Multiple sequence alignment - TraesCS4A01G490400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G490400 chr4A 100.000 4955 0 0 477 5431 740565998 740570952 0.000000e+00 9151.0
1 TraesCS4A01G490400 chr4A 97.940 1068 11 2 485 1541 739860210 739861277 0.000000e+00 1840.0
2 TraesCS4A01G490400 chr4A 98.418 948 15 0 1820 2767 739861351 739862298 0.000000e+00 1668.0
3 TraesCS4A01G490400 chr4A 89.447 796 62 8 744 1533 740023006 740022227 0.000000e+00 985.0
4 TraesCS4A01G490400 chr4A 87.735 799 59 16 756 1533 741587948 741588728 0.000000e+00 896.0
5 TraesCS4A01G490400 chr4A 87.600 750 70 12 2760 3495 739862357 739863097 0.000000e+00 848.0
6 TraesCS4A01G490400 chr4A 85.819 818 69 20 759 1549 741491489 741490692 0.000000e+00 824.0
7 TraesCS4A01G490400 chr4A 83.029 931 78 39 644 1550 739642517 739643391 0.000000e+00 771.0
8 TraesCS4A01G490400 chr4A 82.097 944 78 42 644 1550 742047640 742048529 0.000000e+00 723.0
9 TraesCS4A01G490400 chr4A 87.250 549 56 7 998 1536 740926794 740927338 1.000000e-171 614.0
10 TraesCS4A01G490400 chr4A 89.139 488 48 3 1050 1536 740457374 740456891 2.160000e-168 603.0
11 TraesCS4A01G490400 chr4A 86.813 546 61 5 998 1536 740268862 740269403 2.800000e-167 599.0
12 TraesCS4A01G490400 chr4A 86.813 546 58 8 998 1536 740303015 740303553 1.010000e-166 597.0
13 TraesCS4A01G490400 chr4A 100.000 323 0 0 1 323 740565522 740565844 1.010000e-166 597.0
14 TraesCS4A01G490400 chr4A 86.447 546 63 5 998 1536 740346267 740346808 6.060000e-164 588.0
15 TraesCS4A01G490400 chr4A 85.125 558 57 10 2321 2870 742129837 742130376 1.030000e-151 547.0
16 TraesCS4A01G490400 chr4A 95.975 323 12 1 1 323 739859749 739860070 1.730000e-144 523.0
17 TraesCS4A01G490400 chr4A 86.422 464 57 5 2633 3093 740927777 740928237 2.260000e-138 503.0
18 TraesCS4A01G490400 chr4A 83.438 320 38 12 2961 3274 742130373 742130683 3.200000e-72 283.0
19 TraesCS4A01G490400 chr4A 93.827 162 9 1 644 805 741491648 741491488 5.430000e-60 243.0
20 TraesCS4A01G490400 chr4A 93.827 162 9 1 644 805 741587792 741587952 5.430000e-60 243.0
21 TraesCS4A01G490400 chr4A 95.614 114 4 1 640 752 740023739 740023626 1.200000e-41 182.0
22 TraesCS4A01G490400 chr4A 85.124 121 9 7 1903 2014 740456945 740456825 1.240000e-21 115.0
23 TraesCS4A01G490400 chr4A 89.773 88 9 0 1770 1857 739920062 739919975 4.450000e-21 113.0
24 TraesCS4A01G490400 chr4A 93.443 61 4 0 1903 1963 742129280 742129340 2.080000e-14 91.6
25 TraesCS4A01G490400 chr4A 97.959 49 1 0 3226 3274 739734124 739734172 9.690000e-13 86.1
26 TraesCS4A01G490400 chr4A 92.982 57 4 0 1907 1963 739734036 739734092 3.490000e-12 84.2
27 TraesCS4A01G490400 chr4A 91.803 61 4 1 1903 1962 740303499 740303559 3.490000e-12 84.2
28 TraesCS4A01G490400 chr4A 97.872 47 1 0 1865 1911 742129158 742129204 1.250000e-11 82.4
29 TraesCS4A01G490400 chr4A 94.231 52 3 0 1907 1958 741796347 741796296 4.510000e-11 80.5
30 TraesCS4A01G490400 chr4A 91.228 57 4 1 1769 1825 719936950 719936895 5.830000e-10 76.8
31 TraesCS4A01G490400 chr4A 93.333 45 1 1 1972 2014 741588954 741588998 1.260000e-06 65.8
32 TraesCS4A01G490400 chr7D 95.077 1950 79 9 3497 5431 429700842 429702789 0.000000e+00 3053.0
33 TraesCS4A01G490400 chr7D 83.815 692 70 19 2810 3494 3900440 3901096 2.150000e-173 619.0
34 TraesCS4A01G490400 chr7D 83.387 626 71 17 1003 1602 3640467 3639849 2.860000e-152 549.0
35 TraesCS4A01G490400 chr7D 88.931 262 22 4 2488 2743 3900167 3900427 3.160000e-82 316.0
36 TraesCS4A01G490400 chr7D 80.357 336 45 13 964 1283 3795212 3794882 9.090000e-58 235.0
37 TraesCS4A01G490400 chr7D 85.455 220 16 4 2265 2481 3898284 3898490 1.180000e-51 215.0
38 TraesCS4A01G490400 chr7D 79.808 208 34 6 1658 1864 3793594 3793394 1.580000e-30 145.0
39 TraesCS4A01G490400 chr7D 93.103 87 5 1 560 645 448711236 448711150 5.710000e-25 126.0
40 TraesCS4A01G490400 chr7D 96.154 52 2 0 1907 1958 2611484 2611433 9.690000e-13 86.1
41 TraesCS4A01G490400 chr7D 92.857 56 4 0 1903 1958 3639967 3639912 1.250000e-11 82.4
42 TraesCS4A01G490400 chr5B 94.664 1949 89 8 3497 5431 530019883 530021830 0.000000e+00 3009.0
43 TraesCS4A01G490400 chr5B 91.809 1868 138 11 3497 5354 40014895 40013033 0.000000e+00 2588.0
44 TraesCS4A01G490400 chr5B 92.045 88 6 1 559 645 262349670 262349757 7.390000e-24 122.0
45 TraesCS4A01G490400 chr5D 94.613 1949 89 9 3497 5431 33791371 33789425 0.000000e+00 3003.0
46 TraesCS4A01G490400 chr1D 94.518 1952 89 9 3497 5431 454048449 454046499 0.000000e+00 2996.0
47 TraesCS4A01G490400 chr1D 94.186 86 4 1 560 644 489967253 489967338 4.410000e-26 130.0
48 TraesCS4A01G490400 chr1D 93.023 86 6 0 560 645 457823178 457823093 5.710000e-25 126.0
49 TraesCS4A01G490400 chr1D 87.037 54 6 1 1784 1836 32534588 32534641 5.870000e-05 60.2
50 TraesCS4A01G490400 chr2D 94.462 1950 88 9 3497 5431 43222427 43224371 0.000000e+00 2985.0
51 TraesCS4A01G490400 chr1B 94.208 1951 85 9 3497 5431 179289242 179291180 0.000000e+00 2952.0
52 TraesCS4A01G490400 chr4D 93.190 1909 116 9 3497 5395 61092553 61090649 0.000000e+00 2793.0
53 TraesCS4A01G490400 chr6B 92.369 1874 120 15 3497 5354 117030581 117028715 0.000000e+00 2647.0
54 TraesCS4A01G490400 chr6B 85.774 1912 225 29 3497 5395 652404197 652402320 0.000000e+00 1980.0
55 TraesCS4A01G490400 chr6B 95.402 87 3 1 560 645 100890994 100890908 2.640000e-28 137.0
56 TraesCS4A01G490400 chr6B 95.181 83 3 1 560 641 480686282 480686364 4.410000e-26 130.0
57 TraesCS4A01G490400 chr3B 91.676 1874 133 16 3497 5354 138522693 138520827 0.000000e+00 2575.0
58 TraesCS4A01G490400 chr3B 85.600 1500 173 22 3909 5392 699331201 699332673 0.000000e+00 1533.0
59 TraesCS4A01G490400 chr3B 89.078 293 28 2 30 321 412442760 412443049 1.440000e-95 361.0
60 TraesCS4A01G490400 chr7B 91.870 1845 114 18 3523 5354 321847809 321845988 0.000000e+00 2543.0
61 TraesCS4A01G490400 chr7B 86.340 1552 169 23 3859 5395 46341567 46340044 0.000000e+00 1652.0
62 TraesCS4A01G490400 chr7B 88.514 296 31 3 28 321 601630209 601630503 6.690000e-94 355.0
63 TraesCS4A01G490400 chr7B 87.119 295 36 2 28 321 603597785 603597492 3.140000e-87 333.0
64 TraesCS4A01G490400 chr7B 86.254 291 38 2 29 318 663974494 663974205 1.140000e-81 315.0
65 TraesCS4A01G490400 chr7B 85.382 301 38 5 20 318 654172691 654172987 1.900000e-79 307.0
66 TraesCS4A01G490400 chr7B 92.135 89 4 2 560 646 609745722 609745635 7.390000e-24 122.0
