Multiple sequence alignment - TraesCS4A01G488400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G488400 chr4A 100.000 6310 0 0 1 6310 740064559 740058250 0.000000e+00 11653.0
1 TraesCS4A01G488400 chr4A 94.816 5131 186 30 195 5256 739830194 739835313 0.000000e+00 7928.0
2 TraesCS4A01G488400 chr4A 94.509 5081 187 28 195 5256 733930153 733925146 0.000000e+00 7753.0
3 TraesCS4A01G488400 chr4A 96.036 4541 137 22 621 5125 742272359 742267826 0.000000e+00 7348.0
4 TraesCS4A01G488400 chr4A 94.044 2384 132 6 2881 5256 740868120 740865739 0.000000e+00 3607.0
5 TraesCS4A01G488400 chr4A 93.703 2382 140 6 2881 5254 739808218 739810597 0.000000e+00 3559.0
6 TraesCS4A01G488400 chr4A 90.883 1031 91 1 1288 2318 739806203 739807230 0.000000e+00 1380.0
7 TraesCS4A01G488400 chr4A 94.466 253 13 1 219 470 742272635 742272383 7.670000e-104 388.0
8 TraesCS4A01G488400 chr4A 92.913 127 4 1 1 127 742272783 742272662 5.030000e-41 180.0
9 TraesCS4A01G488400 chr4A 93.913 115 6 1 5475 5588 740661127 740661241 8.410000e-39 172.0
10 TraesCS4A01G488400 chr4A 95.918 98 4 0 1 98 733930273 733930176 6.550000e-35 159.0
11 TraesCS4A01G488400 chr4A 80.889 225 22 6 5260 5465 741883504 741883282 2.350000e-34 158.0
12 TraesCS4A01G488400 chr4A 79.602 201 19 10 5996 6176 740863433 740863235 2.390000e-24 124.0
13 TraesCS4A01G488400 chr4A 91.667 72 6 0 5474 5545 741883227 741883156 4.030000e-17 100.0
14 TraesCS4A01G488400 chr4A 91.667 72 4 1 5475 5546 742267157 742267088 1.450000e-16 99.0
15 TraesCS4A01G488400 chr4A 94.545 55 2 1 5493 5546 740864821 740864767 4.050000e-12 84.2
16 TraesCS4A01G488400 chr4A 97.619 42 0 1 5548 5588 741882769 741882728 3.160000e-08 71.3
17 TraesCS4A01G488400 chr7D 93.875 2302 133 6 2881 5176 3440478 3442777 0.000000e+00 3463.0
18 TraesCS4A01G488400 chr7D 92.574 2424 160 12 2841 5254 3699324 3701737 0.000000e+00 3461.0
19 TraesCS4A01G488400 chr7D 90.661 1285 67 19 2673 3928 3583121 3584381 0.000000e+00 1659.0
20 TraesCS4A01G488400 chr7D 89.277 1203 110 11 1258 2450 3731300 3730107 0.000000e+00 1489.0
21 TraesCS4A01G488400 chr7D 90.517 1044 93 4 1280 2321 3438496 3439535 0.000000e+00 1375.0
22 TraesCS4A01G488400 chr7D 87.237 619 52 13 2071 2675 3582468 3583073 0.000000e+00 680.0
23 TraesCS4A01G488400 chr7D 81.567 217 22 3 5260 5459 3701811 3702026 5.060000e-36 163.0
24 TraesCS4A01G488400 chr7D 92.241 116 8 1 5474 5588 3702087 3702202 5.060000e-36 163.0
25 TraesCS4A01G488400 chr7D 87.234 141 14 2 2485 2625 3730101 3729965 2.350000e-34 158.0
26 TraesCS4A01G488400 chr7D 90.411 73 7 0 5474 5546 3726793 3726721 5.210000e-16 97.1
27 TraesCS4A01G488400 chr7D 87.324 71 4 2 5476 5546 2432628 2432693 6.780000e-10 76.8
28 TraesCS4A01G488400 chr7A 90.610 2428 210 14 2840 5254 3582923 3585345 0.000000e+00 3205.0
29 TraesCS4A01G488400 chr7A 89.089 2438 218 26 2857 5256 3381200 3383627 0.000000e+00 2985.0
30 TraesCS4A01G488400 chr7A 89.829 1170 105 9 1258 2421 2554244 2553083 0.000000e+00 1489.0
31 TraesCS4A01G488400 chr7A 91.368 1031 86 1 1288 2318 3004360 3003333 0.000000e+00 1408.0
32 TraesCS4A01G488400 chr7A 89.658 1112 96 7 1222 2326 3379537 3380636 0.000000e+00 1399.0
33 TraesCS4A01G488400 chr7A 88.722 133 14 1 5260 5392 3585421 3585552 1.820000e-35 161.0
34 TraesCS4A01G488400 chr7A 92.079 101 8 0 5474 5574 3585698 3585798 6.590000e-30 143.0
35 TraesCS4A01G488400 chr7A 79.286 140 16 7 5920 6059 2547565 2547439 1.130000e-12 86.1
36 TraesCS4A01G488400 chr7A 90.476 63 6 0 5398 5460 3384606 3384668 4.050000e-12 84.2
37 TraesCS4A01G488400 chr7A 100.000 29 0 0 732 760 3360123 3360151 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G488400 chr4A 740058250 740064559 6309 True 11653.000000 11653 100.000000 1 6310 1 chr4A.!!$R1 6309
1 TraesCS4A01G488400 chr4A 739830194 739835313 5119 False 7928.000000 7928 94.816000 195 5256 1 chr4A.!!$F1 5061
2 TraesCS4A01G488400 chr4A 733925146 733930273 5127 True 3956.000000 7753 95.213500 1 5256 2 chr4A.!!$R2 5255
3 TraesCS4A01G488400 chr4A 739806203 739810597 4394 False 2469.500000 3559 92.293000 1288 5254 2 chr4A.!!$F3 3966
4 TraesCS4A01G488400 chr4A 742267088 742272783 5695 True 2003.750000 7348 93.770500 1 5546 4 chr4A.!!$R5 5545
5 TraesCS4A01G488400 chr4A 740863235 740868120 4885 True 1271.733333 3607 89.397000 2881 6176 3 chr4A.!!$R3 3295
6 TraesCS4A01G488400 chr7D 3438496 3442777 4281 False 2419.000000 3463 92.196000 1280 5176 2 chr7D.!!$F2 3896
7 TraesCS4A01G488400 chr7D 3699324 3702202 2878 False 1262.333333 3461 88.794000 2841 5588 3 chr7D.!!$F4 2747
8 TraesCS4A01G488400 chr7D 3582468 3584381 1913 False 1169.500000 1659 88.949000 2071 3928 2 chr7D.!!$F3 1857
9 TraesCS4A01G488400 chr7D 3726721 3731300 4579 True 581.366667 1489 88.974000 1258 5546 3 chr7D.!!$R1 4288
10 TraesCS4A01G488400 chr7A 3379537 3384668 5131 False 1489.400000 2985 89.741000 1222 5460 3 chr7A.!!$F2 4238
11 TraesCS4A01G488400 chr7A 2553083 2554244 1161 True 1489.000000 1489 89.829000 1258 2421 1 chr7A.!!$R2 1163
12 TraesCS4A01G488400 chr7A 3003333 3004360 1027 True 1408.000000 1408 91.368000 1288 2318 1 chr7A.!!$R3 1030
13 TraesCS4A01G488400 chr7A 3582923 3585798 2875 False 1169.666667 3205 90.470333 2840 5574 3 chr7A.!!$F3 2734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 627 1.302033 GAGACTGTGGTGGGTGCTG 60.302 63.158 0.00 0.00 0.00 4.41 F
1350 1416 1.203313 TCTCTCCTAGGCAAGTTGGGT 60.203 52.381 2.96 0.00 0.00 4.51 F
1638 1722 2.915659 TGGACGTTCTGGCCTCGT 60.916 61.111 3.32 9.92 40.49 4.18 F
2421 2667 2.811431 TCGTTTACCACAGCCATTTCAG 59.189 45.455 0.00 0.00 0.00 3.02 F
2828 3383 3.633065 ACGTATAAGGCTCTCTTGGACTC 59.367 47.826 0.00 0.00 36.93 3.36 F
3102 4031 6.073003 GCATACAGTTAATGCCCTAAGTGATC 60.073 42.308 13.78 0.00 43.17 2.92 F
4708 5645 1.956477 ACACTCAATGCAACCAAGGAC 59.044 47.619 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 1722 0.684535 TCTTGGAGGCAATGTCACGA 59.315 50.000 0.00 0.0 0.00 4.35 R
2401 2647 2.811431 TCTGAAATGGCTGTGGTAAACG 59.189 45.455 0.00 0.0 0.00 3.60 R
3034 3963 2.832661 AGCAAGCCGCACCAACAA 60.833 55.556 0.00 0.0 46.13 2.83 R
3687 4619 0.603569 AGGGCGTATATCTTCCTGCG 59.396 55.000 0.00 0.0 0.00 5.18 R
3772 4705 1.138069 TCTTCGCTTGACTTGGACACA 59.862 47.619 0.00 0.0 0.00 3.72 R
4885 5822 1.000385 TCAAAGGCTTCAAACCGCATG 60.000 47.619 0.00 0.0 0.00 4.06 R
5620 8033 0.033796 TCCGGACGGAGGAAGTACAT 60.034 55.000 9.76 0.0 39.76 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 3.509575 TGCCAAGTTGACAAGAAAACTGT 59.490 39.130 3.87 0.00 36.75 3.55
88 89 9.221775 GTTGACAAGAAAACTGTAAACTATGTG 57.778 33.333 0.00 0.00 35.87 3.21
93 94 9.599322 CAAGAAAACTGTAAACTATGTGATGTC 57.401 33.333 0.00 0.00 0.00 3.06
94 95 9.561069 AAGAAAACTGTAAACTATGTGATGTCT 57.439 29.630 0.00 0.00 0.00 3.41
