526 AACCAAATAACTTAGTTCCCGTG 57.047 39.130 0.00 0.00 0.00 4.94
1788 2376 7.627311 AGATAACCAAATAACTTAGTTCCCGT 58.373 34.615 0.00 0.00 0.00 5.28
1789 2377 8.502105 AAGATAACCAAATAACTTAGTTCCCG 57.498 34.615 0.00 0.00 0.00 5.14
1802 2390 8.706521 GGTCTAAGTCCTCTAAGATAACCAAAT 58.293 37.037 0.00 0.00 0.00 2.32
1803 2391 7.899709 AGGTCTAAGTCCTCTAAGATAACCAAA 59.100 37.037 0.00 0.00 0.00 3.28
1804 2392 7.420029 AGGTCTAAGTCCTCTAAGATAACCAA 58.580 38.462 0.00 0.00 0.00 3.67
1805 2393 6.982899 AGGTCTAAGTCCTCTAAGATAACCA 58.017 40.000 0.00 0.00 0.00 3.67
1806 2394 7.901283 AAGGTCTAAGTCCTCTAAGATAACC 57.099 40.000 0.00 0.00 33.76 2.85
1807 2395 8.570488 GCTAAGGTCTAAGTCCTCTAAGATAAC 58.430 40.741 0.00 0.00 33.76 1.89
1808 2396 8.280084 TGCTAAGGTCTAAGTCCTCTAAGATAA 58.720 37.037 0.00 0.00 33.76 1.75
1809 2397 7.813331 TGCTAAGGTCTAAGTCCTCTAAGATA 58.187 38.462 0.00 0.00 33.76 1.98
1810 2398 6.674573 TGCTAAGGTCTAAGTCCTCTAAGAT 58.325 40.000 0.00 0.00 33.76 2.40
1811 2399 6.075949 TGCTAAGGTCTAAGTCCTCTAAGA 57.924 41.667 0.00 0.00 33.76 2.10
1812 2400 6.153000 TGTTGCTAAGGTCTAAGTCCTCTAAG 59.847 42.308 0.00 0.00 33.76 2.18
1813 2401 6.014647 TGTTGCTAAGGTCTAAGTCCTCTAA 58.985 40.000 0.00 0.00 33.76 2.10
1814 2402 5.577100 TGTTGCTAAGGTCTAAGTCCTCTA 58.423 41.667 0.00 0.00 33.76 2.43
1815 2403 4.417437 TGTTGCTAAGGTCTAAGTCCTCT 58.583 43.478 0.00 0.00 33.76 3.69
1816 2404 4.803098 TGTTGCTAAGGTCTAAGTCCTC 57.197 45.455 0.00 0.00 33.76 3.71
1817 2405 4.347000 TGTTGTTGCTAAGGTCTAAGTCCT 59.653 41.667 0.00 0.00 36.81 3.85
1818 2406 4.451435 GTGTTGTTGCTAAGGTCTAAGTCC 59.549 45.833 0.00 0.00 0.00 3.85
1819 2407 5.050295 GTGTGTTGTTGCTAAGGTCTAAGTC 60.050 44.000 0.00 0.00 0.00 3.01
1820 2408 4.814771 GTGTGTTGTTGCTAAGGTCTAAGT 59.185 41.667 0.00 0.00 0.00 2.24
1821 2409 5.057149 AGTGTGTTGTTGCTAAGGTCTAAG 58.943 41.667 0.00 0.00 0.00 2.18
1822 2410 5.031066 AGTGTGTTGTTGCTAAGGTCTAA 57.969 39.130 0.00 0.00 0.00 2.10
1823 2411 4.344102 AGAGTGTGTTGTTGCTAAGGTCTA 59.656 41.667 0.00 0.00 0.00 2.59
1824 2412 3.134804 AGAGTGTGTTGTTGCTAAGGTCT 59.865 43.478 0.00 0.00 0.00 3.85
1825 2413 3.467803 AGAGTGTGTTGTTGCTAAGGTC 58.532 45.455 0.00 0.00 0.00 3.85
1826 2414 3.118408 TGAGAGTGTGTTGTTGCTAAGGT 60.118 43.478 0.00 0.00 0.00 3.50