67 TraesCS4A01G490400 chr7A 93.307 1524 84 10 3496 5006 336719304 336720822 0.000000e+00 2233.0
68 TraesCS4A01G490400 chr7A 87.652 907 76 14 644 1534 3284931 3285817 0.000000e+00 1022.0
69 TraesCS4A01G490400 chr7A 87.442 868 92 10 2634 3496 3286345 3287200 0.000000e+00 983.0
70 TraesCS4A01G490400 chr7A 84.500 600 67 14 1003 1581 3634750 3634156 2.200000e-158 569.0
71 TraesCS4A01G490400 chr7A 83.251 406 55 7 3103 3496 2121658 2121254 1.440000e-95 361.0
72 TraesCS4A01G490400 chr7A 88.426 216 13 1 2265 2480 3213044 3212841 3.250000e-62 250.0
73 TraesCS4A01G490400 chr7A 84.231 260 24 9 1357 1609 3213654 3213405 2.530000e-58 237.0
74 TraesCS4A01G490400 chr7A 88.235 170 17 1 2318 2484 2001731 2001562 3.320000e-47 200.0
75 TraesCS4A01G490400 chr7A 83.333 210 19 8 988 1195 3214638 3214443 4.320000e-41 180.0
76 TraesCS4A01G490400 chr7A 85.276 163 18 4 2028 2190 3285868 3286024 4.350000e-36 163.0
77 TraesCS4A01G490400 chr7A 77.953 254 30 13 1619 1861 3285913 3286151 9.490000e-28 135.0
78 TraesCS4A01G490400 chr7A 93.220 59 3 1 1905 1962 3285767 3285825 9.690000e-13 86.1
79 TraesCS4A01G490400 chr7A 96.226 53 1 1 1718 1770 3285976 3286027 9.690000e-13 86.1
80 TraesCS4A01G490400 chr7A 92.453 53 4 0 1903 1955 3213526 3213474 5.830000e-10 76.8
81 TraesCS4A01G490400 chr4B 89.153 295 29 3 28 320 670806753 670807046 1.110000e-96 364.0
82 TraesCS4A01G490400 chr3D 86.689 293 36 3 29 318 591359508 591359800 6.790000e-84 322.0
83 TraesCS4A01G490400 chr2B 86.735 294 33 6 28 318 63821140 63820850 6.790000e-84 322.0
84 TraesCS4A01G490400 chr2B 94.253 87 4 1 560 645 26279909 26279823 1.230000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G490400 chr4A 740565522 740570952 5430 False 4874.000000 9151 100.000000 1 5431 2 chr4A.!!$F8 5430
1 TraesCS4A01G490400 chr4A 739859749 739863097 3348 False 1219.750000 1840 94.983250 1 3495 4 chr4A.!!$F6 3494
2 TraesCS4A01G490400 chr4A 739642517 739643391 874 False 771.000000 771 83.029000 644 1550 1 chr4A.!!$F1 906
3 TraesCS4A01G490400 chr4A 742047640 742048529 889 False 723.000000 723 82.097000 644 1550 1 chr4A.!!$F4 906
4 TraesCS4A01G490400 chr4A 740268862 740269403 541 False 599.000000 599 86.813000 998 1536 1 chr4A.!!$F2 538
5 TraesCS4A01G490400 chr4A 740346267 740346808 541 False 588.000000 588 86.447000 998 1536 1 chr4A.!!$F3 538
6 TraesCS4A01G490400 chr4A 740022227 740023739 1512 True 583.500000 985 92.530500 640 1533 2 chr4A.!!$R4 893
7 TraesCS4A01G490400 chr4A 740926794 740928237 1443 False 558.500000 614 86.836000 998 3093 2 chr4A.!!$F9 2095
8 TraesCS4A01G490400 chr4A 741490692 741491648 956 True 533.500000 824 89.823000 644 1549 2 chr4A.!!$R6 905
9 TraesCS4A01G490400 chr4A 741587792 741588998 1206 False 401.600000 896 91.631667 644 2014 3 chr4A.!!$F10 1370
10 TraesCS4A01G490400 chr4A 740456825 740457374 549 True 359.000000 603 87.131500 1050 2014 2 chr4A.!!$R5 964
11 TraesCS4A01G490400 chr4A 740303015 740303559 544 False 340.600000 597 89.308000 998 1962 2 chr4A.!!$F7 964
12 TraesCS4A01G490400 chr4A 742129158 742130683 1525 False 251.000000 547 89.969500 1865 3274 4 chr4A.!!$F11 1409
13 TraesCS4A01G490400 chr7D 429700842 429702789 1947 False 3053.000000 3053 95.077000 3497 5431 1 chr7D.!!$F1 1934
14 TraesCS4A01G490400 chr7D 3898284 3901096 2812 False 383.333333 619 86.067000 2265 3494 3 chr7D.!!$F2 1229
15 TraesCS4A01G490400 chr7D 3639849 3640467 618 True 315.700000 549 88.122000 1003 1958 2 chr7D.!!$R3 955
16 TraesCS4A01G490400 chr5B 530019883 530021830 1947 False 3009.000000 3009 94.664000 3497 5431 1 chr5B.!!$F2 1934
17 TraesCS4A01G490400 chr5B 40013033 40014895 1862 True 2588.000000 2588 91.809000 3497 5354 1 chr5B.!!$R1 1857
18 TraesCS4A01G490400 chr5D 33789425 33791371 1946 True 3003.000000 3003 94.613000 3497 5431 1 chr5D.!!$R1 1934
19 TraesCS4A01G490400 chr1D 454046499 454048449 1950 True 2996.000000 2996 94.518000 3497 5431 1 chr1D.!!$R1 1934
20 TraesCS4A01G490400 chr2D 43222427 43224371 1944 False 2985.000000 2985 94.462000 3497 5431 1 chr2D.!!$F1 1934
21 TraesCS4A01G490400 chr1B 179289242 179291180 1938 False 2952.000000 2952 94.208000 3497 5431 1 chr1B.!!$F1 1934
22 TraesCS4A01G490400 chr4D 61090649 61092553 1904 True 2793.000000 2793 93.190000 3497 5395 1 chr4D.!!$R1 1898
23 TraesCS4A01G490400 chr6B 117028715 117030581 1866 True 2647.000000 2647 92.369000 3497 5354 1 chr6B.!!$R2 1857
24 TraesCS4A01G490400 chr6B 652402320 652404197 1877 True 1980.000000 1980 85.774000 3497 5395 1 chr6B.!!$R3 1898
25 TraesCS4A01G490400 chr3B 138520827 138522693 1866 True 2575.000000 2575 91.676000 3497 5354 1 chr3B.!!$R1 1857
26 TraesCS4A01G490400 chr3B 699331201 699332673 1472 False 1533.000000 1533 85.600000 3909 5392 1 chr3B.!!$F2 1483
27 TraesCS4A01G490400 chr7B 321845988 321847809 1821 True 2543.000000 2543 91.870000 3523 5354 1 chr7B.!!$R2 1831
28 TraesCS4A01G490400 chr7B 46340044 46341567 1523 True 1652.000000 1652 86.340000 3859 5395 1 chr7B.!!$R1 1536
29 TraesCS4A01G490400 chr7A 336719304 336720822 1518 False 2233.000000 2233 93.307000 3496 5006 1 chr7A.!!$F1 1510
30 TraesCS4A01G490400 chr7A 3634156 3634750 594 True 569.000000 569 84.500000 1003 1581 1 chr7A.!!$R3 578
31 TraesCS4A01G490400 chr7A 3284931 3287200 2269 False 412.533333 1022 87.961500 644 3496 6 chr7A.!!$F2 2852

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.100503 GGGCGCGCTTCACAATTTAT 59.899 50.000 32.29 0.00 0.00 1.40 F
776 1461 2.912956 TCCAGTCTAATCCCAGTGCTTT 59.087 45.455 0.00 0.00 0.00 3.51 F
1619 2345 0.036294 ACCTGCTTAGAGCCGTTTCC 60.036 55.000 0.00 0.00 41.51 3.13 F
1807 2533 0.179187 CACACCTAGCTCACGTCGAG 60.179 60.000 0.00 9.73 45.37 4.04 F
2701 5873 0.180171 TTGTCATAGCCACCATCCCG 59.820 55.000 0.00 0.00 0.00 5.14 F
3122 6363 0.517316 GTGACCGCTGCCACTAAAAG 59.483 55.000 0.00 0.00 0.00 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1600 2326 0.036294 GGAAACGGCTCTAAGCAGGT 60.036 55.000 4.21 0.00 44.75 4.00 R
1815 2541 0.179108 GCCTACCTGTCGTGTCATCC 60.179 60.000 0.00 0.00 0.00 3.51 R
3108 6349 0.165944 CGGTTCTTTTAGTGGCAGCG 59.834 55.000 0.00 0.00 0.00 5.18 R
3484 6739 0.256752 TAGTAGTGCGAGGGCCACTA 59.743 55.000 6.18 1.13 38.85 2.74 R
4299 7574 1.012086 CGGATCTCACCTGTGCATTG 58.988 55.000 0.00 0.00 0.00 2.82 R
5058 8353 3.086282 CCATGCCATGCAAGATGCTATA 58.914 45.455 0.00 0.00 45.31 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.465532 TCAATAAAATGCAGTCAAAGCCA 57.534 34.783 0.00 0.00 0.00 4.75