117 118 8.198109 GTCTAGACTAGAATTGCCTGAACATTA 58.802 37.037 15.91 0.00 36.40 1.90
131 132 8.970020 TGCCTGAACATTAATTTCATAAGATGT 58.030 29.630 11.14 0.00 32.57 3.06
142 143 8.954950 AATTTCATAAGATGTGAGACCTACAG 57.045 34.615 0.00 0.00 0.00 2.74
143 144 6.471233 TTCATAAGATGTGAGACCTACAGG 57.529 41.667 0.00 0.00 42.17 4.00
144 145 4.895889 TCATAAGATGTGAGACCTACAGGG 59.104 45.833 0.00 0.00 40.27 4.45
159 160 6.496338 CCTACAGGGTGTACAAGAAAATTC 57.504 41.667 0.00 0.00 0.00 2.17
160 161 5.121768 CCTACAGGGTGTACAAGAAAATTCG 59.878 44.000 0.00 0.00 0.00 3.34
161 162 4.710324 ACAGGGTGTACAAGAAAATTCGA 58.290 39.130 0.00 0.00 0.00 3.71
162 163 5.127491 ACAGGGTGTACAAGAAAATTCGAA 58.873 37.500 0.00 0.00 0.00 3.71
163 164 5.591067 ACAGGGTGTACAAGAAAATTCGAAA 59.409 36.000 0.00 0.00 0.00 3.46
164 165 5.912955 CAGGGTGTACAAGAAAATTCGAAAC 59.087 40.000 0.00 0.00 0.00 2.78
165 166 5.826208 AGGGTGTACAAGAAAATTCGAAACT 59.174 36.000 0.00 0.00 0.00 2.66
166 167 6.993902 AGGGTGTACAAGAAAATTCGAAACTA 59.006 34.615 0.00 0.00 0.00 2.24
167 168 7.041576 AGGGTGTACAAGAAAATTCGAAACTAC 60.042 37.037 0.00 0.00 0.00 2.73
168 169 7.254863 GGGTGTACAAGAAAATTCGAAACTACA 60.255 37.037 0.00 0.00 0.00 2.74
169 170 7.797123 GGTGTACAAGAAAATTCGAAACTACAG 59.203 37.037 0.00 0.00 0.00 2.74
170 171 7.797123 GTGTACAAGAAAATTCGAAACTACAGG 59.203 37.037 0.00 0.00 0.00 4.00
171 172 6.313744 ACAAGAAAATTCGAAACTACAGGG 57.686 37.500 0.00 0.00 0.00 4.45
172 173 5.826208 ACAAGAAAATTCGAAACTACAGGGT 59.174 36.000 0.00 0.00 0.00 4.34
173 174 5.941948 AGAAAATTCGAAACTACAGGGTG 57.058 39.130 0.00 0.00 0.00 4.61
174 175 5.374071 AGAAAATTCGAAACTACAGGGTGT 58.626 37.500 0.00 0.00 0.00 4.16
175 176 6.527423 AGAAAATTCGAAACTACAGGGTGTA 58.473 36.000 0.00 0.00 0.00 2.90
176 177 6.426025 AGAAAATTCGAAACTACAGGGTGTAC 59.574 38.462 0.00 0.00 0.00 2.90
177 178 5.479124 AATTCGAAACTACAGGGTGTACT 57.521 39.130 0.00 0.00 0.00 2.73
178 179 3.928727 TCGAAACTACAGGGTGTACTG 57.071 47.619 0.00 0.00 44.03 2.74
188 189 4.442375 CAGGGTGTACTGTCTAGAGTTG 57.558 50.000 0.00 0.00 33.81 3.16
189 190 3.827302 CAGGGTGTACTGTCTAGAGTTGT 59.173 47.826 0.00 0.00 33.81 3.32
190 191 4.080687 AGGGTGTACTGTCTAGAGTTGTC 58.919 47.826 0.00 0.00 0.00 3.18
191 192 4.080687 GGGTGTACTGTCTAGAGTTGTCT 58.919 47.826 0.00 0.00 36.75 3.41
192 193 4.082679 GGGTGTACTGTCTAGAGTTGTCTG 60.083 50.000 0.00 0.00 33.84 3.51
193 194 4.760715 GGTGTACTGTCTAGAGTTGTCTGA 59.239 45.833 0.00 0.00 33.84 3.27
201 202 7.770897 ACTGTCTAGAGTTGTCTGAACATTTTT 59.229 33.333 0.00 0.00 34.73 1.94
353 354 9.950496 ATGTTGTCTATCAGTGAGTAAATTTCT 57.050 29.630 0.00 0.00 0.00 2.52
380 381 6.096705 CCTGAGTACAAATTGCCATATTTCCA 59.903 38.462 0.00 0.00 0.00 3.53
390 392 5.718801 TGCCATATTTCCAAAGGTAGGTA 57.281 39.130 0.00 0.00 0.00 3.08
493 509 8.973378 GTTATAGATAGATTGACAACTGCTGAC 58.027 37.037 0.00 0.00 0.00 3.51
543 559 6.525976 GTCTATGCTTGATTTGAACTTTCTGC 59.474 38.462 0.00 0.00 0.00 4.26
595 627 1.302033 GAGACTGTGGTGGGTGCTG 60.302 63.158 0.00 0.00 0.00 4.41
624 656 7.472334 AGCAACCATGAAAATAGAGTTTGAT 57.528 32.000 0.00 0.00 0.00 2.57
638 670 2.159282 AGTTTGATAGGAGTACACCGCG 60.159 50.000 0.00 0.00 34.73 6.46
724 756 2.042464 AGACTCTTCAGTGACCAGCAA 58.958 47.619 0.00 0.00 30.63 3.91
730 762 4.569943 TCTTCAGTGACCAGCAACTTATC 58.430 43.478 0.00 0.00 0.00 1.75
731 763 4.284490 TCTTCAGTGACCAGCAACTTATCT 59.716 41.667 0.00 0.00 0.00 1.98
788 820 5.163195 ACTCCATTTTCTGTTGTCTGGTAGT 60.163 40.000 0.00 0.00 0.00 2.73
810 842 1.786937 TTTGTTCCACTTGCCATGGT 58.213 45.000 14.67 0.00 38.47 3.55
834 866 6.620877 AGTTGATCTTGACAACCTACCATA 57.379 37.500 0.00 0.00 45.70 2.74
840 872 5.565509 TCTTGACAACCTACCATAATTGCA 58.434 37.500 0.00 0.00 0.00 4.08
844 876 3.447229 ACAACCTACCATAATTGCAAGCC 59.553 43.478 4.94 0.00 0.00 4.35
1085 1143 4.036380 CGTATAGTTTCTTTGATTGGGGCC 59.964 45.833 0.00 0.00 0.00 5.80
1097 1155 4.554683 TGATTGGGGCCAATTGATATTCA 58.445 39.130 7.12 0.00 45.50 2.57
1135 1193 5.299148 TGATTTGATTGTGGAGCCTTTTTG 58.701 37.500 0.00 0.00 0.00 2.44
1350 1416 1.203313 TCTCTCCTAGGCAAGTTGGGT 60.203 52.381 2.96 0.00 0.00 4.51
1388 1472 4.498520 CACTCTGATCCGCGGCGT 62.499 66.667 23.51 12.10 0.00 5.68
1389 1473 4.194720 ACTCTGATCCGCGGCGTC 62.195 66.667 23.51 21.06 0.00 5.19
1390 1474 4.933064 CTCTGATCCGCGGCGTCC 62.933 72.222 23.51 9.62 0.00 4.79
1638 1722 2.915659 TGGACGTTCTGGCCTCGT 60.916 61.111 3.32 9.92 40.49 4.18
1928 2012 3.055963 TCATTGATTGGATTTGGTGGTGC 60.056 43.478 0.00 0.00 0.00 5.01
2401 2647 6.314784 AGTAAAGCTGCGATAAAATTGTGTC 58.685 36.000 0.00 0.00 0.00 3.67
2421 2667 2.811431 TCGTTTACCACAGCCATTTCAG 59.189 45.455 0.00 0.00 0.00 3.02
2422 2668 2.811431 CGTTTACCACAGCCATTTCAGA 59.189 45.455 0.00 0.00 0.00 3.27
2503 2871 7.490657 TCTAACTAGTGGAGCCTTGATAAAA 57.509 36.000 0.00 0.00 0.00 1.52
2695 3249 7.820872 ACGTAGCAGGTAACATACTAAAATTGT 59.179 33.333 0.00 0.00 41.41 2.71
2700 3254 8.395633 GCAGGTAACATACTAAAATTGTACCTG 58.604 37.037 18.04 18.04 41.61 4.00
2828 3383 3.633065 ACGTATAAGGCTCTCTTGGACTC 59.367 47.826 0.00 0.00 36.93 3.36
2904 3805 9.567848 GTTTCTTCTCACTTGTATTTTGTTTCA 57.432 29.630 0.00 0.00 0.00 2.69
3102 4031 6.073003 GCATACAGTTAATGCCCTAAGTGATC 60.073 42.308 13.78 0.00 43.17 2.92
3687 4619 7.959651 CAGAAACATACTTCAATCAGCTTGTAC 59.040 37.037 0.00 0.00 36.20 2.90
3751 4684 8.086522 GGGAAGGTAAAATCCTTTAAAGTTCAC 58.913 37.037 14.03 5.40 46.38 3.18
3761 4694 7.504924 TCCTTTAAAGTTCACGACATGATTT 57.495 32.000 14.03 0.00 37.11 2.17
3772 4705 9.950680 GTTCACGACATGATTTTGGAATATATT 57.049 29.630 0.00 0.00 37.11 1.28
4442 5376 2.111384 GCTCCTCCATTGAGTACCTCA 58.889 52.381 0.00 0.00 38.87 3.86
4708 5645 1.956477 ACACTCAATGCAACCAAGGAC 59.044 47.619 0.00 0.00 0.00 3.85
4885 5822 2.021355 CAGCACTGGAGAGGATTGAC 57.979 55.000 0.00 0.00 0.00 3.18
4930 5867 4.202223 GGGATTTACGGCATTGAGACTCTA 60.202 45.833 3.68 0.00 0.00 2.43
5090 6028 6.927936 CGAGTGAAGAGATTGGAATATGTCAT 59.072 38.462 0.00 0.00 0.00 3.06
5108 6046 5.301555 TGTCATATTGTCTTTCGGTTGACA 58.698 37.500 0.00 0.00 39.71 3.58
5167 6109 3.940852 ACTATTGCATCAAATCTGCGTCA 59.059 39.130 0.00 0.00 42.62 4.35
5197 6144 2.776536 AGGGCTAAATCAGACTGCATCT 59.223 45.455 0.00 0.00 38.66 2.90
5249 6196 5.221641 TGTGGTACTGCTAAATCTGTCACTT 60.222 40.000 0.00 0.00 0.00 3.16
5256 6203 8.485976 ACTGCTAAATCTGTCACTTATTCTTC 57.514 34.615 0.00 0.00 0.00 2.87
5257 6204 8.097038 ACTGCTAAATCTGTCACTTATTCTTCA 58.903 33.333 0.00 0.00 0.00 3.02
5259 6206 9.453572 TGCTAAATCTGTCACTTATTCTTCAAT 57.546 29.630 0.00 0.00 0.00 2.57
5265 6212 8.908786 TCTGTCACTTATTCTTCAATTCTTGT 57.091 30.769 0.00 0.00 0.00 3.16
5275 6616 5.300752 TCTTCAATTCTTGTCTGAGACCAC 58.699 41.667 10.52 0.00 0.00 4.16
5290 6631 2.563179 AGACCACACTGTAGCCAACTAG 59.437 50.000 0.00 0.00 0.00 2.57
5356 6751 7.394359 AGCATACAACTTTGGATATTGACAACT 59.606 33.333 0.00 0.00 28.50 3.16