1827 2415 3.466836 TGAGAGTGTGTTGTTGCTAAGG 58.533 45.455 0.00 0.00 0.00 2.69
1828 2416 3.496130 CCTGAGAGTGTGTTGTTGCTAAG 59.504 47.826 0.00 0.00 0.00 2.18
1829 2417 3.118408 ACCTGAGAGTGTGTTGTTGCTAA 60.118 43.478 0.00 0.00 0.00 3.09
1830 2418 2.434336 ACCTGAGAGTGTGTTGTTGCTA 59.566 45.455 0.00 0.00 0.00 3.49
1831 2419 1.210478 ACCTGAGAGTGTGTTGTTGCT 59.790 47.619 0.00 0.00 0.00 3.91
1832 2420 1.668419 ACCTGAGAGTGTGTTGTTGC 58.332 50.000 0.00 0.00 0.00 4.17
1833 2421 2.614057 GGAACCTGAGAGTGTGTTGTTG 59.386 50.000 0.00 0.00 0.00 3.33
1834 2422 2.238646 TGGAACCTGAGAGTGTGTTGTT 59.761 45.455 0.00 0.00 0.00 2.83
1835 2423 1.837439 TGGAACCTGAGAGTGTGTTGT 59.163 47.619 0.00 0.00 0.00 3.32
1836 2424 2.620251 TGGAACCTGAGAGTGTGTTG 57.380 50.000 0.00 0.00 0.00 3.33
1837 2425 3.496870 GGAATGGAACCTGAGAGTGTGTT 60.497 47.826 0.00 0.00 0.00 3.32
1838 2426 2.039084 GGAATGGAACCTGAGAGTGTGT 59.961 50.000 0.00 0.00 0.00 3.72
1839 2427 2.038952 TGGAATGGAACCTGAGAGTGTG 59.961 50.000 0.00 0.00 0.00 3.82
1840 2428 2.338809 TGGAATGGAACCTGAGAGTGT 58.661 47.619 0.00 0.00 0.00 3.55
1841 2429 3.008375 TCTTGGAATGGAACCTGAGAGTG 59.992 47.826 0.00 0.00 0.00 3.51
1842 2430 3.251484 TCTTGGAATGGAACCTGAGAGT 58.749 45.455 0.00 0.00 0.00 3.24
1843 2431 3.988976 TCTTGGAATGGAACCTGAGAG 57.011 47.619 0.00 0.00 0.00 3.20
1844 2432 4.722526 TTTCTTGGAATGGAACCTGAGA 57.277 40.909 0.00 0.00 0.00 3.27
1845 2433 5.990120 AATTTCTTGGAATGGAACCTGAG 57.010 39.130 0.00 0.00 0.00 3.35
1846 2434 6.437162 CCTAAATTTCTTGGAATGGAACCTGA 59.563 38.462 0.00 0.00 0.00 3.86
1847 2435 6.211384 ACCTAAATTTCTTGGAATGGAACCTG 59.789 38.462 10.53 0.00 0.00 4.00
1848 2436 6.322931 ACCTAAATTTCTTGGAATGGAACCT 58.677 36.000 10.53 0.00 0.00 3.50
1849 2437 6.605471 ACCTAAATTTCTTGGAATGGAACC 57.395 37.500 10.53 0.00 0.00 3.62
1864 2452 9.740710 AGTGAGCTCAGTTAAATTACCTAAATT 57.259 29.630 18.89 0.00 39.56 1.82
1868 2456 9.422681 AGATAGTGAGCTCAGTTAAATTACCTA 57.577 33.333 28.32 15.97 0.00 3.08
1869 2457 8.312669 AGATAGTGAGCTCAGTTAAATTACCT 57.687 34.615 28.32 14.35 0.00 3.08
1870 2458 8.950208 AAGATAGTGAGCTCAGTTAAATTACC 57.050 34.615 28.32 7.43 0.00 2.85
1872 2460 9.731819 CGTAAGATAGTGAGCTCAGTTAAATTA 57.268 33.333 28.32 17.98 43.02 1.40