109 110 1.002430 TCGAACAGCTCCAGCAGAAAT 59.998 47.619 0.48 0.00 45.16 2.17
123 124 5.153513 CAGCAGAAATTGTAGCGCTAAAAA 58.846 37.500 23.31 18.36 0.00 1.94
146 147 2.429069 GGGTGCGCGCTGAAAAAG 60.429 61.111 33.29 0.00 0.00 2.27
185 186 4.794648 TGGGCTTCGGATTGGGCG 62.795 66.667 0.00 0.00 0.00 6.13
200 201 0.100503 GGGCGCGCTTCACAATTTAT 59.899 50.000 32.29 0.00 0.00 1.40
223 224 3.097114 GTTCTTTTTGGGCGCGCG 61.097 61.111 28.44 28.44 0.00 6.86
578 579 6.336566 ACTGCTATGACTTGATTGTACTCTG 58.663 40.000 0.00 0.00 0.00 3.35
597 598 5.089970 TCTGTACTGCTATGTTTGATGCT 57.910 39.130 0.00 0.00 0.00 3.79
741 753 4.218312 GGCCCATTGTAGGATGAAGAATT 58.782 43.478 0.00 0.00 0.00 2.17
776 1461 2.912956 TCCAGTCTAATCCCAGTGCTTT 59.087 45.455 0.00 0.00 0.00 3.51
843 1549 7.215007 GCGTTTGAGGACGTAATTTGTAATAAC 59.785 37.037 0.00 0.00 44.50 1.89
855 1566 5.721876 TTTGTAATAACGATAAGGCACGG 57.278 39.130 0.00 0.00 0.00 4.94
1562 2288 8.596781 TTTTATCCCTCTATACTGCTATCTCC 57.403 38.462 0.00 0.00 0.00 3.71
1563 2289 7.532459 TTATCCCTCTATACTGCTATCTCCT 57.468 40.000 0.00 0.00 0.00 3.69
1564 2290 8.640033 TTATCCCTCTATACTGCTATCTCCTA 57.360 38.462 0.00 0.00 0.00 2.94
1565 2291 6.316280 TCCCTCTATACTGCTATCTCCTAC 57.684 45.833 0.00 0.00 0.00 3.18
1566 2292 5.791141 TCCCTCTATACTGCTATCTCCTACA 59.209 44.000 0.00 0.00 0.00 2.74
1567 2293 6.274908 TCCCTCTATACTGCTATCTCCTACAA 59.725 42.308 0.00 0.00 0.00 2.41
1568 2294 6.948886 CCCTCTATACTGCTATCTCCTACAAA 59.051 42.308 0.00 0.00 0.00 2.83
1569 2295 7.451877 CCCTCTATACTGCTATCTCCTACAAAA 59.548 40.741 0.00 0.00 0.00 2.44
1570 2296 8.861086 CCTCTATACTGCTATCTCCTACAAAAA 58.139 37.037 0.00 0.00 0.00 1.94
1571 2297 9.906660 CTCTATACTGCTATCTCCTACAAAAAG 57.093 37.037 0.00 0.00 0.00 2.27
1572 2298 9.642343 TCTATACTGCTATCTCCTACAAAAAGA 57.358 33.333 0.00 0.00 0.00 2.52
1575 2301 9.959721 ATACTGCTATCTCCTACAAAAAGAAAA 57.040 29.630 0.00 0.00 0.00 2.29
1576 2302 8.329203 ACTGCTATCTCCTACAAAAAGAAAAG 57.671 34.615 0.00 0.00 0.00 2.27
1577 2303 8.157476 ACTGCTATCTCCTACAAAAAGAAAAGA 58.843 33.333 0.00 0.00 0.00 2.52
1578 2304 8.918202 TGCTATCTCCTACAAAAAGAAAAGAA 57.082 30.769 0.00 0.00 0.00 2.52
1579 2305 9.349713 TGCTATCTCCTACAAAAAGAAAAGAAA 57.650 29.630 0.00 0.00 0.00 2.52
1586 2312 9.647797 TCCTACAAAAAGAAAAGAAAAGAAACC 57.352 29.630 0.00 0.00 0.00 3.27
1587 2313 8.879759 CCTACAAAAAGAAAAGAAAAGAAACCC 58.120 33.333 0.00 0.00 0.00 4.11
1588 2314 7.359262 ACAAAAAGAAAAGAAAAGAAACCCG 57.641 32.000 0.00 0.00 0.00 5.28
1589 2315 7.156000 ACAAAAAGAAAAGAAAAGAAACCCGA 58.844 30.769 0.00 0.00 0.00 5.14
1590 2316 7.822334 ACAAAAAGAAAAGAAAAGAAACCCGAT 59.178 29.630 0.00 0.00 0.00 4.18
1591 2317 8.328146 CAAAAAGAAAAGAAAAGAAACCCGATC 58.672 33.333 0.00 0.00 0.00 3.69
1592 2318 6.709018 AAGAAAAGAAAAGAAACCCGATCA 57.291 33.333 0.00 0.00 0.00 2.92
1593 2319 6.709018 AGAAAAGAAAAGAAACCCGATCAA 57.291 33.333 0.00 0.00 0.00 2.57
1594 2320 6.739112 AGAAAAGAAAAGAAACCCGATCAAG 58.261 36.000 0.00 0.00 0.00 3.02
1595 2321 6.546034 AGAAAAGAAAAGAAACCCGATCAAGA 59.454 34.615 0.00 0.00 0.00 3.02
1596 2322 5.690997 AAGAAAAGAAACCCGATCAAGAC 57.309 39.130 0.00 0.00 0.00 3.01
1597 2323 4.974399 AGAAAAGAAACCCGATCAAGACT 58.026 39.130 0.00 0.00 0.00 3.24
1598 2324 4.757149 AGAAAAGAAACCCGATCAAGACTG 59.243 41.667 0.00 0.00 0.00 3.51
1599 2325 4.351874 AAAGAAACCCGATCAAGACTGA 57.648 40.909 0.00 0.00 35.56 3.41
1600 2326 4.351874 AAGAAACCCGATCAAGACTGAA 57.648 40.909 0.00 0.00 34.49 3.02
1601 2327 3.665190 AGAAACCCGATCAAGACTGAAC 58.335 45.455 0.00 0.00 34.49 3.18
1602 2328 2.474410 AACCCGATCAAGACTGAACC 57.526 50.000 0.00 0.00 34.49 3.62
1603 2329 1.645710 ACCCGATCAAGACTGAACCT 58.354 50.000 0.00 0.00 34.49 3.50
1604 2330 1.276421 ACCCGATCAAGACTGAACCTG 59.724 52.381 0.00 0.00 34.49 4.00
1605 2331 1.363744 CCGATCAAGACTGAACCTGC 58.636 55.000 0.00 0.00 34.49 4.85
1606 2332 1.066573 CCGATCAAGACTGAACCTGCT 60.067 52.381 0.00 0.00 34.49 4.24
1607 2333 2.613977 CCGATCAAGACTGAACCTGCTT 60.614 50.000 0.00 0.00 34.49 3.91
1608 2334 3.368427 CCGATCAAGACTGAACCTGCTTA 60.368 47.826 0.00 0.00 34.49 3.09
1609 2335 3.862267 CGATCAAGACTGAACCTGCTTAG 59.138 47.826 0.00 0.00 34.49 2.18
1610 2336 4.380973 CGATCAAGACTGAACCTGCTTAGA 60.381 45.833 0.00 0.00 34.49 2.10
1611 2337 4.527509 TCAAGACTGAACCTGCTTAGAG 57.472 45.455 0.00 0.00 0.00 2.43
1612 2338 2.999355 CAAGACTGAACCTGCTTAGAGC 59.001 50.000 0.00 0.00 42.82 4.09
1613 2339 1.552792 AGACTGAACCTGCTTAGAGCC 59.447 52.381 0.00 0.00 41.51 4.70
1614 2340 0.247736 ACTGAACCTGCTTAGAGCCG 59.752 55.000 0.00 0.00 41.51 5.52
1615 2341 0.247736 CTGAACCTGCTTAGAGCCGT 59.752 55.000 0.00 0.00 41.51 5.68
1616 2342 0.685097 TGAACCTGCTTAGAGCCGTT 59.315 50.000 0.00 0.38 41.51 4.44
1617 2343 1.071699 TGAACCTGCTTAGAGCCGTTT 59.928 47.619 0.00 0.00 41.51 3.60
1618 2344 1.732809 GAACCTGCTTAGAGCCGTTTC 59.267 52.381 0.00 0.00 41.51 2.78
1619 2345 0.036294 ACCTGCTTAGAGCCGTTTCC 60.036 55.000 0.00 0.00 41.51 3.13
1620 2346 0.250513 CCTGCTTAGAGCCGTTTCCT 59.749 55.000 0.00 0.00 41.51 3.36
1621 2347 1.480954 CCTGCTTAGAGCCGTTTCCTA 59.519 52.381 0.00 0.00 41.51 2.94
1622 2348 2.482142 CCTGCTTAGAGCCGTTTCCTAG 60.482 54.545 0.00 0.00 41.51 3.02
1623 2349 1.134788 TGCTTAGAGCCGTTTCCTAGC 60.135 52.381 0.00 0.00 41.51 3.42
1624 2350 1.137282 GCTTAGAGCCGTTTCCTAGCT 59.863 52.381 0.00 0.00 40.24 3.32
1625 2351 2.815478 CTTAGAGCCGTTTCCTAGCTG 58.185 52.381 0.00 0.00 36.87 4.24
1626 2352 0.460311 TAGAGCCGTTTCCTAGCTGC 59.540 55.000 0.00 0.00 36.87 5.25
1627 2353 1.219393 GAGCCGTTTCCTAGCTGCT 59.781 57.895 7.57 7.57 36.87 4.24
1628 2354 1.078848 AGCCGTTTCCTAGCTGCTG 60.079 57.895 13.43 2.21 34.99 4.41
1629 2355 1.376037 GCCGTTTCCTAGCTGCTGT 60.376 57.895 13.43 0.00 0.00 4.40
1630 2356 0.955919 GCCGTTTCCTAGCTGCTGTT 60.956 55.000 13.43 0.00 0.00 3.16
1631 2357 1.674817 GCCGTTTCCTAGCTGCTGTTA 60.675 52.381 13.43 0.00 0.00 2.41
1632 2358 2.906354 CCGTTTCCTAGCTGCTGTTAT 58.094 47.619 13.43 0.00 0.00 1.89
1633 2359 3.270877 CCGTTTCCTAGCTGCTGTTATT 58.729 45.455 13.43 0.00 0.00 1.40
1634 2360 3.689649 CCGTTTCCTAGCTGCTGTTATTT 59.310 43.478 13.43 0.00 0.00 1.40
1635 2361 4.156008 CCGTTTCCTAGCTGCTGTTATTTT 59.844 41.667 13.43 0.00 0.00 1.82
1636 2362 5.324697 CGTTTCCTAGCTGCTGTTATTTTC 58.675 41.667 13.43 0.00 0.00 2.29
1637 2363 5.122396 CGTTTCCTAGCTGCTGTTATTTTCT 59.878 40.000 13.43 0.00 0.00 2.52
1638 2364 6.348540 CGTTTCCTAGCTGCTGTTATTTTCTT 60.349 38.462 13.43 0.00 0.00 2.52