5422 6836 5.163673 TGGAAGTTTTTGAAATTTTGGCTGC 60.164 36.000 0.00 0.00 0.00 5.25
5423 6837 5.163673 GGAAGTTTTTGAAATTTTGGCTGCA 60.164 36.000 0.50 0.00 0.00 4.41
5460 6875 1.428869 AGGTTTCAGACAGCTCAGGT 58.571 50.000 0.00 0.00 0.00 4.00
5463 6878 2.485479 GGTTTCAGACAGCTCAGGTGAA 60.485 50.000 11.79 0.00 34.87 3.18
5464 6879 3.206150 GTTTCAGACAGCTCAGGTGAAA 58.794 45.455 11.79 0.00 35.34 2.69
5466 6881 3.777106 TCAGACAGCTCAGGTGAAAAT 57.223 42.857 11.79 0.00 34.87 1.82
5467 6882 3.405831 TCAGACAGCTCAGGTGAAAATG 58.594 45.455 11.79 3.65 34.87 2.32
5468 6883 3.071457 TCAGACAGCTCAGGTGAAAATGA 59.929 43.478 11.79 5.97 34.87 2.57
5469 6884 3.817084 CAGACAGCTCAGGTGAAAATGAA 59.183 43.478 11.79 0.00 34.87 2.57
5470 6885 4.276678 CAGACAGCTCAGGTGAAAATGAAA 59.723 41.667 11.79 0.00 34.87 2.69
5472 6887 5.048224 AGACAGCTCAGGTGAAAATGAAATG 60.048 40.000 11.79 0.00 34.87 2.32
5499 7262 1.002366 CTGACGGAGCGAAAGAATGG 58.998 55.000 0.00 0.00 0.00 3.16
5584 7997 4.599041 TGATTTGGGGTATGGTTTCAGAG 58.401 43.478 0.00 0.00 0.00 3.35
5586 7999 4.946160 TTTGGGGTATGGTTTCAGAGAT 57.054 40.909 0.00 0.00 0.00 2.75
5587 8000 6.159575 TGATTTGGGGTATGGTTTCAGAGATA 59.840 38.462 0.00 0.00 0.00 1.98
5589 8002 3.386726 TGGGGTATGGTTTCAGAGATACG 59.613 47.826 0.00 0.00 0.00 3.06
5590 8003 3.387050 GGGGTATGGTTTCAGAGATACGT 59.613 47.826 0.00 0.00 0.00 3.57
5591 8004 4.586001 GGGGTATGGTTTCAGAGATACGTA 59.414 45.833 0.00 0.00 0.00 3.57
5592 8005 5.069516 GGGGTATGGTTTCAGAGATACGTAA 59.930 44.000 0.00 0.00 0.00 3.18
5593 8006 6.239515 GGGGTATGGTTTCAGAGATACGTAAT 60.240 42.308 0.00 0.00 0.00 1.89
5594 8007 6.645415 GGGTATGGTTTCAGAGATACGTAATG 59.355 42.308 0.00 0.00 0.00 1.90
5595 8008 6.145696 GGTATGGTTTCAGAGATACGTAATGC 59.854 42.308 0.00 0.00 0.00 3.56
5596 8009 5.079689 TGGTTTCAGAGATACGTAATGCA 57.920 39.130 0.00 0.00 0.00 3.96
5597 8010 4.868171 TGGTTTCAGAGATACGTAATGCAC 59.132 41.667 0.00 0.00 0.00 4.57
5598 8011 4.868171 GGTTTCAGAGATACGTAATGCACA 59.132 41.667 0.00 0.00 0.00 4.57
5599 8012 5.523916 GGTTTCAGAGATACGTAATGCACAT 59.476 40.000 0.00 0.00 0.00 3.21
5600 8013 6.292381 GGTTTCAGAGATACGTAATGCACATC 60.292 42.308 0.00 0.00 0.00 3.06
5602 8015 4.274950 TCAGAGATACGTAATGCACATCGA 59.725 41.667 0.00 0.00 0.00 3.59
5604 8017 5.631096 CAGAGATACGTAATGCACATCGATT 59.369 40.000 0.00 0.00 0.00 3.34
5606 8019 7.326063 CAGAGATACGTAATGCACATCGATTTA 59.674 37.037 0.00 0.00 0.00 1.40
5608 8021 9.285770 GAGATACGTAATGCACATCGATTTATA 57.714 33.333 0.00 0.00 0.00 0.98
5609 8022 9.073368 AGATACGTAATGCACATCGATTTATAC 57.927 33.333 0.00 0.00 0.00 1.47
5611 8024 7.652300 ACGTAATGCACATCGATTTATACAT 57.348 32.000 11.99 0.00 0.00 2.29
5612 8025 7.729836 ACGTAATGCACATCGATTTATACATC 58.270 34.615 11.99 0.00 0.00 3.06
5613 8026 7.383843 ACGTAATGCACATCGATTTATACATCA 59.616 33.333 11.99 0.00 0.00 3.07
5614 8027 8.220434 CGTAATGCACATCGATTTATACATCAA 58.780 33.333 0.00 0.00 0.00 2.57
5619 8032 9.050601 TGCACATCGATTTATACATCAATTACA 57.949 29.630 0.00 0.00 0.00 2.41
5620 8033 9.877137 GCACATCGATTTATACATCAATTACAA 57.123 29.630 0.00 0.00 0.00 2.41
5633 8046 6.538742 ACATCAATTACAATGTACTTCCTCCG 59.461 38.462 0.00 0.00 34.42 4.63
5634 8047 6.045072 TCAATTACAATGTACTTCCTCCGT 57.955 37.500 0.00 0.00 0.00 4.69
5635 8048 6.103997 TCAATTACAATGTACTTCCTCCGTC 58.896 40.000 0.00 0.00 0.00 4.79
5636 8049 4.460948 TTACAATGTACTTCCTCCGTCC 57.539 45.455 0.00 0.00 0.00 4.79
5637 8050 1.203994 ACAATGTACTTCCTCCGTCCG 59.796 52.381 0.00 0.00 0.00 4.79
5638 8051 0.822164 AATGTACTTCCTCCGTCCGG 59.178 55.000 0.00 0.00 0.00 5.14
5650 8063 2.443416 TCCGTCCGGAGATATATGTGG 58.557 52.381 3.06 0.00 39.76 4.17
5651 8064 2.040679 TCCGTCCGGAGATATATGTGGA 59.959 50.000 3.06 0.00 39.76 4.02
5652 8065 3.024547 CCGTCCGGAGATATATGTGGAT 58.975 50.000 3.06 0.00 37.50 3.41
5655 8068 5.221067 CCGTCCGGAGATATATGTGGATAAG 60.221 48.000 3.06 0.00 37.50 1.73
5656 8069 5.589050 CGTCCGGAGATATATGTGGATAAGA 59.411 44.000 3.06 0.00 0.00 2.10
5657 8070 6.095021 CGTCCGGAGATATATGTGGATAAGAA 59.905 42.308 3.06 0.00 0.00 2.52
5658 8071 7.362660 CGTCCGGAGATATATGTGGATAAGAAA 60.363 40.741 3.06 0.00 0.00 2.52
5659 8072 8.478877 GTCCGGAGATATATGTGGATAAGAAAT 58.521 37.037 3.06 0.00 0.00 2.17
5661 8074 9.973450 CCGGAGATATATGTGGATAAGAAATAG 57.027 37.037 0.00 0.00 0.00 1.73
5671 8084 9.753674 ATGTGGATAAGAAATAGAAACCTTGAA 57.246 29.630 0.00 0.00 0.00 2.69
5672 8085 9.010029 TGTGGATAAGAAATAGAAACCTTGAAC 57.990 33.333 0.00 0.00 0.00 3.18
5673 8086 9.010029 GTGGATAAGAAATAGAAACCTTGAACA 57.990 33.333 0.00 0.00 0.00 3.18
5675 8088 9.010029 GGATAAGAAATAGAAACCTTGAACACA 57.990 33.333 0.00 0.00 0.00 3.72
5677 8090 6.319141 AGAAATAGAAACCTTGAACACAGC 57.681 37.500 0.00 0.00 0.00 4.40
5680 8093 5.948992 ATAGAAACCTTGAACACAGCTTC 57.051 39.130 0.00 0.00 0.00 3.86
5683 8096 5.376625 AGAAACCTTGAACACAGCTTCATA 58.623 37.500 0.00 0.00 30.19 2.15
5684 8097 5.827797 AGAAACCTTGAACACAGCTTCATAA 59.172 36.000 0.00 0.00 30.19 1.90
5685 8098 6.491403 AGAAACCTTGAACACAGCTTCATAAT 59.509 34.615 0.00 0.00 30.19 1.28
5686 8099 7.665559 AGAAACCTTGAACACAGCTTCATAATA 59.334 33.333 0.00 0.00 30.19 0.98
5687 8100 7.944729 AACCTTGAACACAGCTTCATAATAT 57.055 32.000 0.00 0.00 30.19 1.28
5688 8101 9.461312 AAACCTTGAACACAGCTTCATAATATA 57.539 29.630 0.00 0.00 30.19 0.86
5689 8102 9.632638 AACCTTGAACACAGCTTCATAATATAT 57.367 29.630 0.00 0.00 30.19 0.86
5690 8103 9.277783 ACCTTGAACACAGCTTCATAATATATC 57.722 33.333 0.00 0.00 30.19 1.63
5693 8106 9.612066 TTGAACACAGCTTCATAATATATCACA 57.388 29.630 0.00 0.00 30.19 3.58
5694 8107 9.045223 TGAACACAGCTTCATAATATATCACAC 57.955 33.333 0.00 0.00 0.00 3.82
5697 8110 7.658982 ACACAGCTTCATAATATATCACACCAG 59.341 37.037 0.00 0.00 0.00 4.00
5698 8111 7.658982 CACAGCTTCATAATATATCACACCAGT 59.341 37.037 0.00 0.00 0.00 4.00
5699 8112 8.870116 ACAGCTTCATAATATATCACACCAGTA 58.130 33.333 0.00 0.00 0.00 2.74
5700 8113 9.881649 CAGCTTCATAATATATCACACCAGTAT 57.118 33.333 0.00 0.00 0.00 2.12
5729 8142 8.785184 ATATAGTATAGTAATCAAGGGAGGCC 57.215 38.462 0.00 0.00 0.00 5.19
5730 8143 5.094569 AGTATAGTAATCAAGGGAGGCCT 57.905 43.478 3.86 3.86 0.00 5.19
5731 8144 5.088026 AGTATAGTAATCAAGGGAGGCCTC 58.912 45.833 25.59 25.59 0.00 4.70
5733 8146 2.122768 AGTAATCAAGGGAGGCCTCTG 58.877 52.381 31.36 21.82 0.00 3.35
5734 8147 1.141858 GTAATCAAGGGAGGCCTCTGG 59.858 57.143 31.36 17.89 0.00 3.86
5749 8162 3.091545 CCTCTGGCAAGGCTTAAATCAA 58.908 45.455 0.00 0.00 0.00 2.57
5750 8163 3.511146 CCTCTGGCAAGGCTTAAATCAAA 59.489 43.478 0.00 0.00 0.00 2.69
5751 8164 4.021192 CCTCTGGCAAGGCTTAAATCAAAA 60.021 41.667 0.00 0.00 0.00 2.44
5752 8165 4.881920 TCTGGCAAGGCTTAAATCAAAAC 58.118 39.130 0.00 0.00 0.00 2.43
5754 8167 5.070313 TCTGGCAAGGCTTAAATCAAAACTT 59.930 36.000 0.00 0.00 0.00 2.66