1873 2461 8.251721 ACGTAAGATAGTGAGCTCAGTTAAATT 58.748 33.333 28.32 18.85 43.62 1.82
1874 2462 7.773149 ACGTAAGATAGTGAGCTCAGTTAAAT 58.227 34.615 28.32 16.31 43.62 1.40
1875 2463 7.154435 ACGTAAGATAGTGAGCTCAGTTAAA 57.846 36.000 28.32 12.02 43.62 1.52
1876 2464 6.754702 ACGTAAGATAGTGAGCTCAGTTAA 57.245 37.500 28.32 12.78 43.62 2.01
1877 2465 6.404403 CCAACGTAAGATAGTGAGCTCAGTTA 60.404 42.308 28.32 18.17 43.62 2.24
1878 2466 5.403246 CAACGTAAGATAGTGAGCTCAGTT 58.597 41.667 28.32 16.42 43.62 3.16
1879 2467 4.142359 CCAACGTAAGATAGTGAGCTCAGT 60.142 45.833 26.57 26.57 43.62 3.41
1880 2468 4.355437 CCAACGTAAGATAGTGAGCTCAG 58.645 47.826 18.89 4.33 43.62 3.35
1881 2469 3.130516 CCCAACGTAAGATAGTGAGCTCA 59.869 47.826 13.74 13.74 43.62 4.26
1882 2470 3.130693 ACCCAACGTAAGATAGTGAGCTC 59.869 47.826 6.82 6.82 43.62 4.09
1883 2471 3.097614 ACCCAACGTAAGATAGTGAGCT 58.902 45.455 0.00 0.00 43.62 4.09
1884 2472 3.119245 TGACCCAACGTAAGATAGTGAGC 60.119 47.826 0.00 0.00 43.62 4.26
1885 2473 4.713824 TGACCCAACGTAAGATAGTGAG 57.286 45.455 0.00 0.00 43.62 3.51
1886 2474 4.281435 TGTTGACCCAACGTAAGATAGTGA 59.719 41.667 5.51 0.00 46.13 3.41
1887 2475 4.562082 TGTTGACCCAACGTAAGATAGTG 58.438 43.478 5.51 0.00 46.13 2.74
1888 2476 4.525487 TCTGTTGACCCAACGTAAGATAGT 59.475 41.667 5.51 0.00 46.13 2.12
1889 2477 4.863131 GTCTGTTGACCCAACGTAAGATAG 59.137 45.833 5.51 0.00 46.13 2.08
1890 2478 4.525487 AGTCTGTTGACCCAACGTAAGATA 59.475 41.667 5.51 0.00 46.13 1.98
1891 2479 3.323979 AGTCTGTTGACCCAACGTAAGAT 59.676 43.478 5.51 0.00 46.13 2.40
1892 2480 2.696707 AGTCTGTTGACCCAACGTAAGA 59.303 45.455 5.51 1.04 46.13 2.10
1893 2481 3.057734 GAGTCTGTTGACCCAACGTAAG 58.942 50.000 5.51 0.00 46.13 2.34
1894 2482 2.696707 AGAGTCTGTTGACCCAACGTAA 59.303 45.455 0.00 0.00 46.13 3.18
1895 2483 2.295349 GAGAGTCTGTTGACCCAACGTA 59.705 50.000 0.00 0.00 46.13 3.57
1896 2484 1.068741 GAGAGTCTGTTGACCCAACGT 59.931 52.381 0.00 0.00 46.13 3.99
1897 2485 1.605712 GGAGAGTCTGTTGACCCAACG 60.606 57.143 0.00 1.65 46.13 4.10
1898 2486 1.605712 CGGAGAGTCTGTTGACCCAAC 60.606 57.143 0.00 3.10 43.91 3.77
1899 2487 0.679505 CGGAGAGTCTGTTGACCCAA 59.320 55.000 0.00 0.00 43.91 4.12