1639 2365 7.148474 CGTTTCCTAGCTGCTGTTATTTTCTTA 60.148 37.037 13.43 0.00 0.00 2.10
1640 2366 8.678199 GTTTCCTAGCTGCTGTTATTTTCTTAT 58.322 33.333 13.43 0.00 0.00 1.73
1641 2367 9.899661 TTTCCTAGCTGCTGTTATTTTCTTATA 57.100 29.630 13.43 0.00 0.00 0.98
1642 2368 9.899661 TTCCTAGCTGCTGTTATTTTCTTATAA 57.100 29.630 13.43 0.00 0.00 0.98
1643 2369 9.547753 TCCTAGCTGCTGTTATTTTCTTATAAG 57.452 33.333 13.43 6.11 0.00 1.73
1644 2370 9.331282 CCTAGCTGCTGTTATTTTCTTATAAGT 57.669 33.333 13.43 0.00 0.00 2.24
1648 2374 9.439537 GCTGCTGTTATTTTCTTATAAGTTAGC 57.560 33.333 12.19 10.93 0.00 3.09
1671 2397 3.866883 AAAATAAACGGCCAGGACATG 57.133 42.857 2.24 0.00 0.00 3.21
1672 2398 2.507407 AATAAACGGCCAGGACATGT 57.493 45.000 2.24 0.00 0.00 3.21
1673 2399 1.750193 ATAAACGGCCAGGACATGTG 58.250 50.000 1.15 0.00 0.00 3.21
1674 2400 0.958382 TAAACGGCCAGGACATGTGC 60.958 55.000 9.70 9.70 0.00 4.57
1675 2401 4.722700 ACGGCCAGGACATGTGCC 62.723 66.667 14.38 13.93 40.15 5.01
1676 2402 4.415150 CGGCCAGGACATGTGCCT 62.415 66.667 19.40 14.84 40.91 4.75
1681 2407 3.327600 CAGGACATGTGCCTGTTCA 57.672 52.632 24.75 0.00 46.19 3.18
1682 2408 1.830279 CAGGACATGTGCCTGTTCAT 58.170 50.000 24.75 2.49 46.19 2.57
1683 2409 2.165167 CAGGACATGTGCCTGTTCATT 58.835 47.619 24.75 1.85 46.19 2.57
1684 2410 2.559668 CAGGACATGTGCCTGTTCATTT 59.440 45.455 24.75 1.23 46.19 2.32
1685 2411 2.821969 AGGACATGTGCCTGTTCATTTC 59.178 45.455 14.38 0.00 33.59 2.17
1686 2412 2.821969 GGACATGTGCCTGTTCATTTCT 59.178 45.455 1.15 0.00 0.00 2.52
1687 2413 3.256631 GGACATGTGCCTGTTCATTTCTT 59.743 43.478 1.15 0.00 0.00 2.52
1688 2414 4.232221 GACATGTGCCTGTTCATTTCTTG 58.768 43.478 1.15 0.00 0.00 3.02
1689 2415 3.006110 ACATGTGCCTGTTCATTTCTTGG 59.994 43.478 0.00 0.00 0.00 3.61
1690 2416 2.665165 TGTGCCTGTTCATTTCTTGGT 58.335 42.857 0.00 0.00 0.00 3.67
1691 2417 3.030291 TGTGCCTGTTCATTTCTTGGTT 58.970 40.909 0.00 0.00 0.00 3.67
1692 2418 3.181477 TGTGCCTGTTCATTTCTTGGTTG 60.181 43.478 0.00 0.00 0.00 3.77
1693 2419 3.068024 GTGCCTGTTCATTTCTTGGTTGA 59.932 43.478 0.00 0.00 0.00 3.18
1694 2420 3.318839 TGCCTGTTCATTTCTTGGTTGAG 59.681 43.478 0.00 0.00 0.00 3.02
1695 2421 3.858503 GCCTGTTCATTTCTTGGTTGAGC 60.859 47.826 0.00 0.00 0.00 4.26
1696 2422 3.571401 CCTGTTCATTTCTTGGTTGAGCT 59.429 43.478 0.00 0.00 0.00 4.09
1697 2423 4.543692 CTGTTCATTTCTTGGTTGAGCTG 58.456 43.478 0.00 0.00 0.00 4.24
1698 2424 4.206375 TGTTCATTTCTTGGTTGAGCTGA 58.794 39.130 0.00 0.00 0.00 4.26
1699 2425 4.828939 TGTTCATTTCTTGGTTGAGCTGAT 59.171 37.500 0.00 0.00 0.00 2.90
1700 2426 5.302568 TGTTCATTTCTTGGTTGAGCTGATT 59.697 36.000 0.00 0.00 0.00 2.57
1701 2427 6.183360 TGTTCATTTCTTGGTTGAGCTGATTT 60.183 34.615 0.00 0.00 0.00 2.17
1702 2428 6.017400 TCATTTCTTGGTTGAGCTGATTTC 57.983 37.500 0.00 0.00 0.00 2.17
1703 2429 5.771666 TCATTTCTTGGTTGAGCTGATTTCT 59.228 36.000 0.00 0.00 0.00 2.52
1704 2430 5.695851 TTTCTTGGTTGAGCTGATTTCTC 57.304 39.130 0.00 0.00 0.00 2.87
1705 2431 3.679389 TCTTGGTTGAGCTGATTTCTCC 58.321 45.455 0.00 0.00 0.00 3.71
1706 2432 3.328931 TCTTGGTTGAGCTGATTTCTCCT 59.671 43.478 0.00 0.00 0.00 3.69
1707 2433 3.340814 TGGTTGAGCTGATTTCTCCTC 57.659 47.619 0.00 0.00 0.00 3.71
1708 2434 2.909006 TGGTTGAGCTGATTTCTCCTCT 59.091 45.455 0.00 0.00 0.00 3.69
1709 2435 3.328931 TGGTTGAGCTGATTTCTCCTCTT 59.671 43.478 0.00 0.00 0.00 2.85
1710 2436 4.202503 TGGTTGAGCTGATTTCTCCTCTTT 60.203 41.667 0.00 0.00 0.00 2.52
1711 2437 4.764308 GGTTGAGCTGATTTCTCCTCTTTT 59.236 41.667 0.00 0.00 0.00 2.27
1712 2438 5.242615 GGTTGAGCTGATTTCTCCTCTTTTT 59.757 40.000 0.00 0.00 0.00 1.94
1735 2461 3.915437 TTTTGGTTGAGCCGATTTCTC 57.085 42.857 0.00 0.00 41.21 2.87
1736 2462 1.821216 TTGGTTGAGCCGATTTCTCC 58.179 50.000 0.00 0.00 41.21 3.71
1737 2463 0.984230 TGGTTGAGCCGATTTCTCCT 59.016 50.000 0.00 0.00 41.21 3.69
1738 2464 1.339055 TGGTTGAGCCGATTTCTCCTG 60.339 52.381 0.00 0.00 41.21 3.86
1739 2465 1.339151 GGTTGAGCCGATTTCTCCTGT 60.339 52.381 0.00 0.00 0.00 4.00
1740 2466 2.427506 GTTGAGCCGATTTCTCCTGTT 58.572 47.619 0.00 0.00 0.00 3.16
1741 2467 3.596214 GTTGAGCCGATTTCTCCTGTTA 58.404 45.455 0.00 0.00 0.00 2.41
1742 2468 3.526931 TGAGCCGATTTCTCCTGTTAG 57.473 47.619 0.00 0.00 0.00 2.34
1743 2469 2.832129 TGAGCCGATTTCTCCTGTTAGT 59.168 45.455 0.00 0.00 0.00 2.24
1744 2470 3.260884 TGAGCCGATTTCTCCTGTTAGTT 59.739 43.478 0.00 0.00 0.00 2.24
1745 2471 4.464951 TGAGCCGATTTCTCCTGTTAGTTA 59.535 41.667 0.00 0.00 0.00 2.24
1746 2472 5.012328 AGCCGATTTCTCCTGTTAGTTAG 57.988 43.478 0.00 0.00 0.00 2.34
1747 2473 4.466726 AGCCGATTTCTCCTGTTAGTTAGT 59.533 41.667 0.00 0.00 0.00 2.24
1748 2474 5.046520 AGCCGATTTCTCCTGTTAGTTAGTT 60.047 40.000 0.00 0.00 0.00 2.24
1749 2475 6.154021 AGCCGATTTCTCCTGTTAGTTAGTTA 59.846 38.462 0.00 0.00 0.00 2.24
1750 2476 6.476053 GCCGATTTCTCCTGTTAGTTAGTTAG 59.524 42.308 0.00 0.00 0.00 2.34
1751 2477 6.476053 CCGATTTCTCCTGTTAGTTAGTTAGC 59.524 42.308 0.00 0.00 0.00 3.09
1752 2478 7.259161 CGATTTCTCCTGTTAGTTAGTTAGCT 58.741 38.462 0.00 0.00 0.00 3.32
1753 2479 7.221067 CGATTTCTCCTGTTAGTTAGTTAGCTG 59.779 40.741 0.00 0.00 0.00 4.24
1754 2480 7.534723 TTTCTCCTGTTAGTTAGTTAGCTGA 57.465 36.000 0.00 0.00 0.00 4.26
1755 2481 7.534723 TTCTCCTGTTAGTTAGTTAGCTGAA 57.465 36.000 0.00 0.00 0.00 3.02
1756 2482 7.719871 TCTCCTGTTAGTTAGTTAGCTGAAT 57.280 36.000 0.00 0.00 0.00 2.57
1757 2483 8.818622 TCTCCTGTTAGTTAGTTAGCTGAATA 57.181 34.615 0.00 0.00 0.00 1.75
1758 2484 9.251440 TCTCCTGTTAGTTAGTTAGCTGAATAA 57.749 33.333 0.00 0.00 0.00 1.40
1759 2485 9.522804 CTCCTGTTAGTTAGTTAGCTGAATAAG 57.477 37.037 0.00 0.00 0.00 1.73
1760 2486 9.032624 TCCTGTTAGTTAGTTAGCTGAATAAGT 57.967 33.333 10.39 10.39 0.00 2.24
1761 2487 9.088512 CCTGTTAGTTAGTTAGCTGAATAAGTG 57.911 37.037 14.27 0.56 0.00 3.16
1762 2488 8.475331 TGTTAGTTAGTTAGCTGAATAAGTGC 57.525 34.615 14.27 8.75 0.00 4.40
1763 2489 8.092068 TGTTAGTTAGTTAGCTGAATAAGTGCA 58.908 33.333 14.27 10.68 0.00 4.57
1764 2490 8.596380 GTTAGTTAGTTAGCTGAATAAGTGCAG 58.404 37.037 14.27 0.00 35.28 4.41
1771 2497 2.372264 CTGAATAAGTGCAGCCATGGT 58.628 47.619 14.67 0.00 0.00 3.55
1772 2498 2.093890 TGAATAAGTGCAGCCATGGTG 58.906 47.619 14.67 11.47 0.00 4.17
1773 2499 2.290832 TGAATAAGTGCAGCCATGGTGA 60.291 45.455 14.67 0.00 32.22 4.02
1774 2500 2.742428 ATAAGTGCAGCCATGGTGAT 57.258 45.000 14.67 0.00 32.22 3.06
1775 2501 2.042686 TAAGTGCAGCCATGGTGATC 57.957 50.000 14.67 7.20 32.22 2.92