5755 8168 6.266558 TCTGGCAAGGCTTAAATCAAAACTTA 59.733 34.615 0.00 0.00 0.00 2.24
5757 8170 7.096551 TGGCAAGGCTTAAATCAAAACTTATC 58.903 34.615 0.00 0.00 0.00 1.75
5758 8171 6.253512 GGCAAGGCTTAAATCAAAACTTATCG 59.746 38.462 0.00 0.00 0.00 2.92
5762 8175 8.965986 AGGCTTAAATCAAAACTTATCGTTTC 57.034 30.769 0.00 0.00 44.77 2.78
5763 8176 8.573035 AGGCTTAAATCAAAACTTATCGTTTCA 58.427 29.630 0.00 0.00 44.77 2.69
5764 8177 9.187455 GGCTTAAATCAAAACTTATCGTTTCAA 57.813 29.630 0.00 0.00 44.77 2.69
5768 8181 7.492614 AATCAAAACTTATCGTTTCAATCGC 57.507 32.000 0.00 0.00 44.77 4.58
5769 8182 5.991568 TCAAAACTTATCGTTTCAATCGCA 58.008 33.333 0.00 0.00 44.77 5.10
5770 8183 6.607689 TCAAAACTTATCGTTTCAATCGCAT 58.392 32.000 0.00 0.00 44.77 4.73
5771 8184 6.740905 TCAAAACTTATCGTTTCAATCGCATC 59.259 34.615 0.00 0.00 44.77 3.91
5773 8186 5.395325 ACTTATCGTTTCAATCGCATCTG 57.605 39.130 0.00 0.00 0.00 2.90
5775 8188 0.726827 TCGTTTCAATCGCATCTGCC 59.273 50.000 0.00 0.00 37.91 4.85
5776 8189 0.248215 CGTTTCAATCGCATCTGCCC 60.248 55.000 0.00 0.00 37.91 5.36
5777 8190 1.098050 GTTTCAATCGCATCTGCCCT 58.902 50.000 0.00 0.00 37.91 5.19
5778 8191 1.474077 GTTTCAATCGCATCTGCCCTT 59.526 47.619 0.00 0.00 37.91 3.95
5779 8192 1.838112 TTCAATCGCATCTGCCCTTT 58.162 45.000 0.00 0.00 37.91 3.11
5780 8193 1.382522 TCAATCGCATCTGCCCTTTC 58.617 50.000 0.00 0.00 37.91 2.62
5781 8194 0.383231 CAATCGCATCTGCCCTTTCC 59.617 55.000 0.00 0.00 37.91 3.13
5783 8196 0.465097 ATCGCATCTGCCCTTTCCTG 60.465 55.000 0.00 0.00 37.91 3.86
5784 8197 2.117156 CGCATCTGCCCTTTCCTGG 61.117 63.158 0.00 0.00 37.91 4.45
5785 8198 1.304282 GCATCTGCCCTTTCCTGGA 59.696 57.895 0.00 0.00 34.31 3.86
5787 8200 0.750911 CATCTGCCCTTTCCTGGAGC 60.751 60.000 0.00 0.00 0.00 4.70
5788 8201 0.918310 ATCTGCCCTTTCCTGGAGCT 60.918 55.000 7.12 0.00 0.00 4.09
5789 8202 1.077858 CTGCCCTTTCCTGGAGCTC 60.078 63.158 4.71 4.71 0.00 4.09
5790 8203 1.539869 TGCCCTTTCCTGGAGCTCT 60.540 57.895 14.64 0.00 0.00 4.09
5791 8204 1.077858 GCCCTTTCCTGGAGCTCTG 60.078 63.158 14.64 6.98 0.00 3.35
5794 8207 1.563410 CCCTTTCCTGGAGCTCTGAAT 59.437 52.381 14.64 0.00 0.00 2.57
5795 8208 2.774234 CCCTTTCCTGGAGCTCTGAATA 59.226 50.000 14.64 5.22 0.00 1.75
5797 8210 4.141298 CCCTTTCCTGGAGCTCTGAATAAT 60.141 45.833 14.64 0.00 0.00 1.28
5799 8212 6.240118 CCCTTTCCTGGAGCTCTGAATAATAT 60.240 42.308 14.64 0.00 0.00 1.28
5800 8213 6.878389 CCTTTCCTGGAGCTCTGAATAATATC 59.122 42.308 14.64 0.00 0.00 1.63
5801 8214 7.256619 CCTTTCCTGGAGCTCTGAATAATATCT 60.257 40.741 14.64 0.00 0.00 1.98
5802 8215 6.849085 TCCTGGAGCTCTGAATAATATCTC 57.151 41.667 14.64 0.00 0.00 2.75
5803 8216 5.719085 TCCTGGAGCTCTGAATAATATCTCC 59.281 44.000 14.64 0.00 39.14 3.71
5804 8217 5.483231 CCTGGAGCTCTGAATAATATCTCCA 59.517 44.000 14.64 7.70 44.26 3.86
5806 8219 5.046735 TGGAGCTCTGAATAATATCTCCAGC 60.047 44.000 14.64 0.00 42.37 4.85
5807 8220 5.187576 GGAGCTCTGAATAATATCTCCAGCT 59.812 44.000 14.64 0.00 38.69 4.24
5808 8221 6.379703 GGAGCTCTGAATAATATCTCCAGCTA 59.620 42.308 14.64 0.00 38.69 3.32
5809 8222 7.169158 AGCTCTGAATAATATCTCCAGCTAC 57.831 40.000 0.00 0.00 32.95 3.58
5810 8223 6.953520 AGCTCTGAATAATATCTCCAGCTACT 59.046 38.462 0.00 0.00 32.95 2.57
5811 8224 7.035004 GCTCTGAATAATATCTCCAGCTACTG 58.965 42.308 0.00 0.00 0.00 2.74
5812 8225 6.929625 TCTGAATAATATCTCCAGCTACTGC 58.070 40.000 0.00 0.00 40.05 4.40
5813 8226 6.494835 TCTGAATAATATCTCCAGCTACTGCA 59.505 38.462 0.00 0.00 42.74 4.41
5814 8227 7.179872 TCTGAATAATATCTCCAGCTACTGCAT 59.820 37.037 0.00 0.00 42.74 3.96
5815 8228 7.683578 TGAATAATATCTCCAGCTACTGCATT 58.316 34.615 0.00 0.00 42.74 3.56
5816 8229 7.821359 TGAATAATATCTCCAGCTACTGCATTC 59.179 37.037 0.00 0.00 42.74 2.67
5817 8230 5.557576 AATATCTCCAGCTACTGCATTCA 57.442 39.130 0.00 0.00 42.74 2.57
5818 8231 3.920231 ATCTCCAGCTACTGCATTCAA 57.080 42.857 0.00 0.00 42.74 2.69
5820 8233 2.093288 TCTCCAGCTACTGCATTCAAGG 60.093 50.000 0.00 0.00 42.74 3.61
5821 8234 1.065199 TCCAGCTACTGCATTCAAGGG 60.065 52.381 0.00 0.00 42.74 3.95
5822 8235 1.386533 CAGCTACTGCATTCAAGGGG 58.613 55.000 0.00 0.00 42.74 4.79
5824 8237 1.211457 AGCTACTGCATTCAAGGGGAG 59.789 52.381 0.00 0.00 42.74 4.30
5833 8473 4.101448 CAAGGGGAGCCTGACGGG 62.101 72.222 0.00 0.00 38.36 5.28
5854 8494 2.659610 GTTGAGCTCGCCCAGTCT 59.340 61.111 9.64 0.00 0.00 3.24
5855 8495 1.004440 GTTGAGCTCGCCCAGTCTT 60.004 57.895 9.64 0.00 0.00 3.01
5856 8496 0.603975 GTTGAGCTCGCCCAGTCTTT 60.604 55.000 9.64 0.00 0.00 2.52
5877 8569 2.422231 CCTCCTCCGTCTCCAGCAG 61.422 68.421 0.00 0.00 0.00 4.24
5926 8618 1.738099 CGACTTGGCCTCGTCCTTG 60.738 63.158 16.11 2.86 0.00 3.61
5927 8619 2.032681 ACTTGGCCTCGTCCTTGC 59.967 61.111 3.32 0.00 0.00 4.01
5928 8620 2.747855 CTTGGCCTCGTCCTTGCC 60.748 66.667 3.32 0.00 45.56 4.52
5988 8680 3.127533 GCAGGAGAACGCGGCAAT 61.128 61.111 12.47 0.00 0.00 3.56
5989 8681 1.813753 GCAGGAGAACGCGGCAATA 60.814 57.895 12.47 0.00 0.00 1.90
5990 8682 1.766143 GCAGGAGAACGCGGCAATAG 61.766 60.000 12.47 0.00 0.00 1.73
5991 8683 1.521681 AGGAGAACGCGGCAATAGC 60.522 57.895 12.47 0.00 41.10 2.97
6076 8784 4.097361 GGCGGGGGAAGTCTCCAC 62.097 72.222 0.00 0.00 45.57 4.02
6093 8801 2.189521 CGGGAGTTTCGATGGGGG 59.810 66.667 0.00 0.00 0.00 5.40
6094 8802 2.363975 CGGGAGTTTCGATGGGGGA 61.364 63.158 0.00 0.00 0.00 4.81
6095 8803 1.223763 GGGAGTTTCGATGGGGGAC 59.776 63.158 0.00 0.00 0.00 4.46
6096 8804 1.559065 GGGAGTTTCGATGGGGGACA 61.559 60.000 0.00 0.00 0.00 4.02
6097 8805 0.107654 GGAGTTTCGATGGGGGACAG 60.108 60.000 0.00 0.00 0.00 3.51
6098 8806 0.107654 GAGTTTCGATGGGGGACAGG 60.108 60.000 0.00 0.00 0.00 4.00
6099 8807 1.749258 GTTTCGATGGGGGACAGGC 60.749 63.158 0.00 0.00 0.00 4.85
6153 8863 2.286654 GCAGCACCGCATATTCTTCTTC 60.287 50.000 0.00 0.00 0.00 2.87
6155 8865 3.624861 CAGCACCGCATATTCTTCTTCTT 59.375 43.478 0.00 0.00 0.00 2.52
6161 8871 7.702348 GCACCGCATATTCTTCTTCTTTTTAAT 59.298 33.333 0.00 0.00 0.00 1.40
6162 8872 9.573133 CACCGCATATTCTTCTTCTTTTTAATT 57.427 29.630 0.00 0.00 0.00 1.40
6223 8933 9.508642 TTTTTGGGGGTAAATTCAACAAATATC 57.491 29.630 0.00 0.00 0.00 1.63
6224 8934 7.798710 TTGGGGGTAAATTCAACAAATATCA 57.201 32.000 0.00 0.00 0.00 2.15
6225 8935 7.176589 TGGGGGTAAATTCAACAAATATCAC 57.823 36.000 0.00 0.00 0.00 3.06
6226 8936 6.127591 TGGGGGTAAATTCAACAAATATCACG 60.128 38.462 0.00 0.00 0.00 4.35
6227 8937 6.127563 GGGGGTAAATTCAACAAATATCACGT 60.128 38.462 0.00 0.00 0.00 4.49
6228 8938 6.750039 GGGGTAAATTCAACAAATATCACGTG 59.250 38.462 9.94 9.94 0.00 4.49
6229 8939 7.309920 GGGTAAATTCAACAAATATCACGTGT 58.690 34.615 16.51 5.66 0.00 4.49
6230 8940 7.810759 GGGTAAATTCAACAAATATCACGTGTT 59.189 33.333 16.51 10.15 35.91 3.32
6231 8941 9.187455 GGTAAATTCAACAAATATCACGTGTTT 57.813 29.630 16.51 6.11 33.27 2.83
6233 8943 8.864069 AAATTCAACAAATATCACGTGTTTCA 57.136 26.923 16.51 0.00 33.27 2.69