1900 2488 1.185618 CCGGAGAGTCTGTTGACCCA 61.186 60.000 0.00 0.00 43.91 4.51
1901 2489 1.592223 CCGGAGAGTCTGTTGACCC 59.408 63.158 0.00 0.00 43.91 4.46
1902 2490 1.079750 GCCGGAGAGTCTGTTGACC 60.080 63.158 5.05 0.00 43.91 4.02
1903 2491 1.079750 GGCCGGAGAGTCTGTTGAC 60.080 63.158 5.05 0.00 43.22 3.18
1904 2492 1.118965 TTGGCCGGAGAGTCTGTTGA 61.119 55.000 5.05 0.00 0.00 3.18
1905 2493 0.250295 TTTGGCCGGAGAGTCTGTTG 60.250 55.000 5.05 0.00 0.00 3.33
1906 2494 0.693049 ATTTGGCCGGAGAGTCTGTT 59.307 50.000 5.05 0.00 0.00 3.16
1907 2495 0.693049 AATTTGGCCGGAGAGTCTGT 59.307 50.000 5.05 0.00 0.00 3.41
1908 2496 1.373570 GAATTTGGCCGGAGAGTCTG 58.626 55.000 5.05 0.00 0.00 3.51
1909 2497 0.253327 GGAATTTGGCCGGAGAGTCT 59.747 55.000 5.05 0.00 0.00 3.24
1910 2498 0.035439 TGGAATTTGGCCGGAGAGTC 60.035 55.000 5.05 0.00 0.00 3.36
1911 2499 0.404040 TTGGAATTTGGCCGGAGAGT 59.596 50.000 5.05 0.00 0.00 3.24
1912 2500 1.098050 CTTGGAATTTGGCCGGAGAG 58.902 55.000 5.05 0.00 0.00 3.20
1913 2501 0.695924 TCTTGGAATTTGGCCGGAGA 59.304 50.000 5.05 0.00 0.00 3.71
1914 2502 1.098050 CTCTTGGAATTTGGCCGGAG 58.902 55.000 5.05 0.00 0.00 4.63
1915 2503 0.695924 TCTCTTGGAATTTGGCCGGA 59.304 50.000 5.05 0.00 0.00 5.14
1916 2504 1.544724 TTCTCTTGGAATTTGGCCGG 58.455 50.000 0.00 0.00 0.00 6.13
1936 2524 9.924650 GTTCTCTAAGTTCACAAGATAACCTAA 57.075 33.333 0.00 0.00 0.00 2.69
1937 2525 9.310449 AGTTCTCTAAGTTCACAAGATAACCTA 57.690 33.333 0.00 0.00 30.67 3.08
1938 2526 8.196378 AGTTCTCTAAGTTCACAAGATAACCT 57.804 34.615 0.00 0.00 30.67 3.50
1939 2527 8.713271 CAAGTTCTCTAAGTTCACAAGATAACC 58.287 37.037 0.00 0.00 30.67 2.85
1940 2528 8.713271 CCAAGTTCTCTAAGTTCACAAGATAAC 58.287 37.037 0.00 0.00 30.57 1.89
1941 2529 8.647796 TCCAAGTTCTCTAAGTTCACAAGATAA 58.352 33.333 0.00 0.00 0.00 1.75
1942 2530 8.190326 TCCAAGTTCTCTAAGTTCACAAGATA 57.810 34.615 0.00 0.00 0.00 1.98
1943 2531 7.067496 TCCAAGTTCTCTAAGTTCACAAGAT 57.933 36.000 0.00 0.00 0.00 2.40
1944 2532 6.479972 TCCAAGTTCTCTAAGTTCACAAGA 57.520 37.500 0.00 0.00 0.00 3.02
1945 2533 7.158021 AGATCCAAGTTCTCTAAGTTCACAAG 58.842 38.462 0.00 0.00 0.00 3.16
1946 2534 7.067496 AGATCCAAGTTCTCTAAGTTCACAA 57.933 36.000 0.00 0.00 0.00 3.33
1947 2535 6.672266 AGATCCAAGTTCTCTAAGTTCACA 57.328 37.500 0.00 0.00 0.00 3.58