1776 2502 1.028330 AAGTGCAGCCATGGTGATCG 61.028 55.000 14.67 0.00 32.22 3.69
1777 2503 2.825387 TGCAGCCATGGTGATCGC 60.825 61.111 14.67 9.56 32.22 4.58
1778 2504 3.945434 GCAGCCATGGTGATCGCG 61.945 66.667 14.67 0.00 32.22 5.87
1779 2505 3.274586 CAGCCATGGTGATCGCGG 61.275 66.667 14.67 0.00 32.22 6.46
1782 2508 2.823593 CCATGGTGATCGCGGCAA 60.824 61.111 6.13 0.00 0.00 4.52
1783 2509 2.711311 CATGGTGATCGCGGCAAG 59.289 61.111 6.13 0.00 0.00 4.01
1784 2510 2.108514 CATGGTGATCGCGGCAAGT 61.109 57.895 6.13 0.00 0.00 3.16
1785 2511 2.108514 ATGGTGATCGCGGCAAGTG 61.109 57.895 6.13 0.00 0.00 3.16
1786 2512 4.166011 GGTGATCGCGGCAAGTGC 62.166 66.667 6.13 0.00 41.14 4.40
1800 2526 2.048222 GTGCGCACACCTAGCTCA 60.048 61.111 34.52 0.00 41.21 4.26
1801 2527 2.048222 TGCGCACACCTAGCTCAC 60.048 61.111 5.66 0.00 0.00 3.51
1802 2528 3.181967 GCGCACACCTAGCTCACG 61.182 66.667 0.30 0.00 0.00 4.35
1803 2529 2.258591 CGCACACCTAGCTCACGT 59.741 61.111 0.00 0.00 0.00 4.49
1804 2530 1.801913 CGCACACCTAGCTCACGTC 60.802 63.158 0.00 0.00 0.00 4.34
1805 2531 1.801913 GCACACCTAGCTCACGTCG 60.802 63.158 0.00 0.00 0.00 5.12
1806 2532 1.873863 CACACCTAGCTCACGTCGA 59.126 57.895 0.00 0.00 0.00 4.20
1807 2533 0.179187 CACACCTAGCTCACGTCGAG 60.179 60.000 0.00 9.73 45.37 4.04
2605 5775 5.984233 TCAGTAAGTTTTACACTGCACAG 57.016 39.130 0.00 0.00 39.60 3.66
2609 5779 6.037172 CAGTAAGTTTTACACTGCACAGAACT 59.963 38.462 4.31 0.48 35.12 3.01
2657 5829 5.372343 TGTTGTACCATTATCTCTGCCAT 57.628 39.130 0.00 0.00 0.00 4.40
2681 5853 0.811616 GTAGTCTTGGGCCATCAGCG 60.812 60.000 7.26 0.00 45.17 5.18
2701 5873 0.180171 TTGTCATAGCCACCATCCCG 59.820 55.000 0.00 0.00 0.00 5.14
2713 5885 3.739613 ATCCCGGGGCCAAGGTTC 61.740 66.667 23.50 0.00 0.00 3.62
2756 5928 6.851222 ATCATTTTGGCTATAGTCGTTCTG 57.149 37.500 0.00 0.00 0.00 3.02
2947 6185 8.304202 TGGTTTATCAATTCAACCAAAATTCG 57.696 30.769 0.42 0.00 45.61 3.34
2954 6192 6.259608 TCAATTCAACCAAAATTCGCAACAAT 59.740 30.769 0.00 0.00 0.00 2.71
2955 6193 6.616774 ATTCAACCAAAATTCGCAACAATT 57.383 29.167 0.00 0.00 0.00 2.32
2956 6194 5.649602 TCAACCAAAATTCGCAACAATTC 57.350 34.783 0.00 0.00 0.00 2.17
2957 6195 5.355596 TCAACCAAAATTCGCAACAATTCT 58.644 33.333 0.00 0.00 0.00 2.40
3021 6262 2.691526 CAATACATTGGCCACAGCAGAT 59.308 45.455 3.88 0.00 42.56 2.90
3034 6275 2.373707 GCAGATGCCTCCACCTCCT 61.374 63.158 0.00 0.00 34.31 3.69
3074 6315 5.725110 ACACAATTCTCGATGCTAATGTC 57.275 39.130 0.00 0.00 0.00 3.06
3075 6316 5.423015 ACACAATTCTCGATGCTAATGTCT 58.577 37.500 0.00 0.00 0.00 3.41
3082 6323 5.763088 TCTCGATGCTAATGTCTGTATGAC 58.237 41.667 0.00 0.00 45.54 3.06
3086 6327 7.886338 TCGATGCTAATGTCTGTATGACTTAT 58.114 34.615 0.00 0.00 45.54 1.73
3122 6363 0.517316 GTGACCGCTGCCACTAAAAG 59.483 55.000 0.00 0.00 0.00 2.27
3126 6367 0.521735 CCGCTGCCACTAAAAGAACC 59.478 55.000 0.00 0.00 0.00 3.62
3175 6421 1.206132 CACGGGCAGTTGACCATAGTA 59.794 52.381 4.63 0.00 46.09 1.82
3183 6429 4.342378 GCAGTTGACCATAGTAGAGATGGA 59.658 45.833 8.62 0.00 45.89 3.41
3187 6433 4.745351 TGACCATAGTAGAGATGGATGCT 58.255 43.478 8.62 0.00 45.89 3.79
3209 6455 2.268076 AAGTGCACCAACGGCATCC 61.268 57.895 14.63 0.00 44.11 3.51
3320 6572 1.526575 CCTTGCATTGGCGACACCTT 61.527 55.000 0.00 0.00 45.35 3.50
3452 6707 1.899437 CGTGGAAGGCCCTAGCTTCA 61.899 60.000 0.00 0.00 39.73 3.02
3468 6723 4.064768 CATGGGGGCCAGGCAAGA 62.065 66.667 15.19 0.00 36.75 3.02
3471 6726 4.299796 GGGGGCCAGGCAAGACAA 62.300 66.667 15.19 0.00 0.00 3.18
3484 6739 3.416156 GCAAGACAAAGATGAAGAGGGT 58.584 45.455 0.00 0.00 0.00 4.34
3513 6768 1.897133 TCGCACTACTAGGGAAAAGCA 59.103 47.619 0.00 0.00 0.00 3.91
3553 6808 1.742768 GCCTATCAGTAGCGCAGGT 59.257 57.895 11.47 0.00 44.89 4.00
3578 6833 1.008767 GCTACTGGTACGGCGCTAG 60.009 63.158 6.90 4.36 39.14 3.42
3624 6879 1.553248 TCAACCCACGCTACTGCTAAT 59.447 47.619 0.00 0.00 36.97 1.73
3856 7114 4.560716 CGTGGACTAGTTTCAAGTGGATGA 60.561 45.833 0.00 0.00 0.00 2.92
3978 7242 7.437713 TGTCATATAACACCTCCTCAAGATT 57.562 36.000 0.00 0.00 0.00 2.40
4053 7321 6.577103 TCACAAGTACTCCTCATCATCAATC 58.423 40.000 0.00 0.00 0.00 2.67
4057 7325 8.200792 ACAAGTACTCCTCATCATCAATCTAAC 58.799 37.037 0.00 0.00 0.00 2.34
4058 7326 7.904558 AGTACTCCTCATCATCAATCTAACA 57.095 36.000 0.00 0.00 0.00 2.41
4059 7327 7.721402 AGTACTCCTCATCATCAATCTAACAC 58.279 38.462 0.00 0.00 0.00 3.32
4060 7328 6.550938 ACTCCTCATCATCAATCTAACACA 57.449 37.500 0.00 0.00 0.00 3.72
4061 7329 7.134362 ACTCCTCATCATCAATCTAACACAT 57.866 36.000 0.00 0.00 0.00 3.21
4180 7452 2.370189 CCCCTGACTCTCCATTATGGAC 59.630 54.545 10.29 1.15 42.67 4.02
4210 7482 7.205515 AGATTATCCTGTCTCCAATTCTTGT 57.794 36.000 0.00 0.00 0.00 3.16
4230 7502 8.149973 TCTTGTCTTTCGCTTAATGTTACTTT 57.850 30.769 0.00 0.00 0.00 2.66
4252 7524 2.554032 CAAGAACCTCCTTGCGAATGTT 59.446 45.455 0.00 0.00 37.35 2.71
4299 7574 2.292292 AGCATGTGTTCACCGGTTTTAC 59.708 45.455 2.97 3.66 0.00 2.01
4360 7649 0.031178 CAGAACTGCAAGGCAACCAC 59.969 55.000 0.00 0.00 38.41 4.16
4557 7849 2.465860 TGCACTAGTGGCACGTATTT 57.534 45.000 23.95 0.00 36.11 1.40
4658 7953 7.444183 CCTTATAAGTTAATTCGGAGCCATCAA 59.556 37.037 11.50 0.00 0.00 2.57
4663 7958 5.527582 AGTTAATTCGGAGCCATCAATGTAC 59.472 40.000 0.00 0.00 0.00 2.90
4700 7995 4.142315 CCATCTTCCGCACATTCTTTGAAT 60.142 41.667 0.00 0.00 0.00 2.57
4921 8216 5.221501 ACCATACATTTTGCAAAGTGCTTCT 60.222 36.000 28.45 15.25 45.31 2.85
4993 8288 9.970395 TTTACTTCAAAATCCATATCATGATGC 57.030 29.630 18.72 0.00 0.00 3.91
5000 8295 4.356405 TCCATATCATGATGCGTCCTTT 57.644 40.909 18.72 0.00 0.00 3.11
5043 8338 9.447157 TTCAAAATTTTCATGGTCTTCAAAACT 57.553 25.926 0.00 0.00 0.00 2.66
5058 8353 5.768980 TCAAAACTCATCCTCTCCAAGAT 57.231 39.130 0.00 0.00 0.00 2.40
5224 8522 2.119801 ATGCTGAAGTGCCGATCTTT 57.880 45.000 0.00 0.00 0.00 2.52
5243 8541 2.024176 TGTCCAGCTGAAGGAACCTA 57.976 50.000 17.39 0.00 36.80 3.08
5255 8553 0.535335 GGAACCTATCGCACAGACCA 59.465 55.000 0.00 0.00 0.00 4.02
5422 8720 3.864789 ATCCAGGCCACTCGATATTTT 57.135 42.857 5.01 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.959042 CGCCTGTTGGAATGCTCTAT 58.041 50.000 0.00 0.00 34.57 1.98
88 89 0.610174 TTCTGCTGGAGCTGTTCGAT 59.390 50.000 0.00 0.00 42.66 3.59
109 110 5.463724 CACCCAAAAATTTTTAGCGCTACAA 59.536 36.000 18.63 14.92 0.00 2.41
123 124 2.049248 CAGCGCGCACCCAAAAAT 60.049 55.556 35.10 5.73 0.00 1.82
185 186 4.969816 ACACAGTATAAATTGTGAAGCGC 58.030 39.130 16.02 0.00 43.93 5.92