6234 8944 8.864069 AATTCAACAAATATCACGTGTTTCAA 57.136 26.923 16.51 0.00 33.27 2.69
6235 8945 8.864069 ATTCAACAAATATCACGTGTTTCAAA 57.136 26.923 16.51 0.00 33.27 2.69
6236 8946 8.689251 TTCAACAAATATCACGTGTTTCAAAA 57.311 26.923 16.51 0.00 33.27 2.44
6237 8947 8.334016 TCAACAAATATCACGTGTTTCAAAAG 57.666 30.769 16.51 3.06 33.27 2.27
6238 8948 7.971168 TCAACAAATATCACGTGTTTCAAAAGT 59.029 29.630 16.51 3.68 33.27 2.66
6239 8949 9.227490 CAACAAATATCACGTGTTTCAAAAGTA 57.773 29.630 16.51 0.00 33.27 2.24
6240 8950 9.445786 AACAAATATCACGTGTTTCAAAAGTAG 57.554 29.630 16.51 0.00 31.52 2.57
6241 8951 8.832521 ACAAATATCACGTGTTTCAAAAGTAGA 58.167 29.630 16.51 0.00 0.00 2.59
6242 8952 9.658475 CAAATATCACGTGTTTCAAAAGTAGAA 57.342 29.630 16.51 0.00 0.00 2.10
6244 8954 9.825972 AATATCACGTGTTTCAAAAGTAGAATG 57.174 29.630 16.51 0.00 0.00 2.67
6245 8955 6.671614 TCACGTGTTTCAAAAGTAGAATGT 57.328 33.333 16.51 0.00 0.00 2.71
6246 8956 6.711579 TCACGTGTTTCAAAAGTAGAATGTC 58.288 36.000 16.51 0.00 0.00 3.06
6247 8957 5.907391 CACGTGTTTCAAAAGTAGAATGTCC 59.093 40.000 7.58 0.00 0.00 4.02
6248 8958 5.587043 ACGTGTTTCAAAAGTAGAATGTCCA 59.413 36.000 0.00 0.00 0.00 4.02
6249 8959 6.262273 ACGTGTTTCAAAAGTAGAATGTCCAT 59.738 34.615 0.00 0.00 0.00 3.41
6250 8960 6.578545 CGTGTTTCAAAAGTAGAATGTCCATG 59.421 38.462 0.00 0.00 0.00 3.66
6251 8961 7.425606 GTGTTTCAAAAGTAGAATGTCCATGT 58.574 34.615 0.00 0.00 0.00 3.21
6252 8962 7.379529 GTGTTTCAAAAGTAGAATGTCCATGTG 59.620 37.037 0.00 0.00 0.00 3.21
6253 8963 7.068103 TGTTTCAAAAGTAGAATGTCCATGTGT 59.932 33.333 0.00 0.00 0.00 3.72
6254 8964 7.581213 TTCAAAAGTAGAATGTCCATGTGTT 57.419 32.000 0.00 0.00 0.00 3.32
6255 8965 7.581213 TCAAAAGTAGAATGTCCATGTGTTT 57.419 32.000 0.00 0.00 0.00 2.83
6256 8966 7.648142 TCAAAAGTAGAATGTCCATGTGTTTC 58.352 34.615 0.00 0.00 0.00 2.78
6257 8967 7.284261 TCAAAAGTAGAATGTCCATGTGTTTCA 59.716 33.333 0.00 0.00 0.00 2.69
6258 8968 7.581213 AAAGTAGAATGTCCATGTGTTTCAA 57.419 32.000 0.00 0.00 0.00 2.69
6259 8969 7.581213 AAGTAGAATGTCCATGTGTTTCAAA 57.419 32.000 0.00 0.00 0.00 2.69
6260 8970 7.581213 AGTAGAATGTCCATGTGTTTCAAAA 57.419 32.000 0.00 0.00 0.00 2.44
6261 8971 7.651808 AGTAGAATGTCCATGTGTTTCAAAAG 58.348 34.615 0.00 0.00 0.00 2.27
6262 8972 5.846203 AGAATGTCCATGTGTTTCAAAAGG 58.154 37.500 0.00 0.00 0.00 3.11
6263 8973 5.363580 AGAATGTCCATGTGTTTCAAAAGGT 59.636 36.000 0.00 0.00 0.00 3.50
6264 8974 6.549364 AGAATGTCCATGTGTTTCAAAAGGTA 59.451 34.615 0.00 0.00 0.00 3.08
6265 8975 6.916360 ATGTCCATGTGTTTCAAAAGGTAT 57.084 33.333 0.00 0.00 0.00 2.73
6266 8976 6.723298 TGTCCATGTGTTTCAAAAGGTATT 57.277 33.333 0.00 0.00 0.00 1.89
6267 8977 6.744112 TGTCCATGTGTTTCAAAAGGTATTC 58.256 36.000 0.00 0.00 0.00 1.75
6268 8978 6.322456 TGTCCATGTGTTTCAAAAGGTATTCA 59.678 34.615 0.00 0.00 0.00 2.57
6269 8979 7.015098 TGTCCATGTGTTTCAAAAGGTATTCAT 59.985 33.333 0.00 0.00 0.00 2.57
6270 8980 7.329226 GTCCATGTGTTTCAAAAGGTATTCATG 59.671 37.037 0.00 0.00 0.00 3.07
6271 8981 7.232330 TCCATGTGTTTCAAAAGGTATTCATGA 59.768 33.333 0.00 0.00 33.28 3.07
6272 8982 7.871973 CCATGTGTTTCAAAAGGTATTCATGAA 59.128 33.333 11.26 11.26 33.28 2.57
6273 8983 9.426837 CATGTGTTTCAAAAGGTATTCATGAAT 57.573 29.630 23.75 23.75 33.28 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 6.398234 TCAGGCAATTCTAGTCTAGACATC 57.602 41.667 24.44 0.00 33.84 3.06
93 94 8.948631 TTAATGTTCAGGCAATTCTAGTCTAG 57.051 34.615 0.00 0.00 0.00 2.43
94 95 9.905713 AATTAATGTTCAGGCAATTCTAGTCTA 57.094 29.630 0.00 0.00 0.00 2.59
95 96 8.814038 AATTAATGTTCAGGCAATTCTAGTCT 57.186 30.769 0.00 0.00 0.00 3.24
96 97 9.508567 GAAATTAATGTTCAGGCAATTCTAGTC 57.491 33.333 0.00 0.00 0.00 2.59
97 98 9.023962 TGAAATTAATGTTCAGGCAATTCTAGT 57.976 29.630 8.21 0.00 31.45 2.57
117 118 7.989741 CCTGTAGGTCTCACATCTTATGAAATT 59.010 37.037 0.00 0.00 0.00 1.82
139 140 4.710324 TCGAATTTTCTTGTACACCCTGT 58.290 39.130 0.00 0.00 0.00 4.00
140 141 5.682943 TTCGAATTTTCTTGTACACCCTG 57.317 39.130 0.00 0.00 0.00 4.45
142 143 6.068473 AGTTTCGAATTTTCTTGTACACCC 57.932 37.500 0.00 0.00 0.00 4.61
143 144 7.632721 TGTAGTTTCGAATTTTCTTGTACACC 58.367 34.615 0.00 0.00 0.00 4.16
144 145 7.797123 CCTGTAGTTTCGAATTTTCTTGTACAC 59.203 37.037 0.00 0.00 0.00 2.90
146 147 7.041576 ACCCTGTAGTTTCGAATTTTCTTGTAC 60.042 37.037 0.00 0.00 0.00 2.90
147 148 6.993902 ACCCTGTAGTTTCGAATTTTCTTGTA 59.006 34.615 0.00 0.00 0.00 2.41
148 149 5.826208 ACCCTGTAGTTTCGAATTTTCTTGT 59.174 36.000 0.00 0.00 0.00 3.16
151 152 5.374071 ACACCCTGTAGTTTCGAATTTTCT 58.626 37.500 0.00 0.00 0.00 2.52
152 153 5.684550 ACACCCTGTAGTTTCGAATTTTC 57.315 39.130 0.00 0.00 0.00 2.29
153 154 6.204108 CAGTACACCCTGTAGTTTCGAATTTT 59.796 38.462 0.00 0.00 34.48 1.82
154 155 5.699458 CAGTACACCCTGTAGTTTCGAATTT 59.301 40.000 0.00 0.00 34.48 1.82
155 156 5.221581 ACAGTACACCCTGTAGTTTCGAATT 60.222 40.000 0.00 0.00 43.71 2.17
156 157 4.282703 ACAGTACACCCTGTAGTTTCGAAT 59.717 41.667 0.00 0.00 43.71 3.34
157 158 3.638160 ACAGTACACCCTGTAGTTTCGAA 59.362 43.478 0.00 0.00 43.71 3.71
158 159 3.225104 ACAGTACACCCTGTAGTTTCGA 58.775 45.455 0.00 0.00 43.71 3.71
159 160 3.255149 AGACAGTACACCCTGTAGTTTCG 59.745 47.826 0.00 0.00 45.46 3.46
160 161 4.868314 AGACAGTACACCCTGTAGTTTC 57.132 45.455 0.00 0.00 45.46 2.78
161 162 5.638133 TCTAGACAGTACACCCTGTAGTTT 58.362 41.667 0.00 0.00 45.46 2.66
162 163 5.222089 ACTCTAGACAGTACACCCTGTAGTT 60.222 44.000 0.00 0.00 45.46 2.24
163 164 4.289148 ACTCTAGACAGTACACCCTGTAGT 59.711 45.833 0.00 0.00 45.46 2.73
164 165 4.846040 ACTCTAGACAGTACACCCTGTAG 58.154 47.826 0.00 0.00 45.46 2.74
165 166 4.923516 ACTCTAGACAGTACACCCTGTA 57.076 45.455 0.00 0.00 45.46 2.74
167 168 3.827302 ACAACTCTAGACAGTACACCCTG 59.173 47.826 0.00 0.00 38.45 4.45
168 169 4.080687 GACAACTCTAGACAGTACACCCT 58.919 47.826 0.00 0.00 0.00 4.34
169 170 4.080687 AGACAACTCTAGACAGTACACCC 58.919 47.826 0.00 0.00 0.00 4.61
170 171 4.760715 TCAGACAACTCTAGACAGTACACC 59.239 45.833 0.00 0.00 0.00 4.16
171 172 5.943706 TCAGACAACTCTAGACAGTACAC 57.056 43.478 0.00 0.00 0.00 2.90
172 173 5.826208 TGTTCAGACAACTCTAGACAGTACA 59.174 40.000 0.00 0.00 31.49 2.90
173 174 6.315091 TGTTCAGACAACTCTAGACAGTAC 57.685 41.667 0.00 0.00 31.49 2.73
174 175 7.526142 AATGTTCAGACAACTCTAGACAGTA 57.474 36.000 0.00 0.00 39.66 2.74
175 176 6.412362 AATGTTCAGACAACTCTAGACAGT 57.588 37.500 0.00 0.00 39.66 3.55
176 177 7.721286 AAAATGTTCAGACAACTCTAGACAG 57.279 36.000 0.00 0.00 39.66 3.51
201 202 6.316890 ACCACTAGACTAAAACGAAAAGCAAA 59.683 34.615 0.00 0.00 0.00 3.68
215 216 8.005388 AGATCTGGCTAATTAACCACTAGACTA 58.995 37.037 3.37 0.00 0.00 2.59
217 218 7.056844 AGATCTGGCTAATTAACCACTAGAC 57.943 40.000 3.37 0.00 0.00 2.59
221 222 6.567602 AGAAGATCTGGCTAATTAACCACT 57.432 37.500 3.37 0.00 0.00 4.00