1948 2536 7.276878 GCTAAGATCCAAGTTCTCTAAGTTCAC 59.723 40.741 0.00 0.00 0.00 3.18
1949 2537 7.039011 TGCTAAGATCCAAGTTCTCTAAGTTCA 60.039 37.037 0.00 0.00 0.00 3.18
1950 2538 7.324178 TGCTAAGATCCAAGTTCTCTAAGTTC 58.676 38.462 0.00 0.00 0.00 3.01
1951 2539 7.246171 TGCTAAGATCCAAGTTCTCTAAGTT 57.754 36.000 0.00 0.00 0.00 2.66
1952 2540 6.859112 TGCTAAGATCCAAGTTCTCTAAGT 57.141 37.500 0.00 0.00 0.00 2.24
1953 2541 7.099764 TGTTGCTAAGATCCAAGTTCTCTAAG 58.900 38.462 0.00 0.00 0.00 2.18
1954 2542 7.004555 TGTTGCTAAGATCCAAGTTCTCTAA 57.995 36.000 0.00 0.00 0.00 2.10
1955 2543 6.605471 TGTTGCTAAGATCCAAGTTCTCTA 57.395 37.500 0.00 0.00 0.00 2.43
1956 2544 5.489792 TGTTGCTAAGATCCAAGTTCTCT 57.510 39.130 0.00 0.00 0.00 3.10
1957 2545 5.470098 TGTTGTTGCTAAGATCCAAGTTCTC 59.530 40.000 0.00 0.00 0.00 2.87
1958 2546 5.239525 GTGTTGTTGCTAAGATCCAAGTTCT 59.760 40.000 0.00 0.00 0.00 3.01
1959 2547 5.008613 TGTGTTGTTGCTAAGATCCAAGTTC 59.991 40.000 0.00 0.00 0.00 3.01
1960 2548 4.887071 TGTGTTGTTGCTAAGATCCAAGTT 59.113 37.500 0.00 0.00 0.00 2.66
1961 2549 4.275936 GTGTGTTGTTGCTAAGATCCAAGT 59.724 41.667 0.00 0.00 0.00 3.16
1962 2550 4.516698 AGTGTGTTGTTGCTAAGATCCAAG 59.483 41.667 0.00 0.00 0.00 3.61
1963 2551 4.460263 AGTGTGTTGTTGCTAAGATCCAA 58.540 39.130 0.00 0.00 0.00 3.53
1964 2552 4.065088 GAGTGTGTTGTTGCTAAGATCCA 58.935 43.478 0.00 0.00 0.00 3.41
1965 2553 4.319177 AGAGTGTGTTGTTGCTAAGATCC 58.681 43.478 0.00 0.00 0.00 3.36
1966 2554 4.991056 TGAGAGTGTGTTGTTGCTAAGATC 59.009 41.667 0.00 0.00 0.00 2.75
1967 2555 4.960938 TGAGAGTGTGTTGTTGCTAAGAT 58.039 39.130 0.00 0.00 0.00 2.40
1968 2556 4.371786 CTGAGAGTGTGTTGTTGCTAAGA 58.628 43.478 0.00 0.00 0.00 2.10
1969 2557 3.496130 CCTGAGAGTGTGTTGTTGCTAAG 59.504 47.826 0.00 0.00 0.00 2.18
1970 2558 3.466836 CCTGAGAGTGTGTTGTTGCTAA 58.533 45.455 0.00 0.00 0.00 3.09
1971 2559 2.806745 GCCTGAGAGTGTGTTGTTGCTA 60.807 50.000 0.00 0.00 0.00 3.49
1972 2560 1.959042 CCTGAGAGTGTGTTGTTGCT 58.041 50.000 0.00 0.00 0.00 3.91
1973 2561 0.308993 GCCTGAGAGTGTGTTGTTGC 59.691 55.000 0.00 0.00 0.00 4.17
1974 2562 1.869767 GAGCCTGAGAGTGTGTTGTTG 59.130 52.381 0.00 0.00 0.00 3.33