200 201 1.335496 GCGCCCAAAAAGAACACAGTA 59.665 47.619 0.00 0.00 0.00 2.74
223 224 2.928301 GCTTTAGCAGAAGCCCAAAAGC 60.928 50.000 11.71 13.14 45.58 3.51
280 281 3.614588 CCCTAAAATAGTTTTAGCGCGC 58.385 45.455 26.66 26.66 46.75 6.86
476 477 2.668550 AAAGGCCGCGACAAGACC 60.669 61.111 8.23 0.00 0.00 3.85
477 478 1.228657 AAGAAAGGCCGCGACAAGAC 61.229 55.000 8.23 0.00 0.00 3.01
478 479 0.319083 TAAGAAAGGCCGCGACAAGA 59.681 50.000 8.23 0.00 0.00 3.02
479 480 0.442699 GTAAGAAAGGCCGCGACAAG 59.557 55.000 8.23 0.00 0.00 3.16
480 481 0.249953 TGTAAGAAAGGCCGCGACAA 60.250 50.000 8.23 0.00 0.00 3.18
481 482 0.249953 TTGTAAGAAAGGCCGCGACA 60.250 50.000 8.23 0.00 0.00 4.35
482 483 0.165295 GTTGTAAGAAAGGCCGCGAC 59.835 55.000 8.23 0.00 0.00 5.19
483 484 0.249953 TGTTGTAAGAAAGGCCGCGA 60.250 50.000 8.23 0.00 0.00 5.87
578 579 4.396166 ACCAAGCATCAAACATAGCAGTAC 59.604 41.667 0.00 0.00 0.00 2.73
631 633 1.802365 CCAGACGTTACGAAAAAGGGG 59.198 52.381 13.03 0.00 0.00 4.79
741 753 4.314522 AGACTGGAGAAGATCTCACTGA 57.685 45.455 9.40 0.00 45.12 3.41
843 1549 0.179111 TCTTCTGCCGTGCCTTATCG 60.179 55.000 0.00 0.00 0.00 2.92
855 1566 1.578423 GTGCTTGTGCCTCTTCTGC 59.422 57.895 0.00 0.00 38.71 4.26
1541 2267 6.448714 TGTAGGAGATAGCAGTATAGAGGGAT 59.551 42.308 0.00 0.00 0.00 3.85
1542 2268 5.791141 TGTAGGAGATAGCAGTATAGAGGGA 59.209 44.000 0.00 0.00 0.00 4.20
1543 2269 6.068461 TGTAGGAGATAGCAGTATAGAGGG 57.932 45.833 0.00 0.00 0.00 4.30
1544 2270 8.410673 TTTTGTAGGAGATAGCAGTATAGAGG 57.589 38.462 0.00 0.00 0.00 3.69
1545 2271 9.906660 CTTTTTGTAGGAGATAGCAGTATAGAG 57.093 37.037 0.00 0.00 0.00 2.43
1546 2272 9.642343 TCTTTTTGTAGGAGATAGCAGTATAGA 57.358 33.333 0.00 0.00 0.00 1.98
1549 2275 9.959721 TTTTCTTTTTGTAGGAGATAGCAGTAT 57.040 29.630 0.00 0.00 0.00 2.12
1550 2276 9.436957 CTTTTCTTTTTGTAGGAGATAGCAGTA 57.563 33.333 0.00 0.00 0.00 2.74
1551 2277 8.157476 TCTTTTCTTTTTGTAGGAGATAGCAGT 58.843 33.333 0.00 0.00 0.00 4.40
1552 2278 8.553459 TCTTTTCTTTTTGTAGGAGATAGCAG 57.447 34.615 0.00 0.00 0.00 4.24
1553 2279 8.918202 TTCTTTTCTTTTTGTAGGAGATAGCA 57.082 30.769 0.00 0.00 0.00 3.49
1560 2286 9.647797 GGTTTCTTTTCTTTTCTTTTTGTAGGA 57.352 29.630 0.00 0.00 0.00 2.94
1561 2287 8.879759 GGGTTTCTTTTCTTTTCTTTTTGTAGG 58.120 33.333 0.00 0.00 0.00 3.18
1562 2288 8.592155 CGGGTTTCTTTTCTTTTCTTTTTGTAG 58.408 33.333 0.00 0.00 0.00 2.74
1563 2289 8.305317 TCGGGTTTCTTTTCTTTTCTTTTTGTA 58.695 29.630 0.00 0.00 0.00 2.41
1564 2290 7.156000 TCGGGTTTCTTTTCTTTTCTTTTTGT 58.844 30.769 0.00 0.00 0.00 2.83
1565 2291 7.589574 TCGGGTTTCTTTTCTTTTCTTTTTG 57.410 32.000 0.00 0.00 0.00 2.44
1566 2292 8.038351 TGATCGGGTTTCTTTTCTTTTCTTTTT 58.962 29.630 0.00 0.00 0.00 1.94
1567 2293 7.552459 TGATCGGGTTTCTTTTCTTTTCTTTT 58.448 30.769 0.00 0.00 0.00 2.27
1568 2294 7.107639 TGATCGGGTTTCTTTTCTTTTCTTT 57.892 32.000 0.00 0.00 0.00 2.52
1569 2295 6.709018 TGATCGGGTTTCTTTTCTTTTCTT 57.291 33.333 0.00 0.00 0.00 2.52
1570 2296 6.546034 TCTTGATCGGGTTTCTTTTCTTTTCT 59.454 34.615 0.00 0.00 0.00 2.52
1571 2297 6.637254 GTCTTGATCGGGTTTCTTTTCTTTTC 59.363 38.462 0.00 0.00 0.00 2.29
1572 2298 6.321435 AGTCTTGATCGGGTTTCTTTTCTTTT 59.679 34.615 0.00 0.00 0.00 2.27
1573 2299 5.828328 AGTCTTGATCGGGTTTCTTTTCTTT 59.172 36.000 0.00 0.00 0.00 2.52
1574 2300 5.239525 CAGTCTTGATCGGGTTTCTTTTCTT 59.760 40.000 0.00 0.00 0.00 2.52
1575 2301 4.757149 CAGTCTTGATCGGGTTTCTTTTCT 59.243 41.667 0.00 0.00 0.00 2.52
1576 2302 4.755123 TCAGTCTTGATCGGGTTTCTTTTC 59.245 41.667 0.00 0.00 0.00 2.29
1577 2303 4.714632 TCAGTCTTGATCGGGTTTCTTTT 58.285 39.130 0.00 0.00 0.00 2.27
1578 2304 4.351874 TCAGTCTTGATCGGGTTTCTTT 57.648 40.909 0.00 0.00 0.00 2.52
1579 2305 4.065789 GTTCAGTCTTGATCGGGTTTCTT 58.934 43.478 0.00 0.00 32.27 2.52
1580 2306 3.557264 GGTTCAGTCTTGATCGGGTTTCT 60.557 47.826 0.00 0.00 32.27 2.52
1581 2307 2.742589 GGTTCAGTCTTGATCGGGTTTC 59.257 50.000 0.00 0.00 32.27 2.78
1582 2308 2.372172 AGGTTCAGTCTTGATCGGGTTT 59.628 45.455 0.00 0.00 32.27 3.27
1583 2309 1.978580 AGGTTCAGTCTTGATCGGGTT 59.021 47.619 0.00 0.00 32.27 4.11
1584 2310 1.276421 CAGGTTCAGTCTTGATCGGGT 59.724 52.381 0.00 0.00 32.27 5.28
1585 2311 2.009042 GCAGGTTCAGTCTTGATCGGG 61.009 57.143 0.00 0.00 32.27 5.14
1586 2312 1.066573 AGCAGGTTCAGTCTTGATCGG 60.067 52.381 0.00 0.00 32.27 4.18
1587 2313 2.376808 AGCAGGTTCAGTCTTGATCG 57.623 50.000 0.00 0.00 32.27 3.69
1588 2314 5.078411 TCTAAGCAGGTTCAGTCTTGATC 57.922 43.478 0.00 0.00 32.27 2.92
1589 2315 4.622695 GCTCTAAGCAGGTTCAGTCTTGAT 60.623 45.833 0.00 0.00 41.89 2.57
1590 2316 3.306364 GCTCTAAGCAGGTTCAGTCTTGA 60.306 47.826 0.00 0.00 41.89 3.02
1591 2317 2.999355 GCTCTAAGCAGGTTCAGTCTTG 59.001 50.000 0.00 0.00 41.89 3.02
1592 2318 2.027653 GGCTCTAAGCAGGTTCAGTCTT 60.028 50.000 0.86 0.00 44.75 3.01
1593 2319 1.552792 GGCTCTAAGCAGGTTCAGTCT 59.447 52.381 0.86 0.00 44.75 3.24
1594 2320 1.737363 CGGCTCTAAGCAGGTTCAGTC 60.737 57.143 0.86 0.00 44.75 3.51
1595 2321 0.247736 CGGCTCTAAGCAGGTTCAGT 59.752 55.000 0.86 0.00 44.75 3.41
1596 2322 0.247736 ACGGCTCTAAGCAGGTTCAG 59.752 55.000 4.21 0.00 44.75 3.02
1597 2323 0.685097 AACGGCTCTAAGCAGGTTCA 59.315 50.000 4.21 0.00 44.75 3.18
1598 2324 1.809684 AAACGGCTCTAAGCAGGTTC 58.190 50.000 4.21 0.00 42.52 3.62
1600 2326 0.036294 GGAAACGGCTCTAAGCAGGT 60.036 55.000 4.21 0.00 44.75 4.00
1601 2327 0.250513 AGGAAACGGCTCTAAGCAGG 59.749 55.000 4.21 0.00 44.75 4.85
1602 2328 2.815478 CTAGGAAACGGCTCTAAGCAG 58.185 52.381 0.86 0.00 44.75 4.24
1603 2329 1.134788 GCTAGGAAACGGCTCTAAGCA 60.135 52.381 0.86 0.00 44.75 3.91
1604 2330 1.137282 AGCTAGGAAACGGCTCTAAGC 59.863 52.381 0.00 0.00 39.37 3.09
1605 2331 2.815478 CAGCTAGGAAACGGCTCTAAG 58.185 52.381 0.00 0.00 41.03 2.18
1606 2332 1.134788 GCAGCTAGGAAACGGCTCTAA 60.135 52.381 0.00 0.00 41.03 2.10
1607 2333 0.460311 GCAGCTAGGAAACGGCTCTA 59.540 55.000 0.00 0.00 41.03 2.43
1608 2334 1.219393 GCAGCTAGGAAACGGCTCT 59.781 57.895 0.00 0.00 41.03 4.09
1609 2335 1.086634 CAGCAGCTAGGAAACGGCTC 61.087 60.000 0.00 0.00 41.03 4.70
1610 2336 1.078848 CAGCAGCTAGGAAACGGCT 60.079 57.895 0.00 0.00 43.03 5.52
1611 2337 0.955919 AACAGCAGCTAGGAAACGGC 60.956 55.000 0.00 0.00 0.00 5.68
1612 2338 2.380084 TAACAGCAGCTAGGAAACGG 57.620 50.000 0.00 0.00 0.00 4.44
1613 2339 4.946784 AAATAACAGCAGCTAGGAAACG 57.053 40.909 0.00 0.00 0.00 3.60
1614 2340 6.502136 AGAAAATAACAGCAGCTAGGAAAC 57.498 37.500 0.00 0.00 0.00 2.78