310 311 8.181904 AGACAACATGTGGAAATTTACTCATT 57.818 30.769 14.00 1.89 0.00 2.57
311 312 7.765695 AGACAACATGTGGAAATTTACTCAT 57.234 32.000 7.39 11.40 0.00 2.90
331 332 9.256228 AGGTAGAAATTTACTCACTGATAGACA 57.744 33.333 0.00 0.00 0.00 3.41
353 354 7.284489 GGAAATATGGCAATTTGTACTCAGGTA 59.716 37.037 10.82 0.00 0.00 3.08
380 381 4.108287 TCCCCAACCAAATTACCTACCTTT 59.892 41.667 0.00 0.00 0.00 3.11
390 392 4.219725 CACTAAATCGTCCCCAACCAAATT 59.780 41.667 0.00 0.00 0.00 1.82
493 509 2.009774 CTAACTTCCATTGCCACCTCG 58.990 52.381 0.00 0.00 0.00 4.63
543 559 2.409870 GCAAAGGATGAGTGGGCCG 61.410 63.158 0.00 0.00 0.00 6.13
581 613 2.033141 CCTCAGCACCCACCACAG 59.967 66.667 0.00 0.00 0.00 3.66
595 627 5.649831 ACTCTATTTTCATGGTTGCTTCCTC 59.350 40.000 0.00 0.00 0.00 3.71
624 656 2.044650 AGGCGCGGTGTACTCCTA 60.045 61.111 8.83 0.00 0.00 2.94
638 670 4.357279 AGGCAGGTGGAAGCAGGC 62.357 66.667 0.00 0.00 46.56 4.85
692 724 2.036475 TGAAGAGTCTTGAGCAGTCACC 59.964 50.000 10.90 0.00 30.10 4.02
724 756 4.074970 CCTGCAAACTGGACAAGATAAGT 58.925 43.478 0.00 0.00 37.06 2.24
730 762 0.031178 GCACCTGCAAACTGGACAAG 59.969 55.000 0.00 0.00 41.59 3.16
731 763 1.391157 GGCACCTGCAAACTGGACAA 61.391 55.000 0.00 0.00 44.36 3.18
810 842 6.620877 ATGGTAGGTTGTCAAGATCAACTA 57.379 37.500 0.00 0.00 42.97 2.24
834 866 4.122046 GAGTGAAAAACAGGCTTGCAATT 58.878 39.130 0.00 0.00 0.00 2.32
840 872 9.696917 CTAATTAATTGAGTGAAAAACAGGCTT 57.303 29.630 11.05 0.00 0.00 4.35
844 876 9.683069 AGTGCTAATTAATTGAGTGAAAAACAG 57.317 29.630 11.05 0.00 0.00 3.16
880 912 8.720562 CATGGGATTTTCCAATTTGTACTTTTC 58.279 33.333 0.00 0.00 40.62 2.29
951 983 5.964758 TGATATGAAAACCAACAATGCCTC 58.035 37.500 0.00 0.00 0.00 4.70
1388 1472 2.049767 TACTGGATGTCGCTGCGGA 61.050 57.895 23.03 9.71 0.00 5.54
1389 1473 1.878522 GTACTGGATGTCGCTGCGG 60.879 63.158 23.03 6.43 0.00 5.69
1390 1474 0.528466 ATGTACTGGATGTCGCTGCG 60.528 55.000 17.25 17.25 0.00 5.18
1391 1475 1.212616 GATGTACTGGATGTCGCTGC 58.787 55.000 0.00 0.00 0.00 5.25
1392 1476 2.467838 CTGATGTACTGGATGTCGCTG 58.532 52.381 0.00 0.00 0.00 5.18
1393 1477 1.202463 GCTGATGTACTGGATGTCGCT 60.202 52.381 0.00 0.00 0.00 4.93
1394 1478 1.212616 GCTGATGTACTGGATGTCGC 58.787 55.000 0.00 0.00 0.00 5.19
1395 1479 1.065551 TCGCTGATGTACTGGATGTCG 59.934 52.381 0.00 0.00 0.00 4.35
1396 1480 2.871182 TCGCTGATGTACTGGATGTC 57.129 50.000 0.00 0.00 0.00 3.06
1462 1546 1.153449 GGCGATCGTGGTCATCCAA 60.153 57.895 17.81 0.00 46.15 3.53
1638 1722 0.684535 TCTTGGAGGCAATGTCACGA 59.315 50.000 0.00 0.00 0.00 4.35
1770 1854 3.244078 CCAAATGCTCAGCAATGCCATAT 60.244 43.478 1.73 0.00 43.62 1.78
1928 2012 1.595093 GGCAATGGTGGTCTTTCCCG 61.595 60.000 0.00 0.00 34.77 5.14
2401 2647 2.811431 TCTGAAATGGCTGTGGTAAACG 59.189 45.455 0.00 0.00 0.00 3.60
2665 3163 7.585286 TTAGTATGTTACCTGCTACGTTTTG 57.415 36.000 0.00 0.00 0.00 2.44
3034 3963 2.832661 AGCAAGCCGCACCAACAA 60.833 55.556 0.00 0.00 46.13 2.83
3426 4358 5.453567 AATGACTTGCAAACTTTACTCCC 57.546 39.130 0.00 0.00 0.00 4.30
3687 4619 0.603569 AGGGCGTATATCTTCCTGCG 59.396 55.000 0.00 0.00 0.00 5.18
3751 4684 9.385902 GACACAATATATTCCAAAATCATGTCG 57.614 33.333 0.00 0.00 0.00 4.35
3761 4694 7.148086 GCTTGACTTGGACACAATATATTCCAA 60.148 37.037 13.53 13.53 44.21 3.53
3772 4705 1.138069 TCTTCGCTTGACTTGGACACA 59.862 47.619 0.00 0.00 0.00 3.72
4708 5645 4.524714 AGAATGTCCACTATGTCCCTATCG 59.475 45.833 0.00 0.00 0.00 2.92
4885 5822 1.000385 TCAAAGGCTTCAAACCGCATG 60.000 47.619 0.00 0.00 0.00 4.06
5090 6028 7.731882 TTTGTATGTCAACCGAAAGACAATA 57.268 32.000 7.64 0.95 46.62 1.90
5135 6077 4.558226 TGATGCAATAGTCTCCACTTGT 57.442 40.909 0.00 0.00 33.62 3.16
5136 6078 5.885230 TTTGATGCAATAGTCTCCACTTG 57.115 39.130 0.00 0.00 33.62 3.16
5148 6090 2.159338 GGTGACGCAGATTTGATGCAAT 60.159 45.455 0.00 0.00 44.05 3.56
5151 6093 1.089920 AGGTGACGCAGATTTGATGC 58.910 50.000 0.00 0.00 40.35 3.91
5167 6109 3.846588 TCTGATTTAGCCCTCAAGAAGGT 59.153 43.478 0.00 0.00 44.56 3.50
5257 6204 4.141620 ACAGTGTGGTCTCAGACAAGAATT 60.142 41.667 7.24 0.00 39.36 2.17
5259 6206 2.766263 ACAGTGTGGTCTCAGACAAGAA 59.234 45.455 7.24 0.00 39.36 2.52
5261 6208 2.898729 ACAGTGTGGTCTCAGACAAG 57.101 50.000 7.24 0.00 39.36 3.16
5264 6211 1.067495 GGCTACAGTGTGGTCTCAGAC 60.067 57.143 5.88 0.00 37.43 3.51
5265 6212 1.257743 GGCTACAGTGTGGTCTCAGA 58.742 55.000 5.88 0.00 0.00 3.27
5290 6631 2.611225 TCCAAACACAAAACATGCCC 57.389 45.000 0.00 0.00 0.00 5.36
5318 6659 8.702438 CCAAAGTTGTATGCTTGACTAAAAATG 58.298 33.333 0.00 0.00 0.00 2.32
5329 6670 7.701539 TGTCAATATCCAAAGTTGTATGCTT 57.298 32.000 0.00 0.00 0.00 3.91
5375 6771 8.038944 TCCACTGGTATGTTTGATACTTTCTAC 58.961 37.037 0.00 0.00 0.00 2.59
5384 6780 6.976934 AAAACTTCCACTGGTATGTTTGAT 57.023 33.333 12.82 1.86 0.00 2.57
5422 6836 8.303156 TGAAACCTTACATTTTGGATGTATGTG 58.697 33.333 0.00 1.48 34.83 3.21
5423 6837 8.415950 TGAAACCTTACATTTTGGATGTATGT 57.584 30.769 0.24 0.00 34.83 2.29
5460 6875 3.191162 CAGCCGAGACCATTTCATTTTCA 59.809 43.478 0.00 0.00 0.00 2.69
5463 6878 2.749621 GTCAGCCGAGACCATTTCATTT 59.250 45.455 0.00 0.00 32.36 2.32
5464 6879 2.359900 GTCAGCCGAGACCATTTCATT 58.640 47.619 0.00 0.00 32.36 2.57
5466 6881 0.389817 CGTCAGCCGAGACCATTTCA 60.390 55.000 0.00 0.00 39.56 2.69
5467 6882 1.084370 CCGTCAGCCGAGACCATTTC 61.084 60.000 0.00 0.00 39.56 2.17
5468 6883 1.079127 CCGTCAGCCGAGACCATTT 60.079 57.895 0.00 0.00 39.56 2.32
5469 6884 1.949847 CTCCGTCAGCCGAGACCATT 61.950 60.000 0.00 0.00 39.56 3.16
5470 6885 2.362503 TCCGTCAGCCGAGACCAT 60.363 61.111 0.00 0.00 39.56 3.55
5472 6887 4.500116 GCTCCGTCAGCCGAGACC 62.500 72.222 0.00 0.00 43.17 3.85
5499 7262 5.032863 GCAGATCATATTGACACTTTGCAC 58.967 41.667 0.00 0.00 0.00 4.57
5584 7997 8.856247 TGTATAAATCGATGTGCATTACGTATC 58.144 33.333 0.00 0.00 0.00 2.24
5586 7999 8.751302 ATGTATAAATCGATGTGCATTACGTA 57.249 30.769 0.00 0.00 0.00 3.57
5587 8000 7.383843 TGATGTATAAATCGATGTGCATTACGT 59.616 33.333 0.00 0.00 0.00 3.57
5593 8006 9.050601 TGTAATTGATGTATAAATCGATGTGCA 57.949 29.630 6.42 0.00 32.08 4.57
5594 8007 9.877137 TTGTAATTGATGTATAAATCGATGTGC 57.123 29.630 6.42 2.10 32.08 4.57
5606 8019 9.561069 GGAGGAAGTACATTGTAATTGATGTAT 57.439 33.333 13.71 0.00 39.94 2.29
5608 8021 6.538742 CGGAGGAAGTACATTGTAATTGATGT 59.461 38.462 13.71 8.39 39.62 3.06
5609 8022 6.538742 ACGGAGGAAGTACATTGTAATTGATG 59.461 38.462 13.71 3.02 0.00 3.07
5611 8024 6.045072 ACGGAGGAAGTACATTGTAATTGA 57.955 37.500 13.71 0.00 0.00 2.57
5612 8025 5.293569 GGACGGAGGAAGTACATTGTAATTG 59.706 44.000 13.71 2.67 0.00 2.32
5613 8026 5.425630 GGACGGAGGAAGTACATTGTAATT 58.574 41.667 9.11 9.11 0.00 1.40
5614 8027 4.441079 CGGACGGAGGAAGTACATTGTAAT 60.441 45.833 0.00 0.00 0.00 1.89
5615 8028 3.119388 CGGACGGAGGAAGTACATTGTAA 60.119 47.826 0.00 0.00 0.00 2.41
5616 8029 2.424601 CGGACGGAGGAAGTACATTGTA 59.575 50.000 0.00 0.00 0.00 2.41