1975 2563 1.765314 AGAGCCTGAGAGTGTGTTGTT 59.235 47.619 0.00 0.00 0.00 2.83
1976 2564 1.418334 AGAGCCTGAGAGTGTGTTGT 58.582 50.000 0.00 0.00 0.00 3.32
1977 2565 3.430098 GGATAGAGCCTGAGAGTGTGTTG 60.430 52.174 0.00 0.00 0.00 3.33
1982 2570 2.079170 TGGGATAGAGCCTGAGAGTG 57.921 55.000 0.00 0.00 0.00 3.51
1983 2571 2.856760 TTGGGATAGAGCCTGAGAGT 57.143 50.000 0.00 0.00 0.00 3.24
1986 2574 8.428063 CCTATAATTATTGGGATAGAGCCTGAG 58.572 40.741 15.78 0.00 0.00 3.35
2004 2592 8.793592 GTGAGTTTTGTCAAGTTCCCTATAATT 58.206 33.333 0.00 0.00 0.00 1.40
2006 2594 7.514721 AGTGAGTTTTGTCAAGTTCCCTATAA 58.485 34.615 0.00 0.00 0.00 0.98
2013 2601 8.911247 ACAAATAAGTGAGTTTTGTCAAGTTC 57.089 30.769 0.00 0.00 38.79 3.01
2032 2620 6.609616 AGTTGGTTCTGAAAAAGGGACAAATA 59.390 34.615 0.00 0.00 0.00 1.40
2033 2621 5.425217 AGTTGGTTCTGAAAAAGGGACAAAT 59.575 36.000 0.00 0.00 0.00 2.32
2034 2622 4.775253 AGTTGGTTCTGAAAAAGGGACAAA 59.225 37.500 0.00 0.00 0.00 2.83
2039 2627 5.598416 AGAAAGTTGGTTCTGAAAAAGGG 57.402 39.130 0.00 0.00 36.48 3.95
2053 2785 6.017440 TCTCGTGGAATTTTACCAGAAAGTTG 60.017 38.462 0.00 0.00 38.14 3.16
2055 2787 5.617252 TCTCGTGGAATTTTACCAGAAAGT 58.383 37.500 0.00 0.00 38.14 2.66
2080 2812 6.106673 CCTGTAAGTTCACATGGTAACCTAG 58.893 44.000 0.00 0.00 0.00 3.02
2091 2823 4.593206 AGATCCAAGACCTGTAAGTTCACA 59.407 41.667 0.00 0.00 0.00 3.58
2101 2833 3.634397 TTGGCTAAGATCCAAGACCTG 57.366 47.619 0.00 0.00 38.57 4.00
2118 2850 2.618709 GGAACCTGAGAGTGTGTTTTGG 59.381 50.000 0.00 0.00 0.00 3.28
2154 3030 7.896811 AGGTTTTGAGTCTTATCAAATTTCCC 58.103 34.615 3.00 2.54 45.83 3.97
2165 3041 7.494298 GGAAAATTTGCAAGGTTTTGAGTCTTA 59.506 33.333 21.81 0.00 36.36 2.10
2168 3044 5.584251 TGGAAAATTTGCAAGGTTTTGAGTC 59.416 36.000 21.81 11.94 36.36 3.36
2175 3051 4.450976 GGTTCTGGAAAATTTGCAAGGTT 58.549 39.130 0.33 0.00 0.00 3.50
2540 3992 1.068588 GGTTGTTGAAAGCAAGGTCCC 59.931 52.381 0.00 0.00 34.01 4.46
2796 4248 1.705186 AGTTTGTAGCACTCACCCCAT 59.295 47.619 0.00 0.00 0.00 4.00
2984 4436 1.880027 GCATATTTCCCCGCAGTAAGG 59.120 52.381 0.00 0.00 0.00 2.69
3057 4509 5.832060 GTCTAGTATCTGCCCAGTTAGGTTA 59.168 44.000 0.00 0.00 34.66 2.85
3077 4529 2.637382 TGGCAGTGTCCAATTGAGTCTA 59.363 45.455 7.12 0.00 32.18 2.59