1615 2341 8.807948 ATAAGAAAATAACAGCAGCTAGGAAA 57.192 30.769 0.00 0.00 0.00 3.13
1616 2342 9.899661 TTATAAGAAAATAACAGCAGCTAGGAA 57.100 29.630 0.00 0.00 0.00 3.36
1617 2343 9.547753 CTTATAAGAAAATAACAGCAGCTAGGA 57.452 33.333 6.64 0.00 0.00 2.94
1618 2344 9.331282 ACTTATAAGAAAATAACAGCAGCTAGG 57.669 33.333 19.38 0.00 0.00 3.02
1622 2348 9.439537 GCTAACTTATAAGAAAATAACAGCAGC 57.560 33.333 19.38 6.53 0.00 5.25
1650 2376 3.576550 ACATGTCCTGGCCGTTTATTTTT 59.423 39.130 0.00 0.00 0.00 1.94
1651 2377 3.056891 CACATGTCCTGGCCGTTTATTTT 60.057 43.478 0.00 0.00 0.00 1.82
1652 2378 2.491693 CACATGTCCTGGCCGTTTATTT 59.508 45.455 0.00 0.00 0.00 1.40
1653 2379 2.091541 CACATGTCCTGGCCGTTTATT 58.908 47.619 0.00 0.00 0.00 1.40
1654 2380 1.750193 CACATGTCCTGGCCGTTTAT 58.250 50.000 0.00 0.00 0.00 1.40
1655 2381 0.958382 GCACATGTCCTGGCCGTTTA 60.958 55.000 0.00 0.00 0.00 2.01
1656 2382 2.268076 GCACATGTCCTGGCCGTTT 61.268 57.895 0.00 0.00 0.00 3.60
1657 2383 2.672996 GCACATGTCCTGGCCGTT 60.673 61.111 0.00 0.00 0.00 4.44
1658 2384 4.722700 GGCACATGTCCTGGCCGT 62.723 66.667 8.98 0.00 33.40 5.68
1659 2385 4.415150 AGGCACATGTCCTGGCCG 62.415 66.667 16.71 0.00 42.66 6.13
1660 2386 2.753043 CAGGCACATGTCCTGGCC 60.753 66.667 25.09 21.01 45.62 5.36
1664 2390 2.592102 AATGAACAGGCACATGTCCT 57.408 45.000 10.11 10.11 31.50 3.85
1665 2391 2.821969 AGAAATGAACAGGCACATGTCC 59.178 45.455 0.00 0.28 32.87 4.02
1666 2392 4.232221 CAAGAAATGAACAGGCACATGTC 58.768 43.478 0.00 0.00 32.68 3.06
1667 2393 3.006110 CCAAGAAATGAACAGGCACATGT 59.994 43.478 0.00 0.00 33.96 3.21
1668 2394 3.006110 ACCAAGAAATGAACAGGCACATG 59.994 43.478 0.00 0.00 0.00 3.21
1669 2395 3.233507 ACCAAGAAATGAACAGGCACAT 58.766 40.909 0.00 0.00 0.00 3.21
1670 2396 2.665165 ACCAAGAAATGAACAGGCACA 58.335 42.857 0.00 0.00 0.00 4.57
1671 2397 3.068024 TCAACCAAGAAATGAACAGGCAC 59.932 43.478 0.00 0.00 0.00 5.01
1672 2398 3.295093 TCAACCAAGAAATGAACAGGCA 58.705 40.909 0.00 0.00 0.00 4.75
1673 2399 3.858503 GCTCAACCAAGAAATGAACAGGC 60.859 47.826 0.00 0.00 0.00 4.85
1674 2400 3.571401 AGCTCAACCAAGAAATGAACAGG 59.429 43.478 0.00 0.00 0.00 4.00
1675 2401 4.276678 TCAGCTCAACCAAGAAATGAACAG 59.723 41.667 0.00 0.00 0.00 3.16
1676 2402 4.206375 TCAGCTCAACCAAGAAATGAACA 58.794 39.130 0.00 0.00 0.00 3.18
1677 2403 4.836125 TCAGCTCAACCAAGAAATGAAC 57.164 40.909 0.00 0.00 0.00 3.18
1678 2404 6.266103 AGAAATCAGCTCAACCAAGAAATGAA 59.734 34.615 0.00 0.00 0.00 2.57
1679 2405 5.771666 AGAAATCAGCTCAACCAAGAAATGA 59.228 36.000 0.00 0.00 0.00 2.57
1680 2406 6.022163 AGAAATCAGCTCAACCAAGAAATG 57.978 37.500 0.00 0.00 0.00 2.32
1681 2407 5.184671 GGAGAAATCAGCTCAACCAAGAAAT 59.815 40.000 0.00 0.00 34.07 2.17
1682 2408 4.520492 GGAGAAATCAGCTCAACCAAGAAA 59.480 41.667 0.00 0.00 34.07 2.52
1683 2409 4.074970 GGAGAAATCAGCTCAACCAAGAA 58.925 43.478 0.00 0.00 34.07 2.52
1684 2410 3.328931 AGGAGAAATCAGCTCAACCAAGA 59.671 43.478 0.00 0.00 34.07 3.02
1685 2411 3.683802 AGGAGAAATCAGCTCAACCAAG 58.316 45.455 0.00 0.00 34.07 3.61
1686 2412 3.328931 AGAGGAGAAATCAGCTCAACCAA 59.671 43.478 0.00 0.00 34.07 3.67
1687 2413 2.909006 AGAGGAGAAATCAGCTCAACCA 59.091 45.455 0.00 0.00 34.07 3.67
1688 2414 3.625649 AGAGGAGAAATCAGCTCAACC 57.374 47.619 0.00 0.00 34.07 3.77
1689 2415 5.956068 AAAAGAGGAGAAATCAGCTCAAC 57.044 39.130 0.00 0.00 34.07 3.18
1714 2440 3.005367 GGAGAAATCGGCTCAACCAAAAA 59.995 43.478 0.00 0.00 39.03 1.94
1715 2441 2.556622 GGAGAAATCGGCTCAACCAAAA 59.443 45.455 0.00 0.00 39.03 2.44
1716 2442 2.159382 GGAGAAATCGGCTCAACCAAA 58.841 47.619 0.00 0.00 39.03 3.28
1717 2443 1.351017 AGGAGAAATCGGCTCAACCAA 59.649 47.619 0.00 0.00 39.03 3.67
1718 2444 0.984230 AGGAGAAATCGGCTCAACCA 59.016 50.000 0.00 0.00 39.03 3.67
1719 2445 1.339151 ACAGGAGAAATCGGCTCAACC 60.339 52.381 0.00 0.00 34.07 3.77
1720 2446 2.100605 ACAGGAGAAATCGGCTCAAC 57.899 50.000 0.00 0.00 34.07 3.18
1721 2447 2.859165 AACAGGAGAAATCGGCTCAA 57.141 45.000 0.00 0.00 34.07 3.02
1722 2448 2.832129 ACTAACAGGAGAAATCGGCTCA 59.168 45.455 0.00 0.00 34.07 4.26
1723 2449 3.528597 ACTAACAGGAGAAATCGGCTC 57.471 47.619 0.00 0.00 0.00 4.70
1724 2450 3.983044 AACTAACAGGAGAAATCGGCT 57.017 42.857 0.00 0.00 0.00 5.52
1725 2451 4.756502 ACTAACTAACAGGAGAAATCGGC 58.243 43.478 0.00 0.00 0.00 5.54
1726 2452 6.476053 GCTAACTAACTAACAGGAGAAATCGG 59.524 42.308 0.00 0.00 0.00 4.18
1727 2453 7.221067 CAGCTAACTAACTAACAGGAGAAATCG 59.779 40.741 0.00 0.00 0.00 3.34
1728 2454 8.251721 TCAGCTAACTAACTAACAGGAGAAATC 58.748 37.037 0.00 0.00 0.00 2.17
1729 2455 8.135382 TCAGCTAACTAACTAACAGGAGAAAT 57.865 34.615 0.00 0.00 0.00 2.17
1730 2456 7.534723 TCAGCTAACTAACTAACAGGAGAAA 57.465 36.000 0.00 0.00 0.00 2.52
1731 2457 7.534723 TTCAGCTAACTAACTAACAGGAGAA 57.465 36.000 0.00 0.00 0.00 2.87
1732 2458 7.719871 ATTCAGCTAACTAACTAACAGGAGA 57.280 36.000 0.00 0.00 0.00 3.71
1733 2459 9.522804 CTTATTCAGCTAACTAACTAACAGGAG 57.477 37.037 0.00 0.00 0.00 3.69
1734 2460 9.032624 ACTTATTCAGCTAACTAACTAACAGGA 57.967 33.333 0.00 0.00 0.00 3.86
1735 2461 9.088512 CACTTATTCAGCTAACTAACTAACAGG 57.911 37.037 0.00 0.00 0.00 4.00
1736 2462 8.596380 GCACTTATTCAGCTAACTAACTAACAG 58.404 37.037 0.00 0.00 0.00 3.16
1737 2463 8.092068 TGCACTTATTCAGCTAACTAACTAACA 58.908 33.333 0.00 0.00 0.00 2.41
1738 2464 8.475331 TGCACTTATTCAGCTAACTAACTAAC 57.525 34.615 0.00 0.00 0.00 2.34
1739 2465 8.703604 CTGCACTTATTCAGCTAACTAACTAA 57.296 34.615 0.00 0.00 0.00 2.24
1751 2477 2.098607 CACCATGGCTGCACTTATTCAG 59.901 50.000 13.04 0.00 0.00 3.02
1752 2478 2.093890 CACCATGGCTGCACTTATTCA 58.906 47.619 13.04 0.00 0.00 2.57
1753 2479 2.368439 TCACCATGGCTGCACTTATTC 58.632 47.619 13.04 0.00 0.00 1.75
1754 2480 2.512692 TCACCATGGCTGCACTTATT 57.487 45.000 13.04 0.00 0.00 1.40
1755 2481 2.579873 GATCACCATGGCTGCACTTAT 58.420 47.619 13.04 0.00 0.00 1.73
1756 2482 1.743431 CGATCACCATGGCTGCACTTA 60.743 52.381 13.04 0.00 0.00 2.24
1757 2483 1.028330 CGATCACCATGGCTGCACTT 61.028 55.000 13.04 0.00 0.00 3.16
1758 2484 1.450848 CGATCACCATGGCTGCACT 60.451 57.895 13.04 0.00 0.00 4.40
1759 2485 3.104766 CGATCACCATGGCTGCAC 58.895 61.111 13.04 6.18 0.00 4.57
1760 2486 2.825387 GCGATCACCATGGCTGCA 60.825 61.111 13.04 0.00 31.23 4.41
1761 2487 3.945434 CGCGATCACCATGGCTGC 61.945 66.667 13.04 7.91 31.71 5.25
1762 2488 3.274586 CCGCGATCACCATGGCTG 61.275 66.667 13.04 9.79 31.71 4.85
1765 2491 2.823593 TTGCCGCGATCACCATGG 60.824 61.111 11.19 11.19 0.00 3.66
1766 2492 2.108514 ACTTGCCGCGATCACCATG 61.109 57.895 8.23 1.64 0.00 3.66