5617 8030 1.203994 CGGACGGAGGAAGTACATTGT 59.796 52.381 0.00 0.00 0.00 2.71
5618 8031 1.470979 CCGGACGGAGGAAGTACATTG 60.471 57.143 4.40 0.00 37.50 2.82
5619 8032 0.822164 CCGGACGGAGGAAGTACATT 59.178 55.000 4.40 0.00 37.50 2.71
5620 8033 0.033796 TCCGGACGGAGGAAGTACAT 60.034 55.000 9.76 0.00 39.76 2.29
5621 8034 1.379916 TCCGGACGGAGGAAGTACA 59.620 57.895 9.76 0.00 39.76 2.90
5622 8035 4.326255 TCCGGACGGAGGAAGTAC 57.674 61.111 9.76 0.00 39.76 2.73
5630 8043 2.040679 TCCACATATATCTCCGGACGGA 59.959 50.000 13.40 13.40 42.90 4.69
5631 8044 2.443416 TCCACATATATCTCCGGACGG 58.557 52.381 0.00 3.96 0.00 4.79
5633 8046 7.406031 TTCTTATCCACATATATCTCCGGAC 57.594 40.000 0.00 0.00 0.00 4.79
5634 8047 8.609617 ATTTCTTATCCACATATATCTCCGGA 57.390 34.615 2.93 2.93 0.00 5.14
5635 8048 9.973450 CTATTTCTTATCCACATATATCTCCGG 57.027 37.037 0.00 0.00 0.00 5.14
5645 8058 9.753674 TTCAAGGTTTCTATTTCTTATCCACAT 57.246 29.630 0.00 0.00 0.00 3.21
5646 8059 9.010029 GTTCAAGGTTTCTATTTCTTATCCACA 57.990 33.333 0.00 0.00 0.00 4.17
5647 8060 9.010029 TGTTCAAGGTTTCTATTTCTTATCCAC 57.990 33.333 0.00 0.00 0.00 4.02
5649 8062 9.010029 TGTGTTCAAGGTTTCTATTTCTTATCC 57.990 33.333 0.00 0.00 0.00 2.59
5651 8064 8.515414 GCTGTGTTCAAGGTTTCTATTTCTTAT 58.485 33.333 0.00 0.00 0.00 1.73
5652 8065 7.719633 AGCTGTGTTCAAGGTTTCTATTTCTTA 59.280 33.333 0.00 0.00 0.00 2.10
5655 8068 6.319141 AGCTGTGTTCAAGGTTTCTATTTC 57.681 37.500 0.00 0.00 0.00 2.17
5656 8069 6.321181 TGAAGCTGTGTTCAAGGTTTCTATTT 59.679 34.615 0.00 0.00 33.41 1.40
5657 8070 5.827797 TGAAGCTGTGTTCAAGGTTTCTATT 59.172 36.000 0.00 0.00 33.41 1.73
5658 8071 5.376625 TGAAGCTGTGTTCAAGGTTTCTAT 58.623 37.500 0.00 0.00 33.41 1.98
5659 8072 4.776349 TGAAGCTGTGTTCAAGGTTTCTA 58.224 39.130 0.00 0.00 33.41 2.10
5661 8074 4.574599 ATGAAGCTGTGTTCAAGGTTTC 57.425 40.909 0.00 0.00 39.84 2.78
5662 8075 6.655078 ATTATGAAGCTGTGTTCAAGGTTT 57.345 33.333 0.00 0.00 39.84 3.27
5663 8076 7.944729 ATATTATGAAGCTGTGTTCAAGGTT 57.055 32.000 0.00 0.00 39.84 3.50
5664 8077 9.277783 GATATATTATGAAGCTGTGTTCAAGGT 57.722 33.333 0.00 0.00 39.84 3.50
5665 8078 9.276590 TGATATATTATGAAGCTGTGTTCAAGG 57.723 33.333 0.00 0.00 39.84 3.61
5667 8080 9.612066 TGTGATATATTATGAAGCTGTGTTCAA 57.388 29.630 0.00 0.00 39.84 2.69
5669 8082 8.499162 GGTGTGATATATTATGAAGCTGTGTTC 58.501 37.037 0.00 0.00 0.00 3.18
5671 8084 7.508687 TGGTGTGATATATTATGAAGCTGTGT 58.491 34.615 0.00 0.00 0.00 3.72
5672 8085 7.658982 ACTGGTGTGATATATTATGAAGCTGTG 59.341 37.037 0.00 0.00 0.00 3.66
5673 8086 7.739825 ACTGGTGTGATATATTATGAAGCTGT 58.260 34.615 0.00 0.00 0.00 4.40
5703 8116 9.878737 GGCCTCCCTTGATTACTATACTATATA 57.121 37.037 0.00 0.00 0.00 0.86
5704 8117 8.579259 AGGCCTCCCTTGATTACTATACTATAT 58.421 37.037 0.00 0.00 38.74 0.86
5705 8118 7.951911 AGGCCTCCCTTGATTACTATACTATA 58.048 38.462 0.00 0.00 38.74 1.31
5706 8119 6.816960 AGGCCTCCCTTGATTACTATACTAT 58.183 40.000 0.00 0.00 38.74 2.12
5707 8120 6.046881 AGAGGCCTCCCTTGATTACTATACTA 59.953 42.308 29.54 0.00 43.12 1.82
5708 8121 5.088026 GAGGCCTCCCTTGATTACTATACT 58.912 45.833 23.19 0.00 43.12 2.12
5709 8122 5.046950 CAGAGGCCTCCCTTGATTACTATAC 60.047 48.000 29.54 0.00 43.12 1.47
5710 8123 5.087323 CAGAGGCCTCCCTTGATTACTATA 58.913 45.833 29.54 0.00 43.12 1.31
5711 8124 3.906846 CAGAGGCCTCCCTTGATTACTAT 59.093 47.826 29.54 2.46 43.12 2.12
5712 8125 3.309296 CAGAGGCCTCCCTTGATTACTA 58.691 50.000 29.54 0.00 43.12 1.82
5714 8127 1.141858 CCAGAGGCCTCCCTTGATTAC 59.858 57.143 29.54 0.17 43.12 1.89
5715 8128 1.511613 CCAGAGGCCTCCCTTGATTA 58.488 55.000 29.54 0.00 43.12 1.75
5716 8129 1.931007 GCCAGAGGCCTCCCTTGATT 61.931 60.000 29.54 5.79 44.06 2.57
5717 8130 2.381941 GCCAGAGGCCTCCCTTGAT 61.382 63.158 29.54 6.63 44.06 2.57
5718 8131 3.011517 GCCAGAGGCCTCCCTTGA 61.012 66.667 29.54 0.00 44.06 3.02
5728 8141 2.726821 TGATTTAAGCCTTGCCAGAGG 58.273 47.619 0.00 0.00 39.93 3.69
5729 8142 4.789012 TTTGATTTAAGCCTTGCCAGAG 57.211 40.909 0.00 0.00 0.00 3.35
5730 8143 4.588528 AGTTTTGATTTAAGCCTTGCCAGA 59.411 37.500 0.00 0.00 0.00 3.86
5731 8144 4.886579 AGTTTTGATTTAAGCCTTGCCAG 58.113 39.130 0.00 0.00 0.00 4.85
5733 8146 6.253512 CGATAAGTTTTGATTTAAGCCTTGCC 59.746 38.462 0.00 0.00 0.00 4.52
5734 8147 6.806739 ACGATAAGTTTTGATTTAAGCCTTGC 59.193 34.615 0.00 0.00 0.00 4.01
5735 8148 8.742554 AACGATAAGTTTTGATTTAAGCCTTG 57.257 30.769 0.00 0.00 40.88 3.61
5750 8163 5.727791 GCAGATGCGATTGAAACGATAAGTT 60.728 40.000 0.00 0.00 46.76 2.66
5751 8164 4.260375 GCAGATGCGATTGAAACGATAAGT 60.260 41.667 0.00 0.00 0.00 2.24
5752 8165 4.206843 GCAGATGCGATTGAAACGATAAG 58.793 43.478 0.00 0.00 0.00 1.73
5754 8167 2.543848 GGCAGATGCGATTGAAACGATA 59.456 45.455 0.00 0.00 43.26 2.92
5755 8168 1.331756 GGCAGATGCGATTGAAACGAT 59.668 47.619 0.00 0.00 43.26 3.73
5757 8170 0.248215 GGGCAGATGCGATTGAAACG 60.248 55.000 0.00 0.00 43.26 3.60
5758 8171 1.098050 AGGGCAGATGCGATTGAAAC 58.902 50.000 0.00 0.00 43.26 2.78
5761 8174 1.382522 GAAAGGGCAGATGCGATTGA 58.617 50.000 0.00 0.00 43.26 2.57
5762 8175 0.383231 GGAAAGGGCAGATGCGATTG 59.617 55.000 0.00 0.00 43.26 2.67
5763 8176 0.257039 AGGAAAGGGCAGATGCGATT 59.743 50.000 0.00 0.00 43.26 3.34
5764 8177 0.465097 CAGGAAAGGGCAGATGCGAT 60.465 55.000 0.00 0.00 43.26 4.58
5765 8178 1.078214 CAGGAAAGGGCAGATGCGA 60.078 57.895 0.00 0.00 43.26 5.10
5766 8179 2.117156 CCAGGAAAGGGCAGATGCG 61.117 63.158 0.00 0.00 43.26 4.73
5768 8181 0.750911 GCTCCAGGAAAGGGCAGATG 60.751 60.000 0.00 0.00 0.00 2.90
5769 8182 0.918310 AGCTCCAGGAAAGGGCAGAT 60.918 55.000 1.47 0.00 0.00 2.90
5770 8183 1.539869 AGCTCCAGGAAAGGGCAGA 60.540 57.895 1.47 0.00 0.00 4.26
5771 8184 1.077858 GAGCTCCAGGAAAGGGCAG 60.078 63.158 0.87 0.00 0.00 4.85
5773 8186 1.077858 CAGAGCTCCAGGAAAGGGC 60.078 63.158 10.93 0.00 0.00 5.19
5775 8188 4.494091 TTATTCAGAGCTCCAGGAAAGG 57.506 45.455 10.93 0.00 0.00 3.11
5776 8189 7.678837 AGATATTATTCAGAGCTCCAGGAAAG 58.321 38.462 10.93 0.00 0.00 2.62
5777 8190 7.256475 GGAGATATTATTCAGAGCTCCAGGAAA 60.256 40.741 10.93 0.21 40.05 3.13
5778 8191 6.212388 GGAGATATTATTCAGAGCTCCAGGAA 59.788 42.308 10.93 12.48 40.05 3.36
5779 8192 5.719085 GGAGATATTATTCAGAGCTCCAGGA 59.281 44.000 10.93 2.91 40.05 3.86
5780 8193 5.483231 TGGAGATATTATTCAGAGCTCCAGG 59.517 44.000 10.93 0.10 43.81 4.45
5781 8194 6.602410 TGGAGATATTATTCAGAGCTCCAG 57.398 41.667 10.93 3.46 43.81 3.86
5783 8196 5.187576 AGCTGGAGATATTATTCAGAGCTCC 59.812 44.000 10.93 0.00 40.56 4.70
5784 8197 6.284891 AGCTGGAGATATTATTCAGAGCTC 57.715 41.667 5.27 5.27 29.61 4.09
5785 8198 6.953520 AGTAGCTGGAGATATTATTCAGAGCT 59.046 38.462 0.00 0.00 35.82 4.09
5787 8200 7.035004 GCAGTAGCTGGAGATATTATTCAGAG 58.965 42.308 0.00 0.00 37.91 3.35
5788 8201 6.494835 TGCAGTAGCTGGAGATATTATTCAGA 59.505 38.462 0.00 0.00 42.74 3.27