3265 4717 5.067544 TGTCATTCAGTGCATTGTGAGAAAA 59.932 36.000 9.23 0.00 0.00 2.29
3328 4780 3.619419 TGTTGTATGACACATCCATGGG 58.381 45.455 13.02 0.00 36.90 4.00
3971 5431 8.739039 CATCACAAACAATATTTAACCTCCTCA 58.261 33.333 0.00 0.00 0.00 3.86
4481 5942 9.853555 CATGTAACAAAATACATAGCTTCCAAA 57.146 29.630 0.00 0.00 43.00 3.28
4482 5943 9.237187 TCATGTAACAAAATACATAGCTTCCAA 57.763 29.630 0.00 0.00 43.00 3.53
4483 5944 8.673711 GTCATGTAACAAAATACATAGCTTCCA 58.326 33.333 0.00 0.00 43.00 3.53
4484 5945 8.673711 TGTCATGTAACAAAATACATAGCTTCC 58.326 33.333 0.00 0.00 43.00 3.46
4485 5946 9.708222 CTGTCATGTAACAAAATACATAGCTTC 57.292 33.333 0.00 0.00 43.00 3.86
4486 5947 9.231297 ACTGTCATGTAACAAAATACATAGCTT 57.769 29.630 0.00 0.00 43.00 3.74
4487 5948 8.792830 ACTGTCATGTAACAAAATACATAGCT 57.207 30.769 0.00 0.00 43.00 3.32
4518 5979 6.927416 ACGGAATGTGTGTAGAACTGTATTA 58.073 36.000 0.00 0.00 0.00 0.98
4534 5995 3.485463 TGAACTTTGGAGACGGAATGT 57.515 42.857 0.00 0.00 0.00 2.71
4535 5996 4.829064 TTTGAACTTTGGAGACGGAATG 57.171 40.909 0.00 0.00 0.00 2.67
4637 6098 6.202937 CACACAAACTTAACTTCGGCATTTA 58.797 36.000 0.00 0.00 0.00 1.40
4718 6179 3.939592 TGCAAGCTCTGAAGAATCATCAG 59.060 43.478 9.02 9.02 44.53 2.90
4857 6318 6.691388 GTGTGTCCAACAAATTCTCAAGTAAC 59.309 38.462 0.00 0.00 41.57 2.50
5363 6828 9.777297 ATGGTTACTACAAAATTTCAAGCAAAT 57.223 25.926 0.00 0.00 36.12 2.32
5381 6846 3.775261 AACGTGGTTACCATGGTTACT 57.225 42.857 27.99 10.26 37.09 2.24
5559 7025 2.108250 ACCAGTACAAAACATGAGGGCT 59.892 45.455 0.00 0.00 0.00 5.19
5772 7240 8.893727 GTTGTAGATGGCTATTTAGAACATTGT 58.106 33.333 13.32 0.00 31.44 2.71
5780 7248 4.315803 CGGGGTTGTAGATGGCTATTTAG 58.684 47.826 0.00 0.00 0.00 1.85
5820 7288 0.736636 GTACCATTTTAGCGGCACCC 59.263 55.000 1.45 0.00 0.00 4.61
5838 7306 5.847111 TTAGCGGACTATTGTACATGAGT 57.153 39.130 9.34 9.34 0.00 3.41
5865 7333 3.055094 GGGCTAATAGCAGGCAATAGCTA 60.055 47.826 14.76 0.00 44.75 3.32
5872 7340 1.118965 TAGCGGGCTAATAGCAGGCA 61.119 55.000 22.42 10.42 44.75 4.75
5951 7419 4.018050 AGGAAGTGATTGGCTTAGTTGGAT 60.018 41.667 0.00 0.00 0.00 3.41
6000 7468 4.096382 AGCCGAACGCAGAAAATAATTGAT 59.904 37.500 0.00 0.00 41.38 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.