1767 2493 2.108514 CACTTGCCGCGATCACCAT 61.109 57.895 8.23 0.00 0.00 3.55
1768 2494 2.741985 CACTTGCCGCGATCACCA 60.742 61.111 8.23 0.00 0.00 4.17
1769 2495 4.166011 GCACTTGCCGCGATCACC 62.166 66.667 8.23 0.00 34.31 4.02
1778 2504 2.668212 TAGGTGTGCGCACTTGCC 60.668 61.111 37.59 32.53 44.65 4.52
1779 2505 2.863153 CTAGGTGTGCGCACTTGC 59.137 61.111 37.59 26.56 44.65 4.01
1780 2506 1.630244 GAGCTAGGTGTGCGCACTTG 61.630 60.000 37.59 21.18 44.65 3.16
1781 2507 1.374758 GAGCTAGGTGTGCGCACTT 60.375 57.895 37.59 23.86 44.65 3.16
1782 2508 2.262915 GAGCTAGGTGTGCGCACT 59.737 61.111 37.59 22.54 44.65 4.40
1783 2509 2.048222 TGAGCTAGGTGTGCGCAC 60.048 61.111 33.11 33.11 44.53 5.34
1784 2510 2.048222 GTGAGCTAGGTGTGCGCA 60.048 61.111 5.66 5.66 37.86 6.09
1785 2511 3.181967 CGTGAGCTAGGTGTGCGC 61.182 66.667 0.00 0.00 35.28 6.09
1786 2512 1.801913 GACGTGAGCTAGGTGTGCG 60.802 63.158 0.00 3.50 35.28 5.34
1787 2513 1.801913 CGACGTGAGCTAGGTGTGC 60.802 63.158 0.00 0.00 0.00 4.57
1788 2514 0.179187 CTCGACGTGAGCTAGGTGTG 60.179 60.000 0.00 0.00 38.03 3.82
1789 2515 2.172534 CTCGACGTGAGCTAGGTGT 58.827 57.895 0.00 0.00 38.03 4.16
1800 2526 2.415608 ATCCCACGATGCTCGACGT 61.416 57.895 11.64 0.00 43.74 4.34
1801 2527 1.946156 CATCCCACGATGCTCGACG 60.946 63.158 11.64 0.00 43.74 5.12
1802 2528 0.872021 GTCATCCCACGATGCTCGAC 60.872 60.000 11.64 0.00 44.83 4.20
1803 2529 1.319614 TGTCATCCCACGATGCTCGA 61.320 55.000 11.64 0.00 44.83 4.04
1804 2530 1.141665 TGTCATCCCACGATGCTCG 59.858 57.895 0.00 4.36 44.83 5.03
1805 2531 2.682893 GTGTCATCCCACGATGCTC 58.317 57.895 0.00 0.00 44.83 4.26
1806 2532 4.941609 GTGTCATCCCACGATGCT 57.058 55.556 0.00 0.00 44.83 3.79
1812 2538 0.892755 TACCTGTCGTGTCATCCCAC 59.107 55.000 0.00 0.00 0.00 4.61
1813 2539 1.182667 CTACCTGTCGTGTCATCCCA 58.817 55.000 0.00 0.00 0.00 4.37
1814 2540 0.460311 CCTACCTGTCGTGTCATCCC 59.540 60.000 0.00 0.00 0.00 3.85
1815 2541 0.179108 GCCTACCTGTCGTGTCATCC 60.179 60.000 0.00 0.00 0.00 3.51
1816 2542 0.818296 AGCCTACCTGTCGTGTCATC 59.182 55.000 0.00 0.00 0.00 2.92
1817 2543 0.818296 GAGCCTACCTGTCGTGTCAT 59.182 55.000 0.00 0.00 0.00 3.06
1818 2544 0.538746 TGAGCCTACCTGTCGTGTCA 60.539 55.000 0.00 0.00 0.00 3.58
2605 5775 3.388345 AACGGGAGAGAGACAAAGTTC 57.612 47.619 0.00 0.00 0.00 3.01
2609 5779 6.544564 ACAATTTTAAACGGGAGAGAGACAAA 59.455 34.615 0.00 0.00 0.00 2.83
2657 5829 2.116238 GATGGCCCAAGACTACCACTA 58.884 52.381 0.00 0.00 34.36 2.74
2666 5838 1.675310 CAACGCTGATGGCCCAAGA 60.675 57.895 0.00 0.00 37.74 3.02
2681 5853 1.680338 GGGATGGTGGCTATGACAAC 58.320 55.000 0.00 0.00 0.00 3.32
2701 5873 1.303282 CCACTAGAACCTTGGCCCC 59.697 63.158 0.00 0.00 0.00 5.80
2713 5885 6.648879 TGATTTTCTTTCAAACCCCACTAG 57.351 37.500 0.00 0.00 0.00 2.57
2795 6033 9.483489 TGTAGGAGTAGATGGTAACTGAAATAA 57.517 33.333 0.00 0.00 37.61 1.40
2937 6175 6.676237 AAAAGAATTGTTGCGAATTTTGGT 57.324 29.167 0.00 0.00 0.00 3.67
2947 6185 9.719279 TTCATGAATTTCAAAAAGAATTGTTGC 57.281 25.926 3.38 0.00 35.83 4.17
3003 6244 1.753930 CATCTGCTGTGGCCAATGTA 58.246 50.000 7.24 1.26 37.74 2.29
3034 6275 2.514803 TGTTGAGGAGAGATCGACACA 58.485 47.619 0.00 0.00 36.39 3.72
3086 6327 6.932400 AGCGGTCACCGATTTATAATTTGATA 59.068 34.615 23.90 0.00 45.97 2.15
3093 6334 2.206750 GCAGCGGTCACCGATTTATAA 58.793 47.619 23.90 0.00 45.97 0.98
3094 6335 1.539496 GGCAGCGGTCACCGATTTATA 60.539 52.381 23.90 0.00 45.97 0.98
3095 6336 0.814010 GGCAGCGGTCACCGATTTAT 60.814 55.000 23.90 0.00 45.97 1.40
3096 6337 1.448893 GGCAGCGGTCACCGATTTA 60.449 57.895 23.90 0.00 45.97 1.40
3097 6338 2.746277 GGCAGCGGTCACCGATTT 60.746 61.111 23.90 0.47 45.97 2.17
3098 6339 4.015406 TGGCAGCGGTCACCGATT 62.015 61.111 23.90 3.63 45.97 3.34
3108 6349 0.165944 CGGTTCTTTTAGTGGCAGCG 59.834 55.000 0.00 0.00 0.00 5.18
3122 6363 0.461339 ACACACACAGTCACCGGTTC 60.461 55.000 2.97 0.32 0.00 3.62
3126 6367 1.581934 AATCACACACACAGTCACCG 58.418 50.000 0.00 0.00 0.00 4.94
3175 6421 2.680221 GCACTTGACAGCATCCATCTCT 60.680 50.000 0.00 0.00 0.00 3.10
3183 6429 0.670162 GTTGGTGCACTTGACAGCAT 59.330 50.000 17.98 0.00 44.27 3.79
3187 6433 2.477176 GCCGTTGGTGCACTTGACA 61.477 57.895 17.98 2.74 0.00 3.58
3221 6467 1.202521 CGTGGCTAGTGGTATGCATCA 60.203 52.381 0.19 0.00 0.00 3.07
3224 6470 1.153449 GCGTGGCTAGTGGTATGCA 60.153 57.895 0.00 0.00 0.00 3.96
3296 6548 1.074775 TCGCCAATGCAAGGTCCTT 59.925 52.632 0.00 0.00 37.32 3.36
3452 6707 4.066139 GTCTTGCCTGGCCCCCAT 62.066 66.667 17.53 0.00 30.82 4.00
3468 6723 3.307762 GCCACTACCCTCTTCATCTTTGT 60.308 47.826 0.00 0.00 0.00 2.83
3471 6726 1.840635 GGCCACTACCCTCTTCATCTT 59.159 52.381 0.00 0.00 0.00 2.40
3484 6739 0.256752 TAGTAGTGCGAGGGCCACTA 59.743 55.000 6.18 1.13 38.85 2.74
3513 6768 3.976701 AAACCCGCGCTGCTGCTAT 62.977 57.895 14.03 0.00 36.97 2.97
3553 6808 1.509463 CGTACCAGTAGCGCTCCAA 59.491 57.895 16.34 0.00 0.00 3.53
3578 6833 3.117046 CGCTACTGCTAACCTTTAGCTC 58.883 50.000 16.71 3.39 40.95 4.09
3624 6879 4.691860 AAAGCGCTACTACTAAGTCGAA 57.308 40.909 12.05 0.00 37.15 3.71
3856 7114 4.261801 CGGATTAGTTTCAAGTGGATGGT 58.738 43.478 0.00 0.00 0.00 3.55
3996 7260 6.179756 AGTGACCAATTTGCTATGTGATGTA 58.820 36.000 0.00 0.00 0.00 2.29
4210 7482 8.373048 TCTTGAAAGTAACATTAAGCGAAAGA 57.627 30.769 0.00 0.00 0.00 2.52
4230 7502 2.224523 ACATTCGCAAGGAGGTTCTTGA 60.225 45.455 1.90 0.00 35.45 3.02
4299 7574 1.012086 CGGATCTCACCTGTGCATTG 58.988 55.000 0.00 0.00 0.00 2.82
4419 7708 7.521509 ACATCATTGCTAACTACGAAGTTAC 57.478 36.000 0.00 0.00 44.26 2.50
4658 7953 4.986054 TGGTAGACAAAACCCAGTACAT 57.014 40.909 0.00 0.00 36.06 2.29
4663 7958 4.010349 GGAAGATGGTAGACAAAACCCAG 58.990 47.826 0.00 0.00 36.06 4.45
4874 8169 7.339212 TGGTTTTTATGAGGGTATGATTGTCAG 59.661 37.037 0.00 0.00 0.00 3.51
4993 8288 5.827666 ACAAAGAAAATACACCAAAGGACG 58.172 37.500 0.00 0.00 0.00 4.79
5043 8338 6.501237 AGATGCTATATCTTGGAGAGGATGA 58.499 40.000 0.00 0.00 0.00 2.92
5058 8353 3.086282 CCATGCCATGCAAGATGCTATA 58.914 45.455 0.00 0.00 45.31 1.31
5157 8455 3.141038 GGTACGCAACGACGACAC 58.859 61.111 0.00 0.00 36.70 3.67
5214 8512 0.674581 CAGCTGGACAAAGATCGGCA 60.675 55.000 5.57 0.00 0.00 5.69
5224 8522 2.024176 TAGGTTCCTTCAGCTGGACA 57.976 50.000 15.13 0.00 32.65 4.02
5243 8541 1.226688 CGATCGTGGTCTGTGCGAT 60.227 57.895 7.03 0.00 46.25 4.58
5395 8693 1.339055 CGAGTGGCCTGGATTTTCTCA 60.339 52.381 3.32 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.