5789 8202 6.695429 TGCAGTAGCTGGAGATATTATTCAG 58.305 40.000 0.00 0.00 42.74 3.02
5790 8203 6.670695 TGCAGTAGCTGGAGATATTATTCA 57.329 37.500 0.00 0.00 42.74 2.57
5791 8204 7.821359 TGAATGCAGTAGCTGGAGATATTATTC 59.179 37.037 0.00 0.00 42.74 1.75
5794 8207 6.670695 TGAATGCAGTAGCTGGAGATATTA 57.329 37.500 0.00 0.00 42.74 0.98
5795 8208 5.557576 TGAATGCAGTAGCTGGAGATATT 57.442 39.130 0.00 0.00 42.74 1.28
5797 8210 4.202295 CCTTGAATGCAGTAGCTGGAGATA 60.202 45.833 0.00 0.00 42.74 1.98
5799 8212 2.093288 CCTTGAATGCAGTAGCTGGAGA 60.093 50.000 0.00 0.00 42.74 3.71
5800 8213 2.286872 CCTTGAATGCAGTAGCTGGAG 58.713 52.381 0.00 0.00 42.74 3.86
5801 8214 1.065199 CCCTTGAATGCAGTAGCTGGA 60.065 52.381 0.00 0.00 42.74 3.86
5802 8215 1.386533 CCCTTGAATGCAGTAGCTGG 58.613 55.000 0.00 0.00 42.74 4.85
5803 8216 1.065199 TCCCCTTGAATGCAGTAGCTG 60.065 52.381 0.00 0.00 42.74 4.24
5804 8217 1.211457 CTCCCCTTGAATGCAGTAGCT 59.789 52.381 0.00 0.00 42.74 3.32
5806 8219 1.673168 GCTCCCCTTGAATGCAGTAG 58.327 55.000 0.00 0.00 0.00 2.57
5807 8220 0.255890 GGCTCCCCTTGAATGCAGTA 59.744 55.000 0.00 0.00 0.00 2.74
5808 8221 1.000396 GGCTCCCCTTGAATGCAGT 60.000 57.895 0.00 0.00 0.00 4.40
5809 8222 1.035932 CAGGCTCCCCTTGAATGCAG 61.036 60.000 0.00 0.00 40.33 4.41
5810 8223 1.000521 CAGGCTCCCCTTGAATGCA 60.001 57.895 0.00 0.00 40.33 3.96
5811 8224 1.034292 GTCAGGCTCCCCTTGAATGC 61.034 60.000 0.00 0.00 40.33 3.56
5812 8225 0.745845 CGTCAGGCTCCCCTTGAATG 60.746 60.000 0.00 0.00 40.33 2.67
5813 8226 1.604378 CGTCAGGCTCCCCTTGAAT 59.396 57.895 0.00 0.00 40.33 2.57
5814 8227 2.592993 CCGTCAGGCTCCCCTTGAA 61.593 63.158 0.00 0.00 40.33 2.69
5815 8228 3.003173 CCGTCAGGCTCCCCTTGA 61.003 66.667 0.00 0.00 40.33 3.02
5816 8229 4.101448 CCCGTCAGGCTCCCCTTG 62.101 72.222 0.00 0.00 40.33 3.61
5817 8230 4.332543 TCCCGTCAGGCTCCCCTT 62.333 66.667 0.00 0.00 40.33 3.95
5818 8231 4.787280 CTCCCGTCAGGCTCCCCT 62.787 72.222 0.00 0.00 44.25 4.79
5852 8492 1.304217 AGACGGAGGAGGCGAAAGA 60.304 57.895 0.00 0.00 0.00 2.52
5854 8494 2.348888 GGAGACGGAGGAGGCGAAA 61.349 63.158 0.00 0.00 0.00 3.46
5855 8495 2.754658 GGAGACGGAGGAGGCGAA 60.755 66.667 0.00 0.00 0.00 4.70
5856 8496 3.997400 CTGGAGACGGAGGAGGCGA 62.997 68.421 0.00 0.00 39.98 5.54
5932 8624 4.778415 CCCGACGCTCTCACCACG 62.778 72.222 0.00 0.00 0.00 4.94
5936 8628 4.838486 CTCGCCCGACGCTCTCAC 62.838 72.222 0.00 0.00 43.23 3.51
6072 8773 1.594833 CCATCGAAACTCCCGTGGA 59.405 57.895 0.00 0.00 33.34 4.02
6076 8784 2.189521 CCCCCATCGAAACTCCCG 59.810 66.667 0.00 0.00 0.00 5.14
6093 8801 2.391389 GCACTTGTAGGCGCCTGTC 61.391 63.158 38.98 28.86 0.00 3.51
6094 8802 2.358737 GCACTTGTAGGCGCCTGT 60.359 61.111 38.98 24.86 0.00 4.00
6197 8907 9.508642 GATATTTGTTGAATTTACCCCCAAAAA 57.491 29.630 0.00 0.00 0.00 1.94
6198 8908 8.660435 TGATATTTGTTGAATTTACCCCCAAAA 58.340 29.630 0.00 0.00 0.00 2.44
6199 8909 8.097662 GTGATATTTGTTGAATTTACCCCCAAA 58.902 33.333 0.00 0.00 0.00 3.28
6200 8910 7.577807 CGTGATATTTGTTGAATTTACCCCCAA 60.578 37.037 0.00 0.00 0.00 4.12
6201 8911 6.127591 CGTGATATTTGTTGAATTTACCCCCA 60.128 38.462 0.00 0.00 0.00 4.96
6202 8912 6.127563 ACGTGATATTTGTTGAATTTACCCCC 60.128 38.462 0.00 0.00 0.00 5.40
6203 8913 6.750039 CACGTGATATTTGTTGAATTTACCCC 59.250 38.462 10.90 0.00 0.00 4.95
6204 8914 7.309920 ACACGTGATATTTGTTGAATTTACCC 58.690 34.615 25.01 0.00 0.00 3.69
6205 8915 8.736751 AACACGTGATATTTGTTGAATTTACC 57.263 30.769 25.01 0.00 32.21 2.85
6207 8917 9.952188 TGAAACACGTGATATTTGTTGAATTTA 57.048 25.926 25.01 0.00 33.73 1.40
6208 8918 8.864069 TGAAACACGTGATATTTGTTGAATTT 57.136 26.923 25.01 7.11 33.73 1.82
6209 8919 8.864069 TTGAAACACGTGATATTTGTTGAATT 57.136 26.923 25.01 0.00 33.73 2.17
6210 8920 8.864069 TTTGAAACACGTGATATTTGTTGAAT 57.136 26.923 25.01 0.00 33.73 2.57
6211 8921 8.689251 TTTTGAAACACGTGATATTTGTTGAA 57.311 26.923 25.01 2.23 33.73 2.69
6212 8922 7.971168 ACTTTTGAAACACGTGATATTTGTTGA 59.029 29.630 25.01 0.00 33.73 3.18
6213 8923 8.114359 ACTTTTGAAACACGTGATATTTGTTG 57.886 30.769 25.01 7.55 33.73 3.33
6214 8924 9.445786 CTACTTTTGAAACACGTGATATTTGTT 57.554 29.630 25.01 0.19 34.92 2.83
6215 8925 8.832521 TCTACTTTTGAAACACGTGATATTTGT 58.167 29.630 25.01 12.70 0.00 2.83
6216 8926 9.658475 TTCTACTTTTGAAACACGTGATATTTG 57.342 29.630 25.01 7.51 0.00 2.32
6218 8928 9.825972 CATTCTACTTTTGAAACACGTGATATT 57.174 29.630 25.01 13.84 0.00 1.28
6219 8929 8.999431 ACATTCTACTTTTGAAACACGTGATAT 58.001 29.630 25.01 7.42 0.00 1.63
6220 8930 8.373048 ACATTCTACTTTTGAAACACGTGATA 57.627 30.769 25.01 1.94 0.00 2.15
6221 8931 7.259290 ACATTCTACTTTTGAAACACGTGAT 57.741 32.000 25.01 7.78 0.00 3.06
6222 8932 6.238266 GGACATTCTACTTTTGAAACACGTGA 60.238 38.462 25.01 0.00 0.00 4.35
6223 8933 5.907391 GGACATTCTACTTTTGAAACACGTG 59.093 40.000 15.48 15.48 0.00 4.49
6224 8934 5.587043 TGGACATTCTACTTTTGAAACACGT 59.413 36.000 0.00 0.00 0.00 4.49
6225 8935 6.055231 TGGACATTCTACTTTTGAAACACG 57.945 37.500 0.00 0.00 0.00 4.49
6226 8936 7.379529 CACATGGACATTCTACTTTTGAAACAC 59.620 37.037 0.00 0.00 0.00 3.32
6227 8937 7.068103 ACACATGGACATTCTACTTTTGAAACA 59.932 33.333 0.00 0.00 0.00 2.83
6228 8938 7.425606 ACACATGGACATTCTACTTTTGAAAC 58.574 34.615 0.00 0.00 0.00 2.78
6229 8939 7.581213 ACACATGGACATTCTACTTTTGAAA 57.419 32.000 0.00 0.00 0.00 2.69
6230 8940 7.581213 AACACATGGACATTCTACTTTTGAA 57.419 32.000 0.00 0.00 0.00 2.69
6231 8941 7.284261 TGAAACACATGGACATTCTACTTTTGA 59.716 33.333 0.00 0.00 0.00 2.69
6232 8942 7.424803 TGAAACACATGGACATTCTACTTTTG 58.575 34.615 0.00 0.00 0.00 2.44
6233 8943 7.581213 TGAAACACATGGACATTCTACTTTT 57.419 32.000 0.00 0.00 0.00 2.27
6234 8944 7.581213 TTGAAACACATGGACATTCTACTTT 57.419 32.000 0.00 0.00 0.00 2.66
6235 8945 7.581213 TTTGAAACACATGGACATTCTACTT 57.419 32.000 0.00 0.00 0.00 2.24
6236 8946 7.255590 CCTTTTGAAACACATGGACATTCTACT 60.256 37.037 0.00 0.00 0.00 2.57
6237 8947 6.863126 CCTTTTGAAACACATGGACATTCTAC 59.137 38.462 0.00 0.00 0.00 2.59
6238 8948 6.549364 ACCTTTTGAAACACATGGACATTCTA 59.451 34.615 0.00 0.00 0.00 2.10
6239 8949 5.363580 ACCTTTTGAAACACATGGACATTCT 59.636 36.000 0.00 0.00 0.00 2.40
6240 8950 5.600696 ACCTTTTGAAACACATGGACATTC 58.399 37.500 0.00 0.00 0.00 2.67
6241 8951 5.612725 ACCTTTTGAAACACATGGACATT 57.387 34.783 0.00 0.00 0.00 2.71
6242 8952 6.916360 ATACCTTTTGAAACACATGGACAT 57.084 33.333 0.00 0.00 0.00 3.06
6243 8953 6.322456 TGAATACCTTTTGAAACACATGGACA 59.678 34.615 0.00 0.00 0.00 4.02
6244 8954 6.744112 TGAATACCTTTTGAAACACATGGAC 58.256 36.000 0.00 0.00 0.00 4.02
6245 8955 6.968263 TGAATACCTTTTGAAACACATGGA 57.032 33.333 0.00 0.00 0.00 3.41
6246 8956 7.377398 TCATGAATACCTTTTGAAACACATGG 58.623 34.615 0.00 0.00 34.29 3.66
6247 8957 8.815141 TTCATGAATACCTTTTGAAACACATG 57.185 30.769 3.38 0.00 34.64 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.